RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11037
(129 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 115 bits (288), Expect = 9e-35
Identities = 57/99 (57%), Positives = 80/99 (80%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RGE+L+SLC+Q N T+VVLKAR+LPK DV+GL+DPYVKV L + +R++KKKTHVKK
Sbjct: 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 60
Query: 90 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
T N V+NE FVF++P ++L+ +S+E L+LD +R ++NE
Sbjct: 61 CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNE 99
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 103 bits (257), Expect = 4e-30
Identities = 34/99 (34%), Positives = 59/99 (59%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RG+IL+SL + + +++ +L MD G +DP+VK++L + AK KT +KK
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 90 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+TLNP +NE F +++ +L SL++ + D+D N+
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSND 99
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 98.2 bits (244), Expect = 3e-28
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G++ + L + ++ + +L A++LP + +PYVK+Y L K++T K+
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 91 TLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
TL P +N++F++ V LE+ L D RV + E
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEE 99
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 98.7 bits (245), Expect = 5e-28
Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
G+I SL + P A + T+V+L+A+NL KMDV GL+DPYVK++L+ G+R+ KKKT +KK
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 90 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
TLNP YNESF FEVP + + V + + +LD+D++ KN+
Sbjct: 71 NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKND 109
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 96.8 bits (240), Expect = 2e-27
Identities = 45/103 (43%), Positives = 71/103 (68%)
Query: 26 KSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKT 85
+ GE+ SLC+ P A T+ ++KA NL MD+TG +DPYVK L+ +G+R+ K+KT
Sbjct: 2 EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKT 61
Query: 86 HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+KK TLNP YNE+ VF+V +++++V L + ++D+D + NE
Sbjct: 62 SIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNE 104
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 92.5 bits (229), Expect = 9e-26
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 17 NSTDISSEIKSQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYK 76
+ + + + G++ SL + N+ + +++A LP +D+ G +DPYVKV+LL
Sbjct: 7 SMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD 66
Query: 77 GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR +K++
Sbjct: 67 KKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHD 116
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 87.4 bits (216), Expect = 6e-24
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKK 89
RG I + +VV A+NL MD GL+DPYVK+ L+ + +K+KT K
Sbjct: 3 RGRIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60
Query: 90 RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+LNP +NE+F F++ + D L + + DWD ++N+
Sbjct: 61 CSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRND 98
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 81.7 bits (201), Expect = 1e-21
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 27 SQGRGEILLSLCWQPAANRFTIVVLKARNLPKMDVTG-LADPYVKVYLLYKGQRVAKKKT 85
S G G + SL + F + + +AR LP MD +DPY+K+ +L + + K KT
Sbjct: 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKT 62
Query: 86 HVKKRTLNPVYNESFV-FEVPADNLDSVSLELLLLDWDRVTKNE 128
V ++TL+P ++E+F + +P + ++L +L +DR ++++
Sbjct: 63 RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDD 106
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 79.2 bits (194), Expect = 8e-21
Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
G I +L + +++ + +L+A +LP D G +DPYVK+YLL ++ K +T V ++
Sbjct: 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHRK 62
Query: 91 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
TLNP++NE+F F VP L L + D+DR ++++
Sbjct: 63 TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHD 100
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 72.2 bits (176), Expect = 6e-18
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
Query: 30 RGEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVA-------- 81
GEI L + + I +L+ARNL D G +DP+VKVYLL +V
Sbjct: 6 TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 82 -KKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNE 128
K++T +++LNP +N++ +++ + + L +LE+ + D+DR + N+
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND 112
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 70.6 bits (172), Expect = 2e-17
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 39 WQPAANRFTIVVLKARNLPK--MDVTGLADPYVKVYLLYKGQRVAKKKTH-VKKRTLNPV 95
W+P R + ++ + LPK + + DP V V + G+ ++T + NP
Sbjct: 1 WRPE--RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPR 58
Query: 96 YNESFVFEVPADNLDSVSLELLLLDWDRVTKN 127
++ F FEV +L V + D+D +KN
Sbjct: 59 WDMEFEFEVTVPDLALVRFM--VEDYDSSSKN 88
