BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11040
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 39/185 (21%)
Query: 162 LGNELTPTSVKDEPT-VTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRY 219
LG LTPT VK+ PT +TWD +P YTL+++ D S K
Sbjct: 36 LGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRK------------------- 76
Query: 220 IFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPPLGTGLHR 279
+ + H+LVVN++G++I SG VL++Y+GSGPP GTGLHR
Sbjct: 77 ------------------DPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHR 118
Query: 280 YIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDNYVPI 339
Y++ V++Q G + EP SN S + R F +F KY+LG+PVAG Y A++D+YVP
Sbjct: 119 YVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178
Query: 340 LHRQF 344
L+ Q
Sbjct: 179 LYEQL 183
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F +F KY+LG+PVAG Y A++DDYVP L+ Q
Sbjct: 141 SGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQL 183
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 39/185 (21%)
Query: 162 LGNELTPTSVKDEPT-VTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRY 219
LG LTPT VK+ PT +TWD +P YTL+++ D S K
Sbjct: 36 LGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPSRK------------------- 76
Query: 220 IFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPPLGTGLHR 279
+ + H+LVVN++G++I SG VL++Y+GSGPP GTGLHR
Sbjct: 77 ------------------DPKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHR 118
Query: 280 YIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDNYVPI 339
Y++ V++Q G + EP SN S + R F +F KY+LG+PVAG Y A++D+YVP
Sbjct: 119 YVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178
Query: 340 LHRQF 344
L+ Q
Sbjct: 179 LYEQL 183
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F +F KY+LG+PVAG Y A++DDYVP L+ Q
Sbjct: 141 SGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQL 183
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 42/198 (21%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPTVTWDA--EPAGTYTLIMSGSDIHSGKVLAEYIGSG 209
++Y ++ +V GNELTPT VKD+P V+W + TL+M D
Sbjct: 19 VIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPD-------------A 65
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIH--SGKVLAEYI 267
P +R I LHW VVNI GS+ + G LA+Y+
Sbjct: 66 PTRQDPKYREI------------------------LHWSVVNIPGSNENPSGGHSLADYV 101
Query: 268 GSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGN 327
GSGPP TGLHRYIF +++Q I+ T P SNT+ GRL F+ ++FA K+ LG P+A N
Sbjct: 102 GSGPPKDTGLHRYIFLLYRQENKIEET-PTISNTTRTGRLNFNARDFAAKHGLGEPIAAN 160
Query: 328 FYLAQYDNYVPILHRQFM 345
+Y AQYD+YVPI ++ +
Sbjct: 161 YYQAQYDDYVPIRNKTIV 178
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 7 GRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQFM 47
GRL F+ ++FA K+ LG P+A N+Y AQYDDYVPI ++ +
Sbjct: 138 GRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNKTIV 178
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 39/209 (18%)
Query: 138 SVRDLLELQGALQMIVYPNNSKVSLGNELTPTSVKDEP-TVTWDA-EPAGTYTLIMSGSD 195
S+ ++ E L + Y LG LTPT VK P +++WD +P YTLI++ D
Sbjct: 9 SLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPD 68
Query: 196 IHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGS 255
S K + + H+LVVN++G+
Sbjct: 69 APSRK-------------------------------------KPVYREWHHFLVVNMKGN 91
Query: 256 DIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFA 315
DI SG VL++Y+GSGPP GTGLHRY++ V++Q + EP +N S + R F T F
Sbjct: 92 DISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFR 151
