RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11035
         (77 letters)



>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc
          genomics, joint center for structural genomics, JCSG;
          1.90A {Thermotoga maritima}
          Length = 381

 Score =  109 bits (275), Expect = 1e-30
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          +      ++F+V        AR  VM L H  VETPVFMPVGT  ++K + P+ LE    
Sbjct: 6  IHHHHHHMEFEVKKTF--GKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGA 63

Query: 61 QIILGNTYHLGLKP 74
          +IIL NT+HL LKP
Sbjct: 64 EIILSNTFHLMLKP 77


>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
          metal-binding, queuosine biosynthesis, tRNA processing;
          HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A*
          1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A*
          1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A*
          1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
          Length = 386

 Score =  104 bits (263), Expect = 4e-29
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
            F + A      ART  + +    + TP FMPVGT  T+K + P+ +      IILGNT
Sbjct: 14 FSFSIAARE--GKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNT 71

Query: 68 YHLGLKP 74
          YHL L+P
Sbjct: 72 YHLMLRP 78


>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
          riken structural genomics/proteomics initiative, RSGI;
          2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
          d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
          Length = 582

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 1  MSTQVRPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDC 60
          MS   + L+F++ A       R   + +    +ETP  MPV     +  + P++LE +  
Sbjct: 1  MSRGDKMLKFEIKARD--GAGRIGKLEVNGKKIETPAIMPVVNPKQMV-VEPKELEKMGF 57

Query: 61 QIILGNTYHLGLKP 74
          +II+ N+Y +    
Sbjct: 58 EIIITNSYIIYKDE 71


>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
           {Leptospira interrogans} PDB: 2rc6_A*
          Length = 314

 Score = 30.9 bits (70), Expect = 0.018
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 11  KVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILP 52
           K   E  ++        LP+ D    +   + T GT  GI P
Sbjct: 142 KPGDEVTMTGPSGKKFLLPNTDFSGDIMF-LAT-GT--GIAP 179


>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
           FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
           3lvb_A* 1jb9_A*
          Length = 311

 Score = 28.9 bits (65), Expect = 0.11
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 11  KVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILP 52
           K   +  ++     +M LP  D      M + T GT  G+ P
Sbjct: 137 KPGDKIQLTGPSGKIMLLPEEDPNATHIM-IAT-GT--GVAP 174


>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
            domain, mRNA turnover, RRN processing, RNA binding, DNA
            binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
          Length = 1155

 Score = 25.7 bits (55), Expect = 1.6
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 40   PVGTKGTIKGILPQQLETL-----DCQIILGNTYHLGLKP 74
            P+ +KGT+ G              D +II GN +   L+ 
Sbjct: 1082 PLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQT 1121


>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
           oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A
           {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB:
           1qay_A* 1qax_A* 1r7i_A 1t02_A*
          Length = 428

 Score = 24.6 bits (53), Expect = 4.2
 Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 3/28 (10%)

Query: 39  MPVGTKGTIKGILPQQLETLDCQIILGN 66
           MPVG  G      P    +L    ILG 
Sbjct: 323 MPVGLVGGATKTHPLAQLSLR---ILGV 347


>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3',
            R interference; 3.20A {Drosophila melanogaster}
          Length = 1140

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 40   PVGTKGTIKGILPQQ 54
            PVGTKGT+ GI P  
Sbjct: 1075 PVGTKGTVIGIHPVT 1089


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,091,307
Number of extensions: 50276
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 8
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)