Query psy11040
Match_columns 346
No_of_seqs 290 out of 1558
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 16:34:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3346|consensus 100.0 1.7E-42 3.6E-47 309.6 14.8 173 131-345 6-183 (185)
2 PLN00169 CETS family protein; 100.0 3.1E-37 6.7E-42 275.5 14.8 163 131-340 7-173 (175)
3 cd00866 PEBP_euk PhosphatidylE 100.0 1.7E-31 3.6E-36 233.2 16.0 146 149-331 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 99.9 1E-22 2.3E-27 176.1 11.7 131 148-330 2-146 (146)
5 PF09384 UTP15_C: UTP15 C term 99.8 3.6E-21 7.7E-26 168.0 5.7 100 43-146 43-142 (148)
6 cd00457 PEBP PhosphatidylEthan 99.8 4.6E-18 9.9E-23 150.0 11.7 124 159-331 6-159 (159)
7 KOG0310|consensus 99.6 7.8E-16 1.7E-20 152.6 7.3 98 45-146 377-474 (487)
8 KOG3346|consensus 99.3 9.2E-13 2E-17 118.4 3.6 121 150-272 35-177 (185)
9 cd00865 PEBP_bact_arch Phospha 99.2 7.8E-11 1.7E-15 103.0 10.4 93 172-319 25-137 (150)
10 PRK10257 putative kinase inhib 99.2 1.5E-10 3.3E-15 102.2 9.6 79 173-294 30-131 (158)
11 PRK09818 putative kinase inhib 99.1 1.7E-10 3.8E-15 104.0 9.5 92 160-293 29-153 (183)
12 COG1881 Phospholipid-binding p 99.1 2.4E-10 5.2E-15 102.3 8.1 89 159-290 29-140 (174)
13 TIGR00481 Raf kinase inhibitor 99.0 2.3E-09 5E-14 93.0 10.5 91 173-319 14-128 (141)
14 PLN00169 CETS family protein; 98.6 1.1E-08 2.3E-13 91.9 2.2 83 185-270 83-170 (175)
15 cd00866 PEBP_euk PhosphatidylE 98.4 1.4E-07 3E-12 82.3 1.8 38 197-234 81-118 (154)
16 PF01161 PBP: Phosphatidyletha 97.7 8.1E-05 1.8E-09 64.2 6.0 34 199-232 84-117 (146)
17 cd00457 PEBP PhosphatidylEthan 97.4 4.9E-05 1.1E-09 67.1 0.8 51 203-253 99-149 (159)
18 cd00865 PEBP_bact_arch Phospha 93.8 0.06 1.3E-06 46.9 3.4 30 202-232 94-123 (150)
19 PRK09818 putative kinase inhib 92.8 0.085 1.8E-06 47.9 2.8 25 203-227 123-147 (183)
20 PRK10257 putative kinase inhib 91.0 0.24 5.1E-06 43.9 3.5 31 202-233 100-131 (158)
21 COG1881 Phospholipid-binding p 90.3 0.24 5.1E-06 44.7 2.9 26 204-230 116-141 (174)
22 TIGR00481 Raf kinase inhibitor 89.3 0.41 8.9E-06 41.5 3.6 30 202-233 85-115 (141)
23 PF04003 Utp12: Dip2/Utp12 Fam 81.7 2.6 5.6E-05 34.2 4.5 85 57-145 11-98 (110)
24 KOG2733|consensus 59.0 11 0.00023 38.0 3.7 46 60-105 30-89 (423)
25 PF12022 DUF3510: Domain of un 43.0 31 0.00068 29.1 3.6 64 73-136 38-104 (125)
26 PF08625 Utp13: Utp13 specific 28.1 1.4E+02 0.003 25.8 5.3 62 48-109 26-96 (141)
No 1
>KOG3346|consensus
Probab=100.00 E-value=1.7e-42 Score=309.61 Aligned_cols=173 Identities=47% Similarity=0.860 Sum_probs=161.1
Q ss_pred hhhcccccccchhhcc--ceeEEEEeCCCeeecCCcccCcccccCCCeEEEe--cCCCceeEEEeecCcCCCceeEeecc
Q psy11040 131 RIKSEQESVRDLLELQ--GALQMIVYPNNSKVSLGNELTPTSVKDEPTVTWD--AEPAGTYTLIMSGSDIHSGKVLAEYI 206 (346)
Q Consensus 131 kvf~e~~IiPDVl~~~--~~~L~V~y~n~~~v~~G~~l~~~~~~~~P~v~~~--~~~~~~ytl~m~DpD~p~~~~~~~Y~ 206 (346)
+.+.+.++++|+++.. ...|.|.|+++..|++|+.|+++++...|.++|+ ++++++|||+|+|||+|+++
T Consensus 6 ~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~------ 79 (185)
T KOG3346|consen 6 DPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRS------ 79 (185)
T ss_pred hhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCC------
Confidence 4567899999999996 8999999998899999999999999999999999 47889999999999999987
Q ss_pred CCCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEEeecCCCC-ccCCcccccccCCCCCCCCCCccEEEEEe
Q psy11040 207 GSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSD-IHSGKVLAEYIGSGPPLGTGLHRYIFYVF 285 (346)
Q Consensus 207 ~p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~~n~~~~~-~~~~~~~~~Y~~P~Pp~gsg~HRYvflLf 285 (346)
+| .+++++||+++||+|+. ++.|..+++|++|.||+|+|.||||||||
T Consensus 80 ---------------------------~p----~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~ 128 (185)
T KOG3346|consen 80 ---------------------------DP----KFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLY 128 (185)
T ss_pred ---------------------------CC----cceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEE
