Query psy11035
Match_columns 77
No_of_seqs 148 out of 1052
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 16:27:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0343 Tgt Queuine/archaeosin 100.0 5.9E-30 1.3E-34 196.6 5.2 66 10-77 1-66 (372)
2 KOG3908|consensus 100.0 1.6E-29 3.4E-34 192.3 3.4 77 1-77 1-77 (396)
3 PRK01008 queuine tRNA-ribosylt 99.9 1E-28 2.2E-33 189.4 4.1 67 7-77 2-68 (372)
4 PRK00112 tgt queuine tRNA-ribo 99.9 9.9E-28 2.2E-32 182.7 5.3 69 7-77 2-70 (366)
5 TIGR00449 tgt_general tRNA-gua 99.9 9.5E-28 2.1E-32 182.9 5.0 66 10-77 1-66 (367)
6 TIGR00430 Q_tRNA_tgt tRNA-guan 99.9 1.1E-27 2.5E-32 182.6 4.6 66 10-77 1-66 (368)
7 PRK13534 7-cyano-7-deazaguanin 99.9 3.4E-27 7.3E-32 190.2 5.5 65 9-76 1-65 (639)
8 PRK13533 7-cyano-7-deazaguanin 99.9 3.5E-26 7.6E-31 179.9 5.4 64 7-73 2-65 (487)
9 KOG3909|consensus 85.7 1.5 3.2E-05 35.0 4.3 48 8-57 1-50 (414)
10 PF10504 DUF2452: Protein of u 84.9 0.38 8.3E-06 34.0 0.7 18 58-75 86-103 (159)
11 cd06564 GH20_DspB_LnbB-like Gl 75.3 2.5 5.4E-05 31.6 2.3 27 50-76 226-252 (326)
12 KOG1579|consensus 66.9 3.6 7.8E-05 31.9 1.6 16 56-71 63-78 (317)
13 PF02574 S-methyl_trans: Homoc 63.1 3.3 7.1E-05 30.4 0.7 15 57-71 52-66 (305)
14 PRK09485 mmuM homocysteine met 58.8 6.2 0.00014 29.4 1.6 23 47-70 48-70 (304)
15 PRK07534 methionine synthase I 56.6 5.2 0.00011 30.6 0.8 14 56-69 55-68 (336)
16 TIGR03572 WbuZ glycosyl amidat 52.9 12 0.00025 26.3 2.1 31 38-70 197-232 (232)
17 cd00636 TroA-like Helical back 51.2 18 0.0004 21.6 2.6 26 45-70 47-72 (148)
18 cd06563 GH20_chitobiase-like T 48.5 15 0.00033 27.8 2.3 24 52-75 247-270 (357)
19 smart00839 ELFV_dehydrog Gluta 46.5 26 0.00056 22.2 2.8 27 36-65 4-30 (102)
20 PLN02489 homocysteine S-methyl 46.0 13 0.00027 28.4 1.5 15 56-70 65-79 (335)
21 PF10933 DUF2827: Protein of u 45.1 13 0.00029 29.3 1.5 52 18-74 187-238 (364)
22 TIGR00532 HMG_CoA_R_NAD hydrox 42.5 16 0.00034 29.0 1.6 30 30-61 323-355 (393)
23 TIGR03562 osmo_induc_OsmC pero 41.3 38 0.00083 22.5 3.1 47 10-57 1-49 (135)
24 COG0646 MetH Methionine syntha 39.6 15 0.00033 28.5 1.1 12 57-68 64-75 (311)
25 COG1794 RacX Aspartate racemas 39.4 16 0.00034 27.3 1.0 53 20-72 27-90 (230)
26 cd06569 GH20_Sm-chitobiase-lik 39.2 21 0.00046 28.3 1.8 21 53-73 297-317 (445)
27 TIGR03772 anch_rpt_subst ancho 39.1 23 0.0005 28.6 2.0 39 32-70 20-59 (479)
28 KOG2250|consensus 38.4 29 0.00062 28.7 2.5 33 32-64 331-363 (514)
29 PLN02629 powdery mildew resist 35.6 23 0.0005 28.0 1.5 18 58-75 204-221 (387)
30 PRK08645 bifunctional homocyst 33.3 25 0.00054 28.8 1.4 14 57-70 54-67 (612)
31 COG1171 IlvA Threonine dehydra 31.7 27 0.00059 27.3 1.3 32 33-68 98-129 (347)
32 PTZ00079 NADP-specific glutama 30.9 35 0.00075 27.6 1.8 31 34-64 320-350 (454)
33 cd06562 GH20_HexA_HexB-like Be 30.7 40 0.00086 25.6 2.1 25 51-75 233-257 (348)
34 cd06568 GH20_SpHex_like A subg 30.0 45 0.00097 25.2 2.2 24 52-75 220-243 (329)
35 PRK07475 hypothetical protein; 29.4 24 0.00051 25.5 0.6 17 56-72 75-93 (245)
36 PF09652 Cas_VVA1548: Putative 28.8 39 0.00086 21.9 1.5 16 48-63 71-86 (93)
37 PRK11320 prpB 2-methylisocitra 28.7 76 0.0016 24.0 3.2 35 33-67 201-236 (292)
38 PF10927 DUF2738: Protein of u 28.2 93 0.002 23.3 3.6 40 6-45 6-51 (244)
39 PF14250 AbrB-like: AbrB-like 27.8 32 0.00068 21.4 0.9 18 60-77 39-58 (71)
40 TIGR02620 cas_VVA1548 putative 27.4 42 0.00091 21.8 1.5 16 48-63 71-86 (93)
41 PRK10200 putative racemase; Pr 26.1 37 0.00079 24.3 1.1 20 53-72 69-90 (230)
42 PHA02127 hypothetical protein 25.6 38 0.00083 19.9 0.9 26 36-66 31-56 (57)
43 cd02742 GH20_hexosaminidase Be 25.4 52 0.0011 24.3 1.8 21 52-72 220-240 (303)
44 PF06206 CpeT: CpeT/CpcT famil 24.1 65 0.0014 22.4 2.0 55 21-75 59-127 (179)
45 PF02772 S-AdoMet_synt_M: S-ad 23.6 27 0.00058 23.4 0.0 12 32-43 16-27 (120)
46 PRK13772 formimidoylglutamase; 23.5 39 0.00084 25.3 0.9 25 33-58 249-274 (314)
47 cd01149 HutB Hemin binding pro 22.8 75 0.0016 21.7 2.1 24 45-68 44-67 (235)
48 TIGR02317 prpB methylisocitrat 22.2 1.2E+02 0.0025 22.9 3.2 32 33-64 196-227 (285)
49 TIGR00734 hisAF_rel hisA/hisF 21.7 50 0.0011 23.5 1.1 34 37-70 183-218 (221)
50 KOG1816|consensus 21.6 33 0.00071 26.7 0.1 51 5-55 56-127 (308)
51 TIGR02319 CPEP_Pphonmut carbox 21.6 1.2E+02 0.0026 23.0 3.2 32 33-64 200-231 (294)
52 COG0803 LraI ABC-type metal io 21.1 82 0.0018 23.3 2.2 34 37-70 58-92 (303)
53 TIGR01698 PUNP purine nucleoti 20.5 1.1E+02 0.0024 22.4 2.7 30 37-67 54-91 (237)
54 PRK09490 metH B12-dependent me 20.5 39 0.00085 30.5 0.4 14 56-69 75-88 (1229)
55 PRK13776 formimidoylglutamase; 20.1 50 0.0011 24.8 0.9 25 33-58 250-275 (318)
56 cd00377 ICL_PEPM Members of th 20.0 1.4E+02 0.0031 21.5 3.2 32 33-66 195-227 (243)
