BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11036
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 9 IVALWDIPSEAQVSTFTNHTT-IYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTV 67
++ +WDI + V H IY + DY +G D ++SGS D+TV
Sbjct: 146 LIRIWDIENRKIVMILQGHEQDIYSL---------DYFPSG-------DKLVSGSGDRTV 189
Query: 68 NVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLD--VCIWDMLGGGKLLHKF--- 122
++D R+ ++++ V +V P G ++ G LD V +WD G L+ +
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS-ETGFLVERLDSE 248
Query: 123 ----TCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155
T H +V S+ G+ ++S SLD K++ +
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 95 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 239
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 240 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 143 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 182
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 86
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 145
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 61
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 89 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 133
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 233
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 234 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 137 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 176
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 80
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 139
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 55
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 88 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 132
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 232
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 233 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 136 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 175
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 79
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 138
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 54
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 55 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 89 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 133
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 233
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 234 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 137 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 176
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 80
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 139
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 55
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 85 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 129
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 229
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 230 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 133 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 172
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 76
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 135
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 51
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 52 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 106 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 150
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 250
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 251 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 154 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 193
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 97
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 156
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 72
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 73 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 95 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 239
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 240 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 143 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 182
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 86
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 145
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 61
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 90 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 134
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 234
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 235 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 138 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 177
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 81
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 140
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 56
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 57 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 92 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYS--------------------KGKCLKTYTGH 236
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 237 KN--EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
+ G L H V+++ G ++S+S D +I W
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 179
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 83
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 142
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177
L+ H K V+S+ + G+ L S+S D KI+ G D
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD--------- 57
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
GK + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 94 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 138
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 238
