Query psy11035
Match_columns 77
No_of_seqs 148 out of 1052
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 16:27:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bld_A Queuine tRNA-ribosyltra 100.0 4.1E-30 1.4E-34 196.3 5.2 71 5-77 11-81 (386)
2 2ash_A Queuine tRNA-ribosyltra 100.0 9.7E-30 3.3E-34 194.3 5.0 69 7-77 12-80 (381)
3 1iq8_A Archaeosine tRNA-guanin 99.9 1.1E-27 3.8E-32 189.5 6.0 73 1-76 1-73 (582)
4 1yht_A DSPB; beta barrel, hydr 55.2 6 0.00021 29.1 2.1 26 51-76 258-283 (367)
5 1lt8_A Betaine-homocysteine me 45.9 8.1 0.00028 29.2 1.5 14 57-70 65-78 (406)
6 4fcc_A Glutamate dehydrogenase 34.5 19 0.00066 27.8 2.1 33 33-65 316-348 (450)
7 1q7z_A 5-methyltetrahydrofolat 33.5 14 0.00049 28.9 1.2 13 57-69 55-67 (566)
8 3eoo_A Methylisocitrate lyase; 29.7 41 0.0014 24.4 3.0 35 33-67 206-241 (298)
9 3lye_A Oxaloacetate acetyl hyd 28.1 44 0.0015 24.4 2.9 31 35-65 216-246 (307)
10 1bgv_A Glutamate dehydrogenase 25.4 32 0.0011 26.5 1.8 32 33-64 312-343 (449)
11 3fa4_A 2,3-dimethylmalate lyas 24.7 54 0.0019 23.8 2.9 30 35-64 208-237 (302)
12 3eoi_A PILM; structural genomi 22.1 16 0.00056 23.5 -0.3 24 19-42 92-118 (124)
13 3ih1_A Methylisocitrate lyase; 21.6 77 0.0026 23.0 3.2 20 48-67 225-245 (305)
14 1hg3_A Triosephosphate isomera 21.5 55 0.0019 22.6 2.3 28 39-67 60-96 (225)
15 1w0m_A TIM, triosephosphate is 20.3 53 0.0018 22.8 2.0 28 39-67 57-93 (226)
No 1
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Probab=99.96 E-value=4.1e-30 Score=196.28 Aligned_cols=71 Identities=38% Similarity=0.649 Sum_probs=67.2
Q ss_pred CCceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 5 VRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 5 ~~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
.+.|+|+|+++| ++||+|+|+|+||+|+||+||||||+|+||+|++++|+++|+||||+||||||+|||.|
T Consensus 11 ~~~m~F~i~~~~--~~aR~G~l~t~hg~i~TP~fmpVgt~gtvk~lt~~~l~~~g~~iil~Ntyhl~lrPg~~ 81 (386)
T 3bld_A 11 RPRFSFSIAARE--GKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAE 81 (386)
T ss_dssp CCSCEEEEEEEE--TTEEEEEEEETTEEEEESEECCEESSSSBTTCCHHHHHHTTCSCEEECHHHHHHTTCHH
T ss_pred ccceEEEEEEEE--CCeeeEEEEeCCeeeECCeeEEeecCCcCCcCCHHHHHHcCCCEEecchHHHhhcCcHH
Confidence 356889999999 58999999999999999999999999999999999999999999999999999999963
No 2
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima}
Probab=99.96 E-value=9.7e-30 Score=194.28 Aligned_cols=69 Identities=48% Similarity=0.724 Sum_probs=65.5
Q ss_pred ceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCCC
Q psy11035 7 PLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVEK 77 (77)
Q Consensus 7 ~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~~ 77 (77)
-|.||+++++. +||+|+|+|+||+|+||+||||||+|+||+|++++|+++|+||||+||||||+|||.+
T Consensus 12 ~~~~~~~~~~~--~aR~G~l~t~hg~i~TP~fmPVgt~gtvk~lt~~~l~~~g~~iiL~NtyhL~lrPg~~ 80 (381)
T 2ash_A 12 HMEFEVKKTFG--KARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKPGVE 80 (381)
T ss_dssp -CEEEEEEEET--TEEEEEEEETTEEEEESEEEEEESSSSCTTCCHHHHHHHTCSCEEECCHHHHHTTCHH
T ss_pred ceeEEEEcCCC--ceeeEEEEECCeeEECCeEEEeecCCcCCcCCHHHHHHcCCCEEehhHHHHhhCCcHH
Confidence 47899999985 8999999999999999999999999999999999999999999999999999999953
No 3
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=99.94 E-value=1.1e-27 Score=189.52 Aligned_cols=73 Identities=26% Similarity=0.363 Sum_probs=65.7
Q ss_pred CCCCCCceeEEEEeecCCCCeeEEEEEcCCeeecCCeeeeecccCcccccChHHHhccCCcEEEeccccccccCCC
Q psy11035 1 MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNTYHLGLKPVE 76 (77)
Q Consensus 1 ~~~~~~~~~F~i~~~~~~~~aR~G~l~t~hG~ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~NtYHL~~rPG~ 76 (77)
|+...+.|+|+|+++|. +||+|+|+|+||+|+||+|||||| |+||+|++++|+++|+|+||+||||||+|||.
