Query psy11037
Match_columns 129
No_of_seqs 109 out of 1127
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 16:29:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08677 C2A_Synaptotagmin-13 C 99.9 1.5E-26 3.2E-31 141.4 11.1 95 31-129 1-95 (118)
2 cd08406 C2B_Synaptotagmin-12 C 99.9 1.3E-25 2.7E-30 141.5 11.6 100 30-129 1-100 (136)
3 cd08407 C2B_Synaptotagmin-13 C 99.9 2.1E-25 4.4E-30 140.6 11.7 100 30-129 1-102 (138)
4 cd08393 C2A_SLP-1_2 C2 domain 99.9 6.2E-25 1.3E-29 136.8 11.2 100 30-129 1-101 (125)
5 cd08392 C2A_SLP-3 C2 domain fi 99.9 1.1E-24 2.4E-29 136.0 11.7 100 30-129 1-101 (128)
6 cd08680 C2_Kibra C2 domain fou 99.9 1.5E-24 3.2E-29 134.6 11.1 98 32-129 2-100 (124)
7 cd04029 C2A_SLP-4_5 C2 domain 99.9 5.8E-24 1.2E-28 132.4 11.9 100 30-129 1-101 (125)
8 cd08381 C2B_PI3K_class_II C2 d 99.9 7.1E-24 1.5E-28 131.5 11.6 96 31-129 2-98 (122)
9 cd04028 C2B_RIM1alpha C2 domai 99.9 7.7E-23 1.7E-27 129.9 13.1 101 24-129 11-113 (146)
10 cd08409 C2B_Synaptotagmin-15 C 99.9 5.4E-23 1.2E-27 129.9 12.3 99 30-129 1-99 (137)
11 cd08404 C2B_Synaptotagmin-4 C2 99.9 8E-23 1.7E-27 128.9 12.4 100 30-129 1-100 (136)
12 cd08408 C2B_Synaptotagmin-14_1 99.9 4.8E-23 1E-27 130.2 11.2 99 31-129 2-101 (138)
13 cd08692 C2B_Tac2-N C2 domain s 99.9 1.2E-22 2.5E-27 126.9 11.9 97 32-129 2-99 (135)
14 cd08410 C2B_Synaptotagmin-17 C 99.9 1E-22 2.3E-27 128.3 11.1 99 31-129 1-99 (135)
15 cd08388 C2A_Synaptotagmin-4-11 99.9 2.4E-22 5.1E-27 125.6 11.9 98 30-129 2-101 (128)
16 cd08402 C2B_Synaptotagmin-1 C2 99.9 2.7E-22 5.8E-27 126.5 12.0 100 30-129 1-100 (136)
17 cd08521 C2A_SLP C2 domain firs 99.9 2.5E-22 5.4E-27 124.5 11.5 99 31-129 1-100 (123)
18 cd08387 C2A_Synaptotagmin-8 C2 99.9 3.3E-22 7.2E-27 124.2 11.9 98 30-129 2-99 (124)
19 cd08385 C2A_Synaptotagmin-1-5- 99.9 3.2E-22 7E-27 124.3 11.7 98 30-129 2-99 (124)
20 cd04030 C2C_KIAA1228 C2 domain 99.9 4.4E-22 9.6E-27 124.0 12.2 101 29-129 1-103 (127)
21 cd08405 C2B_Synaptotagmin-7 C2 99.9 2.5E-22 5.4E-27 126.7 11.1 100 30-129 1-100 (136)
22 cd08403 C2B_Synaptotagmin-3-5- 99.9 3.8E-22 8.2E-27 125.5 11.8 99 31-129 1-99 (134)
23 cd08389 C2A_Synaptotagmin-14_1 99.9 3.6E-22 7.8E-27 124.1 10.8 97 30-129 2-99 (124)
24 cd08384 C2B_Rabphilin_Doc2 C2 99.9 5.8E-22 1.3E-26 124.5 10.9 98 32-129 1-98 (133)
25 cd04031 C2A_RIM1alpha C2 domai 99.9 9.2E-22 2E-26 122.3 11.4 100 30-129 2-102 (125)
26 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 9.9E-22 2.2E-26 127.2 11.6 100 30-129 1-113 (162)
27 cd08685 C2_RGS-like C2 domain 99.9 2E-21 4.2E-26 120.0 11.3 92 31-126 1-92 (119)
28 cd04009 C2B_Munc13-like C2 dom 99.9 1.1E-20 2.4E-25 118.8 12.9 101 29-129 1-105 (133)
29 cd08390 C2A_Synaptotagmin-15-1 99.9 6.5E-21 1.4E-25 118.2 11.5 97 31-129 1-98 (123)
30 cd08386 C2A_Synaptotagmin-7 C2 99.9 6E-21 1.3E-25 118.6 11.1 98 30-129 2-100 (125)
31 KOG0696|consensus 99.9 1.2E-21 2.6E-26 140.3 8.5 103 24-129 162-264 (683)
32 cd00276 C2B_Synaptotagmin C2 d 99.9 2E-20 4.3E-25 117.5 12.1 99 31-129 1-99 (134)
33 cd04035 C2A_Rabphilin_Doc2 C2 99.8 6.3E-20 1.4E-24 113.8 11.5 98 30-128 1-99 (123)
34 KOG1028|consensus 99.8 9.2E-20 2E-24 133.1 12.7 114 16-129 268-383 (421)
35 KOG1028|consensus 99.8 6.5E-20 1.4E-24 133.9 10.3 101 27-129 150-250 (421)
36 cd08395 C2C_Munc13 C2 domain t 99.8 5.7E-19 1.2E-23 108.9 10.1 84 45-129 1-87 (120)
37 cd04026 C2_PKC_alpha_gamma C2 99.8 3E-18 6.6E-23 107.3 12.3 97 30-129 1-97 (131)
38 cd04041 C2A_fungal C2 domain f 99.8 1.6E-17 3.4E-22 101.4 10.4 84 44-129 1-86 (111)
39 cd04010 C2B_RasA3 C2 domain se 99.7 1.7E-17 3.7E-22 105.8 8.4 83 45-129 1-96 (148)
40 cd08682 C2_Rab11-FIP_classI C2 99.7 3.5E-17 7.5E-22 101.9 9.5 79 46-129 1-82 (126)
41 KOG1030|consensus 99.7 3.6E-17 7.8E-22 104.2 9.6 79 43-129 5-83 (168)
42 cd04039 C2_PSD C2 domain prese 99.7 1.2E-16 2.7E-21 97.0 11.1 80 44-129 1-84 (108)
43 cd04016 C2_Tollip C2 domain pr 99.7 8.7E-17 1.9E-21 99.3 10.4 77 44-129 2-79 (121)
44 cd08688 C2_KIAA0528-like C2 do 99.7 1.3E-16 2.8E-21 97.2 9.8 79 46-129 1-81 (110)
45 cd08375 C2_Intersectin C2 doma 99.7 3.2E-16 6.9E-21 98.8 10.6 82 41-129 12-93 (136)
46 cd08379 C2D_MCTP_PRT_plant C2 99.7 2.7E-16 5.8E-21 97.8 9.8 72 46-125 2-76 (126)
47 cd08376 C2B_MCTP_PRT C2 domain 99.7 7.8E-16 1.7E-20 94.4 10.3 78 45-129 1-78 (116)
48 cd04036 C2_cPLA2 C2 domain pre 99.7 5.9E-16 1.3E-20 95.4 9.6 79 46-129 2-80 (119)
49 cd04037 C2E_Ferlin C2 domain f 99.7 8.2E-16 1.8E-20 95.5 10.1 80 45-129 1-80 (124)
50 cd04022 C2A_MCTP_PRT_plant C2 99.7 5.6E-16 1.2E-20 96.6 9.2 80 45-129 1-82 (127)
51 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.2E-15 2.6E-20 94.3 10.4 78 45-129 1-78 (121)
52 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.3E-15 2.9E-20 94.3 10.4 78 45-129 1-78 (123)
53 cd04032 C2_Perforin C2 domain 99.7 1.4E-15 2.9E-20 94.7 9.7 81 42-129 26-106 (127)
54 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.3E-15 4.9E-20 94.4 10.5 81 46-129 2-84 (133)
55 cd08686 C2_ABR C2 domain in th 99.7 1.3E-15 2.9E-20 92.9 8.7 67 46-121 1-67 (118)
56 cd08681 C2_fungal_Inn1p-like C 99.7 2.1E-15 4.5E-20 92.8 9.7 77 44-128 1-78 (118)
57 cd04018 C2C_Ferlin C2 domain t 99.6 1.9E-15 4.1E-20 96.6 9.7 78 46-129 2-93 (151)
58 cd08690 C2_Freud-1 C2 domain f 99.6 2.8E-15 6E-20 96.1 10.1 84 46-129 4-96 (155)
59 cd04024 C2A_Synaptotagmin-like 99.6 4.4E-15 9.6E-20 92.4 10.8 79 44-129 1-81 (128)
60 cd04038 C2_ArfGAP C2 domain pr 99.6 4E-15 8.6E-20 94.7 10.4 77 44-129 2-78 (145)
61 cd04043 C2_Munc13_fungal C2 do 99.6 7.2E-15 1.6E-19 91.3 11.1 81 45-129 2-82 (126)
62 cd04019 C2C_MCTP_PRT_plant C2 99.6 5.7E-15 1.2E-19 94.5 10.5 78 45-129 1-79 (150)
63 cd04048 C2A_Copine C2 domain f 99.6 5E-15 1.1E-19 91.4 9.9 80 48-129 4-89 (120)
64 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 5.9E-15 1.3E-19 91.3 10.2 77 46-129 2-78 (121)
65 cd08678 C2_C21orf25-like C2 do 99.6 4.8E-15 1E-19 92.2 9.5 76 46-129 1-76 (126)
66 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 6.1E-15 1.3E-19 91.2 9.6 77 46-129 2-79 (121)
67 cd04050 C2B_Synaptotagmin-like 99.6 1E-14 2.2E-19 88.0 10.2 71 46-123 2-72 (105)
68 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.2E-14 2.7E-19 89.4 10.4 78 44-129 1-78 (119)
69 cd04017 C2D_Ferlin C2 domain f 99.6 1.6E-14 3.5E-19 90.9 11.0 80 45-129 2-88 (135)
70 cd08675 C2B_RasGAP C2 domain s 99.6 8.4E-15 1.8E-19 92.4 8.8 82 46-129 1-95 (137)
71 cd04045 C2C_Tricalbin-like C2 99.6 2.3E-14 5E-19 88.5 10.6 79 44-129 1-79 (120)
72 cd08382 C2_Smurf-like C2 domai 99.6 1.5E-14 3.2E-19 89.7 9.5 74 45-126 1-74 (123)
73 cd04046 C2_Calpain C2 domain p 99.6 2.1E-14 4.6E-19 89.4 9.7 78 43-129 2-79 (126)
74 cd08676 C2A_Munc13-like C2 dom 99.6 2.5E-14 5.5E-19 91.6 9.5 83 38-122 22-128 (153)
75 cd08378 C2B_MCTP_PRT_plant C2 99.6 2.1E-14 4.5E-19 88.8 8.7 71 46-128 2-72 (121)
76 cd04011 C2B_Ferlin C2 domain s 99.6 2.8E-14 6.1E-19 86.9 9.1 79 42-129 2-82 (111)
77 cd08391 C2A_C2C_Synaptotagmin_ 99.6 5.3E-14 1.1E-18 86.7 10.3 77 44-128 1-83 (121)
78 cd08691 C2_NEDL1-like C2 domai 99.6 7.6E-14 1.6E-18 88.0 10.6 76 45-125 2-86 (137)
79 cd04049 C2_putative_Elicitor-r 99.6 7.7E-14 1.7E-18 86.5 10.4 81 44-129 1-83 (124)
80 cd04027 C2B_Munc13 C2 domain s 99.6 7.1E-14 1.5E-18 87.1 10.1 71 45-123 2-72 (127)
81 cd04047 C2B_Copine C2 domain s 99.6 8.5E-14 1.9E-18 84.6 10.1 82 47-129 3-87 (110)
82 cd08400 C2_Ras_p21A1 C2 domain 99.6 9.5E-14 2.1E-18 86.5 10.5 76 44-129 4-79 (126)
83 PF00168 C2: C2 domain; Inter 99.6 3E-14 6.5E-19 82.1 7.6 79 46-128 1-79 (85)
84 cd04040 C2D_Tricalbin-like C2 99.6 7.7E-14 1.7E-18 85.4 9.6 78 46-129 1-78 (115)
85 cd00275 C2_PLC_like C2 domain 99.5 1.4E-13 3E-18 85.6 10.3 82 44-128 2-87 (128)
86 cd04044 C2A_Tricalbin-like C2 99.5 1.6E-13 3.4E-18 84.9 9.7 80 44-129 2-82 (124)
87 cd04014 C2_PKC_epsilon C2 doma 99.5 2.4E-13 5.2E-18 85.2 10.4 78 44-129 4-91 (132)
88 cd04015 C2_plant_PLD C2 domain 99.5 1.7E-13 3.8E-18 88.4 9.9 77 43-126 6-112 (158)
89 cd08394 C2A_Munc13 C2 domain f 99.5 3E-13 6.5E-18 83.7 10.4 73 44-129 2-74 (127)
90 cd04021 C2_E3_ubiquitin_ligase 99.5 4.4E-13 9.5E-18 83.3 10.8 77 44-129 2-78 (125)
91 cd08373 C2A_Ferlin C2 domain f 99.5 2.1E-13 4.7E-18 84.9 9.3 73 50-129 2-74 (127)
92 cd04051 C2_SRC2_like C2 domain 99.5 1.8E-13 3.9E-18 84.9 8.6 80 46-129 2-84 (125)
93 KOG1013|consensus 99.5 1.6E-13 3.4E-18 95.5 6.7 102 27-128 216-317 (362)
94 cd08374 C2F_Ferlin C2 domain s 99.5 3.9E-13 8.5E-18 84.0 7.9 83 45-129 1-110 (133)
95 cd08383 C2A_RasGAP C2 domain ( 99.5 8E-13 1.7E-17 81.0 8.9 74 46-127 2-75 (117)
96 KOG1328|consensus 99.4 1.6E-13 3.4E-18 103.8 6.1 105 25-129 928-1036(1103)
97 KOG0905|consensus 99.4 7.1E-13 1.5E-17 104.2 5.1 99 26-126 1508-1607(1639)
98 PLN02223 phosphoinositide phos 99.3 3E-11 6.4E-16 89.9 10.0 84 44-129 409-497 (537)
99 smart00239 C2 Protein kinase C 99.3 2.5E-10 5.5E-15 67.1 10.9 76 46-125 2-77 (101)
100 PLN03200 cellulose synthase-in 99.2 3E-11 6.5E-16 100.6 8.6 79 43-128 1979-2057(2102)
101 PLN02230 phosphoinositide phos 99.2 2.1E-10 4.6E-15 86.7 10.1 85 43-129 468-558 (598)
102 PLN02952 phosphoinositide phos 99.2 2.5E-10 5.4E-15 86.5 10.4 85 43-129 469-559 (599)
103 PLN03008 Phospholipase D delta 99.2 1.6E-10 3.4E-15 89.6 8.6 57 63-126 75-131 (868)
104 cd04052 C2B_Tricalbin-like C2 99.1 3.8E-10 8.3E-15 68.7 7.9 60 62-128 10-69 (111)
105 PLN02222 phosphoinositide phos 99.1 6.6E-10 1.4E-14 83.9 10.3 85 43-129 451-541 (581)
106 cd00030 C2 C2 domain. The C2 d 99.1 3.4E-09 7.3E-14 61.9 9.8 76 46-127 1-76 (102)
107 KOG0169|consensus 99.1 5.9E-10 1.3E-14 85.1 7.9 83 45-129 617-704 (746)
108 COG5038 Ca2+-dependent lipid-b 99.1 2E-09 4.4E-14 85.3 10.3 80 43-128 1039-1118(1227)
109 PLN02228 Phosphoinositide phos 99.1 2.1E-09 4.5E-14 81.1 10.0 84 44-129 431-521 (567)
110 KOG1011|consensus 99.0 4.2E-10 9E-15 85.1 5.4 73 44-124 295-367 (1283)
111 cd04013 C2_SynGAP_like C2 doma 99.0 5.3E-09 1.2E-13 66.5 8.8 67 44-122 11-77 (146)
112 cd08689 C2_fungal_Pkc1p C2 dom 98.9 2.4E-08 5.2E-13 59.6 8.6 67 46-123 1-70 (109)
113 KOG1264|consensus 98.8 2.7E-08 5.9E-13 76.9 9.3 81 44-127 1065-1147(1267)
114 KOG1013|consensus 98.7 4.2E-10 9.2E-15 78.7 -2.9 100 29-128 78-178 (362)
115 KOG2059|consensus 98.7 2.9E-08 6.3E-13 75.5 6.2 78 44-129 5-82 (800)
116 COG5038 Ca2+-dependent lipid-b 98.6 1.7E-07 3.6E-12 74.8 7.8 78 44-128 436-515 (1227)
117 KOG2059|consensus 98.6 1.3E-07 2.8E-12 72.0 5.8 106 22-129 107-228 (800)
118 KOG1011|consensus 98.5 1.6E-06 3.4E-11 66.3 9.9 98 26-124 1103-1207(1283)
119 KOG2060|consensus 98.4 8.7E-07 1.9E-11 63.4 5.3 93 27-124 254-348 (405)
120 KOG1031|consensus 98.3 1.2E-06 2.6E-11 66.2 5.8 80 44-128 3-84 (1169)
121 KOG1326|consensus 98.3 7.6E-07 1.6E-11 70.2 4.3 80 44-128 613-692 (1105)
122 KOG1327|consensus 98.3 6.3E-06 1.4E-10 61.7 8.7 99 28-129 120-223 (529)
123 PLN02270 phospholipase D alpha 98.2 1.5E-05 3.2E-10 62.6 9.0 77 43-126 7-102 (808)
124 KOG1328|consensus 98.1 4.5E-07 9.7E-12 69.7 -0.9 78 44-123 114-217 (1103)
125 cd08684 C2A_Tac2-N C2 domain f 97.9 1.2E-05 2.6E-10 46.5 2.8 72 47-120 2-74 (103)
126 KOG1326|consensus 97.8 5.4E-06 1.2E-10 65.6 0.2 90 35-129 196-293 (1105)
127 PLN02964 phosphatidylserine de 97.3 0.0013 2.7E-08 51.2 7.3 74 42-128 52-125 (644)
128 KOG1265|consensus 97.1 0.00078 1.7E-08 53.5 4.4 74 44-123 703-781 (1189)
129 cd08398 C2_PI3K_class_I_alpha 96.4 0.056 1.2E-06 35.0 8.6 77 43-123 7-85 (158)
130 PLN02352 phospholipase D epsil 96.4 0.021 4.6E-07 45.3 7.7 69 43-120 9-82 (758)
131 KOG3837|consensus 96.3 0.00054 1.2E-08 50.1 -1.3 92 36-127 359-459 (523)
132 cd08399 C2_PI3K_class_I_gamma 96.1 0.076 1.6E-06 35.0 8.1 78 44-122 10-88 (178)
133 cd08693 C2_PI3K_class_I_beta_d 96.0 0.12 2.5E-06 34.0 8.7 78 44-123 8-87 (173)
134 smart00142 PI3K_C2 Phosphoinos 95.9 0.17 3.7E-06 30.0 10.6 78 46-123 13-92 (100)
135 cd08683 C2_C2cd3 C2 domain fou 95.6 0.036 7.7E-07 34.7 4.6 61 65-126 33-106 (143)
136 cd08380 C2_PI3K_like C2 domain 95.3 0.28 6E-06 31.4 8.2 80 44-124 8-89 (156)
137 PF15627 CEP76-C2: CEP76 C2 do 94.7 0.16 3.4E-06 32.8 5.7 66 40-108 5-72 (156)
138 cd08397 C2_PI3K_class_III C2 d 94.4 0.34 7.4E-06 31.4 6.8 62 63-124 28-91 (159)
139 cd08695 C2_Dock-B C2 domains f 93.9 0.22 4.7E-06 33.2 5.3 41 82-122 54-94 (189)
140 KOG1452|consensus 93.9 0.34 7.4E-06 34.9 6.4 79 41-127 48-128 (442)
141 cd04012 C2A_PI3K_class_II C2 d 93.6 0.81 1.8E-05 29.9 7.6 82 43-124 7-94 (171)
142 cd08694 C2_Dock-A C2 domains f 91.4 0.83 1.8E-05 30.6 5.5 42 81-122 53-94 (196)
143 KOG1327|consensus 91.3 0.38 8.3E-06 36.8 4.2 41 82-124 42-82 (529)
144 PF00792 PI3K_C2: Phosphoinosi 91.0 1.3 2.9E-05 27.8 6.0 58 67-124 4-65 (142)
145 PF14429 DOCK-C2: C2 domain in 89.9 1 2.2E-05 29.7 4.9 43 81-123 59-101 (184)
146 cd08687 C2_PKN-like C2 domain 83.4 7.2 0.00016 23.0 6.1 28 92-123 31-58 (98)
147 cd08696 C2_Dock-C C2 domains f 81.8 6.8 0.00015 26.0 5.5 43 81-123 54-96 (179)
148 cd08697 C2_Dock-D C2 domains f 80.1 7.6 0.00017 25.9 5.3 42 81-122 56-97 (185)
149 PF15625 CC2D2AN-C2: CC2D2A N- 78.1 16 0.00035 23.8 7.0 54 65-123 37-90 (168)
150 cd08679 C2_DOCK180_related C2 76.8 9 0.0002 25.1 5.0 37 87-123 58-94 (178)
151 PF12416 DUF3668: Cep120 prote 76.5 16 0.00036 26.8 6.6 69 46-122 2-75 (340)
152 PF07162 B9-C2: Ciliary basal 59.0 47 0.001 21.5 8.2 37 92-128 55-92 (168)
153 KOG0694|consensus 52.3 18 0.00039 29.0 3.1 52 64-123 27-78 (694)
154 KOG4269|consensus 46.2 10 0.00022 31.5 0.9 58 44-106 759-816 (1112)
155 KOG4028|consensus 45.4 30 0.00065 21.8 2.7 16 113-128 75-90 (175)
156 KOG0904|consensus 29.5 2.6E+02 0.0057 23.8 6.2 75 43-120 342-420 (1076)
157 PF11618 DUF3250: Protein of u 27.6 62 0.0013 19.5 2.1 39 82-121 12-55 (107)
158 PF10358 NT-C2: N-terminal C2 23.2 1.9E+02 0.0041 17.7 7.0 72 45-122 8-86 (143)
159 PF07379 DUF1494: Protein of u 23.0 2.3E+02 0.005 18.6 5.1 49 10-58 68-116 (170)
160 PF02120 Flg_hook: Flagellar h 20.9 1.7E+02 0.0036 16.1 3.4 29 22-52 16-44 (85)
161 PF01060 DUF290: Transthyretin 20.5 1E+02 0.0022 17.2 2.0 16 113-128 13-28 (80)
162 PF15084 DUF4550: Domain of un 20.4 62 0.0013 19.3 1.1 32 93-124 51-86 (99)
No 1
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.94 E-value=1.5e-26 Score=141.36 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=85.9
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 110 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~ 110 (129)
|+|++++.|++..+.|.|.|++|++|+ . .+.+||||++++.++.. ..+.+|+++++++||.|||+|.|+++.+++.