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 239 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 142 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 181
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 85
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 144
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 60
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 61 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 92 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 236
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 237 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 140 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 179
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + IW G K + H ++ + +S L
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 83
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 142
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L ++S D KI+ G D G
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-----------GAYD---------G 58
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 92 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 236
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 237 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 140 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 179
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 83
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 142
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 58
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 92 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 236
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 237 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 140 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 179
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 83
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 142
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 58
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 95 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 239
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 240 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
GK L H V+++ G ++S+S D +I W
Sbjct: 143 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 182
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 86
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD+ G
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-KTG 145
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 61
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 111 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 155
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ TLK +WD GK L +T H
Sbjct: 216 PVSFVKFSPNGKYILAATLDN-------TLK------------LWDY-SKGKCLKTYTGH 255
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 256 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 157
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
+ GK L H V+++ G ++S+S D +I W
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 198
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 102
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 161
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 77
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 78 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 113 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 157
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ TLK +WD GK L +T H
Sbjct: 218 PVSFVKFSPNGKYILAATLDN-------TLK------------LWDY-SKGKCLKTYTGH 257
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 258 KN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 159
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
+ GK L H V+++ G ++S+S D +I W
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 200
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 104
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 163
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
K L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 121 KFTC--HHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
KFT H K V+S+ + G+ L S+S D KI+ G D G
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD---------G 79
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
K + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 80 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 44/224 (19%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
+ +WD+ S + T H+ +YV +P S++++SGS+D++V +
Sbjct: 92 LKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 70 YDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHK 127
+D ++ + ++ H PV +V G + V+ +C IWD G L +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 128 TVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCH 187
V+ + + GK +++A+LD+ K+++ + GK L +T H
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYS--------------------KGKCLKTYTGH 236
Query: 188 HKTVTSLCL-----ASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
C+ +GGK ++S S D+ I+ + V L
Sbjct: 237 KN--EKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 55 SDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
S++++S S DKT+ ++D S + ++ H + V P + V+G V IWD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 138
Query: 113 LGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIW 172
+ G L H V+++ G ++S+S D +I W
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI-------------------W 179
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
D G L + V+ + + GK +++A+LD+ K+++
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 27/178 (15%)
Query: 83 HGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRL 141
H V SV P+G + + IW G K + H ++ + +S L
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLL 83
Query: 142 ISASLDHHAKIYEM-------TLKTVSSF--------------TGGLD--VCIWDMLGGG 178
+SAS D KI+++ TLK S++ +G D V IWD + G