57 KOG1250|consensus 20.0 65 0.0014 26.3 1.5 29 33-65 138-166 (457)
No 1
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.9e-30 Score=196.55 Aligned_cols=66 Identities=52% Similarity=0.842 Sum_probs=62.8
Q ss_pred EEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 10 F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
|+++++|. +||+|+|+|+||+||||+||||||+|+||++++++|+++|+||||+||||||+|||.+
T Consensus 1 f~~~~~d~--~aR~G~l~t~hg~ieTP~FmPVgt~~~vk~~~~~~l~~~ga~iil~NtYhl~lrpg~e 66 (372)
T COG0343 1 FEILAKDG--GARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLYLRPGLE 66 (372)
T ss_pred CeeeccCC--CeeeEEEEcCCCcccCCceeecccccccccCCHHHHHhcCCCEEeeceeeeeeCCchh
Confidence 67777775 9999999999999999999999999999999999999999999999999999999974
No 2
>KOG3908|consensus
Probab=99.95 E-value=1.6e-29 Score=192.29 Aligned_cols=77 Identities=58% Similarity=1.106 Sum_probs=73.2
Q ss_pred CCCCCCceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 1 MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 1 ~~~~~~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
|..+.+++.|++.++|+.++||+|.|++||+.||||+||||||||++||+.||||.++||+|+|+|||||.+|||.|
T Consensus 1 ~~s~~~~~~~kvvarcs~t~AR~g~l~Lph~~vetPVFMPVGTqgtmKGI~peqL~~l~Cri~L~NTYHLGlrPG~E 77 (396)
T KOG3908|consen 1 MASSFPPLDFKVVARCSTTRARVGTLELPHSSVETPVFMPVGTQGTMKGIVPEQLDELGCRILLGNTYHLGLRPGHE 77 (396)
T ss_pred CCCccCchhhhhhhhhcccccceeeeecCCcccccceeeecccccccccccHHHHHhcCCEEEeccceecccCCcHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999965
No 3
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=99.95 E-value=1e-28 Score=189.38 Aligned_cols=67 Identities=34% Similarity=0.642 Sum_probs=63.4
Q ss_pred ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
.|.|+|.++|..++||+|+|+|+||+|+||+||||||+|+||++ |+++|+|+||+||||||+|||.+
T Consensus 2 ~~~F~i~~~~~~~~aR~G~l~t~hG~i~TP~fmPVgt~~~vk~l----l~~~g~~iil~NtyhL~lrpg~~ 68 (372)
T PRK01008 2 ALKFELLHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFCNTYHLLVHPGTE 68 (372)
T ss_pred ceEEEEEeccCCCccceeEEEeCCcceeCCceeecccHHHHHHH----HHHcCCCEEEechhhhhhCCCHH
Confidence 47899999877789999999999999999999999999999999 89999999999999999999964
No 4
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=99.94 E-value=9.9e-28 Score=182.73 Aligned_cols=69 Identities=49% Similarity=0.793 Sum_probs=66.0
Q ss_pred ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
.|.|+|.++|. .||+|+|+|+||.|+||+||||+|+|+||+|++++|+++|+|+||+||||||+|||++
T Consensus 2 ~~~F~i~~~~~--~aR~G~l~t~hg~i~TP~fmpv~t~g~v~~lt~~~l~~~g~~~il~ntyhl~l~pg~~ 70 (366)
T PRK00112 2 MMKFELIKTDG--RARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYHLWLRPGLE 70 (366)
T ss_pred CcEEEEEeccC--CcceeEEEcCCcceeCCceeeccCCCcCCcCCHHHHHHcCCCeEeccHHHHhhCCcHH
Confidence 57899999984 7999999999999999999999999999999999999999999999999999999964
No 5
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=99.94 E-value=9.5e-28 Score=182.87 Aligned_cols=66 Identities=52% Similarity=0.833 Sum_probs=63.4
Q ss_pred EEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 10 F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
|+|.++|. .||+|+|+|+||.|+||+||||||+|+||+|++++|+++|+|+||+||||||+|||.+
T Consensus 1 F~i~~~~~--~aR~G~l~t~hg~i~TP~fmpv~t~g~vk~l~~~~l~~~g~~~il~Ntyhl~l~pg~~ 66 (367)
T TIGR00449 1 FEIKKTDG--HARVGRLKTPHGSVETPVFMPVGTLGTVKGLTPEELKKTGAQIILANTYHLYLRPGQK 66 (367)
T ss_pred CEEEeccC--CcceeEEEcCCceeeCCceEeeccCCcCCcCCHHHHHHcCCCEEecchhhhhcCCcHH
Confidence 89999885 7999999999999999999999999999999999999999999999999999999963
No 6
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=99.94 E-value=1.1e-27 Score=182.65 Aligned_cols=66 Identities=52% Similarity=0.847 Sum_probs=63.4
Q ss_pred EEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 10 FKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 10 F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
|+|.++|. .||+|+|+|+||.|+||+||||||+|+||+|++++|+++|+|+||+|||||++|||.+
T Consensus 1 f~i~~~~~--~aR~G~l~t~hg~i~TP~fmpv~t~g~vk~lt~~~l~~~g~~~il~Ntyhl~~rpg~~ 66 (368)
T TIGR00430 1 FELQKTDK--HARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELEATGAEIILANTYHLWLRPGQK 66 (368)
T ss_pred CEEEeccC--CcceeEEEcCCceeeCCceEecccccccCccCHHHHHHcCCCeEeccHHHHhhCCcHH
Confidence 78999886 6999999999999999999999999999999999999999999999999999999964
No 7
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=99.94 E-value=3.4e-27 Score=190.21 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=62.7
Q ss_pred eEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCC
Q psy11035 9 QFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVE 76 (77)
Q Consensus 9 ~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~ 76 (77)
.|||.++|. +||+|+|+|+||+|+||+||||| +++||+|+++||+++|+|+||+||||||+|||.