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 689999999999999999999999998 3 35699999999986543 3567899999999999999999999999999
Q ss_pred ccEEEEEEEEcCCCCCCCC
Q psy11037 111 SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~~d~ 129 (129)
...|.|+|||+|+++++|+
T Consensus 77 ~~tL~~~V~d~Drfs~~d~ 95 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHST 95 (118)
T ss_pred CcEEEEEEEeCCCCCCCce
Confidence 9999999999999999874
No 2
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.94 E-value=1.3e-25 Score=141.48 Aligned_cols=100 Identities=46% Similarity=0.693 Sum_probs=92.1
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
.|+|.++++|.+..+.|.|.|++|++|...+..+.+||||++++.+++....+.+|+++++++||.|||+|.|.+...++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 49999999999999999999999999999988889999999999988766667889999999999999999999988888
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||+|..+++|+
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~ 100 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPN 100 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCe
Confidence 88899999999999888764
No 3
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.93 E-value=2.1e-25 Score=140.61 Aligned_cols=100 Identities=39% Similarity=0.549 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCC--CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 107 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~--~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~ 107 (129)
.|+|.+++.|.+..+.|.|.|++|++|...+. .+.+||||++++.++..+..+.+|+++++++||.|||+|.|.++.+
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 49999999999999999999999999999873 3458999999999877777788999999999999999999999988
Q ss_pred CCCccEEEEEEEEcCCCCCCCC
Q psy11037 108 NLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 108 ~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
++....|.|+|||+|..+++|+
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~ 102 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLP 102 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcce
Confidence 8888899999999999988875
No 4
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.93 E-value=6.2e-25 Score=136.76 Aligned_cols=100 Identities=33% Similarity=0.572 Sum_probs=90.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCC-CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~ 108 (129)
+|+|++++.|.+..+.|.|.|++|++|+.++.. +.+||||++++.|......+.+|+++++++||.|||+|.|++...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999999875 7899999999988765456679999999999999999999998777
Q ss_pred CCccEEEEEEEEcCCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+....|.|+|||++..+++++
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~ 101 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSF 101 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcE
Confidence 777789999999999888764
No 5
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.93 E-value=1.1e-24 Score=135.97 Aligned_cols=100 Identities=34% Similarity=0.442 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCC-CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~ 108 (129)
.|+|++++.|++..+.|.|.|++|++|...+.. +.+||||++++.|......+.+|++++++.||.|||+|.|++...+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 489999999999999999999999999999874 8899999999998765556789999999999999999999998877
Q ss_pred CCccEEEEEEEEcCCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+....|.|+|||++.+++++|
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~ 101 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVF 101 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcce
Confidence 777789999999998887764
No 6
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.92 E-value=1.5e-24 Score=134.62 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=89.5
Q ss_pred EEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeE-eeEEeeeeccCCCCCccCcEEEEEecCCCCC
Q psy11037 32 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR-VAKKKTHVKKRTLNPVYNESFVFEVPADNLD 110 (129)
Q Consensus 32 ~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~-~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~ 110 (129)
+|++++.|++..+.|.|.|++|+||...+..+.+||||+++++|+..+ ..+.+|++.++++||.|||+|.|++..+++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 689999999999999999999999999988888999999999987644 3578899999999999999999999999988
Q ss_pred ccEEEEEEEEcCCCCCCCC
Q psy11037 111 SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~~d~ 129 (129)
...|.|+||+++..+++++
T Consensus 82 ~~~L~~~V~~~~~~~~~~~ 100 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEEC 100 (124)
T ss_pred cCEEEEEEEeCCCCCceeE
Confidence 8999999999998887764
No 7
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.92 E-value=5.8e-24 Score=132.37 Aligned_cols=100 Identities=36% Similarity=0.602 Sum_probs=88.7
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCC-CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~ 108 (129)
.|+|++++.|.+..+.|.|.|++|++|...+. .+.+||||++++.|......+++|++++++.||.|||+|.|.+..++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 38999999999999999999999999998765 47899999999988765556778999999999999999999998777
Q ss_pred CCccEEEEEEEEcCCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+....|.|+|||++..+++++
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~ 101 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTF 101 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcE
Confidence 766789999999999888764
No 8
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.92 E-value=7.1e-24 Score=131.46 Aligned_cols=96 Identities=35% Similarity=0.648 Sum_probs=85.3
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEe-cCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNL 109 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i-~~~~~ 109 (129)
|+|++++.|. .+.|.|.|++|++|+..+ .+.+||||++++.+......+.+|++++++.||.|||+|.|++ ...++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 8999999998 789999999999999999 8889999999998876555678999999999999999999997 55556
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++..++++|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~ 98 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEF 98 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcE
Confidence 66689999999999887764
No 9
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.90 E-value=7.7e-23 Score=129.86 Aligned_cols=101 Identities=34% Similarity=0.566 Sum_probs=86.5
Q ss_pred ccccCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCC-CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEE
Q psy11037 24 EIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 102 (129)
Q Consensus 24 ~~~~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f 102 (129)
.+.....|+|++++.| ..+.|.|.|++|++|...+ ..+.+||||++++.+......+++|+++++++||.|||+|.|
T Consensus 11 ~~~~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f 88 (146)
T cd04028 11 VLASPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVF 88 (146)
T ss_pred cccCCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEE
Confidence 3456778999999999 5789999999999998864 567899999999998766567889999999999999999999
Q ss_pred EecCCCCCccEEEEEEE-EcCCCCCCCC
Q psy11037 103 EVPADNLDSVSLELLLL-DWDRVTKNEA 129 (129)
Q Consensus 103 ~i~~~~~~~~~l~i~v~-d~~~~~~~d~ 129 (129)
.+. +....|.|+|| |++..++++|
T Consensus 89 ~v~---l~~~~L~v~V~~d~~~~~~~~~ 113 (146)
T cd04028 89 DVS---PTGKTLQVIVWGDYGRMDKKVF 113 (146)
T ss_pred EEc---CCCCEEEEEEEeCCCCCCCCce
Confidence 998 34568999999 5887777764
No 10
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.90 E-value=5.4e-23 Score=129.85 Aligned_cols=99 Identities=39% Similarity=0.609 Sum_probs=89.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
.|+|++++.|.+..+.|.|.|++|++|...+ .+.+||||++.+.+......+++|++++++.||.|||+|.|.+..+++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4999999999999999999999999999888 777999999999887665567789999999999999999999988877
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+||+++..+++++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~ 99 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKL 99 (137)
T ss_pred CccEEEEEEEeCCCCCCcce
Confidence 77789999999998877764
No 11
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.90 E-value=8e-23 Score=128.93 Aligned_cols=100 Identities=70% Similarity=1.139 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
+|+|.++++|++..+.|.|.+++|++|...+..+.+||||++++.+.+....+.+|.+++++.||.|+|+|.|.+....+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 59999999999999999999999999999998899999999999876655567889999999999999999999987666
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++.+++++|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~ 100 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEV 100 (136)
T ss_pred CCCEEEEEEEECCCCCCCcc
Confidence 65679999999999888775
No 12
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.90 E-value=4.8e-23 Score=130.16 Aligned_cols=99 Identities=29% Similarity=0.538 Sum_probs=89.4
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeC-CeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK-GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~-~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
|+|.+++.|++..+.|.|.|++|++|..++..+.+||||++++.|. +....+.+|++++++.||.|||+|.|++..+++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 7899999999999999999999999999988889999999999874 334457799999999999999999999998888
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+||+++..+++++
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~ 101 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEM 101 (138)
T ss_pred CccEEEEEEEECCCCCCCcE
Confidence 87899999999998887764
No 13
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.90 E-value=1.2e-22 Score=126.89 Aligned_cols=97 Identities=25% Similarity=0.395 Sum_probs=86.7
Q ss_pred EEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCC-CCccCcEEEEEecCCCCC
Q psy11037 32 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL-NPVYNESFVFEVPADNLD 110 (129)
Q Consensus 32 ~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~-~P~~~e~~~f~i~~~~~~ 110 (129)
+|.++++|.+..+.|.|.|++|++|+.+...+.+||||++++.+.+....+++|+++++++ +|.|||+|.|++..++.
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~- 80 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH- 80 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh-
Confidence 6899999999999999999999999988666778999999999888888899999999996 68999999999988654
Q ss_pred ccEEEEEEEEcCCCCCCCC
Q psy11037 111 SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~~d~ 129 (129)
...+.|+|||++..+++||
T Consensus 81 ~v~l~v~v~d~~~~~~n~~ 99 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHF 99 (135)
T ss_pred eeEEEEEEEeCCCCcCCce
Confidence 4789999999999888875
No 14
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.90 E-value=1e-22 Score=128.28 Aligned_cols=99 Identities=35% Similarity=0.622 Sum_probs=87.9
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 110 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~ 110 (129)
|+|.++++|.+..+.|.|.|++|++|...+..+.+||||++.+.+......+.+|++++++.||.|||+|.|.+...++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 89999999999999999999999999999988899999999987654444567899999999999999999999877776
Q ss_pred ccEEEEEEEEcCCCCCCCC
Q psy11037 111 SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~~d~ 129 (129)
...|.|+|||++..+++++
T Consensus 81 ~~~l~~~V~d~d~~~~~~~ 99 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDF 99 (135)
T ss_pred CCEEEEEEEeCCCCCCCcE
Confidence 6679999999998887764
No 15
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.89 E-value=2.4e-22 Score=125.58 Aligned_cols=98 Identities=36% Similarity=0.697 Sum_probs=84.8
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCC-CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEE-EecCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF-EVPAD 107 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f-~i~~~ 107 (129)
+|+|.+++.|.+..+.|.|.|++|++|+..+.. +.+||||++.+.+... .+.+|+++++++||.|||+|.| .+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 699999999999999999999999999998875 8899999999876532 4668999999999999999999 46655
Q ss_pred CCCccEEEEEEEEcCCCCCCCC
Q psy11037 108 NLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 108 ~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
++....|.|+|||+|..+++++
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~ 101 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDV 101 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCce
Confidence 5555679999999999888764
No 16
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.89 E-value=2.7e-22 Score=126.51 Aligned_cols=100 Identities=54% Similarity=0.903 Sum_probs=89.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
+|+|.+++.|.+..+.|.|.|++|++|..++..+.+||||++++.+.+....+.+|.+++++++|.|+|+|.|.+...++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 59999999999999999999999999999988899999999999876555567789999999999999999999887666
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++.+++++|
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~ 100 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDP 100 (136)
T ss_pred CCCEEEEEEEeCCCCCCCce
Confidence 65679999999999888774
No 17
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.89 E-value=2.5e-22 Score=124.49 Aligned_cols=99 Identities=35% Similarity=0.575 Sum_probs=87.3
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCC-CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
|+|+++++|++..+.|.|.|++|++|+..+ ..+.+||||++++.+......+.+|++++++.+|.|+|+|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 899999999999999999999999999988 6788999999998876544456789999999999999999999887766
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++..+++++
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~ 100 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTF 100 (123)
T ss_pred CCCEEEEEEEeCCCCcCCce
Confidence 66689999999998887764
No 18
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.89 E-value=3.3e-22 Score=124.23 Aligned_cols=98 Identities=42% Similarity=0.725 Sum_probs=87.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
+|+|++++.|++..+.|.|.|++|++|...+..+.+||||++++.+... ...+|++++++.+|.|+|+|.|.+...++
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 6999999999999999999999999999998888999999999976533 45789999999999999999999887766
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++.+++++|
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~ 99 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDEC 99 (124)
T ss_pred CCCEEEEEEEECCCCCCCce
Confidence 66689999999999887764
No 19
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.89 E-value=3.2e-22 Score=124.25 Aligned_cols=98 Identities=41% Similarity=0.726 Sum_probs=86.9
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
+|+|.++++|....+.|.|.|++|++|...+..+.+||||++++.+... .+.+|++++++.||.|||+|.|.+...++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 6999999999999999999999999999998888899999999976533 46789999999999999999999887666
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++..+++++
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~ 99 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDL 99 (124)
T ss_pred CCCEEEEEEEeCCCCCCCce
Confidence 55689999999998887764
No 20
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.89 E-value=4.4e-22 Score=124.04 Aligned_cols=101 Identities=32% Similarity=0.595 Sum_probs=88.8
Q ss_pred cceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC
Q psy11037 29 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 108 (129)
Q Consensus 29 ~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~ 108 (129)
+.|+|++++.|++..+.|.|.|++|++|...+..+.+||||++.+.+.+....+.+|++++++.||.|||+|.|.+....