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKTG 142
Query: 179 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL-DYPSPVLSI 235
L H V+++ G ++S+S D +I++ + + TL D +P +S
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGG 177
L+ H K V+S+ + G+ L S+S D KI+ G D
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------GAYD--------- 57
Query: 178 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
GK + H ++ + +S L+SAS D KI+++ + + TL
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 28/196 (14%)
Query: 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG 104
VR SP + S S DKTV +++ H S V V P G +
Sbjct: 224 VRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD 282
Query: 105 -LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE------MTL 157
V +W+ G+LL T H +V + + G+ + SAS D K++ TL
Sbjct: 283 DKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL 340
Query: 158 ----------------KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201
+T++S + V +W+ G+LL T H +V + + G+
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQ 398
Query: 202 RLISASLDHHAKIYEM 217
+ SAS D K++
Sbjct: 399 TIASASDDKTVKLWNR 414
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 27/183 (14%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGG 116
+ S S DKTV +++ H S V V P G + V +W+ G
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NG 375
Query: 117 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE------MTL------------- 157
+LL T H +V + + G+ + SAS D K++ TL
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 435
Query: 158 ---KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214
+T++S + V +W+ G+LL T H +V + + G+ + SAS D K+
Sbjct: 436 PDDQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Query: 215 YEM 217
+
Sbjct: 494 WNR 496
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 28/196 (14%)
Query: 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG 104
VR SP + S S DKTV +++ H S V V P G +
Sbjct: 19 VRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 105 -LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE------MTL 157
V +W+ G+LL T H +V + + G+ + SAS D K++ TL
Sbjct: 78 DKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 135
Query: 158 ----------------KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201
+T++S + V +W+ G+LL T H +V + + G+
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 202 RLISASLDHHAKIYEM 217
+ SAS D K++
Sbjct: 194 TIASASDDKTVKLWNR 209
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 27/183 (14%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG-LDVCIWDMLGGG 116
+ S S DKTV +++ H S V V P G + V +W+ G
Sbjct: 154 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NG 211
Query: 117 KLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE------MTL------------- 157
+LL T H +V + + G+ + SAS D K++ TL
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR 271
Query: 158 ---KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKI 214
+T++S + V +W+ G+LL T H +V + + G+ + SAS D K+
Sbjct: 272 PDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Query: 215 YEM 217
+
Sbjct: 330 WNR 332
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 28/195 (14%)
Query: 45 VRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGG 104
VR SP + S S DKTV +++ H S V V P +
Sbjct: 388 VRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 105 -LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE------MTL 157
V +W+ G+LL T H +V + + G+ + SAS D K++ TL
Sbjct: 447 DKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504
Query: 158 ----------------KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGK 201
+T++S + V +W+ G+LL T H +V + + G+
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQ 562
Query: 202 RLISASLDHHAKIYE 216
+ SAS D K++
Sbjct: 563 TIASASSDKTVKLWN 577
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 115 GGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE------MTL----------- 157
G K ++ H +V + + G+ + SAS D K++ TL
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 64
Query: 158 -----KTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+T++S + V +W+ G+LL T H +V + + G+ + SAS D
Sbjct: 65 FSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 213 KIYEM 217
K++
Sbjct: 123 KLWNR 127
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 51 SPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIFVTGGGLDVC- 108
S + +I+ISGS D+T+ V++ + + + ++ H S V C+ V G D
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR---CMHLHEKRVVSGSRDATL 221
Query: 109 -IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLD-------------------H 148
+WD + G+ LH H V C+ G+R++S + D H
Sbjct: 222 RVWD-IETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Query: 149 HAKIYEMTLKTVSSFTGGLDVCI--WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISA 206
++Y + + +G LD I WD + G +H T H + + L L+S
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWD-VETGNCIHTLTGHQSLTSGMELKDN--ILVSG 335
Query: 207 SLDHHAKIYEMVNFSPVHTLDYPSP 231
+ D KI+++ + TL P+
Sbjct: 336 NADSTVKIWDIKTGQCLQTLQGPNK 360
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTV 67
+V +WD +E + T HT +YS D + V+SGS D ++
Sbjct: 259 FMVKVWDPETETCLHTLQGHTN------RVYSLQFDGIH-----------VVSGSLDTSI 301
Query: 68 NVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLD-VCIWDMLGGGKL--LHKFTC 124
V+D + + + ++ + S + L I V+G V IWD+ G L L
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 125 HHKTVTSLCLASGGKRLISASLDHHAKIYEM 155
H VT CL +I++S D K++++
Sbjct: 361 HQSAVT--CLQFNKNFVITSSDDGTVKLWDL 389
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGG 115
++SGS D T+ V+ + + + V H V S I ++G + +W+
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNIIISGSTDRTLKVWNA-ET 188
Query: 116 GKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDML 175
G+ +H H TV C+ KR++S S D TL+ +WD +
Sbjct: 189 GECIHTLYGHTSTVR--CMHLHEKRVVSGSRD-------ATLR------------VWD-I 226
