BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11037
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 67/99 (67%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RGE+L+SLC+Q N T+VVLKAR+LPK DV+GL+DPYVKV L + +R++KKKTHVKK
Sbjct: 16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 90 RTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNE 128
T N V+NE FVF++P R ++NE
Sbjct: 76 CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNE 114
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 61/76 (80%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RGE+LLSLC+ P+AN + ++KARNL MD+ G +DPYVKV+L+YK +RV KKKT KK
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 90 RTLNPVYNESFVFEVP 105
R LNP++NESF F++P
Sbjct: 62 RNLNPIFNESFAFDIP 77
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
GE+ SLC+ P A T+ ++KA NL MD+TG +DPYVK L+ +G+R+ K+KT +KK
Sbjct: 139 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 198
Query: 91 TLNPVYNESFVFEV 104
TLNP YNE+ VF+V
Sbjct: 199 TLNPTYNEALVFDV 212
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G I +L + +++ + +L+A +LP D G +DPYVK+YLL R K +T V ++
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL--PDRKKKFQTKVHRK 64
Query: 91 TLNPVYNESFVFEVP 105
TLNP++NE+F F VP
Sbjct: 65 TLNPIFNETFQFSVP 79
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
GE+ SLC+ P A T+ ++KA NL MD+TG +DPYVK L+ +G+R+ K+KT +KK
Sbjct: 140 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 199
Query: 91 TLNPVYNESFVFEV 104
TLNP YNE+ VF+V
Sbjct: 200 TLNPTYNEALVFDV 213
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G I +L + +++ + +L+A +LP D G +DPYVK+YLL R K +T V ++
Sbjct: 8 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL--PDRKKKFQTKVHRK 65
Query: 91 TLNPVYNESFVFEVP 105
TLNP++NE+F F VP
Sbjct: 66 TLNPIFNETFQFSVP 80
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 22 SSEIKSQGR-GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRV 80
S+E + Q + G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+
Sbjct: 127 SAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 186
Query: 81 AKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEA 129
KKKT +KK TLNP YNESF FEVP ++ KN+A
Sbjct: 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDA 235
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
S+ G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T
Sbjct: 2 SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETK 59
Query: 87 VKKRTLNPVYNESFVFEVP 105
V ++TLNPV+NE F F+VP
Sbjct: 60 VHRKTLNPVFNEQFTFKVP 78
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 91 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEA 129
TLNP YNESF FEVP ++ KN+A
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDA 110
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 5 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 91 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEA 129
TLNP YNESF FEVP ++ KN+A
Sbjct: 65 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDA 103
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 65/99 (65%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 4 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 91 TLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVTKNEA 129
TLNP YNESF FEVP ++ KN+A
Sbjct: 64 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDA 102
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 25 IKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK 84
+ ++ RG + L + P A+ + V +ARNL MD GL+DPYVK+ L+ + + K+K
Sbjct: 2 MHTERRGRLQLEIR-APTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQK 60
Query: 85 THVKKRTLNPVYNESFVFEV 104
T K TLNPV+NE+FVF +
Sbjct: 61 TRTVKATLNPVWNETFVFNL 80
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G+I L++ N+ +VV RNL G +DPYV++YLL +R ++KTHV K+
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 91 TLNPVYNESFVFEV 104
TLNPV+++SF F V
Sbjct: 70 TLNPVFDQSFDFSV 83
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 78
Query: 91 TLNPVYNESFVFEVP 105
TLNPV+NE F F+VP
Sbjct: 79 TLNPVFNEQFTFKVP 93
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 78
Query: 91 TLNPVYNESFVFEVP 105
TLNPV+NE F F+VP
Sbjct: 79 TLNPVFNEQFTFKVP 93
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 86
Query: 91 TLNPVYNESFVFEVP 105
TLNPV+NE F F+VP
Sbjct: 87 TLNPVFNEQFTFKVP 101
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RG+IL+SL + + +++ +L MD G +DP+VK++L + AK KT +KK
Sbjct: 23 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82
Query: 90 RTLNPVYNESFVFEV 104
+TLNP +NE F +++
Sbjct: 83 KTLNPEFNEEFFYDI 97