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 46999999999999999999999999999999888999999999987654556789999999999999999999998776
Q ss_pred CCccEEEEEEEEcCCC--CCCCC
Q psy11037 109 LDSVSLELLLLDWDRV--TKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~--~~~d~ 129 (129)
+....|.|.|||++.. ++++|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~ 103 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKL 103 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCce
Confidence 6666899999999875 45553
No 21
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.89 E-value=2.5e-22 Score=126.67 Aligned_cols=100 Identities=56% Similarity=1.002 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
+|+|.++++|.+..+.|.|.|++|++|...+..+.+||||++++.+.+....+.+|++++++.+|.|||+|.|.+..+.+
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 59999999999999999999999999999888889999999998765444456789999999999999999999876655
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++..++++|
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~ 100 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDL 100 (136)
T ss_pred CCCEEEEEEEECCCCCCCcE
Confidence 55579999999999888764
No 22
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.89 E-value=3.8e-22 Score=125.55 Aligned_cols=99 Identities=57% Similarity=0.989 Sum_probs=88.4
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 110 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~ 110 (129)
|+|.+++.|.+..+.|.|.|++|++|..++..+.+||||++++.+.+....+.+|.+++++.+|.|+|+|.|.+..+.+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 89999999999999999999999999999988999999999998766555677899999999999999999998776665
Q ss_pred ccEEEEEEEEcCCCCCCCC
Q psy11037 111 SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~~d~ 129 (129)
...|.|+|||++..++++|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~ 99 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNEL 99 (134)
T ss_pred CCEEEEEEEECCCCCCCce
Confidence 5579999999999988875
No 23
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.89 E-value=3.6e-22 Score=124.13 Aligned_cols=97 Identities=29% Similarity=0.553 Sum_probs=86.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEE-ecCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~-i~~~~ 108 (129)
.|+|++++.|++..+.|.|+|++|++|+..+..+..||||++.+.+... .+.+|++.+. .||.|||+|.|+ +...+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence 6999999999999999999999999999998888899999998877643 5678888877 999999999998 77777
Q ss_pred CCccEEEEEEEEcCCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+....|.|+|||++..+++++
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~ 99 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERL 99 (124)
T ss_pred hccCEEEEEEEECCCcccCce
Confidence 777889999999999887764
No 24
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.88 E-value=5.8e-22 Score=124.50 Aligned_cols=98 Identities=35% Similarity=0.603 Sum_probs=87.4
Q ss_pred EEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCc
Q psy11037 32 EILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS 111 (129)
Q Consensus 32 ~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~ 111 (129)
+|++++.|.+..+.|.|.|++|++|+..+..+.+||||++.+.+...+..+.+|++++++++|.|||+|.|.+..+++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 58899999999999999999999999999888999999999987655556789999999999999999999998776666
Q ss_pred cEEEEEEEEcCCCCCCCC
Q psy11037 112 VSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 112 ~~l~i~v~d~~~~~~~d~ 129 (129)
..|.|+|||++..+++++
T Consensus 81 ~~l~~~V~d~d~~~~~~~ 98 (133)
T cd08384 81 KTLEITVWDKDIGKSNDY 98 (133)
T ss_pred CEEEEEEEeCCCCCCccE
Confidence 689999999998877764
No 25
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=9.2e-22 Score=122.26 Aligned_cols=100 Identities=35% Similarity=0.614 Sum_probs=86.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecC-CC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-DN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~-~~ 108 (129)
.|+|.+++.|++..+.|.|.|++|++|...+..+.+||||++++.+......+.+|++++++.+|.|+|+|.|.+.. .+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 59999999999999999999999999999988888999999999765444457789999999999999999998533 44
Q ss_pred CCccEEEEEEEEcCCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+....|.|+|||++..++++|
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~ 102 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDF 102 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcE
Confidence 444579999999998877764
No 26
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.88 E-value=9.9e-22 Score=127.19 Aligned_cols=100 Identities=35% Similarity=0.655 Sum_probs=86.2
Q ss_pred ceEEEEEEEEeC------------CCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccC
Q psy11037 30 RGEILLSLCWQP------------AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN 97 (129)
Q Consensus 30 ~G~l~~~~~~~~------------~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~ 97 (129)
+|+|.+++.|.+ ..+.|.|.|++|++|+..+..+.+||||++++.+......+++|++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 44799999999999999988889999999999876555567899999999999999
Q ss_pred cEEEEEe-cCCCCCccEEEEEEEEcCCCCCCCC
Q psy11037 98 ESFVFEV-PADNLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 98 e~~~f~i-~~~~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
|+|.|.+ ...++....|.|+|||++..++++|
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~ 113 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDF 113 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCce
Confidence 9999985 3444555579999999999887764
No 27
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.87 E-value=2e-21 Score=119.98 Aligned_cols=92 Identities=24% Similarity=0.398 Sum_probs=80.2
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 110 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~ 110 (129)
|+|+++++| ..+.|.|.|++|++|..++ .+.+||||++++.|......+++|++++++.+|.|||+|.|.+...++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 789999999 6799999999999999988 7789999999999876555677999999999999999999998776654
Q ss_pred ccEEEEEEEEcCCCCC
Q psy11037 111 SVSLELLLLDWDRVTK 126 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~ 126 (129)
. .|.|+||+++..++
T Consensus 78 ~-~l~v~V~~~~~~~~ 92 (119)
T cd08685 78 K-RLLVTVWNKLSKSR 92 (119)
T ss_pred C-EEEEEEECCCCCcC
Confidence 3 58899999987653
No 28
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.87 E-value=1.1e-20 Score=118.79 Aligned_cols=101 Identities=34% Similarity=0.568 Sum_probs=86.2
Q ss_pred cceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCe--EeeEEeeeeccCCCCCccCcEEEEEecC
Q psy11037 29 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQ--RVAKKKTHVKKRTLNPVYNESFVFEVPA 106 (129)
Q Consensus 29 ~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~--~~~~~~T~~~~~~~~P~~~e~~~f~i~~ 106 (129)
.+|+|.++++|+...+.|.|.|++|++|+..+..+.+||||++++.+... ...+.+|+++++++||.|||+|.|.+..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 37999999999999999999999999999998888999999999875432 2357899999999999999999999876
Q ss_pred CC--CCccEEEEEEEEcCCCCCCCC
Q psy11037 107 DN--LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 107 ~~--~~~~~l~i~v~d~~~~~~~d~ 129 (129)
.. .....|.|+|||++..++++|
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~ 105 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDF 105 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcE
Confidence 43 234579999999999887764
No 29
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.86 E-value=6.5e-21 Score=118.15 Aligned_cols=97 Identities=33% Similarity=0.566 Sum_probs=84.6
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCC-CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
|+|.++++|++..+.|.|.|++|++|...+ ..+.+||||++++.+... ...+|+++.++++|.|+|+|.|.+....+
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 899999999999999999999999999988 678899999999876543 35678999999999999999999887666
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
....|.|+|||++..+++++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~ 98 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCI 98 (123)
T ss_pred cccEEEEEEEECCcCCCCcE
Confidence 55679999999998776653
No 30
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.86 E-value=6e-21 Score=118.65 Aligned_cols=98 Identities=40% Similarity=0.697 Sum_probs=83.8
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEe-cCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i-~~~~ 108 (129)
+|+|+++++|.+..+.|.|.+++|++|+..+..+.+||||++++.+.+. .+.+|++++++.+|.|||+|.|.+ ..+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence 6999999999999999999999999999998888899999999865433 457899999999999999999984 3333
Q ss_pred CCccEEEEEEEEcCCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+....|.|+|||++..++++|
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~ 100 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDP 100 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcE
Confidence 444579999999998887764
No 31
>KOG0696|consensus
Probab=99.86 E-value=1.2e-21 Score=140.30 Aligned_cols=103 Identities=36% Similarity=0.612 Sum_probs=93.0
Q ss_pred ccccCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEE
Q psy11037 24 EIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 103 (129)
Q Consensus 24 ~~~~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~ 103 (129)
.-..+.+|+|.+.+.. ....|+|.|.+|++|.+++.+|.+||||++.+.|+.....+++|++++.++||.|||+|.|.
T Consensus 162 ~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~ 239 (683)
T KOG0696|consen 162 TDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK 239 (683)
T ss_pred CcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe
Confidence 3345678999988776 78899999999999999999999999999999998888889999999999999999999999
Q ss_pred ecCCCCCccEEEEEEEEcCCCCCCCC
Q psy11037 104 VPADNLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 104 i~~~~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+.+.+.. +.|.|+|||||+-+++||
T Consensus 240 Lkp~Dkd-rRlsiEvWDWDrTsRNDF 264 (683)
T KOG0696|consen 240 LKPSDKD-RRLSIEVWDWDRTSRNDF 264 (683)
T ss_pred ccccccc-ceeEEEEecccccccccc
Confidence 9888766 358899999999999987
No 32
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.85 E-value=2e-20 Score=117.46 Aligned_cols=99 Identities=60% Similarity=0.918 Sum_probs=87.5
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCC
Q psy11037 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD 110 (129)
Q Consensus 31 G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~ 110 (129)
|+|+++++|.+..+.|.|.|++|++|...+..+.+||||++++.+......+.+|+++.++.+|.|+|+|.|.+....+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 89999999999999999999999999998888889999999998766555678999999999999999999999877655
Q ss_pred ccEEEEEEEEcCCCCCCCC
Q psy11037 111 SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 111 ~~~l~i~v~d~~~~~~~d~ 129 (129)
...|.|+|||.+..+++++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~ 99 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEV 99 (134)
T ss_pred CcEEEEEEEecCCCCCCce
Confidence 5679999999998766653
No 33
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.84 E-value=6.3e-20 Score=113.81 Aligned_cols=98 Identities=33% Similarity=0.616 Sum_probs=83.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEE-ecCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADN 108 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~-i~~~~ 108 (129)
.|+|++++.|++..+.|.|.|++|++|...+..+.+||||++.+.+........+|++++++.+|.|+++|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 49999999999999999999999999998888888999999998765544467899999999999999999996 44334
Q ss_pred CCccEEEEEEEEcCCCCCCC
Q psy11037 109 LDSVSLELLLLDWDRVTKNE 128 (129)
Q Consensus 109 ~~~~~l~i~v~d~~~~~~~d 128 (129)
+....+.|+|||++.. +++
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~ 99 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GND 99 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCe
Confidence 4445799999999876 444
No 34
>KOG1028|consensus
Probab=99.83 E-value=9.2e-20 Score=133.14 Aligned_cols=114 Identities=54% Similarity=0.816 Sum_probs=99.7
Q ss_pred EEeeeccc--ccccCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCC
Q psy11037 16 HNSTDISS--EIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLN 93 (129)
Q Consensus 16 ~~~~~~~~--~~~~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~ 93 (129)
..|.++.. ....+..|+|.++++|++..+.|.|.|++|++|..++..+..||||++++........+++|.+.++++|
T Consensus 268 ~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~n 347 (421)
T KOG1028|consen 268 LFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLN 347 (421)
T ss_pred eeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCC
Confidence 34666622 2222233899999999999999999999999999999999999999999998878888999999999999
Q ss_pred CccCcEEEEEecCCCCCccEEEEEEEEcCCCCCCCC
Q psy11037 94 PVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 94 P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
|.|||+|.|.+..+.+....|.|+|||+|.++++++
T Consensus 348 pv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~ 383 (421)
T KOG1028|consen 348 PVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDL 383 (421)
T ss_pred CcccccEEEeCCHHHhheeEEEEEEEEcccccccce
Confidence 999999999999998888889999999999988763
No 35
>KOG1028|consensus
Probab=99.82 E-value=6.5e-20 Score=133.92 Aligned_cols=101 Identities=42% Similarity=0.678 Sum_probs=93.6
Q ss_pred cCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecC
Q psy11037 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106 (129)
Q Consensus 27 ~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~ 106 (129)
....|+|.+++.|+.....|.|.|++|.+|+.++..+.+||||+++++|+. ..+.+|++.++++||.|||+|.|.+..
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f~v~~ 227 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRFEVPY 227 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEeecCH
Confidence 456799999999999999999999999999999966779999999999875 478899999999999999999999998
Q ss_pred CCCCccEEEEEEEEcCCCCCCCC
Q psy11037 107 DNLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 107 ~~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
.++..+.|.++|||+|+++++|+
T Consensus 228 ~~l~~~~L~l~V~~~drfsr~~~ 250 (421)
T KOG1028|consen 228 EELSNRVLHLSVYDFDRFSRHDF 250 (421)
T ss_pred HHhccCEEEEEEEecCCcccccE
Confidence 88888999999999999999875
No 36
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.81 E-value=5.7e-19 Score=108.88 Aligned_cols=84 Identities=26% Similarity=0.404 Sum_probs=69.2
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEe--CCeEeeEEeeeeccCCCCCccCcEEEEEecCC-CCCccEEEEEEEEc
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLY--KGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDW 121 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~--~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~-~~~~~~l~i~v~d~ 121 (129)
+|.|.|++|++|+..+ .|.+||||++++.. .+.+..+++|+++++++||.|||+|.|.+..+ .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 48899999999863 22334567899999999999999999999765 34556799999999
Q ss_pred CCCCCCCC
Q psy11037 122 DRVTKNEA 129 (129)
Q Consensus 122 ~~~~~~d~ 129 (129)
|..+++++
T Consensus 80 d~~~~dd~ 87 (120)
T cd08395 80 CFARDDRL 87 (120)
T ss_pred cccCCCCE
Confidence 98777764
No 37
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.80 E-value=3e-18 Score=107.32 Aligned_cols=97 Identities=41% Similarity=0.696 Sum_probs=82.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC
Q psy11037 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 109 (129)
Q Consensus 30 ~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~ 109 (129)
+|+|++++.|.. +.|.|.+++|++|...+..+.+||||++.+.+.+......+|+++.++.+|.|+|+|.|.+...+.
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~ 78 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK 78 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence 599999999966 899999999999999888888999999998754444467889999999999999999999876543
Q ss_pred CccEEEEEEEEcCCCCCCCC
Q psy11037 110 DSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 110 ~~~~l~i~v~d~~~~~~~d~ 129 (129)
...|.|+|||++..++++|
T Consensus 79 -~~~l~v~v~d~~~~~~~~~ 97 (131)
T cd04026 79 -DRRLSIEVWDWDRTTRNDF 97 (131)
T ss_pred -CCEEEEEEEECCCCCCcce
Confidence 2469999999998776654
No 38
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=1.6e-17 Score=101.39 Aligned_cols=84 Identities=30% Similarity=0.490 Sum_probs=70.6
Q ss_pred CEEEEEEEEEeCCCCCCCC-CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCC-CccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~-~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~-~~~~l~i~v~d~ 121 (129)
+.|.|.|++|++|...+.. +.+||||++++.+.+ ....+|+++++++||.|||+|.|.+...++ ....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence 5799999999999999887 889999999986543 245789999999999999999998876533 234799999999
Q ss_pred CCCCCCCC
Q psy11037 122 DRVTKNEA 129 (129)
Q Consensus 122 ~~~~~~d~ 129 (129)
|..++|||
T Consensus 79 d~~~~dd~ 86 (111)
T cd04041 79 DRFTADDR 86 (111)
T ss_pred CCCCCCCc
Confidence 99988775
No 39
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=1.7e-17 Score=105.79 Aligned_cols=83 Identities=28% Similarity=0.513 Sum_probs=68.3
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEec-------------CCCCCc
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP-------------ADNLDS 111 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~-------------~~~~~~ 111 (129)
+|.|.|++|++|.. ..+.+||||++++.++.....+++|+++.+++||.|||+|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999988 467899999999976544445678999999999999999999985 223344
Q ss_pred cEEEEEEEEcCCCCCCCC
Q psy11037 112 VSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 112 ~~l~i~v~d~~~~~~~d~ 129 (129)
..|.|.|||++..++++|
T Consensus 79 ~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 79 LELRVDLWHASMGGGDVF 96 (148)
T ss_pred EEEEEEEEcCCCCCCCce
Confidence 579999999998877775
No 40
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.73 E-value=3.5e-17 Score=101.92 Aligned_cols=79 Identities=32% Similarity=0.484 Sum_probs=66.9
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC---CCCccEEEEEEEEcC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD---NLDSVSLELLLLDWD 122 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~---~~~~~~l~i~v~d~~ 122 (129)
+.|+|++|++|...+..+.+||||++.+ +. .+.+|+++.+++||.|||+|.|.+... +.....|.|+|||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE---CC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 4799999999999988889999999998 22 467899999999999999999998762 233457999999999
Q ss_pred CCCCCCC
Q psy11037 123 RVTKNEA 129 (129)
Q Consensus 123 ~~~~~d~ 129 (129)
.+++|+|
T Consensus 76 ~~~~d~~ 82 (126)
T cd08682 76 LLGLDKF 82 (126)
T ss_pred ccCCCce
Confidence 9887774
No 41
>KOG1030|consensus
Probab=99.73 E-value=3.6e-17 Score=104.18 Aligned_cols=79 Identities=33% Similarity=0.508 Sum_probs=70.5
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
-+.|.|.+.+|.+|...|..+.+||||.+.+ +. .+.+|+++.+++||.|||.|.|.+..+.. .|.++|||+|
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~--q~lkT~~v~~n~NPeWNe~ltf~v~d~~~---~lkv~VyD~D 76 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GN--QKLKTRVVYKNLNPEWNEELTFTVKDPNT---PLKVTVYDKD 76 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE---CC--eeeeeeeecCCCCCcccceEEEEecCCCc---eEEEEEEeCC
Confidence 3678999999999999998789999999999 43 57788899999999999999999987764 4999999999
Q ss_pred CCCCCCC
Q psy11037 123 RVTKNEA 129 (129)
Q Consensus 123 ~~~~~d~ 129 (129)
.+++|||
T Consensus 77 ~fs~dD~ 83 (168)
T KOG1030|consen 77 TFSSDDF 83 (168)
T ss_pred CCCcccc
Confidence 9999986
No 42
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=1.2e-16 Score=96.98 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=66.1
Q ss_pred CEEEEEEEEEeCCCCCCCC----CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEE
Q psy11037 44 NRFTIVVLKARNLPKMDVT----GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL 119 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~----~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~ 119 (129)
+.|.|.|++|++|+..+.. +.+||||++.+ +. .+++|+++++++||.|||.|.|.+...... ..|.|+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~-~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKN-FDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CC--EeEeeeeecCCCCCcccceEEEEEeCccCC-CEEEEEEE
Confidence 5789999999999987642 34899999998 32 356899999999999999999998765432 46999999
Q ss_pred EcCCCCCCCC
Q psy11037 120 DWDRVTKNEA 129 (129)
Q Consensus 120 d~~~~~~~d~ 129 (129)
|++..++||+
T Consensus 75 D~d~~~~dd~ 84 (108)
T cd04039 75 DKDKFSFNDY 84 (108)
T ss_pred ECCCCCCCcc
Confidence 9999988875
No 43
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.73 E-value=8.7e-17 Score=99.32 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=64.8