Query: 176 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227
G+ LH H V C+ G+R++S + D K+++ + +HTL
Sbjct: 227 ETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 24/115 (20%)
Query: 133 CLASGGKRLISASLDHHAKIYEMT----LKTVSSFTGGL-----------------DVCI 171
CL G R++S S D+ K++ L+T+ TGG+ + +
Sbjct: 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 183
Query: 172 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
W+ G+ +H H TV C+ KR++S S D +++++ +H L
Sbjct: 184 WNA-ETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 125 HHKTVTSLCLASGGKRLISASLD------------------HHAKIYEMTLKTVS----- 161
H K V + + GK LIS+S D H + + L S
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW 1068
Query: 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221
SF G + V W+++ G ++ FTCH TV S ++S + S S D AKI+ S
Sbjct: 1069 SFDGTVKV--WNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1125
Query: 222 PVHTL 226
P+H L
Sbjct: 1126 PLHEL 1130
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 34/181 (18%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK 117
+IS S D + V++ ++ D V H V+ L + V +W+++ G +
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-R 1083
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVC------- 170
+ FTCH TV S ++S + S S D AKI+ L + G + C
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1143
Query: 171 ----------------IWDMLGGGKLLHK---------FTCHHKTVTSLCLASGGKRLIS 205
IW+ + G+LLH H VT +C + K L+S
Sbjct: 1144 LDGILLATGDDNGEIRIWN-VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1202
Query: 206 A 206
A
Sbjct: 1203 A 1203
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 125 HHKTVTSLCLASGGKRLISASLD------------------HHAKIYEMTLKTVS----- 161
H K V + + GK LIS+S D H + + L S
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW 1061
Query: 162 SFTGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFS 221
SF G + V W+++ G ++ FTCH TV S ++S + S S D AKI+ S
Sbjct: 1062 SFDGTVKV--WNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118
Query: 222 PVHTL 226
P+H L
Sbjct: 1119 PLHEL 1123
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 34/181 (18%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK 117
+IS S D + V++ ++ D V H V+ L + V +W+++ G +
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-R 1076
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVC------- 170
+ FTCH TV S ++S + S S D AKI+ L + G + C
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136
Query: 171 ----------------IWDMLGGGKLLHK---------FTCHHKTVTSLCLASGGKRLIS 205
IW+ + G+LLH H VT +C + K L+S
Sbjct: 1137 LDGILLATGDDNGEIRIWN-VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1195
Query: 206 A 206
A
Sbjct: 1196 A 1196
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSV------NHGSPVESVLCLPSGGIFVTGGGLD- 106
++DI++S S DK++ ++ D V H VE V+ L S G F G D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV-LSSDGQFALSGSWDG 452
Query: 107 -VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTG 165
+ +WD L G +F H K V S+ + ++++SAS D K++
Sbjct: 453 ELRLWD-LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT---------- 501
Query: 166 GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKR--LISASLDHHAKIYEMVN 219
L C + + GG+ H V+ + + + ++SAS D K++ + N
Sbjct: 502 -LGECKYTISEGGE------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 42 QDYVRAGTVSPVS-SDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVESVLCLPSGGIF 99
+D+V SP + ++S S+DKTV V++ + ++ H V +V P G +
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 100 VTGGGLDVC-IWDMLGGGKLLHKFTCHHKTVT-SLCLASGGKRLISASLDHHAKIYEMTL 157
+GG V +WD+ G KL ++ +V +LC S + + A+ +H KI+++
Sbjct: 577 ASGGKDGVVLLWDLAEGKKL---YSLEANSVIHALCF-SPNRYWLCAATEHGIKIWDLES 632
Query: 158 KTV 160
K++
Sbjct: 633 KSI 635
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 102/249 (40%), Gaps = 51/249 (20%)
Query: 1 MSHDLPILI-------VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPV 53
+SH LPI + LWD+ + Q+ + I P+ ++ SP
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKS------IDAGPVDAWTL--------AFSP- 132
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGGGLD--VCIW 110
S + +G++ VN++ S S++ G + S+ P G ++ G +D + I+
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIF 191
Query: 111 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-------TLKTVSSF 163
D + GKLLH H + SL + + L++AS D + KIY++ TL +S+
Sbjct: 192 D-IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250
Query: 164 TGGLDVC----------------IWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISAS 207
+ C +WD+ G +H F H V + G +++S
Sbjct: 251 VLNVAFCPDDTHFVSSSSDKSVKVWDV-GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
Query: 208 LDHHAKIYE 216
D IY+
Sbjct: 310 DDQEIHIYD 318
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVES--VLCLPSGGIFVTG---GGLDVCIWD 111
I S S D + ++D + + S++ G PV++ + P TG G +++
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVNIF--- 149
Query: 112 MLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCI 171
+ GK + K + S+ + GK L S ++D I+++
Sbjct: 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-------------- 195
Query: 172 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD-YPS 230
GKLLH H + SL + + L++AS D + KIY++ + + TL + S
Sbjct: 196 ------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 231 PVLSI 235
VL++
Sbjct: 250 WVLNV 254
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 48/220 (21%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVYD 71
LWD+ + ++S F + S V + +++ +++++ ISGS D TV ++D
Sbjct: 184 LWDVTTGQRISIFGSE---------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 72 TRSPDPVMSVNHG--SPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKT 128
R + HG + SV P G F TG C ++DM G H+ +++
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG----HQLQVYNRE 290
Query: 129 ----------VTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGG 178