Query: 316 DKYKLGSPVAGNFYLAQYDNYVPILHRQF 344
KY LG+PVAG Y A++D+YVP L++Q
Sbjct: 152 KKYHLGAPVAGTCYQAEWDSYVPKLYKQL 180
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F T F KY LG+PVAG Y A++D YVP L++Q
Sbjct: 138 SGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQL 180
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 39/195 (20%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPT-VTWDAEPAGT-YTLIMSGSDIHSGKVLAEYIGSG 209
+ Y + LG LTPT VK+ PT ++WD +G YTL+++ D S K
Sbjct: 27 VTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRK--------- 77
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGS 269
+ + H+LVVN++G+DI SG VL++Y+GS
Sbjct: 78 ----------------------------DPKYREWHHFLVVNMKGNDISSGTVLSDYVGS 109
Query: 270 GPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFY 329
GPP GTGLHRY++ V++Q + EP SN S + R F +F KY+L +PVAG Y
Sbjct: 110 GPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCY 169
Query: 330 LAQYDNYVPILHRQF 344
A++D+YVP L+ Q
Sbjct: 170 QAEWDDYVPKLYEQL 184
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F +F KY+L +PVAG Y A++DDYVP L+ Q
Sbjct: 142 SGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKLYEQL 184
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 39/185 (21%)
Query: 162 LGNELTPTSVKDEPT-VTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRY 219
LG LTPT V + P+ ++WD +P YTL+++ D S K
Sbjct: 40 LGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRK------------------- 80
Query: 220 IFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPPLGTGLHR 279
+ + H+LVVN++G+DI SG VL+EY+GSGPP TGLHR
Sbjct: 81 ------------------DPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHR 122
Query: 280 YIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDNYVPI 339
Y++ V++Q ++ EP SN S + R F ++F KY LG+PVAG + A++D+ VP
Sbjct: 123 YVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPK 182
Query: 340 LHRQF 344
LH Q
Sbjct: 183 LHDQL 187
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F ++F KY LG+PVAG + A++DD VP LH Q
Sbjct: 145 SGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQL 187
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 39/185 (21%)
Query: 162 LGNELTPTSVKDEPT-VTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRY 219
LG LTPT V + P+ ++WD +P YTL+++ D S K
Sbjct: 37 LGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRK------------------- 77
Query: 220 IFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPPLGTGLHR 279
+ + H+LVVN++G+DI SG VL+EY+GSGPP TGLHR
Sbjct: 78 ------------------DPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHR 119
Query: 280 YIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDNYVPI 339
Y++ V++Q ++ EP SN S + R F + F KY LG+PVAG + A++D+ VP
Sbjct: 120 YVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPK 179
Query: 340 LHRQF 344
LH Q
Sbjct: 180 LHDQL 184
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F + F KY LG+PVAG + A++DD VP LH Q
Sbjct: 142 SGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQL 184
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 47/187 (25%)
Query: 150 QMIVYPNNSKVSLGNELTPTSVKDEPTVTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIGS 208
+M V N +VS G+EL P+SV +P V + +TL+M D+
Sbjct: 33 KMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDV-----------P 81
Query: 209 GPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGS-DIHSGKVLAEYI 267
GP ++P+ +K LHW+V NI G+ D GK + Y
Sbjct: 82 GP----------------------SDPF----LKEHLHWIVTNIPGTTDATFGKEVVSYE 115