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccC-CCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~-~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
+.|.|+|++|+++...+ .+.+||||++.+ +. .+.+|++..+ +.||.|||+|.|.+.... ..|.|+|||+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d 72 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GH--AVYETPTAYNGAKNPRWNKTIQCTLPEGV---DSIYIEIFDER 72 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CC--EEEEeEEccCCCCCCccCeEEEEEecCCC---cEEEEEEEeCC
Confidence 68999999999988777 788999999999 33 3568888765 799999999999987542 36999999999
Q ss_pred CCCCCCC
Q psy11037 123 RVTKNEA 129 (129)
Q Consensus 123 ~~~~~d~ 129 (129)
.+++||+
T Consensus 73 ~~~~dd~ 79 (121)
T cd04016 73 AFTMDER 79 (121)
T ss_pred CCcCCce
Confidence 9998874
No 44
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=1.3e-16 Score=97.19 Aligned_cols=79 Identities=38% Similarity=0.616 Sum_probs=67.9
Q ss_pred EEEEEEEEeCCCCCCC-CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCcc-CcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 46 FTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~-~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~-~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
|.|.|++|++|+.++. .+.+||||++++. . .+.+|+++++++||.| +|+|.|.+....+....|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---S--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---C--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 5799999999998874 6789999999983 2 5778999999999999 999999998776655579999999999
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.+++++
T Consensus 76 ~~~~~~ 81 (110)
T cd08688 76 YSANDA 81 (110)
T ss_pred CCCCCc
Confidence 888764
No 45
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.70 E-value=3.2e-16 Score=98.81 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEE
Q psy11037 41 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 120 (129)
Q Consensus 41 ~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d 120 (129)
..-+.|.|.+++|++|...+..+.+||||++.+ +. ...+|+++.++.||.|||+|.|.+..... ..|.|+|||
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~--~~l~i~V~D 84 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQ--DVLCITVFD 84 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CC--EeeeccccCCCCCCccCceEEEEecCccC--CEEEEEEEE
Confidence 345789999999999999988899999999998 32 46789999999999999999999865443 369999999
Q ss_pred cCCCCCCCC
Q psy11037 121 WDRVTKNEA 129 (129)
Q Consensus 121 ~~~~~~~d~ 129 (129)
++..++|++
T Consensus 85 ~d~~~~d~~ 93 (136)
T cd08375 85 RDFFSPDDF 93 (136)
T ss_pred CCCCCCCCe
Confidence 998887764
No 46
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=2.7e-16 Score=97.77 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=62.2
Q ss_pred EEEEEEEEeC---CCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 46 FTIVVLKARN---LPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 46 L~v~i~~a~~---l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
|+|.+++|++ |..++..+.+||||.+.+ +. .+.+|+++.++.||.|||+|.|.+.... ..|.|+|||++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d~d 73 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GP--KWVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFDNS 73 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE---CC--EEeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEECC
Confidence 7899999999 788888899999999998 33 3668999999999999999999986543 26999999998
Q ss_pred CCC
Q psy11037 123 RVT 125 (129)
Q Consensus 123 ~~~ 125 (129)
..+
T Consensus 74 ~~~ 76 (126)
T cd08379 74 QSH 76 (126)
T ss_pred Ccc
Confidence 863
No 47
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=7.8e-16 Score=94.40 Aligned_cols=78 Identities=44% Similarity=0.611 Sum_probs=66.2
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
.|.|.+++|++|+..+..+.+|||+++++ +. .+.+|+++.++.||.|+|+|.|.+.... ...|.|+|||++..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~v~v~d~~~~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL---GN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQ--SQILEIEVWDKDTG 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE---CC--EeEecccccCCCCCceeEEEEEEecCCC--CCEEEEEEEECCCC
Confidence 37899999999999988889999999998 22 4578999999999999999999987653 23799999999988
Q ss_pred CCCCC
Q psy11037 125 TKNEA 129 (129)
Q Consensus 125 ~~~d~ 129 (129)
+++++
T Consensus 74 ~~~~~ 78 (116)
T cd08376 74 KKDEF 78 (116)
T ss_pred CCCCe
Confidence 77764
No 48
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=5.9e-16 Score=95.45 Aligned_cols=79 Identities=35% Similarity=0.531 Sum_probs=65.5
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.|++|++|+..+..+.+||||++.+.+.+ ..+.+|+++.++.||.|||+|.|.+..... ..|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~--~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQVK--NVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCcccC--CEEEEEEEECCCC-
Confidence 78999999999998888889999999984322 246789999999999999999999876532 3699999999987
Q ss_pred CCCC
Q psy11037 126 KNEA 129 (129)
Q Consensus 126 ~~d~ 129 (129)
++++
T Consensus 77 ~~~~ 80 (119)
T cd04036 77 MDDH 80 (119)
T ss_pred CCcc
Confidence 5553
No 49
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=8.2e-16 Score=95.51 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=65.9
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
.|+|.|++|++|...+..+.+||||++++. ......+|.++.++++|.|||+|.|.+..+.. ..|.|+|||++..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~--~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLG---KKKINDRDNYIPNTLNPVFGKMFELEATLPGN--SILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEEC---CeeccceeeEEECCCCCccceEEEEEecCCCC--CEEEEEEEECCCC
Confidence 378999999999999988999999999983 22334567778889999999999998765443 3799999999998
Q ss_pred CCCCC
Q psy11037 125 TKNEA 129 (129)
Q Consensus 125 ~~~d~ 129 (129)
+++++
T Consensus 76 ~~dd~ 80 (124)
T cd04037 76 GSDDL 80 (124)
T ss_pred CCCce
Confidence 87764
No 50
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=5.6e-16 Score=96.58 Aligned_cols=80 Identities=30% Similarity=0.481 Sum_probs=66.4
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC-CCCccEEEEEEEEcCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWDR 123 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~-~~~~~~l~i~v~d~~~ 123 (129)
+|.|.|++|++|...+..+.+||||++++. . .+++|+++.++.||.|||.|.|.+... .+....|.|+|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---G--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---C--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 489999999999999888899999999983 2 356899999999999999999998754 3334579999999988
Q ss_pred CC-CCCC
Q psy11037 124 VT-KNEA 129 (129)
Q Consensus 124 ~~-~~d~ 129 (129)
.+ +++|
T Consensus 76 ~~~~d~~ 82 (127)
T cd04022 76 SGRRRSF 82 (127)
T ss_pred CcCCCCe
Confidence 76 5654
No 51
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.67 E-value=1.2e-15 Score=94.33 Aligned_cols=78 Identities=29% Similarity=0.471 Sum_probs=66.2
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
+|.|.|++|++|...+..+.+||||++++. + ....+|+++.++.||.|+|+|.|.+.... ..|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~--~~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~l~~~v~D~d~~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--G--KTVYKSKTIYKNLNPVWDEKFTLPIEDVT---QPLYIKVFDYDRG 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--C--EEEEEeeeccCCCCCccceeEEEEecCCC---CeEEEEEEeCCCC
Confidence 488999999999999888899999999972 2 24678888999999999999999986432 4699999999998
Q ss_pred CCCCC
Q psy11037 125 TKNEA 129 (129)
Q Consensus 125 ~~~d~ 129 (129)
+++++
T Consensus 74 ~~~~~ 78 (121)
T cd04042 74 LTDDF 78 (121)
T ss_pred CCCcc
Confidence 87764
No 52
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.67 E-value=1.3e-15 Score=94.33 Aligned_cols=78 Identities=36% Similarity=0.584 Sum_probs=66.1
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
.|.|.+++|++|...+..+.+||||++++ +. .+.+|+++.++.||.|+|+|.|.+..... ..|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~--~~l~~~v~d~~~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NG--QTLETSVVKKSCYPRWNEVFEFELMEGAD--SPLSVEVWDWDLV 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CC--EEEeceeecCCCCCccCcEEEEEcCCCCC--CEEEEEEEECCCC
Confidence 38899999999999988888999999998 22 35688999999999999999999876542 3699999999988
Q ss_pred CCCCC
Q psy11037 125 TKNEA 129 (129)
Q Consensus 125 ~~~d~ 129 (129)
++++|
T Consensus 74 ~~~~~ 78 (123)
T cd04025 74 SKNDF 78 (123)
T ss_pred CCCcE
Confidence 87764
No 53
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=1.4e-15 Score=94.73 Aligned_cols=81 Identities=28% Similarity=0.336 Sum_probs=65.4
Q ss_pred CCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEc
Q psy11037 42 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 42 ~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
..+.|.|+|++|++|.. +..+.+|||+++++. + .+.+|++++++.||.|||+|.|...... ....|.|+|||+
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~--~---~~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~ 98 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG--G---QEKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDR 98 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC--C---ccccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeC
Confidence 34689999999999974 566789999999982 2 2779999999999999999999743221 224799999999
Q ss_pred CCCCCCCC
Q psy11037 122 DRVTKNEA 129 (129)
Q Consensus 122 ~~~~~~d~ 129 (129)
+..++|||
T Consensus 99 d~~s~dd~ 106 (127)
T cd04032 99 DNGWDDDL 106 (127)
T ss_pred CCCCCCCe
Confidence 99988875
No 54
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=2.3e-15 Score=94.43 Aligned_cols=81 Identities=33% Similarity=0.541 Sum_probs=67.2
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeC--CeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYK--GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~--~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
|.|.|++|++|...+..+.+||||++++... +....+.+|.+++++.||.|||+|.|.+.... ..|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE---HRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC---CEEEEEEEECCC
Confidence 7899999999999988889999999998643 22233568899999999999999999986543 368999999999
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.++++|
T Consensus 79 ~~~~~~ 84 (133)
T cd04033 79 LTRDDF 84 (133)
T ss_pred CCCCCe
Confidence 887764
No 55
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.65 E-value=1.3e-15 Score=92.95 Aligned_cols=67 Identities=28% Similarity=0.366 Sum_probs=56.6
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEc
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
|.|.|.+|++|. +.+||||++++.+.+....+.+|+++++++||.|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEc
Confidence 579999999995 45899999998765443467899999999999999999999863 23799999998
No 56
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.65 E-value=2.1e-15 Score=92.79 Aligned_cols=77 Identities=30% Similarity=0.441 Sum_probs=63.4
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeecc-CCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~-~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
+.|.|.|++|++|+..+..+.+||||++.+. . .+.+|+++. .+.||.|||.|.|.+..+.. ..|.|+|||++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~--~~l~i~v~d~~ 73 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---G--VTKKTKTDFRGGQHPEWDEELRFEITEDKK--PILKVAVFDDD 73 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---C--CccccccccCCCCCCccCceEEEEecCCCC--CEEEEEEEeCC
Confidence 5789999999999999888999999999983 2 356777764 57899999999999987533 37999999998
Q ss_pred CCCCCC
Q psy11037 123 RVTKNE 128 (129)
Q Consensus 123 ~~~~~d 128 (129)
..+ ++
T Consensus 74 ~~~-~~ 78 (118)
T cd08681 74 KRK-PD 78 (118)
T ss_pred CCC-Cc
Confidence 765 54
No 57
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.9e-15 Score=96.63 Aligned_cols=78 Identities=40% Similarity=0.654 Sum_probs=64.4
Q ss_pred EEEEEEEEeCCCCCCCCC--------------CCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCc
Q psy11037 46 FTIVVLKARNLPKMDVTG--------------LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDS 111 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~--------------~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~ 111 (129)
|.|+|++|++|+.++..+ .+||||++.+. + .+.+|++++++.||.|||+|.|++..+...
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~--g---~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~- 75 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA--G---QKVKTSVKKNSYNPEWNEQIVFPEMFPPLC- 75 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC--C---EeeecceEcCCCCCCcceEEEEEeeCCCcC-
Confidence 789999999999987543 68999999983 2 245899999999999999999997654433
Q ss_pred cEEEEEEEEcCCCCCCCC
Q psy11037 112 VSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 112 ~~l~i~v~d~~~~~~~d~ 129 (129)
..|.|+|||+|..++||+
T Consensus 76 ~~l~~~v~D~d~~~~dd~ 93 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDV 93 (151)
T ss_pred CEEEEEEEECCCCCCCCE
Confidence 369999999999888774
No 58
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=2.8e-15 Score=96.06 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=66.1
Q ss_pred EEEEEEEEeC--CCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC------CCCccEEEEE
Q psy11037 46 FTIVVLKARN--LPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD------NLDSVSLELL 117 (129)
Q Consensus 46 L~v~i~~a~~--l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~------~~~~~~l~i~ 117 (129)
..++|..|++ ++.....+..||||++++..+.....+.+|+++++++||.|||+|.|.+... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 6677777889999999986444456788999999999999999999999665 2445679999
Q ss_pred EEEcCCC-CCCCC
Q psy11037 118 LLDWDRV-TKNEA 129 (129)
Q Consensus 118 v~d~~~~-~~~d~ 129 (129)
|||.+.+ .+|++
T Consensus 84 V~d~~~f~~~D~~ 96 (155)
T cd08690 84 VYHKGGFLRSDKL 96 (155)
T ss_pred EEeCCCcccCCCe
Confidence 9999986 35653
No 59
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.64 E-value=4.4e-15 Score=92.43 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=66.4
Q ss_pred CEEEEEEEEEeCCCCCCC--CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~--~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
+.|.|.+++|++|...+. .+.+||||++++ +. .+.+|+++.++.+|.|+|+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~--~~~l~i~v~d~ 73 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQ--NQLLKLILWDK 73 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CC--EEEecceecCCcCCccCCcEEEEecCCC--CCEEEEEEEEC
Confidence 468999999999999887 788999999987 22 3578999999999999999999987632 24799999999
Q ss_pred CCCCCCCC
Q psy11037 122 DRVTKNEA 129 (129)
Q Consensus 122 ~~~~~~d~ 129 (129)
+..++++|
T Consensus 74 ~~~~~~~~ 81 (128)
T cd04024 74 DRFAGKDY 81 (128)
T ss_pred CCCCCCCc
Confidence 98877764
No 60
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.64 E-value=4e-15 Score=94.66 Aligned_cols=77 Identities=36% Similarity=0.588 Sum_probs=66.3
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
+.|.|.|++|++|...+. +.+||||++.+ +. ...+|+++.++.||.|+|+|.|.+..+ ...|.|+|||++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GN--QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CC--EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCC
Confidence 578999999999998886 78999999998 32 467899999999999999999998765 2469999999999
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
+++|++
T Consensus 73 ~~~dd~ 78 (145)
T cd04038 73 FSKDDS 78 (145)
T ss_pred CCCCCE
Confidence 888764
No 61
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.64 E-value=7.2e-15 Score=91.35 Aligned_cols=81 Identities=33% Similarity=0.448 Sum_probs=66.9
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
.|.|.|++|++|...+..+.+||||++.+... .....+|++++++++|.|||+|.|.+..... ..|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~--~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRRIAKTRTIYDTLNPRWDEEFELEVPAGEP--LWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--CeeeecccEecCCCCCcccceEEEEcCCCCC--CEEEEEEEECCCC
Confidence 58899999999999988889999999986322 1345789999999999999999999877532 3789999999988
Q ss_pred CCCCC
Q psy11037 125 TKNEA 129 (129)
Q Consensus 125 ~~~d~ 129 (129)
+++++
T Consensus 78 ~~~~~ 82 (126)
T cd04043 78 GKHDL 82 (126)
T ss_pred CCCce
Confidence 76653
No 62
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.63 E-value=5.7e-15 Score=94.52 Aligned_cols=78 Identities=23% Similarity=0.263 Sum_probs=64.6
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccC-CCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~-~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
.|.|.|++|++|...+..+.+||||++.+. . .+.+|++..+ +.||.|||.|.|.+..+.. ..|.|+|||++.
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~--~~l~v~V~d~~~ 73 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---N--QVLRTRPSQTRNGNPSWNEELMFVAAEPFE--DHLILSVEDRVG 73 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---C--EEeeeEeccCCCCCCcccCcEEEEecCccC--CeEEEEEEEecC
Confidence 378999999999999999999999999983 2 4667887765 6999999999999865433 368899999998
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.+++++
T Consensus 74 ~~~dd~ 79 (150)
T cd04019 74 PNKDEP 79 (150)
T ss_pred CCCCCe
Confidence 777664
No 63
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.63 E-value=5e-15 Score=91.45 Aligned_cols=80 Identities=29% Similarity=0.446 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCCCCCCCCCcEEEEEEEeCC--eEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC--
Q psy11037 48 IVVLKARNLPKMDVTGLADPYVKVYLLYKG--QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR-- 123 (129)
Q Consensus 48 v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~--~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~-- 123 (129)
...++|++|...+..+.+|||+++++.+.. ......+|+++++++||.|+|+|.|.+..+... .|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~--~l~~~V~d~d~~~ 81 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQ--KLRFEVYDVDSKS 81 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeee--EEEEEEEEecCCc
Confidence 456889999999988999999999987653 344578999999999999999999986554443 69999999997
Q ss_pred --CCCCCC
Q psy11037 124 --VTKNEA 129 (129)
Q Consensus 124 --~~~~d~ 129 (129)
.++++|
T Consensus 82 ~~~~~~d~ 89 (120)
T cd04048 82 KDLSDHDF 89 (120)
T ss_pred CCCCCCcE
Confidence 677764
No 64
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.63 E-value=5.9e-15 Score=91.28 Aligned_cols=77 Identities=27% Similarity=0.528 Sum_probs=65.2
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.+++|++|...+..+.+||||++++. +. ...+|+++.++.||.|||.|.|.+.... ..|.|+|||++..+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~~---~~l~v~v~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NE--VIIRTATVWKTLNPFWGEEYTVHLPPGF---HTVSFYVLDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CE--eeeeeeeEcCCCCCcccceEEEeeCCCC---CEEEEEEEECCCCC
Confidence 78999999999999988999999999882 22 3468999999999999999999986532 36999999999988
Q ss_pred CCCC
Q psy11037 126 KNEA 129 (129)
Q Consensus 126 ~~d~ 129 (129)
++++
T Consensus 75 ~d~~ 78 (121)
T cd04054 75 RDDV 78 (121)
T ss_pred CCCE
Confidence 8764
No 65
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.63 E-value=4.8e-15 Score=92.25 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=63.0
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.+++|++|+. ..+.+||||++++.. ...+.+|+++.++.||.|+|.|.|.+... ...|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKS 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCC
Confidence 5799999999987 578899999999831 12457899999999999999999998643 236999999999988
Q ss_pred CCCC
Q psy11037 126 KNEA 129 (129)
Q Consensus 126 ~~d~ 129 (129)
+++|
T Consensus 73 ~~~~ 76 (126)
T cd08678 73 DSKF 76 (126)
T ss_pred CCce
Confidence 7765
No 66
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.62 E-value=6.1e-15 Score=91.24 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=63.3
Q ss_pred EEEEEEEEeCCCCCC-CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 46 FTIVVLKARNLPKMD-VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 46 L~v~i~~a~~l~~~~-~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
|.|.+++|++|+..+ ..+.+||||++.+. +. ...+|++++++++|.|||+|.|.+.... ..|.|.|||++..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~~---~~l~~~v~d~~~~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QE--EVFRTKTVEKSLCPFFGEDFYFEIPRTF---RHLSFYIYDRDVL 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--Cc--cEEEeeEEECCCCCccCCeEEEEcCCCC---CEEEEEEEECCCC
Confidence 678999999999874 45678999999882 21 3568899999999999999999997542 3799999999998
Q ss_pred CCCCC
Q psy11037 125 TKNEA 129 (129)
Q Consensus 125 ~~~d~ 129 (129)
+++++
T Consensus 75 ~~~~~ 79 (121)
T cd08401 75 RRDSV 79 (121)
T ss_pred CCCce
Confidence 87764
No 67
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.62 E-value=1e-14 Score=88.05 Aligned_cols=71 Identities=34% Similarity=0.509 Sum_probs=61.9
