RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11037
(129 letters)
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 163 bits (414), Expect = 4e-53
Identities = 58/102 (56%), Positives = 81/102 (79%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
GRGE+L+SLC+Q N T+VVLKAR+LPK DV+GL+DPYVKV L + +R++KKKTH
Sbjct: 13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTH 72
Query: 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
VKK T N V+NE FVF++P ++L+ +S+E L+LD +R ++NE
Sbjct: 73 VKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNE 114
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 161 bits (410), Expect = 2e-52
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 5 GSSSSFQNQSFHNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGL 64
GS+ + + + + RG+IL+SL + + +++ +L MD G
Sbjct: 1 GSARGM---ALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGY 57
Query: 65 ADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 124
+DP+VK++L + AK KT +KK+TLNP +NE F +++ +L SL++ + D+D
Sbjct: 58 SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 125 TKNE 128
N+
Sbjct: 118 KSND 121
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 160 bits (407), Expect = 3e-52
Identities = 50/99 (50%), Positives = 76/99 (76%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RGE+LLSLC+ P+AN + ++KARNL MD+ G +DPYVKV+L+YK +RV KKKT KK
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 90 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
R LNP++NESF F++P + L ++ + ++D D++++N+
Sbjct: 62 RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRND 100
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 156 bits (397), Expect = 2e-50
Identities = 51/103 (49%), Positives = 75/103 (72%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 85
+ G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT
Sbjct: 7 ILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKT 66
Query: 86 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+KK TLNP YNESF FEVP + + V + + +LD+D++ KN+
Sbjct: 67 TIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKND 109
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 148 bits (375), Expect = 2e-45
Identities = 45/103 (43%), Positives = 71/103 (68%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 85
+ GE+ SLC+ P A T+ ++KA NL MD+TG +DPYVK L+ +G+R+ K+KT
Sbjct: 134 EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKT 193
Query: 86 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+KK TLNP YNE+ VF+V +++++V L + ++D+D + NE
Sbjct: 194 SIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNE 236
Score = 119 bits (300), Expect = 3e-34
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
G I +L + +++ + +L+A +LP D G +DPYVK+YLL ++ K +T
Sbjct: 3 GAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQTK 60
Query: 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
V ++TLNP++NE+F F VP L L + D+DR ++++
Sbjct: 61 VHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHD 102
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 147 bits (372), Expect = 3e-45
Identities = 51/118 (43%), Positives = 78/118 (66%)
Query: 11 QNQSFHNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVK 70
+ + + + G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK
Sbjct: 117 HVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVK 176
Query: 71 VYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
++L+ G+R+ KKKT +KK TLNP YNESF FEVP + + V + + +LD+D++ KN+
Sbjct: 177 IHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKND 234
Score = 122 bits (309), Expect = 9e-36
Identities = 38/102 (37%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
S+ G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL ++ K +T
Sbjct: 2 SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETK 59
Query: 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
V ++TLNPV+NE F F+VP L +L + + D+DR +K++
Sbjct: 60 VHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHD 101
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 133 bits (336), Expect = 2e-41
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
++ RG I L + + + V A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 1 TEKRGRIYLKA--EVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+ TLNP +NESF F++ + D L + + DWDR T+N+
Sbjct: 59 TIRSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRND 99
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 132 bits (333), Expect = 6e-41
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T
Sbjct: 4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 63
Query: 87 VKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
K+TL P +N++F++ V LE+ L D RV + E
Sbjct: 64 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEE 106
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 130 bits (330), Expect = 1e-40