T Consensus 1 ~Fei~~~d~--~aR~G~l~t~hg~i~TP~fmPV~-~~~vk~~~~~~l~~~g~~~il~NtYhl~~~pg~ 65 (639)
T PRK13534 1 MFEIKARDA--LGRIGKLKTNGKKIETPTIMPVI-NPKKQTVDPDEIKKLGFDIVITNSYIIYKTPEL 65 (639)
T ss_pred CeEEEeccC--CcceEEEEcCCeeeeCCceeecc-cchhcccCHHHHHHhCCCEEEehhhhhhhCCch
Confidence 499999985 89999999999999999999999 999999999999999999999999999999985
No 8
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=99.92 E-value=3.5e-26 Score=179.94 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=61.3
Q ss_pred ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEecccccccc
Q psy11035 7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLK 73 (77)
Q Consensus 7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~r 73 (77)
.+.|||.++|. +||+|+|+|+||+|+||+||||| +++||++++++|+++|+|+||+||||||+|
T Consensus 2 ~~~Fei~~~d~--~aR~G~l~t~hg~ieTP~fmPV~-~~~~k~l~~~~l~~~g~~~il~NtYhl~~r 65 (487)
T PRK13533 2 MMVFEIRDKDL--AGRIGKLKTPHGVVETPALFPVI-NPNKQEISPDELKEFGAEILITNSYIIYRS 65 (487)
T ss_pred CceEEEeeccC--CcceeEEEcCCceeeCCceeecc-cchhcccCHHHHHHhCCCEEEeeHHHHHhh
Confidence 46799999985 89999999999999999999999 899999999999999999999999999998
No 9
>KOG3909|consensus
Probab=85.68 E-value=1.5 Score=34.98 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=40.4
Q ss_pred eeEEEEeecCCCCeeEEEEEcCCe--eecCCeeeeecccCcccccChHHHhc
Q psy11035 8 LQFKVLAECPVSNARTSVMTLPHH--DVETPVFMPVGTKGTIKGILPQQLET 57 (77)
Q Consensus 8 ~~F~i~~~~~~~~aR~G~l~t~hG--~ieTP~FmPVgT~g~vK~lt~~~l~~ 57 (77)
|+|.|...-. .+|.|.|....| +..||.|+---..|++--||++-+++
T Consensus 1 mkfsies~~n--ggRLgki~~~sg~~~~ktP~fllytk~GsiPhLT~dv~en 50 (414)
T KOG3909|consen 1 MKFSIESSPN--GGRLGKITVGSGNKVLKTPCFLLYTKRGSIPHLTPDVVEN 50 (414)
T ss_pred CceeeeeccC--CceeeeeeeccCCeeecCcceEeeccCCCCCcCCHHHHhh
Confidence 5688877653 799999997555 78999998888899999999998887
No 10
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=84.94 E-value=0.38 Score=33.97 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.7
Q ss_pred cCCcEEEeccccccccCC
Q psy11035 58 LDCQIILGNTYHLGLKPV 75 (77)
Q Consensus 58 ~g~~iiL~NtYHL~~rPG 75 (77)
.+++=|.+++||||.|+.
T Consensus 86 cnF~pipG~iYhLY~r~~ 103 (159)
T PF10504_consen 86 CNFEPIPGQIYHLYRREN 103 (159)
T ss_pred cCceecCCCEEEEEECCC
Confidence 577789999999999985
No 11
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.27 E-value=2.5 Score=31.59 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=23.2
Q ss_pred cChHHHhccCCcEEEeccccccccCCC
Q psy11035 50 ILPQQLETLDCQIILGNTYHLGLKPVE 76 (77)
Q Consensus 50 lt~~~l~~~g~~iiL~NtYHL~~rPG~ 76 (77)
-++.++.+.|.++|++|.+++|+.|+.
T Consensus 226 ~~~~~~~~~G~~vI~s~~~~~Y~~~~~ 252 (326)
T cd06564 226 ADPKELLNKGYKIINTNDGYLYIVPGA 252 (326)
T ss_pred cCHHHHHHCCCcEEEeCCCcEEEeCCC
Confidence 456778889999999999999998764
No 12
>KOG1579|consensus
Probab=66.94 E-value=3.6 Score=31.94 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=13.7
Q ss_pred hccCCcEEEecccccc
Q psy11035 56 ETLDCQIILGNTYHLG 71 (77)
Q Consensus 56 ~~~g~~iiL~NtYHL~ 71 (77)
-+.||+||.+|||+.-
T Consensus 63 L~aGadIi~T~Tyqas 78 (317)
T KOG1579|consen 63 LRAGADIISTNTYQAS 78 (317)
T ss_pred HHccCcEEEEeeeeec
Confidence 4579999999999974
No 13
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=63.09 E-value=3.3 Score=30.44 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=10.4
Q ss_pred ccCCcEEEecccccc
Q psy11035 57 TLDCQIILGNTYHLG 71 (77)
Q Consensus 57 ~~g~~iiL~NtYHL~ 71 (77)
+.|++||.+|||...
T Consensus 52 ~AGAdiI~TnTy~a~ 66 (305)
T PF02574_consen 52 EAGADIITTNTYQAS 66 (305)
T ss_dssp HHT-SEEEEC-TT-S
T ss_pred HCCCCeEEecCCcCc
Confidence 479999999999764
No 14
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=58.76 E-value=6.2 Score=29.37 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=15.8
Q ss_pred ccccChHHHhccCCcEEEeccccc
Q psy11035 47 IKGILPQQLETLDCQIILGNTYHL 70 (77)
Q Consensus 47 vK~lt~~~l~~~g~~iiL~NtYHL 70 (77)
|+.+-.+-+ +.|++||.+|||-.