VTS+ + G+ L + ++ G D +WD L
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAG------------------YSNG-DCYVWDTLLAE 331
Query: 179 KLLHKFT---CHHKTVTSLCLASGGKRLISASLDHHAKIY 215
+L+ T H ++ L L+S G L + S D + KI+
Sbjct: 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 41/223 (18%)
Query: 51 SPVSSDIVISGSYDKTVNVYDTRSPD----------PVMSVNHGSPVESVLCLPSGGIFV 100
+P ++ V+S S DKT+ + +PD P + S S + L + G F
Sbjct: 24 TPETATKVVSTSRDKTLLSWGP-NPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFA 82
Query: 101 TGGGLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT-- 156
D + +W+ L G+ +KF H K V S+ + ++++S D+ +++ +
Sbjct: 83 VSASWDHSLRLWN-LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 157 -LKTVSS---------------------FTGGLD--VCIWDMLGGGKLLHKFTCHHKTVT 192
+ T+S +GG D V +WD L G+L+ H VT
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD-LATGRLVTDLKGHTNYVT 200
Query: 193 SLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSI 235
S+ ++ G S+ D A+++++ + + +P+ I
Sbjct: 201 SVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQI 243
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVE----SVLCLPSGGI 98
+VR SP S + VI+ D+ ++ +D +S + + + + PV+ ++ L S
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 99 FVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL---CLASGGKRLISASLDHHAKIYEM 155
G + +WD+ K + K+T + + + +A+G R+IS SLD YE+
Sbjct: 268 ATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 156 ----TLKTVSSFTGGL 167
LKT+S G+
Sbjct: 327 GHDEVLKTISGHNKGI 342
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 44 YVRAGTVSPVSSDIVISGSYDKTVNVYDTRSPDPVMSV-NHGSPVE----SVLCLPSGGI 98
+VR SP S + VI+ D+ ++ +D +S + + + + PV+ ++ L S
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 99 FVTGGGLDVCIWDMLGGGKLLHKFTCHHKTVTSL---CLASGGKRLISASLDHHAKIYEM 155
G + +WD+ K + K+T + + + +A+G R+IS SLD YE+
Sbjct: 268 ATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 156 ----TLKTVSSFTGGL 167
LKT+S G+
Sbjct: 327 GHDEVLKTISGHNKGI 342
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 33/180 (18%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGK 117
+IS S D + V++ + + H V+ L + + V +W+++ G K
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNK 1083
Query: 118 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVC------- 170
F CH TV S ++ + S S D AKI+ L G + C
Sbjct: 1084 E-KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS 1142
Query: 171 ----------------IWDMLGGGKLLH--------KFTCHHKTVTSLCLASGGKRLISA 206
IW+ + G+LLH H VT LC + GK LISA
Sbjct: 1143 VDSTLLATGDDNGEIRIWN-VSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 125 HHKTVTSLCLASGGKRLISASLDHHAKIYEMTL----------KTVSSF---------TG 165
H KTV + + K LIS+S D +++ L +TV F +
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSW 1067
Query: 166 GLD--VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPV 223
D V +W+++ G K F CH TV S ++ + S S D AKI+ P+
Sbjct: 1068 SFDGTVKVWNIITGNKE-KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPL 1126
Query: 224 HTL 226
H L
Sbjct: 1127 HEL 1129
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLP-SGGIFVT-GGGLDVCIWDMLG 114
++I+GS D TV V+D + + + ++ H E+VL L + G+ VT + +WDM
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHH--CEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 242
Query: 115 GGKL-LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMT----LKTVSSFTGGL-- 167
+ L + H+ ++ + K ++SAS D K++ + ++T++ G+
Sbjct: 243 PTDITLRRVLVGHRAAVNV-VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301
Query: 168 ---------------DVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+ +WD+ G L H + V C+ KR++S + D
Sbjct: 302 LQYRDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 358
Query: 213 KIYEMV 218
K++++V
Sbjct: 359 KVWDLV 364
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLD--VCIWDML 113
++SGS DKT+ ++D + +M+ V H + V VL SGG F+ D + +WD
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWD-Y 367
Query: 114 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154
+ + H VTSL +++ S+D K++E
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 60/230 (26%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVI-SGSYDKTVN 68
+ +W++ + V TFT H +++VR V P +I S S D+TV
Sbjct: 216 IKMWEVQTGYCVKTFTGH--------------REWVRM--VRPNQDGTLIASCSNDQTVR 259
Query: 69 VYDTRSPDPVMSV-NHGSPVESVLCLPSG-------------------GIFVTGGGLDVC 108
V+ + + + H VE + P G F+ G D
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 109 I--WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGG 166
I WD + G L H V + SGGK ++S + D ++++ K
Sbjct: 320 IKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-------- 370
Query: 167 LDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
+ + H VTSL +++ S+D K++E
Sbjct: 371 ------------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 33/192 (17%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSV--NHGSPVESVLCLPSGGIFV-TGGGLDVCIWDMLG 114
+ISGS D TV +++ P S H V SV P G +F TGG + +++ +
Sbjct: 163 IISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 115 GGKL------LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGL 167
G K K H +V L + G ++ SAS D KI+ + TLK + G
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 168 DV------CIWDMLG----------------GGKLLHKFTCHHKTVTSLCLASGGKRLIS 205
+ IW G + H+K +T+L ++ GK L S
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS 341
Query: 206 ASLDHHAKIYEM 217
A + H +++
Sbjct: 342 ADAEGHINSWDI 353
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPV---ESVLCLPSGGIFVTG-GGLDVCI 109
S D SGS D T +YD R+ V + S + SV SG + G + +
Sbjct: 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310
Query: 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIY 153
WD+L G ++ F H V++L ++ G S S DH +++
Sbjct: 311 WDVLKGSRVSILFG-HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 49/220 (22%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