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T K
Sbjct: 4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 90 RTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
+TL P +N++F++ V LE+ L D RV + E
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEE 103
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 131 bits (331), Expect = 1e-40
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKTHVK 88
G I SL ++ + V + L D ++PYVK YLL R K+KT +K
Sbjct: 9 TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 89 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+ T+NP+Y+E+ +E+P L +L+ + R +N
Sbjct: 69 RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNT 108
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 130 bits (329), Expect = 2e-40
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 22 SSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 81
SS G+I L++ N+ +VV RNL G +DPYV++YLL +R
Sbjct: 2 SSGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSG 60
Query: 82 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
++KTHV K+TLNPV+++SF F V + +L++ + + +
Sbjct: 61 RRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKD 107
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 130 bits (329), Expect = 2e-40
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
+ RG I + +VV A+NL MD GL+DPYVK+ L+ + +K+KT
Sbjct: 16 MERRGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
K +LNP +NE+F F++ + D L + + DWD ++N+
Sbjct: 74 TIKCSLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRND 114
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 130 bits (328), Expect = 4e-40
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 4 SGSSSSFQNQSFHNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTG 63
S S + + + + G++ SL + N+ + +++A LP +D+ G
Sbjct: 2 SPGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG 61
Query: 64 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123
+DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR
Sbjct: 62 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119
Query: 124 VTKNE 128
+K++
Sbjct: 120 FSKHD 124
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 127 bits (321), Expect = 4e-39
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 16 HNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLY 75
+ S ++ G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL
Sbjct: 8 GGGGILDSMVEK--LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP 65
Query: 76 KGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR +K++
Sbjct: 66 DKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHD 116
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 126 bits (319), Expect = 9e-39
Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
Query: 3 TSGSSSSFQNQSFHNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT 62
+SGSS + + + S E ++ G I ++L + +F I++++ NL +
Sbjct: 2 SSGSSGVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQ 61
Query: 63 GLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 121
++V +L +T + V+NE F + L +L + +
Sbjct: 62 QDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121
Query: 122 DRVTKNE 128
DR E
Sbjct: 122 DRSHLEE 128
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 125 bits (315), Expect = 3e-38
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 17 NSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK 76
+ + ++ G + SL + + +++A+ L MD GLADPYVK++LL
Sbjct: 2 SEANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPG 61
Query: 77 GQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
+ K +T + T NPV+NE+ + + +++ +L + + D D+ NE
Sbjct: 62 ASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNE 114
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 124 bits (313), Expect = 8e-38
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 20 DISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR 79
+ +G L L + +++ + L G DPYVK+ L+ + R
Sbjct: 3 HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSR 61
Query: 80 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKN 127
+ +KT +P ++E F F V ++ L + + + ++
Sbjct: 62 LRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQ 108
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 121 bits (306), Expect = 7e-37
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 20 DISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQR 79
S + G I S+ + + T+ ++KA+ LP D +G +DP+VK+YLL +
Sbjct: 2 SSGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--PDK 59
Query: 80 VAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
K +T VK++ LNP +NE+F+FE P + + L L +LD+DR ++N+
Sbjct: 60 KHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRND 109
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 117 bits (295), Expect = 2e-35
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 85