T Consensus 48 V~~vH~~yl-~AGadiI~TnTy~a 70 (304)
T PRK09485 48 IYQVHLDYF-RAGADCAITASYQA 70 (304)
T ss_pred HHHHHHHHH-HhCCCEEEeecccc
Confidence 355533333 57999999999954
No 15
>PRK07534 methionine synthase I; Validated
Probab=56.59 E-value=5.2 Score=30.56 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.0
Q ss_pred hccCCcEEEecccc
Q psy11035 56 ETLDCQIILGNTYH 69 (77)
Q Consensus 56 ~~~g~~iiL~NtYH 69 (77)
-+.|+++|++|||-
T Consensus 55 l~AGAdiI~TnTy~ 68 (336)
T PRK07534 55 VDAGSDIILTNSFG 68 (336)
T ss_pred HHhcCCEEEecCcc
Confidence 35799999999994
No 16
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=52.93 E-value=12 Score=26.27 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.5
Q ss_pred eeeecccCcccccChHH----HhccCCc-EEEeccccc
Q psy11035 38 FMPVGTKGTIKGILPQQ----LETLDCQ-IILGNTYHL 70 (77)
Q Consensus 38 FmPVgT~g~vK~lt~~~----l~~~g~~-iiL~NtYHL 70 (77)
.+||...|-++ ++++ +++.|++ ++++.++|+
T Consensus 197 ~ipvia~GGi~--s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 197 SIPVIALGGAG--SLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred CCCEEEECCCC--CHHHHHHHHHHcCCCEEEEehhhhC
Confidence 47888888887 3455 6678998 667888885
No 17
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=51.23 E-value=18 Score=21.57 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.2
Q ss_pred CcccccChHHHhccCCcEEEeccccc
Q psy11035 45 GTIKGILPQQLETLDCQIILGNTYHL 70 (77)
Q Consensus 45 g~vK~lt~~~l~~~g~~iiL~NtYHL 70 (77)
+....+++|+|.+++.++|+.+.+..
T Consensus 47 ~~~~~~~~E~l~~l~pDlvi~~~~~~ 72 (148)
T cd00636 47 GHGYEPNLEKIAALKPDLIIANGSGL 72 (148)
T ss_pred CCCCCCCHHHHhccCCCEEEEecccc
Confidence 55568999999999999999988754
No 18
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.54 E-value=15 Score=27.79 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.8
Q ss_pred hHHHhccCCcEEEeccccccccCC
Q psy11035 52 PQQLETLDCQIILGNTYHLGLKPV 75 (77)
Q Consensus 52 ~~~l~~~g~~iiL~NtYHL~~rPG 75 (77)
..++.+.|.++|++|..|+|+-.+
T Consensus 247 ~~~~~~~G~~vI~s~~~~~Yld~~ 270 (357)
T cd06563 247 GIKAAKQGYDVIMSPGQYLYLDYA 270 (357)
T ss_pred HHHHHHCCCCEEEeCCCceEEecC
Confidence 456789999999999999999765
No 19
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=46.50 E-value=26 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=21.3
Q ss_pred CeeeeecccCcccccChHHHhccCCcEEEe
Q psy11035 36 PVFMPVGTKGTIKGILPQQLETLDCQIILG 65 (77)
Q Consensus 36 P~FmPVgT~g~vK~lt~~~l~~~g~~iiL~ 65 (77)
-+|+|.+..+ .++.+...+++|++|..
T Consensus 4 DI~~PcA~~~---~I~~~~a~~l~a~~V~e 30 (102)
T smart00839 4 DIFIPCALQN---VINEANANRLGAKIIAE 30 (102)
T ss_pred CEEEeCCCcC---cCCHHHHHHcCCeEEEe
Confidence 3799998655 46778888899999983
No 20
>PLN02489 homocysteine S-methyltransferase
Probab=45.97 E-value=13 Score=28.36 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=12.6
Q ss_pred hccCCcEEEeccccc
Q psy11035 56 ETLDCQIILGNTYHL 70 (77)
Q Consensus 56 ~~~g~~iiL~NtYHL 70 (77)
-+.|+++|.+|||-.
T Consensus 65 l~AGAdvI~TnTy~a 79 (335)
T PLN02489 65 LEAGADIIITASYQA 79 (335)
T ss_pred HHhCCCEEEeccccc
Confidence 357999999999964
No 21
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=45.10 E-value=13 Score=29.32 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccC
Q psy11035 18 VSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKP 74 (77)
Q Consensus 18 ~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rP 74 (77)
.+..|+++++-+...|.| +|+|.---...=--.|+-+ ..+-++|||||.-.|
T Consensus 187 ~~~~RvavfEPNi~vvK~-~~~PmLi~E~aYR~~P~~v----~~~~V~Nt~~~ke~~ 238 (364)
T PF10933_consen 187 RPGKRVAVFEPNISVVKT-CFIPMLICEEAYRADPDAV----EHVYVTNTYHLKEHP 238 (364)
T ss_pred CCCceEEEecCCceEEee-cCccHHHHHHHHHhChhhc----ceEEEecchhhhcCH
Confidence 457999999999999999 7888651111111223333 247889999995444
No 22
>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative. Most known examples of hydroxymethylglutaryl-CoA reductase are NADP-dependent (EC 1.1.1.34) from eukaryotes and archaea, involved in the biosynthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA. This model, in contrast, is built from the two examples in completed genomes of sequences closely related to the degradative, NAD-dependent hydroxymethylglutaryl-CoA reductase of Pseudomonas mevalonii, a bacterium that can use mevalonate as its sole carbon source.