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T V ++
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRK 61
Query: 91 TLNPVYNESFVFEVP 105
TLNPV+NE F F+VP
Sbjct: 62 TLNPVFNEQFTFKVP 76
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RG+IL+SL + + +++ +L MD G +DP+VK++L + AK KT +KK
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 90 RTLNPVYNESFVFEV 104
+TLNP +NE F +++
Sbjct: 61 KTLNPEFNEEFFYDI 75
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RG+IL+SL + + +++ +L D G +DP+VK++L + AK KT +KK
Sbjct: 23 RGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKK 82
Query: 90 RTLNPVYNESFVFEV 104
+TLNP +NE F +++
Sbjct: 83 KTLNPEFNEEFFYDI 97
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G I S+ + + T+ ++KA+ LP D +G +DP+VK+YLL + K +T VK++
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--PDKKHKLETKVKRK 70
Query: 91 TLNPVYNESFVFE 103
LNP +NE+F+FE
Sbjct: 71 NLNPHWNETFLFE 83
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
++ RG I L + + + V A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 1 TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 87 VKKRTLNPVYNESFVFEV 104
+ TLNP +NESF F++
Sbjct: 59 TIRSTLNPQWNESFTFKL 76
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
++ RG I L + + + V A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 2 TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 59
Query: 87 VKKRTLNPVYNESFVFEV 104
+ TLNP +NESF F++
Sbjct: 60 TIRSTLNPQWNESFTFKL 77
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 48 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 104
+VV A+NL MD GL+DPYVK+ L+ + +K+KT K +LNP +NE+F F++
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
++ RG I L + A + + V A+NL D GL+DPYVK+ L+ + +K+KT
Sbjct: 3 TEKRGRIYLKA--EVADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 87 VKKRTLNPVYNESFVFEV 104
+ TLNP +NESF F++
Sbjct: 61 TIRSTLNPQWNESFTFKL 78
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G + SL + + +++A+ L MD GLADPYVK++LL + K +T +
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 91 TLNPVYNESFVFE 103
T NPV+NE+ +
Sbjct: 76 TRNPVWNETLQYH 88
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G + SL + + +++A+ L MD GLADPYVK++LL + K +T +
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 91 TLNPVYNESFVF 102
T NPV+NE+ +
Sbjct: 74 TRNPVWNETLQY 85
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 48 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 104
+VV A+NL MD GL+DPYVK+ L+ + +K+KT K +LNP +NE+F F++
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 44 NRFTIVVLKARNLP-KMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 102
+ + V++AR+L K PYVKVYLL G +AKKKT + ++TL+P+Y +S VF
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 103 E 103
+
Sbjct: 90 D 90
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
G I SL ++ + V + L D ++PYVK YLL R K+KT +K+
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 90 RTLNPVYNESFVFEVP 105
T+NP+Y+E+ +E+P
Sbjct: 70 DTVNPLYDETLRYEIP 85
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 33 ILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRT 91
+ SL + F + + +AR LP MD + +DPY+K+ +L ++ K KT V ++T
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTIL--PEKKHKVKTRVLRKT 68
Query: 92 LNPVYNESFVF 102
L+P ++E+F F
Sbjct: 69 LDPAFDETFTF 79
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T K+
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 91 TLNPVYNESFVF 102
TL P +N++F++
Sbjct: 65 TLEPKWNQTFIY 76
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVA-------- 81
GEI L + + I +L+ARNL D G +DP+VKVYLL +GQ +
Sbjct: 7 GEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 82 KKKTHVKKRTLNPVYNESFVFE 103
K++T +++LNP +N++ +++
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYK 86
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 27 SQGRGEILLSLCWQPAANRFTIV-VLKARNLPKMDVTGLADPYVKV--YLLYKGQRVAKK 83
+ G GE + L +R V V+ +L K D+ G +DPYVK+ Y+ + + +A
Sbjct: 3 ATGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALV 62
Query: 84 KTHVKKRTLNPVYNESFVFEV 104
+T K+TLNP +NE F F V
Sbjct: 63 QTKTIKKTLNPKWNEEFYFRV 83
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 32 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRT 91
++ + L + ++ + +L A++LP + +PYVK+Y L K++T K+T
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 92 LNPVYNESFVF 102
L P +N++F++
Sbjct: 69 LEPKWNQTFIY 79
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 29 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK 88
G G + LS+ ++ I+V+ ++L D +PYVK YLL + +K+KT +
Sbjct: 7 GSGAVKLSVSYRNGT--LFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKIS 63