G G + LS+ ++ I+V+ ++L D +PYVK YLL + +K+KT
Sbjct: 4 HHHGSGAVKLSVSYRN--GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKT 60
Query: 86 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
+ ++T NP +NE V+ + L L+L +L + + +N
Sbjct: 61 KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENF 104
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 117 bits (294), Expect = 5e-35
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL---------YKGQRV 80
GEI L + + I +L+ARNL D G +DP+VKVYLL
Sbjct: 6 TGEIQLQINYDL--GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 81 AKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
K++T +++LNP +N++ +++ + + L +LE+ + D+DR + N+
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND 112
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 117 bits (294), Expect = 1e-34
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVT-GLADPYVKVYLLYKGQRVAKKKT 85
+ G+I + + + + + V++AR+L + + PYVKVYLL G +AKKKT
Sbjct: 15 TPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKT 72
Query: 86 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLL-LDWDRVTKNE 128
+ ++TL+P+Y +S VF+ L++++ D+ R+
Sbjct: 73 RIARKTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRMDHKC 113
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 115 bits (291), Expect = 1e-34
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 22 SSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA 81
S ++ L + + L+A + G D YV+ + + V
Sbjct: 4 GSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSV- 59
Query: 82 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+ +T +KKR L+ + E V + + L + +L L L DR +++
Sbjct: 60 EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHS 106
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 115 bits (291), Expect = 2e-34
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 22 SSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKM-------DVTGLADPYVKVYLL 74
S G + S + N T+ V++AR+LP ++PYVK+ LL
Sbjct: 4 GSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63
Query: 75 YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+ K+T VK++T PV+ E + FE+P +L L ++D+D+ +++
Sbjct: 64 PDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 115
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 114 bits (288), Expect = 3e-34
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGL-ADPYVKVYLLYKGQRVAKKKT 85
S G G + SL + F + + +AR LP MD + +DPY+K+ +L + + K KT
Sbjct: 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKT 62
Query: 86 HVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
V ++TL+P ++E+F F +P + ++L +L +DR ++++
Sbjct: 63 RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDD 106
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 104 bits (260), Expect = 7e-30
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 31 GEILLSLCWQPAANRF-TIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVK 88
+ L +R + V+ L K D+ G +DPYV+V L + +T
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 89 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
K++LNP +NE +F V L + D +R+T+++
Sbjct: 66 KKSLNPKWNEEILFRVHPQQH---RLLFEVFDENRLTRDD 102
Score = 27.4 bits (61), Expect = 1.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 26 KSQGRGEILLSLCWQP 41
KS+ +G + L + + P
Sbjct: 138 KSRVKGYLRLKMTYLP 153
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 100 bits (250), Expect = 2e-28
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 41 PAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF 100
+ + VL A+NL K D L DP+ K+ + GQ T K TL+P +N+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHY 58
Query: 101 VFEVPADNLDSVSLELLLLDWDRVTKNE 128
V + S+ + + + ++ K +
Sbjct: 59 DLYVG----KTDSITISVWNHKKIHKKQ 82
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 99.6 bits (248), Expect = 9e-28
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 39 WQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYN 97
+ V+ L K D+ G +DPYV+V L + +T K++LNP +N
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 98 ESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
E +F V + + D +R+T+++
Sbjct: 63 EEILFRVLPQRH---RILFEVFDENRLTRDD 90
Score = 38.7 bits (90), Expect = 1e-04
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPK 58
KS+ +G + L + + P +A L
Sbjct: 126 KSRVKGYLRLKMTYLPKNGSEDENADQAEELEP 158
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 96.3 bits (240), Expect = 6e-27
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
++V A N+PK G DP V V + KKKT LNPV+NE F++
Sbjct: 10 RVIVESASNIPKTK-FGKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRG 63
Query: 107 DNLD-SVSLELLLLDWDRVTKNE 128
LD S SL +++ D++ + +N+
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNK 86
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 91.6 bits (228), Expect = 4e-25
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