Probab=42.45 E-value=16 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred CeeecCCeeeeecccCcccccChHH---HhccCCc
Q psy11035 30 HHDVETPVFMPVGTKGTIKGILPQQ---LETLDCQ 61 (77)
Q Consensus 30 hG~ieTP~FmPVgT~g~vK~lt~~~---l~~~g~~ 61 (77)
+|.|+-| |||||.|--..+.|.. |+=+|++
T Consensus 323 ~gsitlP--L~VGtVGGgt~l~p~~~~~l~iLg~~ 355 (393)
T TIGR00532 323 VGEIEIP--LAVGTIGGAIKFNEAAIISFKILGVN 355 (393)
T ss_pred EEEEEEc--ceEEEecCccccCHHHHHHHHHhCCC
Confidence 3789999 9999999777776655 5556654
No 23
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=41.28 E-value=38 Score=22.48 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=31.8
Q ss_pred EEEEeecCCC-CeeEEEEEcCCeee-cCCeeeeecccCcccccChHHHhc
Q psy11035 10 FKVLAECPVS-NARTSVMTLPHHDV-ETPVFMPVGTKGTIKGILPQQLET 57 (77)
Q Consensus 10 F~i~~~~~~~-~aR~G~l~t~hG~i-eTP~FmPVgT~g~vK~lt~~~l~~ 57 (77)
|++.+.-..+ +.-.|..++++|.+ +++.=+|-.-.+. .|..|+||--
T Consensus 1 ~~~~~~~~~~~~~~~G~v~~~~g~~~~~~~s~p~~~~~~-~G~nPeeLLl 49 (135)
T TIGR03562 1 RTASAVWEGDLKEGKGTISTQSGALSETPYSFKTRFEDG-PGTNPEELIA 49 (135)
T ss_pred CceEEEecCCCccCceEEEeCCCceeccccccCcccCCC-CCCCHHHHHH
Confidence 3444444434 56679999999988 9988888332232 6889999843
No 24
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=39.56 E-value=15 Score=28.48 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=11.0
Q ss_pred ccCCcEEEeccc
Q psy11035 57 TLDCQIILGNTY 68 (77)
Q Consensus 57 ~~g~~iiL~NtY 68 (77)
+.|++||.+|||
T Consensus 64 eAGADiIeTNTF 75 (311)
T COG0646 64 EAGADIIETNTF 75 (311)
T ss_pred hccCcEEEecCC
Confidence 479999999998
No 25
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=39.38 E-value=16 Score=27.29 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=29.2
Q ss_pred CeeEEEEEcCCeeecCCeeeeecc-cCccccc--------ChHHHhccCCcEEE--eccccccc
Q psy11035 20 NARTSVMTLPHHDVETPVFMPVGT-KGTIKGI--------LPQQLETLDCQIIL--GNTYHLGL 72 (77)
Q Consensus 20 ~aR~G~l~t~hG~ieTP~FmPVgT-~g~vK~l--------t~~~l~~~g~~iiL--~NtYHL~~ 72 (77)
++|.|.++.+-=.+..|-|-=+-+ +...+.= ...-|++.|++.|+ +||-|.+.
T Consensus 27 ~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~ 90 (230)
T COG1794 27 RAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVA 90 (230)
T ss_pred HHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHH
Confidence 456666666655555555533311 1111111 12235678999666 99999874
No 26
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.18 E-value=21 Score=28.27 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.2
Q ss_pred HHHhccCCcEEEecccccccc
Q psy11035 53 QQLETLDCQIILGNTYHLGLK 73 (77)
Q Consensus 53 ~~l~~~g~~iiL~NtYHL~~r 73 (77)
.++.+.|+++|++|+.++|+.
T Consensus 297 ~~~~~~G~~vI~s~~~~~YlD 317 (445)
T cd06569 297 YKLANKGYDVVLSNATNLYFD 317 (445)
T ss_pred HHHHHCCCCEEEeCCCcEEEe
Confidence 456788999999999999984
No 27
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=39.07 E-value=23 Score=28.63 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=31.6
Q ss_pred eecCCeeeeecccCcccccChHHHhcc-CCcEEEeccccc
Q psy11035 32 DVETPVFMPVGTKGTIKGILPQQLETL-DCQIILGNTYHL 70 (77)
Q Consensus 32 ~ieTP~FmPVgT~g~vK~lt~~~l~~~-g~~iiL~NtYHL 70 (77)
.++.=.+||.|-..--=..++++++.+ .+++++.|.|+|
T Consensus 20 ~~~v~~l~p~g~dph~y~~~~~d~~~~~~ad~~~~~g~~l 59 (479)
T TIGR03772 20 RAAVTSLVPDGADPHTYEPSLRDVRDVVYADVAFSNYLLL 59 (479)
T ss_pred eEEEEEecCCCCCcccCCCCHHHHHHHhhCCEEEEccccc
Confidence 456667899997666668999999875 899999997776
No 28
>KOG2250|consensus
Probab=38.44 E-value=29 Score=28.74 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=25.5
Q ss_pred eecCCeeeeecccCcccccChHHHhccCCcEEE
Q psy11035 32 DVETPVFMPVGTKGTIKGILPQQLETLDCQIIL 64 (77)
Q Consensus 32 ~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL 64 (77)
.=+.-+|+|+|+++.|..=...+|.+-||.+|+
T Consensus 331 v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~Iv 363 (514)
T KOG2250|consen 331 VEKCDILVPCATQNEITGENAKALVAKGCKYIV 363 (514)
T ss_pred HhhCcEEeecCccCcccHhhHHHHHhcCCcEEE
Confidence 345668999999977766666777778888887
No 29
>PLN02629 powdery mildew resistance 5
Probab=35.62 E-value=23 Score=28.01 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=16.1
Q ss_pred cCCcEEEeccccccccCC
Q psy11035 58 LDCQIILGNTYHLGLKPV 75 (77)
Q Consensus 58 ~g~~iiL~NtYHL~~rPG 75 (77)
.|+++++-||||-+.++|
T Consensus 204 ~~~DvlVfntghWw~~~~ 221 (387)
T PLN02629 204 RDADVLIFNTGHWWSHQG 221 (387)
T ss_pred ccCCEEEEeCccccCCCC
Confidence 478999999999999886
No 30
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=33.28 E-value=25 Score=28.83 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=12.1
Q ss_pred ccCCcEEEeccccc
Q psy11035 57 TLDCQIILGNTYHL 70 (77)
Q Consensus 57 ~~g~~iiL~NtYHL 70 (77)
+.|+++|++|||-.