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
|.|.|++|++|+..+..+.+||||++.+ +. ...+|+++.++.+|.|||.|.|.+..+... .|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~---~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~--~l~v~v~d~~~ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTV---GK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQ--ELEIEVKDDKT 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEE---CC--EEEeCccccCCCCCcccceEEEEeCCCCCC--EEEEEEEECCC
Confidence 7899999999999888889999999998 32 467899999999999999999999875544 68999999875
No 68
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.62 E-value=1.2e-14 Score=89.39 Aligned_cols=78 Identities=31% Similarity=0.471 Sum_probs=65.4
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
+.|.|.|++|++|...+..+.+||||++++. . ...+|+++.++.||.|+|+|.|.+... ...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~--~~~~T~~~~~t~nP~W~e~f~~~~~~~---~~~l~~~v~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---N--ARLQTHTIYKTLNPEWNKIFTFPIKDI---HDVLEVTVYDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---C--EeeecceecCCcCCccCcEEEEEecCc---CCEEEEEEEECCC
Confidence 4689999999999999888889999999983 2 246899999999999999999998642 2469999999998
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.+++++
T Consensus 73 ~~~~~~ 78 (119)
T cd08377 73 DKKPEF 78 (119)
T ss_pred CCCCce
Confidence 777764
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=1.6e-14 Score=90.95 Aligned_cols=80 Identities=29% Similarity=0.523 Sum_probs=65.4
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC-----CC--CccEEEEE
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-----NL--DSVSLELL 117 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~-----~~--~~~~l~i~ 117 (129)
.|.|.|++|++|..++..+.+||||++.+. . .+.+|++++++.||.|||+|.|.+... .. ....|.|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---N--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---C--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 689999999999999999999999999983 2 367899999999999999999974321 11 11358899
Q ss_pred EEEcCCCCCCCC
Q psy11037 118 LLDWDRVTKNEA 129 (129)
Q Consensus 118 v~d~~~~~~~d~ 129 (129)
|||+|..++|+|
T Consensus 77 V~d~d~~~~d~~ 88 (135)
T cd04017 77 LFDQDSVGKDEF 88 (135)
T ss_pred EEeCcCCCCCcc
Confidence 999999888775
No 70
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=8.4e-15 Score=92.44 Aligned_cols=82 Identities=32% Similarity=0.558 Sum_probs=67.5
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC-------------CCCcc
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-------------NLDSV 112 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~-------------~~~~~ 112 (129)
|.|.|++|++|..+ ..+.+||||++++..+ ....+++|+++.++.+|.|+|+|.|.+... ++...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 7788999999998643 223567899999999999999999998765 23445
Q ss_pred EEEEEEEEcCCCCCCCC
Q psy11037 113 SLELLLLDWDRVTKNEA 129 (129)
Q Consensus 113 ~l~i~v~d~~~~~~~d~ 129 (129)
.|.|+|||++..++++|
T Consensus 79 ~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 79 ELRVELWHASMVSGDDF 95 (137)
T ss_pred EEEEEEEcCCcCcCCcE
Confidence 79999999998877764
No 71
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=2.3e-14 Score=88.52 Aligned_cols=79 Identities=30% Similarity=0.532 Sum_probs=66.7
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
+.|.|.+++|++|...+..+.+|||+++.+. +. ...+|.++.++.+|.|+|+|.|.+.... ..|.|+|||++.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~~---~~L~v~v~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GI--VKGRTVTISNTLNPVWDEVLYVPVTSPN---QKITLEVMDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CE--EeeceeEECCCcCCccCceEEEEecCCC---CEEEEEEEECCC
Confidence 4689999999999999888899999999982 22 4578888899999999999999886643 369999999999
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.+++++
T Consensus 74 ~~~d~~ 79 (120)
T cd04045 74 VGKDRS 79 (120)
T ss_pred CCCCCe
Confidence 887764
No 72
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=1.5e-14 Score=89.74 Aligned_cols=74 Identities=31% Similarity=0.479 Sum_probs=63.8
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
+|.|.|++|++|...+..+.+|||+++++. + ....+|.++++++||.|+|+|.|.+.. ...|.|+|||++..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD--G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKF 72 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC--C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCC
Confidence 478999999999999888899999999983 2 246789999999999999999999865 23799999999987
Q ss_pred CC
Q psy11037 125 TK 126 (129)
Q Consensus 125 ~~ 126 (129)
++
T Consensus 73 ~~ 74 (123)
T cd08382 73 KK 74 (123)
T ss_pred CC
Confidence 65
No 73
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.59 E-value=2.1e-14 Score=89.39 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=65.0
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
...|.|.|++|++|...+..+.+|||+++.+. + ...+|+++.++.+|.|+|.|.|.+... ...|.|+|||++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~ 73 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE--G---ESVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSN 73 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC--C---EEEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECC
Confidence 35789999999999998888899999999872 2 357899999999999999999987643 346999999998
Q ss_pred CCCCCCC
Q psy11037 123 RVTKNEA 129 (129)
Q Consensus 123 ~~~~~d~ 129 (129)
..+ |+|
T Consensus 74 ~~~-d~~ 79 (126)
T cd04046 74 LLC-DEF 79 (126)
T ss_pred CCC-CCc
Confidence 764 553
No 74
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=2.5e-14 Score=91.62 Aligned_cols=83 Identities=35% Similarity=0.508 Sum_probs=67.1
Q ss_pred EEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeE------------------------eeEEeeeeccCCCC
Q psy11037 38 CWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR------------------------VAKKKTHVKKRTLN 93 (129)
Q Consensus 38 ~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~------------------------~~~~~T~~~~~~~~ 93 (129)
+..+....|.|.|++|++|..++..+.+||||++.+.+.... ....+|.++.++++
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 345667889999999999999998999999999998643211 12368899999999
Q ss_pred CccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 94 PVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 94 P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
|.|+|+|.|.+.... ...|.|+|||++
T Consensus 102 P~WnE~F~f~v~~~~--~~~L~i~V~D~d 128 (153)
T cd08676 102 PVWNETFRFEVEDVS--NDQLHLDIWDHD 128 (153)
T ss_pred CccccEEEEEeccCC--CCEEEEEEEecC
Confidence 999999999986542 347999999986
No 75
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.58 E-value=2.1e-14 Score=88.85 Aligned_cols=71 Identities=35% Similarity=0.474 Sum_probs=59.0
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.|++|++|... .+||||++.+. . .+.+|++++++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~--~~~L~~~v~d~d~~- 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG---N--YKGSTKAIERTSNPEWNQVFAFSKDRLQ--GSTLEVSVWDKDKA- 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC---C--ccccccccCCCCCCccceEEEEEcCCCc--CCEEEEEEEeCCCC-
Confidence 78999999999887 68999999983 2 4678999999999999999999976532 24799999999876
Q ss_pred CCC
Q psy11037 126 KNE 128 (129)
Q Consensus 126 ~~d 128 (129)
+++
T Consensus 70 ~~~ 72 (121)
T cd08378 70 KDD 72 (121)
T ss_pred cCc
Confidence 444
No 76
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.57 E-value=2.8e-14 Score=86.94 Aligned_cols=79 Identities=32% Similarity=0.368 Sum_probs=64.0
Q ss_pred CCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC--CCccEEEEEEE
Q psy11037 42 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN--LDSVSLELLLL 119 (129)
Q Consensus 42 ~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~--~~~~~l~i~v~ 119 (129)
+...|.|.+++|++|. .+.+||||++.+. . .+++|+++.++.+|.|+|+|.|.+..+. +....|.|+||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG---G--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEEC---C--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 4567999999999998 4679999999984 2 3567899999999999999999975432 33457999999
Q ss_pred EcCCCCCCCC
Q psy11037 120 DWDRVTKNEA 129 (129)
Q Consensus 120 d~~~~~~~d~ 129 (129)
|++..+++++
T Consensus 73 d~~~~~~~~~ 82 (111)
T cd04011 73 DSRSLRSDTL 82 (111)
T ss_pred cCcccccCCc
Confidence 9998877654
No 77
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.57 E-value=5.3e-14 Score=86.71 Aligned_cols=77 Identities=34% Similarity=0.398 Sum_probs=63.2
Q ss_pred CEEEEEEEEEeCCCCCCC------CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEE
Q psy11037 44 NRFTIVVLKARNLPKMDV------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL 117 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~------~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~ 117 (129)
+.|.|.|++|++|...+. .+.+||||++++. . ...+|+++.++.+|.|+|+|.|.+..... ..|.|+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~--~~l~i~ 73 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---A--QTFKSKVIKENLNPKWNEVYEAVVDEVPG--QELEIE 73 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---C--EeEEccccCCCCCCcccceEEEEeCCCCC--CEEEEE
Confidence 468999999999998764 3579999999983 2 46789999999999999999999875432 479999
Q ss_pred EEEcCCCCCCC
Q psy11037 118 LLDWDRVTKNE 128 (129)
Q Consensus 118 v~d~~~~~~~d 128 (129)
|||++.. +++
T Consensus 74 v~d~~~~-~~~ 83 (121)
T cd08391 74 LFDEDPD-KDD 83 (121)
T ss_pred EEecCCC-CCC
Confidence 9999877 554
No 78
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.56 E-value=7.6e-14 Score=87.98 Aligned_cols=76 Identities=30% Similarity=0.389 Sum_probs=62.0
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeE--------eeEEeeeeccCCCCCcc-CcEEEEEecCCCCCccEEE
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR--------VAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLE 115 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~--------~~~~~T~~~~~~~~P~~-~e~~~f~i~~~~~~~~~l~ 115 (129)
.+.|.+++|++|. .+..+.+|||+++.+.+.... ..+++|.++.+++||.| ||+|.|.+...+ .|.
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~----~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTD----VLE 76 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCC----EEE
Confidence 3678999999998 667889999999998754432 24789999999999999 999999986433 699
Q ss_pred EEEEEcCCCC
Q psy11037 116 LLLLDWDRVT 125 (129)
Q Consensus 116 i~v~d~~~~~ 125 (129)
|+|||++..+
T Consensus 77 v~V~D~~~~~ 86 (137)
T cd08691 77 IEVKDKFAKS 86 (137)
T ss_pred EEEEecCCCC
Confidence 9999986543
No 79
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.56 E-value=7.7e-14 Score=86.53 Aligned_cols=81 Identities=27% Similarity=0.462 Sum_probs=65.2
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeecc-CCCCCccCcEEEEEecCCCC-CccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNL-DSVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~-~~~~P~~~e~~~f~i~~~~~-~~~~l~i~v~d~ 121 (129)
+.|.|.|++|++|...+..+.+||||++.+. . ..++|.+.. ++.+|.||++|.|.+..... ....|.|+|||.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 75 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---T--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK 75 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---C--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence 4689999999999998888889999999982 2 245677766 48999999999999987632 124689999999
Q ss_pred CCCCCCCC
Q psy11037 122 DRVTKNEA 129 (129)
Q Consensus 122 ~~~~~~d~ 129 (129)
+..+++++
T Consensus 76 ~~~~~d~~ 83 (124)
T cd04049 76 DNFSDDDF 83 (124)
T ss_pred ccCCCCCe
Confidence 98877654
No 80
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.56 E-value=7.1e-14 Score=87.12 Aligned_cols=71 Identities=38% Similarity=0.597 Sum_probs=60.4
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
.|.|.|++|++|...+..+.+|||+++++ +. ...+|+++.++++|.|+|+|.|.+.... ..|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~---~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~~---~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQV---GK--TKKRTKTIPQNLNPVWNEKFHFECHNSS---DRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEE---CC--EeeecceecCCCCCccceEEEEEecCCC---CEEEEEEEECCC
Confidence 68999999999999988889999999998 22 3568888999999999999999875432 368999999985
No 81
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.56 E-value=8.5e-14 Score=84.59 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=63.9
Q ss_pred EEEEEEEeCCCCCCCCCCCCcEEEEEEEeCC-eEeeEEeeeeccCCCCCccCcEEEEEecCCC--CCccEEEEEEEEcCC
Q psy11037 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADN--LDSVSLELLLLDWDR 123 (129)
Q Consensus 47 ~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~-~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~--~~~~~l~i~v~d~~~ 123 (129)
.+..++|++|...+..+.+|||+++++.+.. .....++|++++++++|.|+ .|.|++..-. .....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 4567789999999988999999999986542 34457899999999999999 6777643211 113479999999999
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.++|++
T Consensus 82 ~~~d~~ 87 (110)
T cd04047 82 SGKHDL 87 (110)
T ss_pred CCCCcE
Confidence 988874
No 82
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.56 E-value=9.5e-14 Score=86.46 Aligned_cols=76 Identities=26% Similarity=0.448 Sum_probs=60.2
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
..|.|.|++|++|+.. +.+||||++.+. +. ...+|++. ++.||.|||+|.|.+...+.. .+.|.|||++.
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~--~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~ 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN--EV--KVARTKVR-EGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAK 73 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CE--eEEEeecC-CCCCCccCCEEEEecCCCCcC--EEEEEEEECCC
Confidence 4699999999999875 368999999982 22 34577765 589999999999987655544 58889999998
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.+++++
T Consensus 74 ~~~d~~ 79 (126)
T cd08400 74 RSKDSE 79 (126)
T ss_pred CCCCCe
Confidence 888764
No 83
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.55 E-value=3e-14 Score=82.13 Aligned_cols=79 Identities=44% Similarity=0.630 Sum_probs=68.5
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.|++|++|...+..+..+||+++.+..... ...+|+++..+.+|.|+++|.|.+...... .|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCC
Confidence 789999999999988888999999999875433 568899999999999999999998877766 5999999999887
Q ss_pred CCC
Q psy11037 126 KNE 128 (129)
Q Consensus 126 ~~d 128 (129)
+++
T Consensus 77 ~~~ 79 (85)
T PF00168_consen 77 KDE 79 (85)
T ss_dssp SEE
T ss_pred CCC
Confidence 654
No 84
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=7.7e-14 Score=85.36 Aligned_cols=78 Identities=44% Similarity=0.659 Sum_probs=64.7
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.|++|++|...+..+.+||||++.+.. ....+|+++.++.+|.|+|+|.|.+.... ...+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~~~~~~~--~~~l~~~v~d~~~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEVPVPSRV--RAVLKVEVYDWDRGG 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----CcceeeceecCCCCCcccccEEEEeccCC--CCEEEEEEEeCCCCC
Confidence 578999999999988888899999999832 23468888999999999999999987543 236899999999887
Q ss_pred CCCC
Q psy11037 126 KNEA 129 (129)
Q Consensus 126 ~~d~ 129 (129)
+++|
T Consensus 75 ~~~~ 78 (115)
T cd04040 75 KDDL 78 (115)
T ss_pred CCCc
Confidence 7764
No 85
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.54 E-value=1.4e-13 Score=85.63 Aligned_cols=82 Identities=34% Similarity=0.477 Sum_probs=66.0
Q ss_pred CEEEEEEEEEeCCCCCC--CCCCCCcEEEEEEEeCCe-EeeEEeeeeccCCC-CCccCcEEEEEecCCCCCccEEEEEEE
Q psy11037 44 NRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQ-RVAKKKTHVKKRTL-NPVYNESFVFEVPADNLDSVSLELLLL 119 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~--~~~~~~pyv~~~l~~~~~-~~~~~~T~~~~~~~-~P~~~e~~~f~i~~~~~~~~~l~i~v~ 119 (129)
..|.|.|++|++|+..+ ..+..||||++++..... ...+.+|+++.++. +|.|+|+|.|.+...+.. .|.|+||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~--~l~~~V~ 79 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELA--FLRFVVY 79 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeE--EEEEEEE
Confidence 36899999999999887 477899999999875443 34667888877665 999999999998865543 6899999
Q ss_pred EcCCCCCCC
Q psy11037 120 DWDRVTKNE 128 (129)
Q Consensus 120 d~~~~~~~d 128 (129)
|++.. +++
T Consensus 80 d~~~~-~~~ 87 (128)
T cd00275 80 DEDSG-DDD 87 (128)
T ss_pred eCCCC-CCc
Confidence 99876 554
No 86
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=1.6e-13 Score=84.91 Aligned_cols=80 Identities=30% Similarity=0.443 Sum_probs=64.3
Q ss_pred CEEEEEEEEEeCCCCCCC-CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 44 NRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~-~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
+.|.|.|++|++|+..+. .+.+||||++.+... ....+|+++.++.+|.|+|.|.|.+.. . ...|.|+|||++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~-~--~~~l~~~v~d~~ 75 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS-L--TEPLNLTVYDFN 75 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC-C--CCEEEEEEEecC
Confidence 568999999999986553 456899999998432 246788999999999999999999873 2 247999999999
Q ss_pred CCCCCCC
Q psy11037 123 RVTKNEA 129 (129)
Q Consensus 123 ~~~~~d~ 129 (129)
..+++++
T Consensus 76 ~~~~d~~ 82 (124)
T cd04044 76 DKRKDKL 82 (124)
T ss_pred CCCCCce
Confidence 8776653
No 87
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.53 E-value=2.4e-13 Score=85.22 Aligned_cols=78 Identities=29% Similarity=0.391 Sum_probs=62.8
Q ss_pred CEEEEEEEEEeCCCCCCCC----------CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccE
Q psy11037 44 NRFTIVVLKARNLPKMDVT----------GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVS 113 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~----------~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~ 113 (129)
+.|.|.|++|++|...+.. +.+||||++.+. +. ...+|+++.++.+|.|||+|.|.+... ..
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~----~~ 75 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DT--HIGKTSTKPKTNSPVWNEEFTTEVHNG----RN 75 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CE--EEeEEeEcCCCCCCCcceeEEEEcCCC----CE
Confidence 5689999999999887752 578999999983 22 335788888999999999999999732 37
Q ss_pred EEEEEEEcCCCCCCCC
Q psy11037 114 LELLLLDWDRVTKNEA 129 (129)
Q Consensus 114 l~i~v~d~~~~~~~d~ 129 (129)
|.|.|||++..+++++
T Consensus 76 l~~~v~d~~~~~~~~~ 91 (132)
T cd04014 76 LELTVFHDAAIGPDDF 91 (132)
T ss_pred EEEEEEeCCCCCCCce
Confidence 8999999988776653
No 88
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.52 E-value=1.7e-13 Score=88.38 Aligned_cols=77 Identities=32% Similarity=0.440 Sum_probs=62.3
Q ss_pred CCEEEEEEEEEeCCCCCC------------------------------CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCC
Q psy11037 43 ANRFTIVVLKARNLPKMD------------------------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTL 92 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~------------------------------~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~ 92 (129)
.+.|.|+|.+|++|+.++ ..+.+||||++.+. +. ...+|+++.++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~--~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GA--RVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--Ce--EeeEEEEeCCCC
Confidence 478999999999999887 24568999999982 22 346899999999
Q ss_pred CCccCcEEEEEecCCCCCccEEEEEEEEcCCCCC
Q psy11037 93 NPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK 126 (129)
Q Consensus 93 ~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~~ 126 (129)
||.|||+|.|.+.... ..|.|+|||+|.++.
T Consensus 82 nP~WnE~F~~~~~~~~---~~l~~~V~d~d~~~~ 112 (158)
T cd04015 82 NPVWNESFHIYCAHYA---SHVEFTVKDNDVVGA 112 (158)
T ss_pred CCccceEEEEEccCCC---CEEEEEEEeCCCcCC
Confidence 9999999999876443 369999999998754
No 89
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.52 E-value=3e-13 Score=83.67 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=57.9
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
+.|.|.|++|++|...+ ..+|||.+.+ +. .+.+|++.+. .||.|||.|.|.+.... ..|.|+|||+|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~~---~~L~v~V~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QN--VKSTTIAVRG-SQPCWEQDFMFEINRLD---LGLVIELWNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CC--EEeEeeECCC-CCCceeeEEEEEEcCCC---CEEEEEEEeCCC
Confidence 47999999999997654 4589999999 33 4667888766 49999999999986533 249999999996
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
+ +|||
T Consensus 70 ~-~DD~ 74 (127)
T cd08394 70 I-WDTL 74 (127)
T ss_pred c-CCCc
Confidence 6 6664
No 90
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.51 E-value=4.4e-13 Score=83.35 Aligned_cols=77 Identities=32% Similarity=0.436 Sum_probs=62.4
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
..|.|++.+|+ |...+..+.+||||++++. +. ...+|+++.++.+|.|+|+|.|.+... ..|.|+|||++.