+ VLKA +L D +G +DP+ + L + +TH + LNP +N+ F F +
Sbjct: 16 QVKVLKAADLLAADFSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIK- 69
Query: 107 DNLDSVSLELLLLDWDRVTKNE 128
++ V LE+ + D D +
Sbjct: 70 -DIHDV-LEVTVFDEDGDKPPD 89
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 87.4 bits (217), Expect = 1e-23
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 43 ANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNES 99
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE+
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNET 59
Query: 100 FVFEVPADNLDSVSLELLLLDWDRVT 125
F F + LE+ L+D + V
Sbjct: 60 FEFILD--PNQENVLEITLMDANYVM 83
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 85.2 bits (211), Expect = 2e-22
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
+I V+ A+ L D TG +DPYV V + KK+T LNPV+ E+F FE
Sbjct: 20 SITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECH- 73
Query: 107 DNLDSVSLELLLLDWDRVTKN 127
S +++ +LD D K+
Sbjct: 74 --NSSDRIKVRVLDEDDDIKS 92
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 84.7 bits (210), Expect = 2e-22
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
+V++ A+ L D DPYV++ Q +K + P +NE+F+F V
Sbjct: 13 EVVLVSAKGLEDADFLNNMDPYVQLTCR--TQD--QKSNVAEGMGTTPEWNETFIFTVSE 68
Query: 107 DNLDSVSLELLLLDWDRVTKNE 128
+ L+ + D D T+++
Sbjct: 69 GTTE---LKAKIFDKDVGTEDD 87
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 81.1 bits (200), Expect = 1e-20
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 4 SGSSSSFQNQSFHNSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTG 63
SS +N F +D S++ S G + L I V+ A+
Sbjct: 5 HHHSSGRENLYFQGMSDSGSQLGSMGSLTMKSQL---------QITVISAKLKENKKNWF 55
Query: 64 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123
PYV+V + GQ KKT T +P + + V L +
Sbjct: 56 GPSPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVT----PVSKLHFRVWSHQT 106
Query: 124 VTKNE 128
+ +
Sbjct: 107 LKSDV 111
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 76.5 bits (188), Expect = 5e-19
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 22 SSEIKSQGRGEILLSLCWQPAANRFT----IVVLKARNLPKMDV----------TGLADP 67
SS ++ +F + + +A L L DP
Sbjct: 3 SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP 62
Query: 68 YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKN 127
Y+ V + RV + T K++T P YNE F V D LEL + + +
Sbjct: 63 YLTVSV--DQVRVGQ--TSTKQKTNKPTYNEEFCANVT----DGGHLELAVFHETPLGYD 114
Query: 128 E 128
Sbjct: 115 H 115
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 80.4 bits (197), Expect = 6e-19
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 40 QPAANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 96
+++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVW 71
Query: 97 NESFVFEVPADNLDSVSLELLLLDWDRVT 125
NE+F F + + LE+ L+D + V
Sbjct: 72 NETFEFILDPN--QENVLEITLMDANYVM 98
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 73.7 bits (181), Expect = 5e-18
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 48 IVVLKARNLPKMDV-----------TGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY 96
I + +A +L T L DPY+ + + R+ +T K++T +P +
Sbjct: 10 IKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRI--GQTATKQKTNSPAW 65
Query: 97 NESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
++ FV +V + +EL + + ++
Sbjct: 66 HDEFVTDVC----NGRKIELAVFHDAPIGYDD 93
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 52.6 bits (125), Expect = 3e-09
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 103
+ +A +L T D Y+KV+ + + +T V NP + + FE
Sbjct: 394 AHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQ-----EFRTGVVWNNNNPRWTDKMDFE 447
Query: 104 VPADNLDSVSLELLLLDWDRVTKNE 128
+ L + + D D ++
Sbjct: 448 NVLLSTGGP-LRVQVWDADYGWDDD 471
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 46.1 bits (109), Expect = 2e-07
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 103
+ + V KA+ + + YV + + K T + R P + + F+FE
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMFE 55
Query: 104 VPADNLDSVSLELLLLDWDR 123
+ + + L L + W++
Sbjct: 56 I-----NRLDLGLTVEVWNK 70
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 43.8 bits (103), Expect = 1e-06
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFE 103
+ + L G AD KV R + V + + +E+F +
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWP 71
Query: 104 VPADNLDSVSLELLLLDWDRVTKNE 128
V + + LE+ + ++ +V N+
Sbjct: 72 VASSIDRNEVLEIQIFNYSKVFSNK 96
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 44.1 bits (103), Expect = 3e-06
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 43 ANRFTIVVLKARNLPKMD--VTGLADPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNES 99
R + ++ + LPK++ + DP V V + G+ ++T V NP ++
Sbjct: 496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 555
Query: 100 FVFEVPADNLDSVSLELLLLDWDRVTKNE 128
F FEV +L + ++ D+D +KN+
Sbjct: 556 FEFEVTVPDL--ALVRFMVEDYDSSSKND 582