T Consensus 54 ~AGAdvi~TnTy~a 67 (612)
T PRK08645 54 EAGADVIQTNTFGA 67 (612)
T ss_pred HhCCCEEecCcccc
Confidence 57999999999953
No 31
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=31.74 E-value=27 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=23.5
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEEeccc
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTY 68 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtY 68 (77)
|..=+|||+.|... -.+.++.+|+++||.+.+
T Consensus 98 i~a~IvMP~~tp~~----Kv~a~r~~GaeVil~g~~ 129 (347)
T COG1171 98 IKATIVMPETTPKI----KVDATRGYGAEVILHGDN 129 (347)
T ss_pred CCEEEEecCCCcHH----HHHHHHhcCCEEEEECCC
Confidence 66668999996322 246779999999996654
No 32
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=30.89 E-value=35 Score=27.63 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=22.9
Q ss_pred cCCeeeeecccCcccccChHHHhccCCcEEE
Q psy11035 34 ETPVFMPVGTKGTIKGILPQQLETLDCQIIL 64 (77)
Q Consensus 34 eTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL 64 (77)
+--+|+|.++++.+..-+.+.|-+.+|.+|.
T Consensus 320 ~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~ 350 (454)
T PTZ00079 320 PCDIAFPCATQNEINLEDAKLLIKNGCKLVA 350 (454)
T ss_pred CccEEEeccccccCCHHHHHHHHHcCCeEEE
Confidence 3448999999888665555555566999987
No 33
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=30.72 E-value=40 Score=25.57 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=21.5
Q ss_pred ChHHHhccCCcEEEeccccccccCC
Q psy11035 51 LPQQLETLDCQIILGNTYHLGLKPV 75 (77)
Q Consensus 51 t~~~l~~~g~~iiL~NtYHL~~rPG 75 (77)
...++.+.|.++|++|.-++|+..|
T Consensus 233 ~~~~~~~~G~~vI~s~~~~~Yld~~ 257 (348)
T cd06562 233 ELKNVLAAGYKVILSSYDFWYLDCG 257 (348)
T ss_pred HHHHHHHCCCCEEEeCCCcEEEeec
Confidence 4567888999999999999998765
No 34
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.97 E-value=45 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=20.1
Q ss_pred hHHHhccCCcEEEeccccccccCC
Q psy11035 52 PQQLETLDCQIILGNTYHLGLKPV 75 (77)
Q Consensus 52 ~~~l~~~g~~iiL~NtYHL~~rPG 75 (77)
..++.+.|.++|++|..++|+..+
T Consensus 220 ~~~~~~~G~~vI~s~~~~~YlD~~ 243 (329)
T cd06568 220 AAAALDKGAKVILSPADKAYLDMK 243 (329)
T ss_pred HHHHHHCCCCEEEeCCCcEEEecC
Confidence 456778899999999999998653
No 35
>PRK07475 hypothetical protein; Provisional
Probab=29.39 E-value=24 Score=25.53 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=13.0
Q ss_pred hccCCcEEE--eccccccc
Q psy11035 56 ETLDCQIIL--GNTYHLGL 72 (77)
Q Consensus 56 ~~~g~~iiL--~NtYHL~~ 72 (77)
++.||+.|. +|+.|++.
T Consensus 75 ~~~G~d~I~~~Cgt~~~~~ 93 (245)
T PRK07475 75 EAEGVRAITTSCGFLALFQ 93 (245)
T ss_pred HHcCCCEEEechHHHHHHH
Confidence 356899776 89988875
No 36
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=28.78 E-value=39 Score=21.93 Aligned_cols=16 Identities=6% Similarity=0.248 Sum_probs=14.3
Q ss_pred cccChHHHhccCCcEE
Q psy11035 48 KGILPQQLETLDCQII 63 (77)
Q Consensus 48 K~lt~~~l~~~g~~ii 63 (77)
+.|+.+||++.||++.
T Consensus 71 ~ELsae~m~~~ga~l~ 86 (93)
T PF09652_consen 71 RELSAEQMRACGARLE 86 (93)
T ss_pred CcccHHHHHhcCCEEE
Confidence 5899999999999985
No 37
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=28.69 E-value=76 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=22.4
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEE-ecc
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIIL-GNT 67 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL-~Nt 67 (77)
|..|.+.-+...+.--.++.++|+++|+++|+ +|+
T Consensus 201 ~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~ 236 (292)
T PRK11320 201 VKVPILANITEFGATPLFTTEELASAGVAMVLYPLS 236 (292)
T ss_pred cCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChH
Confidence 45676543433333234789999999999776 443
No 38
>PF10927 DUF2738: Protein of unknown function (DUF2738); InterPro: IPR024416 This is a family of plant and viral proteins whose function is unknown.
Probab=28.19 E-value=93 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=29.4
Q ss_pred CceeEEEEeecCCCCeeEEEEEcCCe------eecCCeeeeecccC
Q psy11035 6 RPLQFKVLAECPVSNARTSVMTLPHH------DVETPVFMPVGTKG 45 (77)
Q Consensus 6 ~~~~F~i~~~~~~~~aR~G~l~t~hG------~ieTP~FmPVgT~g 45 (77)
..|.|.=........+|+..|.+.++ .|+||.||+.|=++
T Consensus 6 ~~m~f~K~k~~n~~~~~ri~isyk~~~g~~pL~i~~p~lfSfGvq~ 51 (244)
T PF10927_consen 6 DKMIFSKPKTKNVSNKKRINISYKAKDGIEPLIIQTPRLFSFGVQD 51 (244)
T ss_pred cEEEEecccccccCCceEEEEeecCCCCccceEEecccceeecccc
Confidence 34556554333345788889999998 79999999999554
No 39
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=27.82 E-value=32 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.879 Sum_probs=13.9
Q ss_pred CcEEEecccc--ccccCCCC
Q psy11035 60 CQIILGNTYH--LGLKPVEK 77 (77)
Q Consensus 60 ~~iiL~NtYH--L~~rPG~~ 77 (77)
-+++|+.||- |-|+||+|
T Consensus 39 GnLLIG~AYT~~m~L~PGdE 58 (71)
T PF14250_consen 39 GNLLIGSAYTKQMGLKPGDE 58 (71)
T ss_pred CCEEEcHHHHHHhCCCCCCE
Confidence 3788888884 67888875
No 40
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=27.38 E-value=42 Score=21.84 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=14.3
Q ss_pred cccChHHHhccCCcEE
Q psy11035 48 KGILPQQLETLDCQII 63 (77)
Q Consensus 48 K~lt~~~l~~~g~~ii 63 (77)
+.++.++|+++||++.