+ VI+G+ DK + VYD+ + ++ ++ L GGI V+G V +WD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD- 189
Query: 113 LGGGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEM--------------- 155
+ G H F H+ TV L + K +++ S D+ ++++
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 156 ----------------------TLKTVSS-----FTGGLD--VCIWDMLGGGKLLHKFTC 186
+++TVS +G D + +WD+ K L+ +
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSG 308
Query: 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
H + S KR ISAS+D +I+++ N ++TL
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 41/225 (18%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDY-----VRAGTVSPVSS-----DIVISG 61
+W +P E+ V +H + PL+ + TP++ V G ++ V + +IV+SG
Sbjct: 231 VWKLPKESSVP---DHGEEHDYPLVFH-TPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 286
Query: 62 SYDKTVNVYDTRSPDPVMSVN-HGSPVESVLCLPSGGIFVTGG-GLDVCIWDMLGGGKLL 119
SYD T+ V+D + ++ H + S + ++ + IWD L G+L+
Sbjct: 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD-LENGELM 345
Query: 120 HKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGK 179
+ H V L L+ K L+SA+ D S G WD
Sbjct: 346 YTLQGHTALVGLLRLSD--KFLVSAAAD-------------GSIRG------WD---AND 381
Query: 180 LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVH 224
KF+ HH ++++ ++ + ++ IY + + VH
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 78/224 (34%), Gaps = 44/224 (19%)
Query: 55 SDIVISGSYDKTVNVYDTRSPD-------PVMSVNHGSPVESVLCLPSGGIFVTGGGLD- 106
S ++ISGS DKTV ++ + P ++ + S L L F D
Sbjct: 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98
Query: 107 -VCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEM---------- 155
+ +WD L G +F H V S+ + ++++SA + K++ +
Sbjct: 99 TLRLWD-LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 156 ------------------TLKTVSSFTGGLDVCIWD-----MLGGGKLLHKFTCHHKTVT 192
+ V F WD ++ + F H V
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN 217
Query: 193 SLCLASGGKRLISASLDHHAKIYEMVNFS-PVHTLDYPSPVLSI 235
L ++ GK + + D I++++N + P D S + I
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 49/220 (22%)
Query: 54 SSDIVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGGIFVTGG-GLDVCIWDM 112
+ VI+G+ DK + VYD+ + ++ ++ L GGI V+G V +WD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD- 189
Query: 113 LGGGKLLHKFTCHHKTVTSLCLAS--GGKRLISASLDHHAKIYEM--------------- 155
+ G H F H+ TV L + K +++ S D+ ++++
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 156 ----------------------TLKTVSS-----FTGGLD--VCIWDMLGGGKLLHKFTC 186
+++TVS +G D + +WD+ K L+ +
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSG 308
Query: 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTL 226
H + S KR ISAS D +I+++ N +TL
Sbjct: 309 HTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 39/224 (17%)
Query: 12 LWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAG-------TVSPVSS--DIVISGS 62
+W +P E+ V +H + PL+ ++ ++ G +V VS +IV+SGS
Sbjct: 231 VWKLPKESSVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 63 YDKTVNVYDTRSPD--PVMSVNHGSPVESVLCLPSGGIFVTGGGLDVCIWDMLGGGKLLH 120
YD T+ V+D ++S + ++ + IWD L G+L +
Sbjct: 288 YDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD-LENGELXY 346
Query: 121 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKL 180
H V L L+ K L+SA+ D S G WD
Sbjct: 347 TLQGHTALVGLLRLSD--KFLVSAAAD-------------GSIRG------WD---ANDY 382
Query: 181 LHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVH 224
KF+ HH ++++ ++ + ++ IY + + VH
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 52 PVSSDIVISGSYDKTVNVYDTRSPDPVMSVN--------HGSPVESVLCLPSGGIFVTGG 103
P + + S S+DKT+ V+DT + N H SPV + CL + G G
Sbjct: 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVG--TRGP 166
Query: 104 GLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLIS-ASLDHHAKIYEMTLKTVSS 162
+ +C L G H H + + ++ + +++ AS D K+++ V
Sbjct: 167 KVQLCD---LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD-----VRR 218
Query: 163 FTGGLDVCIWDMLGGGK---LLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVN 219
+G L D G K + T H+ V LC S G L++ D+ +++ N
Sbjct: 219 ASGCL--ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 20/104 (19%)
Query: 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK 183
H +T L G+ LIS+S D M LK IW + G
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQD-------MQLK------------IWSVKDGSNP-RT 173
Query: 184 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227
H TVT + + G+ ++SASLD +++E + +HT +
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 20/104 (19%)
Query: 124 CHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHK 183
H +T L G+ LIS+S D M LK IW + G
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQD-------MQLK------------IWSVKDGSNP-RT 176
Query: 184 FTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLD 227
H TVT + + G+ ++SASLD +++E + +HT +
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
ALWDI + Q +TFT HT +M S D + + +SG+ D + ++
Sbjct: 167 ALWDIETGQQTTTFTGHTG----DVMSLSLAPD-----------TRLFVSGACDASAKLW 211
Query: 71 DTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKT 128
D R + H S + ++ P+G F TG C ++D+ +L+ T H
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---TYSHDN 268
Query: 129 ----VTSLCLASGGKRLISASLDHHAKIYE 154
+TS+ + G+ L++ D + +++
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
ALWDI + Q +TFT HT +M S D + + +SG+ D + ++
Sbjct: 167 ALWDIETGQQTTTFTGHTG----DVMSLSLAPD-----------TRLFVSGACDASAKLW 211
Query: 71 DTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKT 128
D R + H S + ++ P+G F TG C ++D+ +L+ T H
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---TYSHDN 268
Query: 129 ----VTSLCLASGGKRLISASLDHHAKIYE 154
+TS+ + G+ L++ D + +++
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
ALWDI + Q +TFT HT +M S D + + +SG+ D + ++
Sbjct: 178 ALWDIETGQQTTTFTGHTG----DVMSLSLAPD-----------TRLFVSGACDASAKLW 222