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~--~~~kT~v~~~t~~P~Wne~f~~~~~~~----~~l~~~V~d~~~ 72 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQ--PPKKTEVSKKTSNPKWNEHFTVLVTPQ----STLEFKVWSHHT 72 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--Cc--ccEEeeeeCCCCCCccccEEEEEeCCC----CEEEEEEEeCCC
Confidence 46899999998 6555557789999999982 21 367888899999999999999998643 379999999998
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
.+++++
T Consensus 73 ~~~~~~ 78 (125)
T cd04021 73 LKADVL 78 (125)
T ss_pred CCCCcE
Confidence 877764
No 91
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=2.1e-13 Score=84.88 Aligned_cols=73 Identities=37% Similarity=0.595 Sum_probs=60.2
Q ss_pred EEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCCCCCC
Q psy11037 50 VLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 50 i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
|++|++|.. ..+.+||||++++. + .+.+|++++++.+|.|+|+|.|.+.........|.|+|||++..+++++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR--G---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL 74 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC--C---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCce
Confidence 688999988 56789999999982 2 3578999999999999999999987653344579999999998877764
No 92
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.50 E-value=1.8e-13 Score=84.94 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeecc-CCCCCccCcEEEEEecCCCC--CccEEEEEEEEcC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNL--DSVSLELLLLDWD 122 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~-~~~~P~~~e~~~f~i~~~~~--~~~~l~i~v~d~~ 122 (129)
|.|.|++|++|...+..+.+||||++.+.. ..+.+|.+.. .+.+|.|||.|.|.+....+ ....|.|+|||++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 789999999999998888999999999843 1356777764 58999999999999977642 2347999999999
Q ss_pred CCCCCCC
Q psy11037 123 RVTKNEA 129 (129)
Q Consensus 123 ~~~~~d~ 129 (129)
..++++|
T Consensus 78 ~~~~~~~ 84 (125)
T cd04051 78 PSLGDKL 84 (125)
T ss_pred CCCCCCc
Confidence 8777764
No 93
>KOG1013|consensus
Probab=99.47 E-value=1.6e-13 Score=95.51 Aligned_cols=102 Identities=30% Similarity=0.525 Sum_probs=94.3
Q ss_pred cCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecC
Q psy11037 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106 (129)
Q Consensus 27 ~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~ 106 (129)
.+.+|+|.+++.|......|.|++++|.+|..+|.++.+||||+.++.++-....+++|.+.+++++|.|++.|.|.+.+
T Consensus 216 ~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 216 DEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred hhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 36789999999999999999999999999999999999999999999887777788899999999999999999999999
Q ss_pred CCCCccEEEEEEEEcCCCCCCC
Q psy11037 107 DNLDSVSLELLLLDWDRVTKNE 128 (129)
Q Consensus 107 ~~~~~~~l~i~v~d~~~~~~~d 128 (129)
..+..+.+.|.|||++..+..|
T Consensus 296 gdLa~~kv~lsvgd~~~G~s~d 317 (362)
T KOG1013|consen 296 GDLAYKKVALSVGDYDIGKSND 317 (362)
T ss_pred cchhcceEEEeecccCCCcCcc
Confidence 9999999999999999875554
No 94
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=3.9e-13 Score=84.01 Aligned_cols=83 Identities=28% Similarity=0.394 Sum_probs=68.1
Q ss_pred EEEEEEEEEeCCCCC--CCCC--CCCcEEEEEEEeCCeEeeEEeeeeccCCCC--CccCcEEEEEecC------------
Q psy11037 45 RFTIVVLKARNLPKM--DVTG--LADPYVKVYLLYKGQRVAKKKTHVKKRTLN--PVYNESFVFEVPA------------ 106 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~--~~~~--~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~--P~~~e~~~f~i~~------------ 106 (129)
.|+|.|..++++... ...+ .+||||+..+.+. ...+++|.++.++++ |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~ 78 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK 78 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence 378999999996543 3345 4999999998764 446889999999999 9999999999766
Q ss_pred ---------CCCCccEEEEEEEEcCCCCCCCC
Q psy11037 107 ---------DNLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 107 ---------~~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
+.+....|.|+|||.|.+++||+
T Consensus 79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~ 110 (133)
T cd08374 79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDF 110 (133)
T ss_pred ccccccCcceEecCcEEEEEEEECcccCCCCc
Confidence 44556789999999999998885
No 95
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.46 E-value=8e-13 Score=80.99 Aligned_cols=74 Identities=30% Similarity=0.523 Sum_probs=59.6
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.|++|++|+.. +.+||||.+++. +. ...+|+++.+ .+|.|||+|.|.+...++....|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 68999999999876 679999999983 22 3467888888 9999999999999876655557888899987654
Q ss_pred CC
Q psy11037 126 KN 127 (129)
Q Consensus 126 ~~ 127 (129)
++
T Consensus 74 ~~ 75 (117)
T cd08383 74 RD 75 (117)
T ss_pred Ce
Confidence 43
No 96
>KOG1328|consensus
Probab=99.45 E-value=1.6e-13 Score=103.83 Aligned_cols=105 Identities=30% Similarity=0.522 Sum_probs=89.9
Q ss_pred cccCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeE--eeEEeeeeccCCCCCccCcEEEE
Q psy11037 25 IKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR--VAKKKTHVKKRTLNPVYNESFVF 102 (129)
Q Consensus 25 ~~~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~--~~~~~T~~~~~~~~P~~~e~~~f 102 (129)
++.-..|.+.+.+.|......|.|.|+.|+++.+.|.+|.+||||.+.+.|.-.. ...++|+++.+++||+|+|+|.|
T Consensus 928 la~~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeF 1007 (1103)
T KOG1328|consen 928 LADHQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEF 1007 (1103)
T ss_pred HhhCcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheee
Confidence 3445668899999999999999999999999999999999999999999864321 23578999999999999999999
Q ss_pred EecCCCCC--ccEEEEEEEEcCCCCCCCC
Q psy11037 103 EVPADNLD--SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 103 ~i~~~~~~--~~~l~i~v~d~~~~~~~d~ 129 (129)
.++.+.-. ...|.|+|.|+|-+..+||
T Consensus 1008 sVp~e~c~te~Am~~FTVMDHD~L~sNDF 1036 (1103)
T KOG1328|consen 1008 SVPPEPCSTETAMLHFTVMDHDYLRSNDF 1036 (1103)
T ss_pred ecCccccccccceEEEEeeccceeccccc
Confidence 99776432 4679999999999988887
No 97
>KOG0905|consensus
Probab=99.36 E-value=7.1e-13 Score=104.24 Aligned_cols=99 Identities=30% Similarity=0.526 Sum_probs=86.1
Q ss_pred ccCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEE-e
Q psy11037 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-V 104 (129)
Q Consensus 26 ~~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~-i 104 (129)
.++..|+|++++.| .+++|.|.|+.+++|.-...+..+||||++|++|+.++..+++|++++++.+|.|||.+.|. +
T Consensus 1508 p~~iggqV~LsIsY--~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISY--NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred ccccCceEEEEEEE--cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence 34445799999999 58999999999999977766778999999999999888889999999999999999999998 6
Q ss_pred cCCCCCccEEEEEEEEcCCCCC
Q psy11037 105 PADNLDSVSLELLLLDWDRVTK 126 (129)
Q Consensus 105 ~~~~~~~~~l~i~v~d~~~~~~ 126 (129)
+.+.+..+.|+++||..+....
T Consensus 1586 p~~~l~qReLQ~sVls~~~~~e 1607 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLE 1607 (1639)
T ss_pred chhhhhhheeeeeeecccceee
Confidence 6666776789999999887543
No 98
>PLN02223 phosphoinositide phospholipase C
Probab=99.30 E-value=3e-11 Score=89.95 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=65.9
Q ss_pred CEEEEEEEEEeCCCCC-----CCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEE
Q psy11037 44 NRFTIVVLKARNLPKM-----DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 118 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~-----~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v 118 (129)
..|.|+|+.|.++... +....+||||++.+..-.....+++|.+..+++||.|||+|.|++..++++ .|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCce--EEEEEE
Confidence 4689999999987411 223568999999986422222455677888999999999999999999988 799999
Q ss_pred EEcCCCCCCCC
Q psy11037 119 LDWDRVTKNEA 129 (129)
Q Consensus 119 ~d~~~~~~~d~ 129 (129)
+|+|..++++|
T Consensus 487 ~D~D~~~~ddf 497 (537)
T PLN02223 487 YDYEVSTADAF 497 (537)
T ss_pred EecCCCCCCcE
Confidence 99998777765
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.26 E-value=2.5e-10 Score=67.08 Aligned_cols=76 Identities=51% Similarity=0.715 Sum_probs=62.0
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.|++++++.........+||+++++.+.+ ....+|+....+.+|.|+++|.|.+.... ...|.|+||+.+..+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence 67899999999888766678999999986443 24577888888889999999999987764 347999999988654
No 100
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.25 E-value=3e-11 Score=100.62 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=64.8
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
-|.|.|++++|++|. ...+.+||||++.+. + ..+.+|++++++.||.|||.|+|.+..+... ..|+|+|||+|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g---~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~-~~l~iev~d~d 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLG---N-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKG-QKLHISCKSKN 2051 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEEC---C-CCcccccccCCCCCCCcccceeeeecCCCCC-CceEEEEEecC
Confidence 488999999999998 446789999999993 2 1356899999999999999999887766432 35999999999
Q ss_pred CCCCCC
Q psy11037 123 RVTKNE 128 (129)
Q Consensus 123 ~~~~~d 128 (129)
.+++|.
T Consensus 2052 ~f~kd~ 2057 (2102)
T PLN03200 2052 TFGKSS 2057 (2102)
T ss_pred ccCCCC
Confidence 987663
No 101
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.19 E-value=2.1e-10 Score=86.75 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCEEEEEEEEEeCCCCC------CCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEE
Q psy11037 43 ANRFTIVVLKARNLPKM------DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL 116 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~------~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i 116 (129)
...|.|.|+.|.++... +....+||||++.+-.......+.+|++..++.||.|+|+|.|++..++++ .|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCcee--EEEE
Confidence 35799999999986421 223457999999986422223456788889999999999999999999988 8999
Q ss_pred EEEEcCCCCCCCC
Q psy11037 117 LLLDWDRVTKNEA 129 (129)
Q Consensus 117 ~v~d~~~~~~~d~ 129 (129)
.|+|+|..+++||
T Consensus 546 ~V~d~d~~~~ddf 558 (598)
T PLN02230 546 EVHEHDINEKDDF 558 (598)
T ss_pred EEEECCCCCCCCE
Confidence 9999998777775
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=99.19 E-value=2.5e-10 Score=86.46 Aligned_cols=85 Identities=24% Similarity=0.333 Sum_probs=66.4
Q ss_pred CCEEEEEEEEEeCCCCC------CCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEE
Q psy11037 43 ANRFTIVVLKARNLPKM------DVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL 116 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~------~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i 116 (129)
...|.|.|+.|.+++.. +....+||||++.+..-.....+.+|+++.++.||.|+++|.|++..++++ .|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEEE
Confidence 35799999999887431 122446999999976422233566899998889999999999999988887 7899
Q ss_pred EEEEcCCCCCCCC
Q psy11037 117 LLLDWDRVTKNEA 129 (129)
Q Consensus 117 ~v~d~~~~~~~d~ 129 (129)
+|||+|..+.+||
T Consensus 547 ~V~D~D~~~~ddf 559 (599)
T PLN02952 547 EVREYDMSEKDDF 559 (599)
T ss_pred EEEecCCCCCCCe
Confidence 9999998877765
No 103
>PLN03008 Phospholipase D delta
Probab=99.17 E-value=1.6e-10 Score=89.65 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=47.0
Q ss_pred CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCCC
Q psy11037 63 GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK 126 (129)
Q Consensus 63 ~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~~ 126 (129)
+.+||||++.+ +. ....+|++++++.||.|||+|.|.+.... ..|.|+|||+|.++.
T Consensus 75 ~tSDPYV~I~L---g~-~rv~RTrVi~n~~NPvWNE~F~f~vah~~---s~L~f~VkD~D~~ga 131 (868)
T PLN03008 75 ITSDPYVTVVV---PQ-ATLARTRVLKNSQEPLWDEKFNISIAHPF---AYLEFQVKDDDVFGA 131 (868)
T ss_pred CCCCceEEEEE---CC-cceeeEEeCCCCCCCCcceeEEEEecCCC---ceEEEEEEcCCccCC
Confidence 35799999999 22 23568999999999999999999988643 269999999999874
No 104
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.14 E-value=3.8e-10 Score=68.68 Aligned_cols=60 Identities=33% Similarity=0.473 Sum_probs=47.3
Q ss_pred CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCCCCC
Q psy11037 62 TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128 (129)
Q Consensus 62 ~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~~~d 128 (129)
.|.+||||.+.+. +. ...+|+++.++.||.|||+|.|.+.... ...|.|.|||++.. +++
T Consensus 10 ~G~~dPYv~v~v~--~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~~~-~d~ 69 (111)
T cd04052 10 TGLLSPYAELYLN--GK--LVYTTRVKKKTNNPSWNASTEFLVTDRR--KSRVTVVVKDDRDR-HDP 69 (111)
T ss_pred CCCCCceEEEEEC--CE--EEEEEeeeccCCCCccCCceEEEecCcC--CCEEEEEEEECCCC-CCC
Confidence 5779999999982 21 3467888888999999999999987543 23689999999987 554
No 105
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.13 E-value=6.6e-10 Score=83.94 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=65.3
Q ss_pred CCEEEEEEEEEeCCC--C----CCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEE
Q psy11037 43 ANRFTIVVLKARNLP--K----MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLEL 116 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~--~----~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i 116 (129)
...|.|.|+.|.++. . .+.....||||++.+........+.+|+++.++.+|.|+|+|.|.+..++++ .|+|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEE
Confidence 346899999998742 1 1123457999999986322223466899998889999999999999998888 7999
Q ss_pred EEEEcCCCCCCCC
Q psy11037 117 LLLDWDRVTKNEA 129 (129)
Q Consensus 117 ~v~d~~~~~~~d~ 129 (129)
.|||+|..+.++|
T Consensus 529 ~V~d~D~~~~ddf 541 (581)
T PLN02222 529 EVHEYDMSEKDDF 541 (581)
T ss_pred EEEECCCCCCCcE
Confidence 9999998776764
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.08 E-value=3.4e-09 Score=61.93 Aligned_cols=76 Identities=47% Similarity=0.650 Sum_probs=60.7
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 125 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~~ 125 (129)
|.|.+++|+++.........+||+.+.+.. ....+|.+...+.+|.|++.|.|.+.... ...+.|+||+.+..+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~--~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDPE--SDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCCC--CCEEEEEEEecCCCC
Confidence 468999999998766677899999999853 24568888888899999999999987642 236899999988664
Q ss_pred CC
Q psy11037 126 KN 127 (129)
Q Consensus 126 ~~ 127 (129)
.+
T Consensus 75 ~~ 76 (102)
T cd00030 75 KD 76 (102)
T ss_pred CC
Confidence 33
No 107
>KOG0169|consensus
Probab=99.08 E-value=5.9e-10 Score=85.07 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=67.2
Q ss_pred EEEEEEEEEeCCCCCCC----CCCCCcEEEEEEEeCCeEeeEEeee-eccCCCCCccCcEEEEEecCCCCCccEEEEEEE
Q psy11037 45 RFTIVVLKARNLPKMDV----TGLADPYVKVYLLYKGQRVAKKKTH-VKKRTLNPVYNESFVFEVPADNLDSVSLELLLL 119 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~----~~~~~pyv~~~l~~~~~~~~~~~T~-~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~ 119 (129)
.|.|.|+.|.++..... ....||||.+.+..-.......+|+ +..++.+|.|+|+|.|++..++++ .|+|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELA--liRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELA--LIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecccee--EEEEEEE
Confidence 59999999997654322 2457999888865322233567888 668899999999999999999999 7999999
Q ss_pred EcCCCCCCCC
Q psy11037 120 DWDRVTKNEA 129 (129)
Q Consensus 120 d~~~~~~~d~ 129 (129)
|+|..++|||
T Consensus 695 d~d~~~~ddF 704 (746)
T KOG0169|consen 695 DYDYIGKDDF 704 (746)
T ss_pred ecCCCCcccc
Confidence 9999999987
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.06 E-value=2e-09 Score=85.33 Aligned_cols=80 Identities=41% Similarity=0.642 Sum_probs=69.9
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
.+.|.|.+..|.+|+..+..+..||||++.+- ....++|+++++++||.|||.+..++.+.... .+.+.|+|||
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln----~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D--~~~i~v~Dwd 1112 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLN----EKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKD--VLTINVNDWD 1112 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEec----ceecccccchhccCCCCccccceEeeeccccc--eEEEEEeecc
Confidence 57899999999999999999999999999982 22478999999999999999999999877666 6888899999
Q ss_pred CCCCCC
Q psy11037 123 RVTKNE 128 (129)
Q Consensus 123 ~~~~~d 128 (129)
...++|
T Consensus 1113 ~~~knd 1118 (1227)
T COG5038 1113 SGEKND 1118 (1227)
T ss_pred cCCCcc
Confidence 877665
No 109
>PLN02228 Phosphoinositide phospholipase C
Probab=99.05 E-value=2.1e-09 Score=81.09 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=65.3
Q ss_pred CEEEEEEEEEeCCCC---CC---CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCcc-CcEEEEEecCCCCCccEEEE
Q psy11037 44 NRFTIVVLKARNLPK---MD---VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLEL 116 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~---~~---~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~-~e~~~f~i~~~~~~~~~l~i 116 (129)
..|.|.|+.|.+|.. .. .....||||++.+........+.+|+++.++.+|.| +++|.|.+..++++ .|+|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lRf 508 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLWF 508 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCcee--EEEE
Confidence 469999999998731 11 234479999999864322335678888888899999 99999999998888 8999
Q ss_pred EEEEcCCCCCCCC
Q psy11037 117 LLLDWDRVTKNEA 129 (129)
Q Consensus 117 ~v~d~~~~~~~d~ 129 (129)
.|+|+|..+.++|
T Consensus 509 ~V~D~d~~~~d~f 521 (567)
T PLN02228 509 KVQDYDNDTQNDF 521 (567)
T ss_pred EEEeCCCCCCCCE
Confidence 9999987766664
No 110
>KOG1011|consensus
Probab=99.03 E-value=4.2e-10 Score=85.08 Aligned_cols=73 Identities=36% Similarity=0.538 Sum_probs=63.6
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
.++.+++++|.+|...+-.|.+||||...+ + +.+.+|+++...+||+|+|.|+|..++.... |.+.|||.|.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv---~--ktkrrtrti~~~lnpvw~ekfhfechnstdr---ikvrvwded~ 366 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV---G--KTKRRTRTIHQELNPVWNEKFHFECHNSTDR---IKVRVWDEDN 366 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEee---c--ccchhhHhhhhccchhhhhheeeeecCCCce---eEEEEecCcc
Confidence 578899999999999999999999999987 3 3577899999999999999999998876544 8899999885
Q ss_pred C
Q psy11037 124 V 124 (129)
Q Consensus 124 ~ 124 (129)
.
T Consensus 367 d 367 (1283)
T KOG1011|consen 367 D 367 (1283)
T ss_pred c
Confidence 3
No 111
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.00 E-value=5.3e-09 Score=66.52 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=53.1
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
.-|.|.|++|++|+.++ ++||.+.+. + ....+|.++.++.+|.|+|.|.|...... ..|.|.||..+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~--~~vaRT~v~~~~~nP~W~E~F~f~~~~~~---~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLD--K--TLYARTTSKLKTDTLFWGEHFEFSNLPPV---SVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEEC--C--EEEEEEEEEcCCCCCcceeeEEecCCCcc---cEEEEEEEEcc
Confidence 45899999999998764 799999982 2 24568999999999999999999754432 25889998654
No 112
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.91 E-value=2.4e-08 Score=59.63 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=52.0
Q ss_pred EEEEEEEEeCCCCCC---CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 46 FTIVVLKARNLPKMD---VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 46 L~v~i~~a~~l~~~~---~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
|.|.|.+++++.-.+ ..+.++|||.+++. . ..+.+|++ +.||.|||.|.|++.. ...+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve---d-~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE---D-VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC---C-EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeCC
Confidence 578899999998776 46778999999982 2 23566655 4799999999999943 237999999975
Q ss_pred C
Q psy11037 123 R 123 (129)
Q Consensus 123 ~ 123 (129)
.
T Consensus 70 ~ 70 (109)
T cd08689 70 G 70 (109)
T ss_pred C
Confidence 4
No 113
>KOG1264|consensus
Probab=98.84 E-value=2.7e-08 Score=76.92 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=65.1
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCC-eEeeEEeeeeccCCCCCccC-cEEEEEecCCCCCccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~-~~~~~~~T~~~~~~~~P~~~-e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
..|.|.++.|++|+... .+-..|||.+.+..-. .....++|.+..+++||+|+ +.|+|.|..++.+ .|+|.|++.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEecc
Confidence 46889999999999664 4446799999986422 22345566678999999999 9999999999988 899999999
Q ss_pred CCCCCC
Q psy11037 122 DRVTKN 127 (129)
Q Consensus 122 ~~~~~~ 127 (129)
|.++..