Query: 89 KRTLNPVYNESFVF 102
++T NP +NE V+
Sbjct: 64 RKTRNPTFNEMLVY 77
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLP--------KMDVTGLADPYVKVYLLYKGQRVAK 82
G + S + N T+ V++AR+LP + D+ ++PYVK+ LL +
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAH-SNPYVKICLLPDQKN--S 69
Query: 83 KKTHVKKRTLNPVYNESFVFEVP 105
K+T VK++T PV+ E + FE+P
Sbjct: 70 KQTGVKRKTQKPVFEERYTFEIP 92
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 103
+ +I V+ A+ L D TG +DPYV V + G+ KK+T LNPV+ E+F FE
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQV---GK--TKKRTKTIYGNLNPVWEENFHFE 71
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 42 AANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 98
++++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNE 58
Query: 99 SFVF 102
+F F
Sbjct: 59 TFEF 62
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 43 ANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 99
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE+
Sbjct: 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNET 74
Query: 100 FVF 102
F F
Sbjct: 75 FEF 77
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIV-VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK 84
K QG G++ LS+ A +R ++ +++ + L G DPYVK+ L+ + R+ +K
Sbjct: 11 KVQGAGQLRLSI---DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQK 66
Query: 85 THVKKRTLNPVYNESFVFEV 104
T +P ++E F F V
Sbjct: 67 TQTVPDCRDPAFHEHFFFPV 86
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 43 ANRFTIVVLKARNLPKM---DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 99
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE+
Sbjct: 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNET 74
Query: 100 FVF 102
F F
Sbjct: 75 FEF 77
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 50 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEV 104
V+ L K D+ G +DPYV+V L V +T K++LNP +NE +F V
Sbjct: 26 VIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 48 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEV 104
+ V+ L K D+ G +DPYV+V L + +T K++LNP +NE +F V
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 100
+ + VL A+NL K D L DP+ K+ + GQ T K TL+P +N+ +
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHY 58
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 100
+ + VL A+NL K D L DP+ KV + GQ T K TL+P +N+ +
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQ---CHSTDTVKNTLDPKWNQHY 56
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 50 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 104
VLKA +L D +G +DP+ LL G + +TH + LNP +N+ F F +
Sbjct: 19 VLKAADLLAADFSGKSDPFC---LLELGND--RLQTHTVYKNLNPEWNKVFTFPI 68
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 48 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEV 104
+V++ A+ L D DPYV++ R +K++V + P +NE+F+F V
Sbjct: 14 VVLVSAKGLEDADFLNNMDPYVQLTC-----RTQDQKSNVAEGMGTTPEWNETFIFTV 66
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 20 DISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR 79
+I I ++GR +IL + AN I +L TGLAD +K L+KG +
Sbjct: 28 NILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDK 87
>pdb|1WQU|A Chain A, Solution Structure Of The Human Fes Sh2 Domain
pdb|2DCR|A Chain A, Fully Automated Solution Structure Determination Of The
Fes Sh2 Domain
Length = 114
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLAD-PYVKVYLLYKGQRVAKKK 84
+SQG+ E +LS+ W F I L NL +++ G P + +LL Q + KK
Sbjct: 42 ESQGKQEYVLSVLWDGLPRHFIIQSLD--NLYRLEGEGFPSIPLLIDHLLSTQQPLTKKS 99
Query: 85 THVKKRTL 92
V R +
Sbjct: 100 GVVLHRAV 107
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLAD-PYVKVYLLYKGQRVAKKK 84
+SQG+ E +LS+ W F I L NL +++ G P + +LL Q + KK
Sbjct: 39 ESQGKQEYVLSVLWDGLPRHFIIQSLD--NLYRLEGEGFPSIPLLIDHLLSTQQPLTKKS 96
Query: 85 THVKKRTL 92
V R +
Sbjct: 97 GVVLHRAV 104
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLAD-PYVKVYLLYKGQRVAKKK 84
+SQG+ E +LS+ W F I L NL +++ G P + +LL Q + KK
Sbjct: 39 ESQGKQEYVLSVLWDGLPRHFIIQSLD--NLYRLEGEGFPSIPLLIDHLLSTQQPLTKKS 96
Query: 85 THVKKRTL 92
V R +
Sbjct: 97 GVVLHRAV 104
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 64 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 104
L DPY+ V + +V +T K++T P YNE F V
Sbjct: 59 LLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANV 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,543,496
Number of Sequences: 62578
Number of extensions: 83433
Number of successful extensions: 206
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 55
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)