T Consensus 71 ~Elsae~m~~~ga~l~ 86 (93)
T TIGR02620 71 TELEAEQLKACDAQLE 86 (93)
T ss_pred CcccHHHHHhcCcEEE
Confidence 4899999999999985
No 41
>PRK10200 putative racemase; Provisional
Probab=26.13 E-value=37 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=15.7
Q ss_pred HHHhccCCcEEE--eccccccc
Q psy11035 53 QQLETLDCQIIL--GNTYHLGL 72 (77)
Q Consensus 53 ~~l~~~g~~iiL--~NtYHL~~ 72 (77)
+.|++.||+.|+ +||=|.+.
T Consensus 69 ~~L~~~g~~~iviaCNTah~~~ 90 (230)
T PRK10200 69 LGLQRAGAEGIVLCTNTMHKVA 90 (230)
T ss_pred HHHHHcCCCEEEECCchHHHHH
Confidence 456788999666 99999874
No 42
>PHA02127 hypothetical protein
Probab=25.57 E-value=38 Score=19.93 Aligned_cols=26 Identities=42% Similarity=0.519 Sum_probs=16.8
Q ss_pred CeeeeecccCcccccChHHHhccCCcEEEec
Q psy11035 36 PVFMPVGTKGTIKGILPQQLETLDCQIILGN 66 (77)
Q Consensus 36 P~FmPVgT~g~vK~lt~~~l~~~g~~iiL~N 66 (77)
-..|||||.=++|.- -.+.+++|--|
T Consensus 31 d~m~pigt~fpikdt-----v~l~adviqln 56 (57)
T PHA02127 31 DPMLPVGTEFPIKDT-----VTLDADVIQLN 56 (57)
T ss_pred Cccccccccccccce-----EEeeeeEEEec
Confidence 357999999888832 13445666555
No 43
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=25.39 E-value=52 Score=24.31 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.3
Q ss_pred hHHHhccCCcEEEeccccccc
Q psy11035 52 PQQLETLDCQIILGNTYHLGL 72 (77)
Q Consensus 52 ~~~l~~~g~~iiL~NtYHL~~ 72 (77)
..++.+.|.++|++|.+.||+
T Consensus 220 ~~~~~~~G~~vi~s~~~yly~ 240 (303)
T cd02742 220 LPEAAAKGFPVILSNGYYLDI 240 (303)
T ss_pred HHHHHHCCCCEEEeCCceeee
Confidence 356788999999999999987
No 44
>PF06206 CpeT: CpeT/CpcT family (DUF1001); InterPro: IPR010404 This family consists of proteins of unknown function. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the N-terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. This suggests that this protein may be involved in some aspect of a photosynthetic lifestyle.
Probab=24.08 E-value=65 Score=22.42 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=35.8
Q ss_pred eeEEEEEcC-CeeecCCeeeeecc---------cCcccccChHHHhcc-CCcEEE---eccccccccCC
Q psy11035 21 ARTSVMTLP-HHDVETPVFMPVGT---------KGTIKGILPQQLETL-DCQIIL---GNTYHLGLKPV 75 (77)
Q Consensus 21 aR~G~l~t~-hG~ieTP~FmPVgT---------~g~vK~lt~~~l~~~-g~~iiL---~NtYHL~~rPG 75 (77)
-|+=+|.-. .+.|+.=.|..--+ ....+.|++++|..+ ||.+++ +++|+=...||
T Consensus 59 qri~~~~~~~~~~i~~~nY~l~d~~~~~ga~~~p~~l~~l~~~~L~~~~gC~~~~~~~~~~f~G~~~pg 127 (179)
T PF06206_consen 59 QRIHRIVPVPDGSIEVENYKLKDPERFAGAGRDPELLKSLTPEDLELLPGCDMIFTRQGEGFHGSVEPG 127 (179)
T ss_pred eeEEEEEecCCCeEEEEEeccCCHHHHCCcccChhHhccCCHHHhhccCCCeEEEEEcCCeeEEEcCCC
Confidence 344344433 66777666655221 223468999999887 999888 56777777776
No 45
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=23.62 E-value=27 Score=23.42 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=8.5
Q ss_pred eecCCeeeeecc
Q psy11035 32 DVETPVFMPVGT 43 (77)
Q Consensus 32 ~ieTP~FmPVgT 43 (77)
.=|||.|||..-
T Consensus 16 ~~ET~~~MPl~i 27 (120)
T PF02772_consen 16 CDETPELMPLPI 27 (120)
T ss_dssp ETTSTTSS-HHH
T ss_pred cCCCCccCChHH
Confidence 358999999863
No 46
>PRK13772 formimidoylglutamase; Provisional
Probab=23.54 E-value=39 Score=25.31 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=17.9
Q ss_pred ecCCeeee-ecccCcccccChHHHhcc
Q psy11035 33 VETPVFMP-VGTKGTIKGILPQQLETL 58 (77)
Q Consensus 33 ieTP~FmP-VgT~g~vK~lt~~~l~~~ 58 (77)
+--|+|+| |+|.. .-||++.|+.++
T Consensus 249 ~lDps~aPGvgtP~-pgGlt~~e~~~i 274 (314)
T PRK13772 249 VLPAAVAPGVSAPA-AYGVPLPVVEEI 274 (314)
T ss_pred CcCcccCCCCCCCC-CCCCCHHHHHHH
Confidence 45689999 67433 369999998653
No 47
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.83 E-value=75 Score=21.74 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=20.4
Q ss_pred CcccccChHHHhccCCcEEEeccc
Q psy11035 45 GTIKGILPQQLETLDCQIILGNTY 68 (77)
Q Consensus 45 g~vK~lt~~~l~~~g~~iiL~NtY 68 (77)
|..+.+..|.|.++..++||++.+
T Consensus 44 g~~~~~n~E~i~~l~PDlIi~~~~ 67 (235)
T cd01149 44 GYMRQLSAEGVLSLKPTLVIASDE 67 (235)
T ss_pred CCccCcCHHHhhccCCCEEEEcCC
Confidence 556778999999999999998765
No 48
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=22.20 E-value=1.2e+02 Score=22.88 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=20.2
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEE
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIIL 64 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL 64 (77)
|..|...-+...+.--.++.+||.++|+++|+
T Consensus 196 i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~ 227 (285)
T TIGR02317 196 VKVPLLANMTEFGKTPLFTADELREAGYKMVI 227 (285)
T ss_pred cCCCEEEEeccCCCCCCCCHHHHHHcCCcEEE
Confidence 44566433332232234789999999999766
No 49
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=21.75 E-value=50 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.3
Q ss_pred eeeeecccCccccc-ChHHHhccCCc-EEEeccccc
Q psy11035 37 VFMPVGTKGTIKGI-LPQQLETLDCQ-IILGNTYHL 70 (77)
