RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11035
         (77 letters)



>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
          {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 92.6 bits (229), Expect = 7e-25
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 8  LQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILGNT 67
            F + A      ART  + +    + TP FMPVGT  T+K + P+ +      IILGNT
Sbjct: 4  FSFSIAARE--GKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNT 61

Query: 68 YHLGLKP 74
          YHL L+P
Sbjct: 62 YHLMLRP 68


>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
          transglycosylase, N-terminal domain {Archaeon
          Pyrococcus horikoshii [TaxId: 53953]}
          Length = 355

 Score = 92.2 bits (228), Expect = 9e-25
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 6  RPLQFKVLAECPVSNARTSVMTLPHHDVETPVFMPVGTKGTIKGILPQQLETLDCQIILG 65
          + L+F++ A       R   + +    +ETP  MPV     +  + P++LE +  +II+ 
Sbjct: 1  KMLKFEIKARD--GAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIIT 57

Query: 66 NTYHLGLKP 74
          N+Y +    
Sbjct: 58 NSYIIYKDE 66


>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 165

 Score = 23.7 bits (51), Expect = 3.0
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 54 QLETLDCQIILGNT 67
           L  +D   I G+ 
Sbjct: 66 ALTGVDYHAIPGSG 79


>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of
           HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 292

 Score = 23.3 bits (50), Expect = 3.6
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 14  AECPVSNARTSVMTLPHHDVETPVFMP---VGTKGTIKGILPQQ--LETLDCQ 61
                           + D+     MP   +GT G    +LPQQ  L+ L  Q
Sbjct: 194 VGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQ 246


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 260,967
Number of extensions: 9265
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)