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 42.7 bits (100), Expect = 4e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 23/97 (23%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH 86
S G G IL LC + V KA+ + + YV + K Q V + T
Sbjct: 6 SGGGGGILSLLC---------VGVKKAKFDGAQEKF---NTYVTL----KVQNV--ESTT 47
Query: 87 VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 123
+ R P + + F+FE+ + + L L + W++
Sbjct: 48 IAVRGSQPSWEQDFMFEI-----NRLDLGLTVEVWNK 79
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 41.1 bits (95), Expect = 3e-05
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVK-KRTLNPVYNESFVF 102
N + +++AR LP Y ++ L A+ + + + E F F
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 103 EVPADNLDSVSLELLLLDWDRVTKNE 128
L D D+ K +
Sbjct: 64 NNLPA--VRALRLHLYRDSDKKRKKD 87
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 32.7 bits (74), Expect = 0.012
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 64 LADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 120
+PY V + + + KK T+ P ++ +F + +++++
Sbjct: 31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI----NKGRVMQIIVKG 83
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 33.4 bits (75), Expect = 0.013
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKK---THVKKRTLNPVYNESFV 101
I ++ A+ L + YV+V + +KK ++ ++P Y+E
Sbjct: 651 TIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVF 706
Query: 102 FEVPADNLDSVSLELLLLDWD 122
D + +++ + +
Sbjct: 707 VFKKVVLPDLAVVRIIVSEEN 727
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 33.0 bits (74), Expect = 0.018
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 45 RFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTH---VKKRTLNPVYNESFV 101
+I V+ + L + V YV+V L ++ ++NPV+ E
Sbjct: 679 TLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 734
Query: 102 FEVPADNLDSVSLELLLLD 120
+ SL + +++
Sbjct: 735 VFEKILMPELASLRVAVME 753
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 32.0 bits (72), Expect = 0.019
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 48 IVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 107
I P+ V + K KK T+ P + +F +
Sbjct: 10 IAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG 69
Query: 108 NLDSVSLELLLLD 120
++++L+
Sbjct: 70 R----VIQIVLMR 78
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 30.4 bits (67), Expect = 0.18
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 43 ANRFTIVVLKARNLPKMDVTGLADPYVKVYLL-YKGQRVAKKKTHVKKR-TLNPVYNES- 99
AN + V+ + L V YV+V + K +T + + NPV++E
Sbjct: 724 ANALRVKVISGQFLSDRKV----GIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEP 779
Query: 100 FVFE 103
F F
Sbjct: 780 FDFP 783
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1,
predicted acetamidase/formamidase,
acetamidase/formamidase family; 1.58A {Methylobacillus
flagellatus KT}
Length = 484
Score = 26.6 bits (57), Expect = 2.6
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVK 70
SQG E+ + F ++ K +LP + L P ++
Sbjct: 346 SQGDSEMCGTAIECSLTGTFQFILHKKADLPGTPLADLQYPLLE 389
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange,
membrane, transport protein; HET: MSE; 1.90A {Vibrio
cholerae} PDB: 3mgl_A*
Length = 130
Score = 25.4 bits (56), Expect = 4.7
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 48 IVVLKARNLPKMDVTGL 64
I++L+ + +P MD+TG+
Sbjct: 51 ILILRLKWVPFMDITGI 67
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain,
anion exchange, membrane, transport protein; HET: MSE;
1.60A {Wolinella succinogenes} PDB: 3oir_A*
Length = 135
Score = 25.0 bits (55), Expect = 5.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 48 IVVLKARNLPKMDVTGL 64
+ +L+ R +P +D TG+
Sbjct: 54 VFILRMRRVPVIDATGM 70
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB),
bicarbonate transport, anion T membrane protein, STAS
domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Length = 118
Score = 25.0 bits (55), Expect = 5.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 48 IVVLKARNLPKMDVTGL 64
IV+LK +P +D GL
Sbjct: 48 IVILKWDAVPVLDAGGL 64
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 25.3 bits (56), Expect = 6.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 44 NRFTIVVLKARNLPKMDVTGLAD 66
F V+ K R +PK +V +AD
Sbjct: 170 EGFVDVISKGRGMPKAEVKKIAD 192
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 24.9 bits (55), Expect = 8.6
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 70 KVYL-LYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 104
KVY + G VA K E+ E
Sbjct: 22 KVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEA 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.373
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,792,178
Number of extensions: 93251
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 58
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)