T Consensus 1142 Dmfs~~ 1147 (1267)
T KOG1264|consen 1142 DMFSDP 1147 (1267)
T ss_pred cccCCc
Confidence 998644
No 114
>KOG1013|consensus
Probab=98.74 E-value=4.2e-10 Score=78.68 Aligned_cols=100 Identities=32% Similarity=0.488 Sum_probs=84.9
Q ss_pred cceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEe-cCC
Q psy11037 29 GRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PAD 107 (129)
Q Consensus 29 ~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i-~~~ 107 (129)
..|.+.+.+-|+..+..+.+++..|++|..++.++..|||+++.++|...+..+.+|++..+++||.|+++..+.. ..+
T Consensus 78 ~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~ 157 (362)
T KOG1013|consen 78 TLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDD 157 (362)
T ss_pred hccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccc
Confidence 4588889999999999999999999999999999999999999999877666678888999999999999988874 444
Q ss_pred CCCccEEEEEEEEcCCCCCCC
Q psy11037 108 NLDSVSLELLLLDWDRVTKNE 128 (129)
Q Consensus 108 ~~~~~~l~i~v~d~~~~~~~d 128 (129)
....+.+++.|+|.+.+.+.+
T Consensus 158 ~~~~K~~Rk~vcdn~~~~~~~ 178 (362)
T KOG1013|consen 158 DTHLKVLRKVVCDNDKKTHNE 178 (362)
T ss_pred hhhhhhhheeeccCccccccc
Confidence 444556788899988876554
No 115
>KOG2059|consensus
Probab=98.73 E-value=2.9e-08 Score=75.48 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=67.6
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
..|.|.|.+|++|+..+..+..|||+.+.+. +....+|.++.+++.|-|.|.|.|.++...- -|.|-|||.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~---~l~fYv~D~d- 76 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEEVCRTATVEKSLCPFFGEEFYFEIPRTFR---YLSFYVWDRD- 76 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec----chhhhhhhhhhhhcCCccccceEEecCccee---eEEEEEeccc-
Confidence 4588999999999999999999999999983 3356789999999999999999999886553 4899999999
Q ss_pred CCCCCC
Q psy11037 124 VTKNEA 129 (129)
Q Consensus 124 ~~~~d~ 129 (129)
+++|++
T Consensus 77 ~~~D~~ 82 (800)
T KOG2059|consen 77 LKRDDI 82 (800)
T ss_pred cccccc
Confidence 888763
No 116
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.62 E-value=1.7e-07 Score=74.82 Aligned_cols=78 Identities=33% Similarity=0.492 Sum_probs=63.0
Q ss_pred CEEEEEEEEEeCCCCCC--CCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~--~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
|+|.|+|..|++|...+ ..+..|||+.+.... ...-||++.+++.||+|||++...+..-. ..|.++|||.
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~----r~~gkT~v~~nt~nPvwNEt~Yi~lns~~---d~L~LslyD~ 508 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD----RVIGKTRVKKNTLNPVWNETFYILLNSFT---DPLNLSLYDF 508 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEecc----ccCCccceeeccCCccccceEEEEecccC---CceeEEEEec
Confidence 78999999999998887 578899999998521 12338999999999999999988876432 2588999998
Q ss_pred CCCCCCC
Q psy11037 122 DRVTKNE 128 (129)
Q Consensus 122 ~~~~~~d 128 (129)
+...+|+
T Consensus 509 n~~~sd~ 515 (1227)
T COG5038 509 NSFKSDK 515 (1227)
T ss_pred cccCCcc
Confidence 8776664
No 117
>KOG2059|consensus
Probab=98.57 E-value=1.3e-07 Score=72.04 Aligned_cols=106 Identities=28% Similarity=0.409 Sum_probs=78.7
Q ss_pred ccccccCcceEEEEEEEEeC--CCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcE
Q psy11037 22 SSEIKSQGRGEILLSLCWQP--AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 99 (129)
Q Consensus 22 ~~~~~~~~~G~l~~~~~~~~--~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~ 99 (129)
+++-+.+..|+|++.+.... +...+.+.+++++++.+... +.+|||+++....+. .....+|++++++.+|.|+|.
T Consensus 107 ~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~-~~~~~~T~~~kkt~~p~~~Ev 184 (800)
T KOG2059|consen 107 PVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPS-KLKEKKTKVKKKTTNPQFDEV 184 (800)
T ss_pred ccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeC-CCCCcceEEeecccc-hhhccccceeeeccCcchhhh
Confidence 56777788999999888754 45678888888888877764 449999999875432 223368899999999999999
Q ss_pred EEEEecCCC-------------CCccEEEEEEEE-cCCCCCCCC
Q psy11037 100 FVFEVPADN-------------LDSVSLELLLLD-WDRVTKNEA 129 (129)
Q Consensus 100 ~~f~i~~~~-------------~~~~~l~i~v~d-~~~~~~~d~ 129 (129)
|.|.+..+. .....|.+++|+ ++....++|
T Consensus 185 ~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~F 228 (800)
T KOG2059|consen 185 FYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVF 228 (800)
T ss_pred eeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhh
Confidence 999987661 112468899999 455444443
No 118
>KOG1011|consensus
Probab=98.50 E-value=1.6e-06 Score=66.26 Aligned_cols=98 Identities=22% Similarity=0.371 Sum_probs=74.5
Q ss_pred ccCcceEEEEEEEE--eCC--CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeC--CeEeeEEeeeeccCCCCCccCcE
Q psy11037 26 KSQGRGEILLSLCW--QPA--ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK--GQRVAKKKTHVKKRTLNPVYNES 99 (129)
Q Consensus 26 ~~~~~G~l~~~~~~--~~~--~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~--~~~~~~~~T~~~~~~~~P~~~e~ 99 (129)
-+.+.|++.+.+.. .|+ ..++.|+|+.|.+|.+.. .+...|||.+.+..+ +.++.+..|+...+++.|.|||+
T Consensus 1103 vedpvgevsvqvdlfthpgtgehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEt 1181 (1283)
T KOG1011|consen 1103 VEDPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNET 1181 (1283)
T ss_pred CCCCCceEEEEEEeecCCCCCcceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCce
Confidence 34566766665554 343 348999999999998874 677899999997632 34556778888999999999999
Q ss_pred EEEEecCCC-CCccEEEEEEEEcCCC
Q psy11037 100 FVFEVPADN-LDSVSLELLLLDWDRV 124 (129)
Q Consensus 100 ~~f~i~~~~-~~~~~l~i~v~d~~~~ 124 (129)
|+|-+.++. .....|.|.|.|++-.
T Consensus 1182 F~f~Lg~e~~Pe~YEL~~~VKDYCFA 1207 (1283)
T KOG1011|consen 1182 FHFFLGNEGGPEHYELQFCVKDYCFA 1207 (1283)
T ss_pred eEEEeccCCCCceEEEEEeehhheee
Confidence 999987775 3446788999887654
No 119
>KOG2060|consensus
Probab=98.36 E-value=8.7e-07 Score=63.36 Aligned_cols=93 Identities=30% Similarity=0.511 Sum_probs=71.6
Q ss_pred cCcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCC-CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEec
Q psy11037 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDV-TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 105 (129)
Q Consensus 27 ~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~ 105 (129)
...-|.|++.+.- ..+.+.|.+++|++|..+.. ...+.|||++|+++.+....+.+|+...++++|.|.+...|.-.
T Consensus 254 ~P~mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s 331 (405)
T KOG2060|consen 254 APNMGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS 331 (405)
T ss_pred Ccccccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC
Confidence 3445666665554 56889999999999976643 34689999999999887778889999999999999988888755
Q ss_pred CCCCCccEEEEEEEE-cCCC
Q psy11037 106 ADNLDSVSLELLLLD-WDRV 124 (129)
Q Consensus 106 ~~~~~~~~l~i~v~d-~~~~ 124 (129)
.+ .+.|.++||. +.++
T Consensus 332 p~---~k~Lq~tv~gdygRm 348 (405)
T KOG2060|consen 332 PP---GKYLQGTVWGDYGRM 348 (405)
T ss_pred CC---ccEEEEEEecccccc
Confidence 44 3568899986 4443
No 120
>KOG1031|consensus
Probab=98.34 E-value=1.2e-06 Score=66.23 Aligned_cols=80 Identities=34% Similarity=0.552 Sum_probs=67.6
Q ss_pred CEEEEEEEEEeCCCCCCCCC-CCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccC-cEEEEEecCCCCCccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDVTG-LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~-~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~-e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
++|-|+|..+++|+.++..+ ..|.||.+++.. ...+|.+-.+++||.|| +=|.|.+...+++.-.|.|.+.|+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n-----~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~ 77 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-----TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDH 77 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc-----cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecc
Confidence 67899999999999998754 479999999832 45688899999999999 667999998888877899999999
Q ss_pred CCCCCCC
Q psy11037 122 DRVTKNE 128 (129)
Q Consensus 122 ~~~~~~d 128 (129)
|..+-+|
T Consensus 78 dtysand 84 (1169)
T KOG1031|consen 78 DTYSAND 84 (1169)
T ss_pred ccccccc
Confidence 9876554
No 121
>KOG1326|consensus
Probab=98.31 E-value=7.6e-07 Score=70.19 Aligned_cols=80 Identities=31% Similarity=0.426 Sum_probs=65.1
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
..++|.+++|-+|...|.++.+|||+++.+ +......+...+.+++||+|.+.|.+....+... .+.++|||+|.
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~l---Gk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek--~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLL---GKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEK--DLIVEVYDHDL 687 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeee---ccchhhhhhhcCcCCCCcHHHHHHHhhcccchhh--cceeEEEEeec
Confidence 457799999999999999999999999998 4433445677889999999999887765544433 68899999999
Q ss_pred CCCCC
Q psy11037 124 VTKNE 128 (129)
Q Consensus 124 ~~~~d 128 (129)
.++|+
T Consensus 688 ~~~d~ 692 (1105)
T KOG1326|consen 688 EAQDE 692 (1105)
T ss_pred ccccc
Confidence 88765
No 122
>KOG1327|consensus
Probab=98.30 E-value=6.3e-06 Score=61.72 Aligned_cols=99 Identities=26% Similarity=0.392 Sum_probs=79.8
Q ss_pred CcceEEEEEEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEE-eCCeEeeEEeeeeccCCCCCccCcEEEEEecC
Q psy11037 28 QGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106 (129)
Q Consensus 28 ~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~-~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~ 106 (129)
...|.|.+.++.............+|++|..++..+.+|||..++-. .++.....++|.+++++++|.|.+ |.+..
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~ 196 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISL 196 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccch
Confidence 46689999999887777777778889999999999999999988744 456666778999999999999998 55554
Q ss_pred CCCC----ccEEEEEEEEcCCCCCCCC
Q psy11037 107 DNLD----SVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 107 ~~~~----~~~l~i~v~d~~~~~~~d~ 129 (129)
..++ ...+.+.+||++..+++++
T Consensus 197 ~~l~~~~~~~~~~i~~~d~~~~~~~~~ 223 (529)
T KOG1327|consen 197 QSLCSKDGNRPIQIECYDYDSNGKHDL 223 (529)
T ss_pred hhhcccCCCCceEEEEeccCCCCCcCc
Confidence 4433 2578899999999888764
No 123
>PLN02270 phospholipase D alpha
Probab=98.19 E-value=1.5e-05 Score=62.58 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=59.2
Q ss_pred CCEEEEEEEEEeCCCCCC------------------CCCCCCcEEEEEEEeCCeEeeEEeeeeccCC-CCCccCcEEEEE
Q psy11037 43 ANRFTIVVLKARNLPKMD------------------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFE 103 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~------------------~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~-~~P~~~e~~~f~ 103 (129)
.+.|.++|.+|++|+..+ ..+.++||+.+.+. .....+|+++.+. .||.|+|.|..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence 578999999999987521 12467999999983 2356789999774 699999999998
Q ss_pred ecCCCCCccEEEEEEEEcCCCCC
Q psy11037 104 VPADNLDSVSLELLLLDWDRVTK 126 (129)
Q Consensus 104 i~~~~~~~~~l~i~v~d~~~~~~ 126 (129)
+..... .+.|+|.|.|.++.
T Consensus 83 ~ah~~~---~v~f~vkd~~~~g~ 102 (808)
T PLN02270 83 CAHMAS---NIIFTVKDDNPIGA 102 (808)
T ss_pred eccCcc---eEEEEEecCCccCc
Confidence 876552 48999999887753
No 124
>KOG1328|consensus
Probab=98.09 E-value=4.5e-07 Score=69.71 Aligned_cols=78 Identities=31% Similarity=0.475 Sum_probs=60.4
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEe--------------------------eEEeeeeccCCCCCccC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRV--------------------------AKKKTHVKKRTLNPVYN 97 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~--------------------------~~~~T~~~~~~~~P~~~ 97 (129)
..+.|.++.+++|..++.+|.+|||+.+.+.|..... -.+-|.++.+++||.|+
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~ 193 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWS 193 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchh
Confidence 4567888999999999999999999998876532110 02346788899999999
Q ss_pred cEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 98 ESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 98 e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
|.|.|.|..-. +..+++-+||+|-
T Consensus 194 EkF~F~IeDv~--tDqfHlDIWDHDD 217 (1103)
T KOG1328|consen 194 EKFQFTIEDVQ--TDQFHLDIWDHDD 217 (1103)
T ss_pred hheeeehhccc--cceeeeecccCCc
Confidence 99999987443 3468888999874
No 125
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.89 E-value=1.2e-05 Score=46.51 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=54.8
Q ss_pred EEEEEEEeCCCCCCCCCC-CCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEE
Q psy11037 47 TIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 120 (129)
Q Consensus 47 ~v~i~~a~~l~~~~~~~~-~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d 120 (129)
.++++.|+++.....-+. +.-|++-.+.-+ +....+|.+.+...||.|+|+|.|.+....+....|.|+|+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~ 74 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT 74 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec
Confidence 478899999987765443 344565444322 234667888899999999999999999888888889999987
No 126
>KOG1326|consensus
Probab=97.78 E-value=5.4e-06 Score=65.58 Aligned_cols=90 Identities=23% Similarity=0.276 Sum_probs=69.6
Q ss_pred EEEEEeC-CCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEE---ecCC---
Q psy11037 35 LSLCWQP-AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE---VPAD--- 107 (129)
Q Consensus 35 ~~~~~~~-~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~---i~~~--- 107 (129)
++|.+.- ....+++.+.+|+.|...+..+.+|||+.+.+.. ..+.|.++..+++|.|+++..|. +.-+
T Consensus 196 ~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-----qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~ 270 (1105)
T KOG1326|consen 196 FSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG-----QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHL 270 (1105)
T ss_pred eEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc-----ccceeEeecCcCCCCccceeeccceeecCccch
Confidence 5565543 4567889999999999999999999999998743 35689999999999999999996 2111
Q ss_pred -CCCccEEEEEEEEcCCCCCCCC
Q psy11037 108 -NLDSVSLELLLLDWDRVTKNEA 129 (129)
Q Consensus 108 -~~~~~~l~i~v~d~~~~~~~d~ 129 (129)
......+.|++||.++.+.+||
T Consensus 271 ~~~~ppi~v~e~yd~dr~g~~ef 293 (1105)
T KOG1326|consen 271 VLKNPPIRVFEVYDLDRSGINEF 293 (1105)
T ss_pred hhcCCCeEEEEeehhhhhchHHh
Confidence 1112357899999999888775
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=97.30 E-value=0.0013 Score=51.23 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEc
Q psy11037 42 AANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 121 (129)
Q Consensus 42 ~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~ 121 (129)
=.+.+.++++.|+ ++ ..|+|..+... |. +..+|....++.+|+||+...|.+...+.. ..+|.|||+
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~--~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~ 118 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSF--GE--QTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFET 118 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEe--cc--eeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEec
Confidence 3577888888876 32 24887654421 33 578999999999999999999999888777 469999999
Q ss_pred CCCCCCC
Q psy11037 122 DRVTKNE 128 (129)
Q Consensus 122 ~~~~~~d 128 (129)
++++.++
T Consensus 119 ~~~s~n~ 125 (644)
T PLN02964 119 NRLSKNT 125 (644)
T ss_pred CCCCHHH
Confidence 9988765
No 128
>KOG1265|consensus
Probab=97.10 E-value=0.00078 Score=53.48 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=56.0
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEE--eCCeEeeEEeeeec-cCCCCCccC-cEEEEE-ecCCCCCccEEEEEE
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLL--YKGQRVAKKKTHVK-KRTLNPVYN-ESFVFE-VPADNLDSVSLELLL 118 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~--~~~~~~~~~~T~~~-~~~~~P~~~-e~~~f~-i~~~~~~~~~l~i~v 118 (129)
+.+.|.|++|.-|..+. ...||.+.+- |.....+..+|++. .+++||.|+ +.|.|. |-.++++ .|+|.|
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeeee
Confidence 56889999999998775 5589988863 43333345677755 678999998 778887 6666777 799999
Q ss_pred EEcCC
Q psy11037 119 LDWDR 123 (129)
Q Consensus 119 ~d~~~ 123 (129)
|+.+.
T Consensus 777 yeEgg 781 (1189)
T KOG1265|consen 777 YEEGG 781 (1189)
T ss_pred eccCC
Confidence 99763
No 129
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.45 E-value=0.056 Score=34.98 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=52.5
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEee-EEeeeeccCCCCCccCcEEEEEecCCCCC-ccEEEEEEEE
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLD 120 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~-~~~T~~~~~~~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d 120 (129)
...+.|.++.+.++... ...+-||++.+-.++.... ...|..+.. .++.|||-+.|++.-.++. ...|.|+||+
T Consensus 7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 35789999999888654 2357888887765543322 223333332 5789999999998777654 3568899998
Q ss_pred cCC
Q psy11037 121 WDR 123 (129)
Q Consensus 121 ~~~ 123 (129)
...
T Consensus 83 ~~~ 85 (158)
T cd08398 83 VKG 85 (158)
T ss_pred Eec
Confidence 653
No 130
>PLN02352 phospholipase D epsilon
Probab=96.41 E-value=0.021 Score=45.25 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred CCEEEEEEEEEeCCCCCC----CC-CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEE
Q psy11037 43 ANRFTIVVLKARNLPKMD----VT-GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL 117 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~----~~-~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~ 117 (129)
.+.|.++|.+|+-+...- .. ...+||+.+.+. + ....+| .+.-||.|+|.|..++...... .+.|+
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~--~~v~rt---~~~~~p~w~e~f~i~~ah~~~~--~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--N--KKVAKT---SHEYDRVWNQTFQILCAHPLDS--TITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--C--cEEecC---CCCCCCccccceeEEeeeecCC--cEEEE
Confidence 466777777776332221 11 123999999983 1 234455 4455999999999987665422 48888
Q ss_pred EEE
Q psy11037 118 LLD 120 (129)
Q Consensus 118 v~d 120 (129)
|.|
T Consensus 80 vk~ 82 (758)
T PLN02352 80 LKT 82 (758)
T ss_pred Eec
Confidence 877
No 131
>KOG3837|consensus
Probab=96.31 E-value=0.00054 Score=50.14 Aligned_cols=92 Identities=13% Similarity=0.224 Sum_probs=66.9
Q ss_pred EEEEeCCCCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC-------
Q psy11037 36 SLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN------- 108 (129)
Q Consensus 36 ~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~------- 108 (129)
.+..+.....|.+.|.++.+++........|.|+++.+........+.+|.+++.+.+|.|+|.|-..+..-.
T Consensus 359 ~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fq 438 (523)
T KOG3837|consen 359 AFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQ 438 (523)
T ss_pred hhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHH
Confidence 3444556778999999999887665444568899988643223446778999999999999999988876621
Q ss_pred --CCccEEEEEEEEcCCCCCC
Q psy11037 109 --LDSVSLELLLLDWDRVTKN 127 (129)
Q Consensus 109 --~~~~~l~i~v~d~~~~~~~ 127 (129)
..+..+.|++|+.+.+-+.
T Consensus 439 R~fkr~g~kfeifhkggf~rS 459 (523)
T KOG3837|consen 439 RRFKRLGKKFEIFHKGGFNRS 459 (523)
T ss_pred HHHHhcCeeEEEeeccccccc
Confidence 1235689999998876443
No 132
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.14 E-value=0.076 Score=35.04 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=48.7
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCC-ccEEEEEEEEcC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWD 122 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d~~ 122 (129)
..++|+|..+. .+..+......-||++.+-.++......+|.....+.++.|||-+.|++.-.++. ...|.|+||+..