T Consensus 1 ~~~~~~~~~F~i~~~~~--~aR~G~l~t~hg~i~TP~fmpvgt-~~vk~lt~~~l~~~g~~iil~Ntyhl~lrp~~ 73 (582)
T 1iq8_A 1 MSRGDKMLKFEIKARDG--AGRIGKLEVNGKKIETPAIMPVVN-PKQMVVEPKELEKMGFEIIITNSYIIYKDEEL 73 (582)
T ss_dssp -----CCEEEEEEEEET--TEEEEEEEETTEEEEESEEEEBCC-SSSCSSCHHHHHHTTCCEEEEEHHHHHHCHHH
T ss_pred CCCCCCceEEEEEEeeC--CceEEEEEeCCeeeeCCceEeecC-CcCCCCCHHHHHhcCCCceecchhheeeCcch
Confidence 66777889999999984 899999999999999999999999 99999999999999999999999999999984
No 4
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=55.16 E-value=6 Score=29.15 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.1
Q ss_pred ChHHHhccCCcEEEeccccccccCCC
Q psy11035 51 LPQQLETLDCQIILGNTYHLGLKPVE 76 (77)
Q Consensus 51 t~~~l~~~g~~iiL~NtYHL~~rPG~ 76 (77)
.+.++.+.|.++|++|.+.||+-|+.
T Consensus 258 ~~~~~~~~G~~vi~s~~~~lY~~~~~ 283 (367)
T 1yht_A 258 SLPELLAKGFTVLNYNSYYLYIVPKA 283 (367)
T ss_dssp CHHHHHHTTCCEEECCHHHHEECCCC
T ss_pred hHHHHHHCCCeEEEcCCcceEEeCCC
Confidence 45678889999999999999987763
No 5
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=45.91 E-value=8.1 Score=29.24 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=12.3
Q ss_pred ccCCcEEEeccccc
Q psy11035 57 TLDCQIILGNTYHL 70 (77)
Q Consensus 57 ~~g~~iiL~NtYHL 70 (77)
+.|++||.+|||-.
T Consensus 65 ~AGAdII~TNTf~A 78 (406)
T 1lt8_A 65 RAGSNVMQTFTFYA 78 (406)
T ss_dssp HTTCSEEECSCTTC
T ss_pred HhCccceecccccc
Confidence 57999999999964
No 6
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=34.48 E-value=19 Score=27.77 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=26.9
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEEe
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIILG 65 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~ 65 (77)
++--+|+|+++++.+..=+.+.|++-||.+|.-
T Consensus 316 ~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaE 348 (450)
T 4fcc_A 316 VPVDIALPCATQNELDVDAAHQLIANGVKAVAE 348 (450)
T ss_dssp SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEEC
T ss_pred CCccEEeeccccccccHHHHHHHHhcCceEEec
Confidence 456789999999987766677788888999886
No 7
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=33.47 E-value=14 Score=28.85 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.5
Q ss_pred ccCCcEEEecccc
Q psy11035 57 TLDCQIILGNTYH 69 (77)
Q Consensus 57 ~~g~~iiL~NtYH 69 (77)
+.|++||.+|||=
T Consensus 55 ~AGAdii~TnTf~ 67 (566)
T 1q7z_A 55 ESGSDVILTNTFG 67 (566)
T ss_dssp HHTCSEEECSCTT
T ss_pred HhhcceeecCccc
Confidence 4799999999994
No 8
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=29.65 E-value=41 Score=24.38 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=22.7
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEE-ecc
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIIL-GNT 67 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL-~Nt 67 (77)
+..|...-+...|.-..++.+||+++|+.+|+ +|+
T Consensus 206 ~~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~ 241 (298)
T 3eoo_A 206 VKVPILANLTEFGSTPLFTLDELKGANVDIALYCCG 241 (298)
T ss_dssp HCSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSH
T ss_pred cCCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchH
Confidence 34566543333344346889999999999776 443
No 9
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=28.06 E-value=44 Score=24.37 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred CCeeeeecccCcccccChHHHhccCCcEEEe
Q psy11035 35 TPVFMPVGTKGTIKGILPQQLETLDCQIILG 65 (77)
Q Consensus 35 TP~FmPVgT~g~vK~lt~~~l~~~g~~iiL~ 65 (77)
.|...-+...+.-..++.+||+++|+++|+.
T Consensus 216 ~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~ 246 (307)
T 3lye_A 216 WPLLLNSVENGHSPLITVEEAKAMGFRIMIF 246 (307)
T ss_dssp SCBEEEEETTSSSCCCCHHHHHHHTCSEEEE
T ss_pred CceeEEeecCCCCCCCCHHHHHHcCCeEEEE
Confidence 5664433323333468899999999998863
No 10
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=25.38 E-value=32 Score=26.47 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=27.3
Q ss_pred ecCCeeeeecccCcccccChHHHhccCCcEEE
Q psy11035 33 VETPVFMPVGTKGTIKGILPQQLETLDCQIIL 64 (77)
Q Consensus 33 ieTP~FmPVgT~g~vK~lt~~~l~~~g~~iiL 64 (77)
++--+|+|.++.+.+..-+..+|++-||++|.