Query: 268 GSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGN 327
P +G +HR++F +F+Q + + R F+T+ FA +Y LG PVA
Sbjct: 116 LPRPSIG--IHRFVFVLFRQK------QRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAV 167
Query: 328 FYLAQYD 334
F+ AQ +
Sbjct: 168 FFNAQRE 174
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 8 RLGFSTQNFADKYKLGSPVAGNFYLAQYD 36
R F+T+ FA +Y LG PVA F+ AQ +
Sbjct: 146 RDHFNTRKFAVEYDLGLPVAAVFFNAQRE 174
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 230 IDFTEPYSSN-TVKGFLHWLVVNIQGSDIHS-GKVLAEYIGSGPPLGTGLHRYIFYVFKQ 287
+D P S+ ++ +LHWLV +I G+ S G+ + Y P +G +HR +F +F+Q
Sbjct: 72 VDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMG--IHRLVFVLFQQ 129
Query: 288 TGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYD 334
G P R F+T++FA+ Y LGSPVA ++ +Q +
Sbjct: 130 LGRQTVYAP-------GWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 8 RLGFSTQNFADKYKLGSPVAGNFYLAQYD 36
R F+T++FA+ Y LGSPVA ++ +Q +
Sbjct: 141 RQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 230 IDFTEPYSSNT-VKGFLHWLVVNIQGSDIHSGKVLAEYIGS--GPPLGTGLHRYIFYVFK 286
+D P SN ++ +LHWLV +I + +G I S P G+HR +F +F+
Sbjct: 73 VDPDVPSPSNPHLREYLHWLVTDIPAT---TGTTFGNEIVSYENPSPTAGIHRVVFILFR 129
Query: 287 QTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYD 334
Q G P R F+T+ FA+ Y LG PVA FY +Q +
Sbjct: 130 QLGRQTVYAP-------GWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 170
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 8 RLGFSTQNFADKYKLGSPVAGNFYLAQYD 36
R F+T+ FA+ Y LG PVA FY +Q +
Sbjct: 142 RQNFNTREFAEIYNLGLPVAAVFYNSQRE 170
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 35/126 (27%)
Query: 138 SVRDLLELQGALQMIVYPNNSKVSL-----------GNELTPTSVKDEPTVTWDAEPAGT 186
++RD L + + ++ P N ++L G L P+ V+++P V E
Sbjct: 7 NIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRN 66
Query: 187 -YTLIMSGSDIHS--GKVLAEYIG---------------------SGPPLGTGLHRYIFY 222
YTL+M D+ S L EY+ P G+HR +F
Sbjct: 67 FYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFI 126
Query: 223 VFKQSG 228
+F+Q G
Sbjct: 127 LFRQLG 132
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 51/192 (26%)
Query: 149 LQMIVYPNNS--KVSLGNELTPTSVKDEPTV-TWDAEPAGTYTLIMSGSDIHSGKVLAEY 205
+ +I NNS V G+EL P++V P V + +TLIM+ D+
Sbjct: 29 MSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDV--------- 79
Query: 206 IGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGS-DIHSGKVLA 264
GP ++PY ++ LHW+V +I G+ D GK +
Sbjct: 80 --PGP----------------------SDPY----LREHLHWIVTDIPGTTDSSFGKEVV 111
Query: 265 EYIGSGPPLGTGLHRYIFYVFKQT--GYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGS 322
Y P G+HR++F +FKQ G + P R GF+T+ F + +LG
Sbjct: 112 SY--EMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVC------RDGFNTRKFTQENELGL 163
Query: 323 PVAGNFYLAQYD 334
PVA F+ Q +
Sbjct: 164 PVAAVFFNCQRE 175
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 182 EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYID 231
E +G S + L EY+G PP G+G HRY+F ++KQ +D
Sbjct: 127 ETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVD 176
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 251 NIQGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYID 292
N +GS+ L EY+G PP G+G HRY+F ++KQ +D
Sbjct: 140 NTKGSN-----TLIEYMGPAPPKGSGPHRYVFLLYKQPKGVD 176
>pdb|9RUB|A Chain A, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
Carboxylase Complexed With Its Substrate, Ribulose-1,5-
Bisphosphate
pdb|9RUB|B Chain B, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
Carboxylase Complexed With Its Substrate, Ribulose-1,5-