Query: 71 DTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKT 128
D R + H S + ++ P+G F TG C ++D+ +L+ T H
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---TYSHDN 279
Query: 129 ----VTSLCLASGGKRLISASLDHHAKIYE 154
+TS+ + G+ L++ D + +++
Sbjct: 280 IICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
ALWDI + Q +TFT HT +M S D + + +SG+ D + ++
Sbjct: 167 ALWDIETGQQTTTFTGHTG----DVMSLSLAPD-----------TRLFVSGACDASAKLW 211
Query: 71 DTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKT 128
D R + H S + ++ P+G F TG C ++D+ +L+ T H
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---TYSHDN 268
Query: 129 ----VTSLCLASGGKRLISASLDHHAKIYE 154
+TS+ + G+ L++ D + +++
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 11 ALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNVY 70
ALWDI + Q +TFT HT +M S D + + +SG+ D + ++
Sbjct: 167 ALWDIETGQQTTTFTGHTG----DVMSLSLAPD-----------TRLFVSGACDASAKLW 211
Query: 71 DTRSPDPVMS-VNHGSPVESVLCLPSGGIFVTGGGLDVC-IWDMLGGGKLLHKFTCHHKT 128
D R + H S + ++ P+G F TG C ++D+ +L+ T H
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---TYSHDN 268
Query: 129 ----VTSLCLASGGKRLISASLDHHAKIYE 154
+TS+ + G+ L++ D + +++
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 20/153 (13%)
Query: 9 IVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVIS--GSYDKT 66
+V +WD S T TNH V+A P S+++ + G+ DK
Sbjct: 240 VVQIWDARSSIPKFTKTNHNAA--------------VKAVAWCPWQSNLLATGGGTMDKQ 285
Query: 67 VNVYDTRSPDPVMSVNHGSPVESVLCLP-SGGIFVTGGGLD--VCIWDMLGGGKLLH-KF 122
++ ++ + V +V+ GS V S++ P S I T G D + IW G
Sbjct: 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Query: 123 TCHHKTVTSLCLASGGKRLISASLDHHAKIYEM 155
H V L+ G+ L +A+ D + K + +
Sbjct: 346 PAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 58 VISGSYDKTVNVYDTRSPDPVM 79
V++GS+DKT+ +DTRS +P+M
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMM 165
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 58 VISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG-------IFVTGGGLDVCIW 110
+ISGS DKT+ V+ + + H V V +P+ I G V W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 111 DMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158
+ L ++ F H+ + +L + G + SA D ++ + K
Sbjct: 182 N-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPS-----GGIFVTGGGLD--VCI 109
++ISGS DKT+ V+ + + H V V +P+ + + G D V
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158
W+ L ++ F H+ + +L + G + SA D ++ + K
Sbjct: 181 WN-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG-------IFVTGGGLDVCI 109
++ISGS DKT+ V+ + + H V V +P+ I G V
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158
W+ L ++ F H+ + +L + G + SA D ++ + K
Sbjct: 175 WN-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG-------IFVTGGGLDVCI 109
++ISGS DKT+ V+ + + H V V +P+ I G V
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158
W+ L ++ F H+ + +L + G + SA D ++ + K
Sbjct: 181 WN-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 59/255 (23%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWD+ + ++ T+H+ R G++S +S I+ SGS ++
Sbjct: 182 VQLWDVQQQKRLRNMTSHS----------------ARVGSLS-WNSYILSSGSRSGHIHH 224
Query: 70 YDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGGGLD-VCIWDML---GGGKLLHKFT 123
+D R + ++ H V + P G +GG + V +W GG L FT
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 284
Query: 124 CHHKTVTSLC--------LASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGLDVC--IW 172
H V ++ LA+GG + D H +I+ + + +S+ VC +W
Sbjct: 285 QHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 339
Query: 173 -----DMLGGGKLLH---------------KFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+++ G + H V SL ++ G + SA+ D
Sbjct: 340 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 399
Query: 213 KIYEMVNFSPVHTLD 227
+++ P +
Sbjct: 400 RLWRCFELDPARRRE 414
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG-------IFVTGGGLDVCI 109
++ISGS DKT+ V+ + + H V V +P+ I G V
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158
W+ L ++ F H+ + +L + G + SA D ++ + K
Sbjct: 181 WN-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 57 IVISGSYDKTVNVYDTRSPDPVMSVNHGSPVESVLCLPSGG-------IFVTGGGLDVCI 109
++ISGS DKT+ V+ + + H V V +P+ I G V
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 110 WDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMTLK 158
W+ L ++ F H+ + +L + G + SA D ++ + K
Sbjct: 181 WN-LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 59/255 (23%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWD+ + ++ T+H+ R G++S +S I+ SGS ++
Sbjct: 171 VQLWDVQQQKRLRNMTSHS----------------ARVGSLS-WNSYILSSGSRSGHIHH 213
Query: 70 YDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGGGLD-VCIWDML---GGGKLLHKFT 123
+D R + ++ H V + P G +GG + V +W GG L FT
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273
Query: 124 CHHKTVTSLC--------LASGGKRLISASLDHHAKIYEM-TLKTVSSFTGGLDVC--IW 172
H V ++ LA+GG + D H +I+ + + +S+ VC +W
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328
Query: 173 -----DMLGGGKLLH---------------KFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+++ G + H V SL ++ G + SA+ D
Sbjct: 329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388
Query: 213 KIYEMVNFSPVHTLD 227
+++ P +
Sbjct: 389 RLWRCFELDPARRRE 403
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 132 LCLASGGKRLISASLDHHAKIYEMTLKTVSSFTGGLDVCIWDMLGGGKLLHKFTCHHKTV 191
L G +LI ASLD H ++ + LK V DV I L GG L H K V
Sbjct: 50 LYFKQLGAKLIEASLDDHQRLVD-ALKQV-------DVVI-SALAGGVLSHHILEQLKLV 100
Query: 192 TSLCLASGGKRLISASLDHHAKIYE 216
++ A KR + + I E
Sbjct: 101 EAIKEAGNIKRFLPSEFGMDPDIME 125
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 36/160 (22%)
Query: 10 VALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTVNV 69
V LWD+ + ++ T+H+ R G++S +S I+ SGS ++
Sbjct: 91 VQLWDVQQQKRLRNMTSHS----------------ARVGSLS-WNSYILSSGSRSGHIHH 133
Query: 70 YDTRSPDPVMSV--NHGSPVESVLCLPSGGIFVTGGGLD-VCIWDML---GGGKLLHKFT 123