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 46777777775 3323223334456666654443323333555555566799999999998777754 346889999864
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.05 E-value=0.12 Score=33.99 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=52.2
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEee-EEeeeeccCCCCCccCcEEEEEecCCCCC-ccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~-~~~T~~~~~~~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d~ 121 (129)
..+.|+++.+.++... ....+-||++.+-.++.... ...|........+.|+|.+.|++.-.++. ...|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 5688999999888752 23356677776655544332 23444444345689999999998776654 34688999986
Q ss_pred CC
Q psy11037 122 DR 123 (129)
Q Consensus 122 ~~ 123 (129)
..
T Consensus 86 ~~ 87 (173)
T cd08693 86 SK 87 (173)
T ss_pred cc
Confidence 53
No 134
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.90 E-value=0.17 Score=30.04 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=50.4
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEee-EEeeeeccCCCCCccCcEEEEEecCCCCC-ccEEEEEEEEcCC
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDR 123 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~-~~~T~~~~~~~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d~~~ 123 (129)
+.+.+....+..........+-||++.+-.++.... ...|..+.-...+.|||-+.|++.-.++. ...|.|++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 556666666665544333357888888766554332 23455444455689999999998777654 3568899998653
No 135
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=95.61 E-value=0.036 Score=34.68 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=43.6
Q ss_pred CCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC-------------CCCccEEEEEEEEcCCCCC
Q psy11037 65 ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-------------NLDSVSLELLLLDWDRVTK 126 (129)
Q Consensus 65 ~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~-------------~~~~~~l~i~v~d~~~~~~ 126 (129)
.++|+++.+..-. +....+|+++.++.-|.|+..+.|++..- -+....+.|+||+....+.
T Consensus 33 VN~yv~i~lSFl~-~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~ 106 (143)
T cd08683 33 VNSYVTIHLSFLP-EKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSA 106 (143)
T ss_pred cceEEEEEeccCC-CCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccc
Confidence 6889998854211 23577899999999999999999986511 1233568999999876443
No 136
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.28 E-value=0.28 Score=31.43 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=49.2
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEe-eEEeeeeccCCCCCccCcEEEEEecCCCCC-ccEEEEEEEEc
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRV-AKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 121 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~-~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d~ 121 (129)
..++|.+....+....+ ....+-||.+.+-.++... ....|.......++.|+|.+.|++.-.++. ...|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45677777766655421 2335667777766554322 122333333336789999999997666554 34688999987
Q ss_pred CCC
Q psy11037 122 DRV 124 (129)
Q Consensus 122 ~~~ 124 (129)
+..
T Consensus 87 ~~~ 89 (156)
T cd08380 87 SEP 89 (156)
T ss_pred ecC
Confidence 644
No 137
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.66 E-value=0.16 Score=32.78 Aligned_cols=66 Identities=21% Similarity=0.393 Sum_probs=48.0
Q ss_pred eCCCCEEEEEEEEEeCCCCCCCC--CCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCC
Q psy11037 40 QPAANRFTIVVLKARNLPKMDVT--GLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN 108 (129)
Q Consensus 40 ~~~~~~L~v~i~~a~~l~~~~~~--~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~ 108 (129)
++....|++.+..|+-+...... +..+..+.+++-..+ ++++++.+..+.+|.|+|.|.|++....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~ 72 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG---QRFRSKPVPCACEPDFNEEFLFELPRDS 72 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC---ceEecCCcccccCCCCCCcEEEEecccc
Confidence 34566788888888766544221 445566666664433 5788999999999999999999987764
No 138
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.38 E-value=0.34 Score=31.37 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEEeCCeEee-EEeeeeccCCCCCccCcEEEEEecCCCCC-ccEEEEEEEEcCCC
Q psy11037 63 GLADPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRV 124 (129)
Q Consensus 63 ~~~~pyv~~~l~~~~~~~~-~~~T~~~~~~~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d~~~~ 124 (129)
...+-||.+.+-.++.... ...|..+.-+..+.|||-+.|+|.-.++. ...|.|+||+.+..
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~ 91 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT 91 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC
Confidence 3467788887765544222 22444454456688999999998877764 34689999997643
No 139
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.94 E-value=0.22 Score=33.21 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=33.4
Q ss_pred EEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 82 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 82 ~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
..++-+...+-+|.|+|++.+.++.+.....-|.|+.++..
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 45677778888999999999999988877767888877754
No 140
>KOG1452|consensus
Probab=93.86 E-value=0.34 Score=34.86 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCCCEEEEEEEEEeCCCCCCC--CCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEE
Q psy11037 41 PAANRFTIVVLKARNLPKMDV--TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 118 (129)
Q Consensus 41 ~~~~~L~v~i~~a~~l~~~~~--~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v 118 (129)
...+.|.+.+..+++|.-... .-..+.|+.+... +..+.+|.+......-.|.|+|..++-..+ .+.+-|
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d----rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~----vl~~lv 119 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD----RQHPARTRVRSSGPGFAWAEDFKHDVVNIE----VLHYLV 119 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeec----ccCccccccccCCCCccchhhceeecccce----eeeEEE
Confidence 356889999999999964432 2234566666542 334555655544444578898888765433 466778
Q ss_pred EEcCCCCCC
Q psy11037 119 LDWDRVTKN 127 (129)
Q Consensus 119 ~d~~~~~~~ 127 (129)
|.|+...++
T Consensus 120 ySW~pq~RH 128 (442)
T KOG1452|consen 120 YSWPPQRRH 128 (442)
T ss_pred eecCchhhc
Confidence 888765544
No 141
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.62 E-value=0.81 Score=29.87 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeE-Eeeeec----cCCCCCccCcEEEEEecCCCCC-ccEEEE
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAK-KKTHVK----KRTLNPVYNESFVFEVPADNLD-SVSLEL 116 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~-~~T~~~----~~~~~P~~~e~~~f~i~~~~~~-~~~l~i 116 (129)
...+.|.|..+.+++..-.....+-|+.+.+-.++..... ..|... .....+.|||-+.|++.-.++. ...|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3567888888888876654455778888877665543321 123211 1123567999999998666653 346889
Q ss_pred EEEEcCCC
Q psy11037 117 LLLDWDRV 124 (129)
Q Consensus 117 ~v~d~~~~ 124 (129)
++|+....
T Consensus 87 tl~~~~~~ 94 (171)
T cd04012 87 TLYGTTSS 94 (171)
T ss_pred EEEEEecC
Confidence 99987643
No 142
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.43 E-value=0.83 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=33.9
Q ss_pred eEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 81 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 81 ~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
...++-+...+-+|.|+|++.+.++.+...+.-|.|++++..
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 345666767788999999999999988877777888887754
No 143
>KOG1327|consensus
Probab=91.26 E-value=0.38 Score=36.85 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=34.5
Q ss_pred EEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCCC
Q psy11037 82 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124 (129)
Q Consensus 82 ~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~~ 124 (129)
..+|.++...++|.|.+.|..+...+..+ .++|.+++.+..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ--~l~~~~~~~~~~ 82 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQ--LLRFEVYDIDSR 82 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeee--eEEEEEeecCCc
Confidence 34788999999999999998888887776 788999987754
No 144
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.95 E-value=1.3 Score=27.81 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=36.9
Q ss_pred cEEEEEEEeCCeEee--EEeeeeccCC-CCCccCcEEEEEecCCCCC-ccEEEEEEEEcCCC
Q psy11037 67 PYVKVYLLYKGQRVA--KKKTHVKKRT-LNPVYNESFVFEVPADNLD-SVSLELLLLDWDRV 124 (129)
Q Consensus 67 pyv~~~l~~~~~~~~--~~~T~~~~~~-~~P~~~e~~~f~i~~~~~~-~~~l~i~v~d~~~~ 124 (129)
.||.+.+-.++.... ...|....-+ ..+.|+|.+.|++.-.++. ...|.|+||+.+..
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~ 65 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK 65 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC
Confidence 456666655554444 2255555444 7899999999998666543 34688999987654
No 145
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.87 E-value=1 Score=29.72 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=26.9
Q ss_pred eEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 81 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 81 ~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
....|.+..++-+|.|+|++.++++.+.....-|.|++++...
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~ 101 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSC 101 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecc
Confidence 3445667777889999999999998887666778999998654
No 146
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=83.38 E-value=7.2 Score=23.03 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 92 LNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 92 ~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
.+..|++.|.+++.... .|+|.||-.|.
T Consensus 31 s~q~WDQ~Fti~LdRsR----ELEI~VywrD~ 58 (98)
T cd08687 31 SNQAWDQSFTLELERSR----ELEIAVYWRDW 58 (98)
T ss_pred ccccccceeEEEeeccc----EEEEEEEEecc
Confidence 47899999999987543 78899987663
No 147
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=81.82 E-value=6.8 Score=25.97 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=33.8
Q ss_pred eEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 81 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 81 ~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
....|.+...+-+|.|.+++-.+++.......-|.|+.++.+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 3456677777889999999999988877666678899988553
No 148
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=80.07 E-value=7.6 Score=25.87 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=33.8
Q ss_pred eEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcC
Q psy11037 81 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 122 (129)
Q Consensus 81 ~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~ 122 (129)
....|.+...+-+|.|.|++-+.++.......-|.|+.++..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 345677777788999999999998887766667889999865
No 149
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=78.06 E-value=16 Score=23.75 Aligned_cols=54 Identities=15% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 65 ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 65 ~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
..-|+++.+ +++...+.+.+.......-.|++.|.+.+.. ... .|.++||....
T Consensus 37 ~~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pe--si~l~i~E~~~ 90 (168)
T PF15625_consen 37 TRYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPE--SIKLEIYEKSG 90 (168)
T ss_pred eeEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCC--EEEEEEEEccC
Confidence 344555555 4544444444444445556778888888754 222 68888998765
No 150
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=76.83 E-value=9 Score=25.09 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=27.6
Q ss_pred eccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 87 ~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
++...-+|.|++++...++.......-|.|++++...
T Consensus 58 v~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~ 94 (178)
T cd08679 58 VVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS 94 (178)
T ss_pred EEEcCCCCCCceeEEEecCCccCCCeEEEEEEEcccc
Confidence 3333479999999999987665455678899988653
No 151
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=76.51 E-value=16 Score=26.76 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=48.5
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCC-----CCCccEEEEEEEE
Q psy11037 46 FTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-----NLDSVSLELLLLD 120 (129)
Q Consensus 46 L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~-----~~~~~~l~i~v~d 120 (129)
+.|.|++|++++... ...-.+...+ ++ ....|..+..+-.|.|+..+.+.+... ...+..|++++|.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~--ng---~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF--NG---ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe--CC---ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence 578899999987651 1223344444 33 355677778888999999999986544 3456789999999
Q ss_pred cC
Q psy11037 121 WD 122 (129)
Q Consensus 121 ~~ 122 (129)
.|
T Consensus 74 ~~ 75 (340)
T PF12416_consen 74 VD 75 (340)
T ss_pred ec
Confidence 87
No 152
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=59.05 E-value=47 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCCccCcEEEEEecCCCCCc-cEEEEEEEEcCCCCCCC
Q psy11037 92 LNPVYNESFVFEVPADNLDS-VSLELLLLDWDRVTKNE 128 (129)
Q Consensus 92 ~~P~~~e~~~f~i~~~~~~~-~~l~i~v~d~~~~~~~d 128 (129)
-.-.|+..|.+.+......+ ..|.|+||..|..+++.
T Consensus 55 ~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~ 92 (168)
T PF07162_consen 55 DVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDR 92 (168)
T ss_pred CceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeE
Confidence 34578888877765555433 46899999999988764
No 153
>KOG0694|consensus
Probab=52.34 E-value=18 Score=29.05 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecCCCCCccEEEEEEEEcCC
Q psy11037 64 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123 (129)
Q Consensus 64 ~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~~~~~~~~l~i~v~d~~~ 123 (129)
..+||+-+.+... ....+.....+..|.|+++|..++.... .+.|.|+....
T Consensus 27 al~~y~~v~vk~~----~~~~~~~~~~~~~~~~~~~F~~~v~~~~----~~~i~v~~~~~ 78 (694)
T KOG0694|consen 27 ALQPYLAVELKVK----QGAENMTKVELRIPELRETFHVEVVAGG----AKNIIVLLKSP 78 (694)
T ss_pred hhhhhheecccee----ecccccCCCCCCCchhhhheeeeeecCC----ceEEEEEecCC
Confidence 3577777766311 1123334567889999999999866543 56677776543
No 154
>KOG4269|consensus
Probab=46.18 E-value=10 Score=31.45 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=41.8
Q ss_pred CEEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeeeccCCCCCccCcEEEEEecC
Q psy11037 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106 (129)
Q Consensus 44 ~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~~~~~~~P~~~e~~~f~i~~ 106 (129)
+-+++.+..+..+..- ...||.......+....+.+|.++.++..|.|++.++.++..
T Consensus 759 gflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 759 GFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE 816 (1112)
T ss_pred cceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh
Confidence 5677888877666322 456777666544555567789999999999999988777543
No 155
>KOG4028|consensus
Probab=45.43 E-value=30 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=13.9
Q ss_pred EEEEEEEEcCCCCCCC
Q psy11037 113 SLELLLLDWDRVTKNE 128 (129)
Q Consensus 113 ~l~i~v~d~~~~~~~d 128 (129)
.|.|.||++|.+++.+
T Consensus 75 rl~~qiw~~dnfgr~e 90 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCE 90 (175)
T ss_pred eeeeeeeecCccccee
Confidence 5889999999998765
No 156
>KOG0904|consensus
Probab=29.48 E-value=2.6e+02 Score=23.81 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=41.5
Q ss_pred CCEEEEEEEEEeCCCCCCCCCCCCcEEEEEEE-eCCeEee-E-EeeeeccCCCCCccCcEEEEEecCCCCCc-cEEEEEE
Q psy11037 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVA-K-KKTHVKKRTLNPVYNESFVFEVPADNLDS-VSLELLL 118 (129)
Q Consensus 43 ~~~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~-~~~~~~~-~-~~T~~~~~~~~P~~~e~~~f~i~~~~~~~-~~l~i~v 118 (129)
.+.+++.++.+.+... ....|-+|.+... ..|...- + ..|.-+.....|.||+.+.|+|.=.++.+ ..|-|.|
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 3567888887755432 2334555555532 2233222 2 23333333668999999999987666542 2344445
Q ss_pred EE
Q psy11037 119 LD 120 (129)
Q Consensus 119 ~d 120 (129)
|.
T Consensus 419 ~~ 420 (1076)
T KOG0904|consen 419 YA 420 (1076)
T ss_pred eE
Confidence 54
No 157
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=27.58 E-value=62 Score=19.47 Aligned_cols=39 Identities=33% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEeeeeccCCCCCccCcEEEEEecCCC-----CCccEEEEEEEEc
Q psy11037 82 KKKTHVKKRTLNPVYNESFVFEVPADN-----LDSVSLELLLLDW 121 (129)
Q Consensus 82 ~~~T~~~~~~~~P~~~e~~~f~i~~~~-----~~~~~l~i~v~d~ 121 (129)
.+.|.++. +.+|.++-+..|.+...+ +....+.++++..
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa 55 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQA 55 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEee
Confidence 45677665 889999999999988775 3345677888764
No 158
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=23.24 E-value=1.9e+02 Score=17.69 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=37.3
Q ss_pred EEEEEEEEEeCCCCCCCCCCCCcEEEEEEEeCCeEeeEEeeee-ccCCCCCccCcEEEEEecCC------CCCccEEEEE
Q psy11037 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHV-KKRTLNPVYNESFVFEVPAD------NLDSVSLELL 117 (129)
Q Consensus 45 ~L~v~i~~a~~l~~~~~~~~~~pyv~~~l~~~~~~~~~~~T~~-~~~~~~P~~~e~~~f~i~~~------~~~~~~l~i~ 117 (129)
.+.+.+.+..+++.. ....+|++... ........|.. ...+-.-.|++.|.+.+... .+....+.|.
T Consensus 8 ~~~l~i~~l~~~p~~----~~~v~v~wkr~--~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----NGKVFVKWKRG--DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEeECcCCC----CCEEEEEEEEC--CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 456677777666541 12334444331 11100222222 22344568999998874321 1445678888
Q ss_pred EEEcC
Q psy11037 118 LLDWD 122 (129)
Q Consensus 118 v~d~~ 122 (129)
|+...
T Consensus 82 v~~~~ 86 (143)
T PF10358_consen 82 VFEVD 86 (143)
T ss_pred EEEec
Confidence 88864
No 159
>PF07379 DUF1494: Protein of unknown function (DUF1494); InterPro: IPR009968 This family consists of several bacterial proteins of around 175 residues in length. Members of this family seem to be found exclusively in Chlamydia species. The function of this family is unknown.
Probab=22.97 E-value=2.3e+02 Score=18.57 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCCcceEEeeecccccccCcceEEEEEEEEeCCCCEEEEEEEEEeCCCC
Q psy11037 10 FQNQSFHNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPK 58 (129)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~L~v~i~~a~~l~~ 58 (129)
..|...+..=|.=+..++.-.|.+.-++.|++..+.|...+..-++-..
T Consensus 68 ~pg~~fslvFDrGVy~Dp~lAGeV~G~L~yd~~~~RL~L~i~s~r~~~~ 116 (170)
T PF07379_consen 68 KPGLLFSLVFDRGVYRDPELAGEVQGSLHYDKQDGRLELQIRSLRNESK 116 (170)
T ss_pred CCCcEEEEEeccccccChhhhhheeeEEEEcCCCCEEEEEEeeccchhh
Confidence 3333333333333444556678888888899998998888776655433
No 160
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=20.86 E-value=1.7e+02 Score=16.13 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=17.3
Q ss_pred ccccccCcceEEEEEEEEeCCCCEEEEEEEE
Q psy11037 22 SSEIKSQGRGEILLSLCWQPAANRFTIVVLK 52 (129)
Q Consensus 22 ~~~~~~~~~G~l~~~~~~~~~~~~L~v~i~~ 52 (129)
...+.....|.|.+.+.+.. +.+.+.+..
T Consensus 16 ~l~L~p~~LG~v~v~l~~~~--~~l~v~~~~ 44 (85)
T PF02120_consen 16 SLQLDPPELGSVEVKLRLQG--GNLSVQFTA 44 (85)
T ss_dssp EE--SSGGG--EEEEEEEET--TEEEEEEE-
T ss_pred EEEEcccccCcEEEEEEEeC--CEEEEEEEE
Confidence 45667788899999998854 466666654
No 161
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=20.55 E-value=1e+02 Score=17.19 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=11.3
Q ss_pred EEEEEEEEcCCCCCCC
Q psy11037 113 SLELLLLDWDRVTKNE 128 (129)
Q Consensus 113 ~l~i~v~d~~~~~~~d 128 (129)
...|++|+.|.+..||
T Consensus 13 ~~~V~L~e~d~~~~Dd 28 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDD 28 (80)
T ss_pred CCEEEEEECCCCCCCc
Confidence 3567899988765555
No 162
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=20.43 E-value=62 Score=19.31 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCccCcEEEEEecCCCC---CccEEEEEEEEc-CCC
Q psy11037 93 NPVYNESFVFEVPADNL---DSVSLELLLLDW-DRV 124 (129)
Q Consensus 93 ~P~~~e~~~f~i~~~~~---~~~~l~i~v~d~-~~~ 124 (129)
=..|.+++...+..+.+ -...|.+++||. |++
T Consensus 51 Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtkdKv 86 (99)
T PF15084_consen 51 WVSWTHTFNINVTKELLKKLYFHKITLKIWDTKDKV 86 (99)
T ss_pred EEEEEEEEEeccCHHHHHHHHcCeEEEEEEcchhhh
Confidence 36888888888776643 235699999994 344
Done!