Bisphosphate
Length = 466
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 185 GTYTLIMSGSDI-HSGKVLAEYIGSGPPLGTGLHRY--IFYVFKQSGYIDFTEPYSSNTV 241
G Y L G + H ++ Y+ + T R+ F + ++G+ T P S
Sbjct: 244 GEYVLETFGENASHVALLVDGYVAGAAAITTARRRFPDNFLHYHRAGHGAVTSPQSKRGY 303
Query: 242 KGFLHWLVVNIQG-SDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQ 287
F+H + +QG S IH+G +G G G R I Y+ Q
Sbjct: 304 TAFVHCKMARLQGASGIHTGT-----MGFGKMEGESSDRAIAYMLTQ 345
>pdb|1RBA|A Chain A, Substitution Of Asp193 To Asn At The Active Site Of
Ribulose-1,5- Bisphosphate Carboxylase Results In
Conformational Changes
pdb|1RBA|B Chain B, Substitution Of Asp193 To Asn At The Active Site Of
Ribulose-1,5- Bisphosphate Carboxylase Results In
Conformational Changes
Length = 466
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 185 GTYTLIMSGSDI-HSGKVLAEYIGSGPPLGTGLHRY--IFYVFKQSGYIDFTEPYSSNTV 241
G Y L G + H ++ Y+ + T R+ F + ++G+ T P S
Sbjct: 244 GEYVLETFGENASHVALLVDGYVAGAAAITTARRRFPDNFLHYHRAGHGAVTSPQSKRGY 303
Query: 242 KGFLHWLVVNIQG-SDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQ 287
F+H + +QG S IH+G +G G G R I Y+ Q
Sbjct: 304 TAFVHCKMARLQGASGIHTGT-----MGFGKMEGESSDRAIAYMLTQ 345
>pdb|1RUS|A Chain A, Crystal Structure Of The Binary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase And Its Product, 3-Phospho-D-
Glycerate
pdb|1RUS|B Chain B, Crystal Structure Of The Binary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase And Its Product, 3-Phospho-D-
Glycerate
pdb|2RUS|A Chain A, Crystal Structure Of The Ternary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase, Mg(Ii), And Activator Co2 At
2.3- Angstroms Resolution
pdb|2RUS|B Chain B, Crystal Structure Of The Ternary Complex Of Ribulose-1,5-
Bisphosphate Carboxylase, Mg(Ii), And Activator Co2 At
2.3- Angstroms Resolution
pdb|5RUB|A Chain A, Crystallographic Refinement And Structure Of Ribulose-1,5-
Bisphosphate Carboxylase From Rhodospirillum Rubrum At
1.7 Angstroms Resolution
pdb|5RUB|B Chain B, Crystallographic Refinement And Structure Of Ribulose-1,5-
Bisphosphate Carboxylase From Rhodospirillum Rubrum At
1.7 Angstroms Resolution
Length = 490
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 185 GTYTLIMSGSDI-HSGKVLAEYIGSGPPLGTGLHRYI--FYVFKQSGYIDFTEPYSSNTV 241
G Y L G + H ++ Y+ + T R+ F + ++G+ T P S
Sbjct: 268 GEYVLETFGENASHVALLVDGYVAGAAAITTARRRFPDNFLHYHRAGHGAVTSPQSKRGY 327
Query: 242 KGFLHWLVVNIQG-SDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQ 287
F+H + +QG S IH+G +G G G R I Y+ Q
Sbjct: 328 TAFVHCKMARLQGASGIHTGT-----MGFGKMEGESSDRAIAYMLTQ 369
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 242 KGFLHWLVVNIQGSDIHSGK-----VLAEYIGSGPPLGTGLHRYIFYV 284
K ++HW+V I+ ++ G + Y+G GTGLHR F +
Sbjct: 104 KEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
>pdb|4E4J|A Chain A, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|B Chain B, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|C Chain C, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|D Chain D, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|E Chain E, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|F Chain F, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|G Chain G, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|H Chain H, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|I Chain I, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|J Chain J, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|K Chain K, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|L Chain L, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