T Consensus 312 ~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~ 343 (449)
T 1bgv_A 312 QKVDIIMPCATQNDVDLEQAKKIVANNVKYYI 343 (449)
T ss_dssp SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEE
T ss_pred CCcceeeccccccccchhhHHHHHhcCCeEEE
Confidence 45568999999999988888888888999887
No 11
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=24.68 E-value=54 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCeeeeecccCcccccChHHHhccCCcEEE
Q psy11035 35 TPVFMPVGTKGTIKGILPQQLETLDCQIIL 64 (77)
Q Consensus 35 TP~FmPVgT~g~vK~lt~~~l~~~g~~iiL 64 (77)
.|...-+.-.+.-..++.+||+++|+.+|+
T Consensus 208 ~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~ 237 (302)
T 3fa4_A 208 WPLLLNMVEHGATPSISAAEAKEMGFRIII 237 (302)
T ss_dssp SCEEEECCTTSSSCCCCHHHHHHHTCSEEE
T ss_pred CceeEEEecCCCCCCCCHHHHHHcCCCEEE
Confidence 465432222233346789999999999877
No 12
>3eoi_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.52A {Escherichia coli}
Probab=22.10 E-value=16 Score=23.52 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=19.5
Q ss_pred CCeeEEEEEcCCee---ecCCeeeeec
Q psy11035 19 SNARTSVMTLPHHD---VETPVFMPVG 42 (77)
Q Consensus 19 ~~aR~G~l~t~hG~---ieTP~FmPVg 42 (77)
+.++-|+|..+.|. |.-|+++|-|
T Consensus 92 G~~~~G~L~~~~g~~~~i~lPa~Ip~G 118 (124)
T 3eoi_A 92 ARVENGRLLDTHGRRISITLPAVIPDQ 118 (124)
T ss_dssp EEEETTEEECTTSCBCCCCCCTTSCSS
T ss_pred EEecCCeEECCCCCcccCcCCCcCCCC
Confidence 35777899999986 8889998866
No 13
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=21.64 E-value=77 Score=22.98 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.0
Q ss_pred cccChHHHhccCCcEEE-ecc
Q psy11035 48 KGILPQQLETLDCQIIL-GNT 67 (77)
Q Consensus 48 K~lt~~~l~~~g~~iiL-~Nt 67 (77)
..++.+||+++|+.+|+ +|+
T Consensus 225 p~~~~~eL~~lGv~~v~~~~~ 245 (305)
T 3ih1_A 225 PYYSAEEFANMGFQMVIYPVT 245 (305)
T ss_dssp CCCCHHHHHHTTCSEEEECSH
T ss_pred CCCCHHHHHHcCCCEEEEchH
Confidence 46889999999999776 443
No 14
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=21.48 E-value=55 Score=22.63 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=19.9
Q ss_pred eeecccCcccc---------cChHHHhccCCcEEEecc
Q psy11035 39 MPVGTKGTIKG---------ILPQQLETLDCQIILGNT 67 (77)
Q Consensus 39 mPVgT~g~vK~---------lt~~~l~~~g~~iiL~Nt 67 (77)
+||+-|. +-. +++++++++||+.+|-+.
T Consensus 60 i~v~aQd-v~~~~~Ga~TGeis~~~l~~~Ga~~Vllgh 96 (225)
T 1hg3_A 60 IPVFAQH-IDPIKPGSHTGHVLPEAVKEAGAVGTLLNH 96 (225)
T ss_dssp SCBEESC-CCSCCSBSCTTCCCHHHHHHTTCCEEEESC
T ss_pred Cceeeee-CCcccCCCccCcccHHHHHHcCCCEEEECc
Confidence 5666555 433 348889999999888653
No 15
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=20.31 E-value=53 Score=22.76 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=19.8
Q ss_pred eeecccCccccc---------ChHHHhccCCcEEEecc
Q psy11035 39 MPVGTKGTIKGI---------LPQQLETLDCQIILGNT 67 (77)
Q Consensus 39 mPVgT~g~vK~l---------t~~~l~~~g~~iiL~Nt 67 (77)
+||+-|. +-.. ++++++++||+.+|-+.
T Consensus 57 i~v~aQd-v~~~~~Ga~TGeis~~~l~~~Ga~~Vllgh 93 (226)
T 1w0m_A 57 IPVYAQG-ADVEAGGAHTAHVSLENIKEAGGSGVILNH 93 (226)
T ss_dssp SCBEESC-CSBSSCSSCTTCCBHHHHHHHTCCEEEECC
T ss_pred CceEeeE-CChhhCCCccCCCCHHHHHHcCCCEEEEee
Confidence 5677555 4433 37889999999888653
Done!