Q Consensus 37 ~FmPVgT~g~vK~l-t~~~l~~~g~~-iiL~NtYHL 70 (77)
+.+||.--|-|..+ +..++.+.|++ +++++++|-
T Consensus 183 ~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 183 SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 46888888888765 33455678988 555666663
No 50
>KOG1816|consensus
Probab=21.64 E-value=33 Score=26.69 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCceeEEEEeecCCCCeeEEEEE--cCCeeecCCeee-------------------eecccCcccccChHHH
Q psy11035 5 VRPLQFKVLAECPVSNARTSVMT--LPHHDVETPVFM-------------------PVGTKGTIKGILPQQL 55 (77)
Q Consensus 5 ~~~~~F~i~~~~~~~~aR~G~l~--t~hG~ieTP~Fm-------------------PVgT~g~vK~lt~~~l 55 (77)
..+|-|++...+....--+|.|. -..|.|-.|.+| |+||...++.-+.+-|
T Consensus 56 ~yPMlFkLtn~~~~r~THcGVLEF~AeEG~vyLP~WMmq~L~le~gdlv~i~~v~lpkgtyvKLqP~s~dFL 127 (308)
T KOG1816|consen 56 TYPMLFKLTNVDVDRVTHCGVLEFTAEEGRVYLPYWMMQNLLLEEGDLVRIRSVTLPKGTYVKLQPHSVDFL 127 (308)
T ss_pred CCceEEEEeccccceeeeeeEEEEEecCceEEeehHhhhhccCCCCCeEEEEEeeccccceeeeccCCCCcc
Confidence 34688999888764444456655 677888888876 6777666654444433
No 51
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=21.59 E-value=1.2e+02 Score=22.99 Aligned_cols=32 Identities=13% Similarity=0.382 Sum_probs=20.5
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEE
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIIL 64 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL 64 (77)
+.-|.+.-|...+.-..++.+||+++|+++|+
T Consensus 200 ~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~ 231 (294)
T TIGR02319 200 IDAPLLANMVEGGKTPWLTTKELESIGYNLAI 231 (294)
T ss_pred cCCCeeEEEEecCCCCCCCHHHHHHcCCcEEE
Confidence 34565322332233346789999999999776
No 52
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=21.12 E-value=82 Score=23.34 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=28.5
Q ss_pred eeeeecccCcccccChHHHhcc-CCcEEEeccccc
Q psy11035 37 VFMPVGTKGTIKGILPQQLETL-DCQIILGNTYHL 70 (77)
Q Consensus 37 ~FmPVgT~g~vK~lt~~~l~~~-g~~iiL~NtYHL 70 (77)
..+|.|....--..+|++++.+ ++++|+.|...|
T Consensus 58 ~iv~~g~dpH~yepsp~di~~i~~ADliv~nG~~l 92 (303)
T COG0803 58 SLVPPGADPHSYEPTPSDIAKLRKADLIVYNGLGL 92 (303)
T ss_pred EecCCCCCCcCCCCCHHHHHHHHhCCEEEEcCCCh
Confidence 3788897777779999999875 899999998776
No 53
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=20.51 E-value=1.1e+02 Score=22.45 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=18.1
Q ss_pred eeeeecccCcccccChHH-------HhccCCc-EEEecc
Q psy11035 37 VFMPVGTKGTIKGILPQQ-------LETLDCQ-IILGNT 67 (77)
Q Consensus 37 ~FmPVgT~g~vK~lt~~~-------l~~~g~~-iiL~Nt 67 (77)
+||+ |-.-...+-+..+ ++++|++ +|++||
T Consensus 54 ~~l~-Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna 91 (237)
T TIGR01698 54 LVLG-GRTHAYEGGDARAVVHPVRTARATGAETLILTNA 91 (237)
T ss_pred EEEc-CCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcc
Confidence 4666 5444444444444 5779999 455776
No 54
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=20.48 E-value=39 Score=30.52 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.0
Q ss_pred hccCCcEEEecccc
Q psy11035 56 ETLDCQIILGNTYH 69 (77)
Q Consensus 56 ~~~g~~iiL~NtYH 69 (77)
-+.|++||.+|||-
T Consensus 75 l~AGADII~TNTF~ 88 (1229)
T PRK09490 75 LEAGADIIETNTFN 88 (1229)
T ss_pred HHHhCceeecCCCC
Confidence 35799999999994
No 55
>PRK13776 formimidoylglutamase; Provisional
Probab=20.12 E-value=50 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=17.8
Q ss_pred ecCCeeee-ecccCcccccChHHHhcc
Q psy11035 33 VETPVFMP-VGTKGTIKGILPQQLETL 58 (77)
Q Consensus 33 ieTP~FmP-VgT~g~vK~lt~~~l~~~ 58 (77)
+--|+||| |+|. ..-||++.|+.++
T Consensus 250 ~lDps~aPGtgtP-~pgGLt~~e~~~i 275 (318)
T PRK13776 250 VLPAAVAPGVSAP-AARGVSLWVIEPL 275 (318)
T ss_pred CcCcccCCCCCCC-CCCCCCHHHHHHH
Confidence 44599999 6643 3369999998653
No 56
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=20.03 E-value=1.4e+02 Score=21.49 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=20.7
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEE-ec
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIIL-GN 66 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL-~N 66 (77)
+..|...-..-.+ +.++.++|+++|+..++ +|
T Consensus 195 ~~~Pl~~~~~~~~--~~~~~~~l~~lG~~~v~~~~ 227 (243)
T cd00377 195 PDVPLNVNMTPGG--NLLTVAELAELGVRRVSYGL 227 (243)
T ss_pred CCCCEEEEecCCC--CCCCHHHHHHCCCeEEEECh
Confidence 4566654433111 24899999999999766 44
No 57
>KOG1250|consensus
Probab=20.03 E-value=65 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.4
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEEe
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIILG 65 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~ 65 (77)
|.-=+.||+.|. .+..+-++++|+++||.
T Consensus 138 ipaTIVmP~~tp----~~kiq~~~nlGA~Vil~ 166 (457)
T KOG1250|consen 138 IPATIVMPVATP----LMKIQRCRNLGATVILS 166 (457)
T ss_pred CceEEEecCCCh----HHHHHHHhccCCEEEEe
Confidence 444467999853 45567889999999984
Done!