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 66.1 bits (160), Expect = 1e-15
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 31 GEILLSLCWQPAANRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKR 90
++ L + + L+A + G D YV+ + + +T +KKR
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVA-NRTGSVEAQTALKKR 68
Query: 91 TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKN 127
L+ + E V + + L + +L L L DR +++
Sbjct: 69 QLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRH 105
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 61.3 bits (148), Expect = 1e-13
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
+V++ A+ L D DPYV++ + +K + P +NE+F+F V
Sbjct: 13 EVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSE 68
Query: 107 DNLDSVSLELLLLDWDRVTKNE 128
+ + D D T+++
Sbjct: 69 GTTELK---AKIFDKDVGTEDD 87
Score = 24.7 bits (53), Expect = 2.7
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 26 KSQGRGEILLSLCWQPAA 43
+ +GEI ++L ++P+
Sbjct: 115 DEEYKGEIWVALSFKPSG 132
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 60.5 bits (146), Expect = 1e-13
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 42 AANRFTIVVLKARNLPK---MDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 98
++++FT+VVL+A + K D+ DPYV++++ ++K+T +NPV+NE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNE 58
Query: 99 SFVFEVPADNLDSVSLELLLLDWDRV 124
+F F + + + + + L+D + V
Sbjct: 59 TFEFILDPNQENVLEIT--LMDANYV 82
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 54.0 bits (129), Expect = 4e-11
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 49 VVLKARNL-PKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD 107
+ + L + P+ V + K KK T+ P + +F +
Sbjct: 7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG 66
Query: 108 NLDSVSLELLLLDWDR 123
++++L+
Sbjct: 67 R----VIQIVLMRAAE 78
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 53.4 bits (128), Expect = 6e-11
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLL---YKGQRVAKKKTHVKKRTLNPVYNESFVFE 103
+I V+ + L + V YV+V L +R + K ++NPV+ E
Sbjct: 4 SITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59
Query: 104 VPADNLDSVSLELLLLDWDR 123
+ SL + +++
Sbjct: 60 EKILMPELASLRVAVMEEGN 79
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 49.0 bits (116), Expect = 4e-09
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
+ VLKA +L D +G +DP+ + + +TH + LNP +N+ F F +
Sbjct: 9 QVKVLKAADLLAADFSGKSDPFCLLE-----LGNDRLQTHTVYKNLNPEWNKVFTFPIKD 63
Query: 107 DNLDSVSLELLLLDWDRVTKNE 128
+ E+ + D D +
Sbjct: 64 IHDVL---EVTVFDEDGDKPPD 82
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 47.2 bits (111), Expect = 2e-08
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 19/93 (20%)
Query: 47 TIVVLKARNLPKMD-----------VTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPV 95
I + +A +L T L DPY+ +T K++T +P
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSPA 64
Query: 96 YNESFVFEVPADNLDSVSLELLLLDWDRVTKNE 128
+++ FV +V EL + + ++
Sbjct: 65 WHDEFVTDVCNGRKI----ELAVFHDAPIGYDD 93
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 47.1 bits (111), Expect = 3e-08
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 9/85 (10%)
Query: 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 103
++ I V+ A+ PYV+V + KKT T +P + +
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVI 60
Query: 104 VPADNLDSVSLELLLLDWDRVTKNE 128
V + + + +
Sbjct: 61 VTPVSKLHFR----VWSHQTLKSDV 81
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 40.9 bits (95), Expect = 5e-06
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 47 TIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 106
+ V KA+ + + YV + + K T + R P + + F+FE+
Sbjct: 5 CVGVKKAKFDGAQE---KFNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEINR 55
Query: 107 DNLDSVSLELLLLDWDRVTKN 127
+L + + + +
Sbjct: 56 LDLGLT---VEVWNKGLIWDT 73
>d1e7ua2 b.7.1.1 (A:351-524) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 174
Score = 26.9 bits (59), Expect = 0.62
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 44 NRFTIVVLKARNLPKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 103
+F + + P + T +V+ + Y Q + +++T K T ++N F
Sbjct: 9 RKFRVKIRGIDI-PVLPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFS 67
Query: 104 VPADNL 109
+ +L
Sbjct: 68 IKIKDL 73
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 24.4 bits (51), Expect = 6.3
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 57 PKMDVTGLADPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESF-----VFEVPADNLDS 111
+T D VK++ L G+ + T + V+ V V + N +
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN-GT 328
Query: 112 VSLELLLLDWD 122
+LL+LD+D
Sbjct: 329 EETKLLVLDFD 339
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 23.6 bits (51), Expect = 8.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 90 RTLNPVYNESFVFEVPADNLDSVSLEL 116
R LN YN + EVP + V L
Sbjct: 87 RVLNLHYNRNNHIEVPQNFRFVVESTL 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.373
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,594
Number of extensions: 17216
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 25
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.6 bits)