BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11035
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|B Chain B, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|C Chain C, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|D Chain D, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
Length = 381
Score = 65.5 bits (158), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
AR VM L H VETPVFMPVGT ++K + P+ LE +IIL NT+HL LKP
Sbjct: 24 ARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKP 77
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In
Complex With Queuine
Length = 385
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Queuine
Length = 385
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q
Mutant
Length = 388
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 27 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 80
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 27 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 80
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Preq1
pdb|4H6E|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
Apo Structure
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure
pdb|3BLD|A Chain A, Trna Guanine Transglycosylase V233g Mutant Preq1 Complex
Structure
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f,
C158v, A232s, V233g- Apo-Structure
pdb|3BLL|A Chain A, Tgt Mutant In Complex With Boc-Preq1
pdb|3BLO|A Chain A, Tgt Mutant In Complex With Queuine
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex
With 7-Deaza-7- Aminomethyl-Guanine
Length = 385
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex
With Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo
Structure, Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In
Complex With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,
7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex
With Preq1
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 24 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 77
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized
At Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+K + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRP 78
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 21 ARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74
ART + + + TP FMPVGT T+ + P+ + IILGNTYHL L+P
Sbjct: 25 ARTGTIEMKRGVIRTPAFMPVGTAATVMALKPETVRATGADIILGNTYHLMLRP 78
>pdb|3MMS|A Chain A, Crystal Structure Of Streptococcus Pneumoniae MtaSAH
NUCLEO Complex With 8-Aminoadenine
Length = 230
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 51 LPQQLETLDCQIILGNTYHLG 71
L Q L+ Q++LGNTYH G
Sbjct: 16 LVQHLDNAQEQVVLGNTYHTG 36
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1J2B|A Chain A, Crystal Structure Of Archaeosine Trna-guanine
Transglycosylase Complexed With Lambda-form Trna(val)
pdb|1J2B|B Chain B, Crystal Structure Of Archaeosine Trna-guanine
Transglycosylase Complexed With Lambda-form Trna(val)
Length = 582
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 1 MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
MS + L+F++ A R + + +ETP MPV + + P++LE +
Sbjct: 1 MSRGDKMLKFEIKAR--DGAGRIGKLEVNGKKIETPAIMPVVNPKQMV-VEPKELEKMGF 57
Query: 61 QIILGNTY 68
+II+ N+Y
Sbjct: 58 EIIITNSY 65
>pdb|1ZOS|A Chain A, Structure Of
5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|B Chain B, Structure Of
5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|C Chain C, Structure Of
5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|D Chain D, Structure Of
5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|E Chain E, Structure Of
5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|F Chain F, Structure Of
5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
Length = 230
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 51 LPQQLETLDCQIILGNTYHLG 71
L Q L+ Q++LGNTYH G
Sbjct: 16 LVQHLDNTQEQVVLGNTYHTG 36
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex
Length = 1140
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 33 VETPVFMPVGTKGTIKGILP 52
V T +PVGTKGT+ GI P
Sbjct: 1068 VRTIYMVPVGTKGTVIGIHP 1087
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 12 VLAECPV-SNARTSVMTLPHHDVETPVFM--PVG------------TKGTIKGILPQQLE 56
V A+ PV S+ R ++ P DV T F P G T+G I+ +LPQ
Sbjct: 89 VSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGMIRELLPQGAV 148
Query: 57 TLDCQIILGN 66
T D + IL N
Sbjct: 149 TPDLRAILTN 158
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 12 VLAECPV-SNARTSVMTLPHHDVETPVFM--PVG------------TKGTIKGILPQQLE 56
V A+ PV S+ R ++ P DV T F P G T+G I+ +LPQ
Sbjct: 93 VSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRGMIRELLPQGAV 152
Query: 57 TLDCQIILGN 66
T D + IL N
Sbjct: 153 TPDLRAILTN 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,221,438
Number of Sequences: 62578
Number of extensions: 72498
Number of successful extensions: 147
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 29
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)