Length = 433
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 17 ADKYKLGSPVAGNFYLAQY-DDYVPILHRQFMPVLVDH 53
A+ Y+L S N ++ QY D+ +P+L ++ PV+ D+
Sbjct: 105 AETYELCSKEVRNSFIEQYLDEALPVLKKEIRPVVKDY 142
>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
N-Terminally Truncated Glucansucrase Gtfa
Length = 1049
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 66 RAVIGLDEKFTKKLVAFIAKHIDV--------PQYFDVLSQTTYIIIDVLEEMIDSGLSP 117
A G+D A KHI++ P+YF+ + + D ++ ++ GLS
Sbjct: 304 NAAYGMDSD------AVSNKHINILEDWNHADPEYFNKIGNPQLTMDDTIKNSLNHGLSD 357
Query: 118 S----GSLVSILQRLARRIKSEQESVRDLLELQGALQMIVYPNNSKVSLGNELTPTSVKD 173
+ G + Q LA R + E+V + + + NNS+ + N + + KD
Sbjct: 358 ATNRWGLDAIVHQSLADRENNSTENVV----IPNYSFVRAHDNNSQDQIQNAIRDVTGKD 413
Query: 174 EPTVTWDAEPAG 185
T T++ E G
Sbjct: 414 YHTFTFEDEQKG 425
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 242 KGFLHWLVVNIQGSDIHSGK-----VLAEYIGSGPPLGTGLHRYIF 282
+ ++HW V I+ ++ G L Y+G GTGLHR F
Sbjct: 97 RDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISF 142
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 242 KGFLHWLVVNIQGSDIHSGKVLAEYIGSG---PPLGTGLHRYIFYVFKQTGYIDFTEP 296
KG +V I+ + GKV G G PP+G +F + ++TG++ TEP
Sbjct: 14 KGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVG------VFIIERETGWLKVTEP 65
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 249 VVNIQGSDIHSGKVLAEYIGSG---PPLGTGLHRYIFYVFKQTGYIDFTEP 296
+V I+ + GKV G G PP+G +F + ++TG++ TEP
Sbjct: 25 LVQIKSNKDKEGKVFYSITGQGADTPPVG------VFIIERETGWLKVTEP 69
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 109 EMIDSGLSPSGSLVSILQRLARRIKSEQESVRDLLELQGAL-----QMIVYPNNSKVSL 162
+++D + P S+ + LARRI++E V L GA+ M+ YP N + S+
Sbjct: 214 DLLDWLVGPVESVYAYTATLARRIEAEDTGVAALRWRHGAMGSINVTMLTYPQNLEGSI 272
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 249 VVNIQGSDIHSGKVLAEYIGSG---PPLGTGLHRYIFYVFKQTGYIDFTEP 296
+V I+ + GKV G G PP+G +F + ++TG++ TEP
Sbjct: 25 LVQIKSNKDKEGKVFYSITGQGADTPPVG------VFIIERETGWLKVTEP 69
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 249 VVNIQGSDIHSGKVLAEYIGSG---PPLGTGLHRYIFYVFKQTGYIDFTEP 296
+V I+ + GKV G G PP+G +F + ++TG++ TEP
Sbjct: 22 LVQIKSNKDKEGKVFYSITGQGADTPPVG------VFIIERETGWLKVTEP 66
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 249 VVNIQGSDIHSGKVLAEYIGSG---PPLGTGLHRYIFYVFKQTGYIDFTEP 296
+V I+ + GKV G G PP+G +F + ++TG++ TEP
Sbjct: 22 LVQIKSNKDKEGKVFYSITGQGADTPPVG------VFIIERETGWLKVTEP 66
>pdb|2OKM|A Chain A, Crystal Structure Of Ace19, The Collagen Binding Subdomain
Of Enterococcus Faecalis Surface Protein Ace
Length = 147
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 238 SNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTE 295
SN V+ FL+ VN+ SD+ +A+ GSG L + K+T YI E
Sbjct: 17 SNQVRWFLN---VNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYISLAE 71
>pdb|2Z1P|A Chain A, The Enterococcus Faecalis Mscramm Ace Binds Its Ligands By
The Collagen Hug Model
Length = 348
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 238 SNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTE 295
SN V+ FL+ VN+ SD+ +A+ GSG L + K+T YI E
Sbjct: 170 SNQVRWFLN---VNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKETKYISLAE 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,023,022
Number of Sequences: 62578
Number of extensions: 498355
Number of successful extensions: 1081
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 53
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)