+D R + ++ H V + P G +GG + V +W GG L FT
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193
Query: 124 CHHKTVTSLC--------LASGGKRLISASLDHHAKIYEM 155
H V ++ LA+GG + D H +I+ +
Sbjct: 194 QHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNV 228
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 114 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 154
G K F+ H K VT + A R+++ S D +A +YE
Sbjct: 43 NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 176 GGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHAKIYE 216
G K F+ H K VT + A R+++ S D +A +YE
Sbjct: 43 NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 8 LIVALWDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYVRAGTVSPVSSDIVISGSYDKTV 67
+ + +WD+ + +S++ H V SP + +S S D +
Sbjct: 149 ICIKVWDLAQQVVLSSYRAHAA--------------QVTCVAASPHKDSVFLSCSEDNRI 194
Query: 68 NVYDTRSPDPVMSVNHGSP 86
++DTR P P + +P
Sbjct: 195 LLWDTRCPKPASQIGCSAP 213
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDV 237
+KT+ +CL G + S +L H+A + + V + + YP P L ID+
Sbjct: 37 RYKTLGGVCLNVGC--IPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM 85
>pdb|3PCR|A Chain A, Structure Of Espg-Arf6 Complex
Length = 357
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239
+F CH + T++C A + A H +I + ++ +LD P+ ++I +S
Sbjct: 235 EFLCHPEAATAICSAFYQSFNVPALTLTHERISKASEYNAERSLDTPNACINISISQ 291
>pdb|3PCS|A Chain A, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
pdb|3PCS|B Chain B, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
pdb|3PCS|C Chain C, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
pdb|3PCS|D Chain D, Structure Of Espg-Pak2 Autoinhibitory Ialpha3 Helix
Complex
Length = 357
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239
+F CH + T++C A + A H +I + ++ +LD P+ ++I +S
Sbjct: 235 EFLCHPEAATAICSAFYQSFNVPALTLTHERISKASEYNAERSLDTPNACINISISQ 291
>pdb|3Q1C|A Chain A, Structure Of Espg Protein
Length = 360
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239
+F CH + T++C A + A H +I + ++ +LD P+ ++I +S
Sbjct: 238 EFLCHPEAATAICSAFYQSFNVPALTLTHERISKASEYNAERSLDTPNACINISISQ 294
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 187 HHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDV 237
+KT+ +CL G + S +L H+A + + V + + YP P L ID+
Sbjct: 37 RYKTLGGVCLNVGC--IPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM 85
>pdb|4FMD|A Chain A, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|C Chain C, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|E Chain E, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|A Chain A, Espg-Rab1-Arf6 Complex
pdb|4FME|D Chain D, Espg-Rab1-Arf6 Complex
Length = 351
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239
+F CH + T++C A + A H +I + ++ +LD P+ ++I +S
Sbjct: 230 EFLCHPEAATAICSAFYQSFNVPALTLTHERISKASEYNAERSLDTPNACINISISQ 286
>pdb|4FMA|A Chain A, Espg Structure
pdb|4FMA|B Chain B, Espg Structure
pdb|4FMA|C Chain C, Espg Structure
pdb|4FMA|D Chain D, Espg Structure
pdb|4FMA|E Chain E, Espg Structure
pdb|4FMA|F Chain F, Espg Structure
pdb|4FMA|G Chain G, Espg Structure
pdb|4FMA|H Chain H, Espg Structure
pdb|4FMA|I Chain I, Espg Structure
pdb|4FMA|J Chain J, Espg Structure
pdb|4FMA|K Chain K, Espg Structure
pdb|4FMA|L Chain L, Espg Structure
Length = 351
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239
+F CH + T++C A + A H +I + ++ +LD P+ ++I +S
Sbjct: 230 EFLCHPEAATAICSAFYQSFNVPALTLTHERISKASEYNAERSLDTPNACINISISQ 286
>pdb|4FMC|A Chain A, Espg-Rab1 Complex
pdb|4FMC|C Chain C, Espg-Rab1 Complex
pdb|4FMC|E Chain E, Espg-Rab1 Complex
Length = 351
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 183 KFTCHHKTVTSLCLASGGKRLISASLDHHAKIYEMVNFSPVHTLDYPSPVLSIDVSM 239
+F CH + T++C A + A H +I + ++ +LD P+ ++I +S
Sbjct: 230 EFLCHPEAATAICSAFYQSFNVPALTLTHERISKASEYNAERSLDTPNACINISISQ 286
>pdb|3QSL|A Chain A, Structure Of Cae31940 From Bordetella Bronchiseptica Rb50
pdb|3QSL|B Chain B, Structure Of Cae31940 From Bordetella Bronchiseptica Rb50
Length = 346
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 155 MTLKTVSSF--TGGLDVCIWDMLGGGKLLHKFTCHHKTVTSLCLASGGKRLISASLDHHA 212
+T+ V F GLDV I D GG K L + G ++S + +H
Sbjct: 50 LTIAEVKGFFKDEGLDVSIADFAGGSKALQ------------AVVGGSADVVSGAFEHTL 97
Query: 213 KIYEMVNFSPVHTLDYPSPVLSIDVS 238
+ F L +P + + VS
Sbjct: 98 SLQAKGQFYRAFALQGRAPXIGVGVS 123
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 173 DMLGGGKLLHKFTCHHKTVTSLCLASGG--KRLISASLDHHAKIYEMVNFSPVHT 225
D +G GK+L KF K + L SGG + ++ D+ AK +V +P T
Sbjct: 105 DYIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKT 159
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 13 WDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYV 45
+D+ S + + + + TT+ KVP+ML S+ Y+
Sbjct: 180 FDLASTREENFYVDETTVVKVPMMLQSSTISYL 212
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 13 WDIPSEAQVSTFTNHTTIYKVPLMLYSTPQDYV 45
+D+ S + + + + TT+ KVP+ML S+ Y+
Sbjct: 179 FDLASTREENFYVDETTVVKVPMMLQSSTISYL 211
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 28/76 (36%)
Query: 56 DIVISGSY---------DKTVNVYDTRS-------PDP----VMSVNHGSPVESVLCLPS 95
D++++G Y +T+++YD S DP ++S+N SP +
Sbjct: 311 DLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP--------T 362
Query: 96 GGIFVTGGGLDVCIWD 111
G + +G G ++ IW+
Sbjct: 363 GDVLASGMGFNILIWN 378
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 28/76 (36%)
Query: 56 DIVISGSY---------DKTVNVYDTRS-------PDP----VMSVNHGSPVESVLCLPS 95
D++++G Y +T+++YD S DP ++S+N SP +
Sbjct: 312 DLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP--------T 363
Query: 96 GGIFVTGGGLDVCIWD 111
G + +G G ++ IW+
Sbjct: 364 GDVLASGMGFNILIWN 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,965,514
Number of Sequences: 62578
Number of extensions: 325637
Number of successful extensions: 1029
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 186
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)