Confidence 66 78999999999999998 99999999999999999999999999999
Q ss_pred eeCCCCCcCCCCCCCCCCCCCCCcChHHHHHHhCCCCceEEEEEEEecCCCHHHHHhhcC
Q psy11040 286 KQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDNYVPILHRQFM 345 (346)
Q Consensus 286 ~Q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~n~F~~~~d~~v~~~~~~~~ 345 (346)
+|+++.++.++ +...|.+||+++|+++++|++||||+||++|||++|+.++++++
T Consensus 129 rQ~~~~~~~~~-----~~~~R~~F~~~~F~~~~~lg~PvA~~~f~aq~d~~~~~~~~~~~ 183 (185)
T KOG3346|consen 129 RQPGRLDSDEP-----SPLSRGNFNTRKFAKKYELGTPVAGNFFQAQWDDYVPKLYKQLG 183 (185)
T ss_pred EcCCccccccC-----CCCcccceeHHHHHHHhccCCchhhheehhhcchhhHHHHHhhc
Confidence 99999887653 34789999999999999999999999999999999999999875
No 2
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=275.52 Aligned_cols=163 Identities=29% Similarity=0.494 Sum_probs=143.2
Q ss_pred hhhcccccccchhhcc--ceeEEEEeCCCeeecCCcccCcccccCCCeEEEec-CCCceeEEEeecCcCCCceeEeeccC
Q psy11040 131 RIKSEQESVRDLLELQ--GALQMIVYPNNSKVSLGNELTPTSVKDEPTVTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIG 207 (346)
Q Consensus 131 kvf~e~~IiPDVl~~~--~~~L~V~y~n~~~v~~G~~l~~~~~~~~P~v~~~~-~~~~~ytl~m~DpD~p~~~~~~~Y~~ 207 (346)
+.+.+++|+||+++.+ ...|.|.|++ ..|++|+.|++++++.+|+|+|.+ +.+++|||+|+|||+|+++
T Consensus 7 ~~l~~~~iipdvid~f~P~~~L~V~y~s-~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~------- 78 (175)
T PLN00169 7 DPLVVGRVVGDVLDPFTRSISLRVTYGS-REVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPS------- 78 (175)
T ss_pred cchhhCCcCCcccCCcCCceEEEEEECC-cCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCC-------
Confidence 4567899999999975 8999999986 689999999999999999999985 4568999999999999876
Q ss_pred CCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEEeecCCCC-ccCCcccccccCCCCCCCCCCccEEEEEee
Q psy11040 208 SGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSD-IHSGKVLAEYIGSGPPLGTGLHRYIFYVFK 286 (346)
Q Consensus 208 p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~~n~~~~~-~~~~~~~~~Y~~P~Pp~gsg~HRYvflLf~ 286 (346)
+| ..++++||++.|++++. ...|..+++|.+|.|| +|+|||+|+||+
T Consensus 79 --------------------------~~----~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp--~G~HRYvflly~ 126 (175)
T PLN00169 79 --------------------------NP----NLREYLHWLVTDIPATTGATFGQEVVCYESPRPT--AGIHRFVFVLFR 126 (175)
T ss_pred --------------------------CC----CcccEEEEEEeCCccccccccCccceeecCCCCC--CCceeEEEEEEE
Confidence 44 57889999999999874 3567889999999998 579999999999
Q ss_pred eCCCCCcCCCCCCCCCCCCCCCcChHHHHHHhCCCCceEEEEEEEecCCCHHHH
Q psy11040 287 QTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDNYVPIL 340 (346)
Q Consensus 287 Q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~n~F~~~~d~~v~~~ 340 (346)
|++.+++.. ..+|.+||+++|++++||+.|||||||++||+++++..
T Consensus 127 Q~~~~~~~~-------~~~R~~F~~~~Fa~~~~L~~PvA~nfF~a~~~~~~~~~ 173 (175)
T PLN00169 127 QLGRQTVYA-------PGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGSGGR 173 (175)
T ss_pred cCCCcccCC-------cccCCCcCHHHHHHHhCCCCceEEEEEEEecCCcCCcc
Confidence 998765432 25799999999999999999999999999999988754
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=99.97 E-value=1.7e-31 Score=233.24 Aligned_cols=146 Identities=46% Similarity=0.816 Sum_probs=127.3
Q ss_pred eEEEEeCCCeeecCCcccCcccccCCCeEEEecC--CCceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEee
Q psy11040 149 LQMIVYPNNSKVSLGNELTPTSVKDEPTVTWDAE--PAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQ 226 (346)
Q Consensus 149 ~L~V~y~n~~~v~~G~~l~~~~~~~~P~v~~~~~--~~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q 226 (346)
.|.|.|++...+.+|+.+++.+++.+|+++|... .++.|+++|+|||+|..+
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~-------------------------- 55 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRD-------------------------- 55 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCC--------------------------
Confidence 5899999767999999999999999999999864 478999999999999765
Q ss_pred cCccccCCCCCCCCceeeEEEEEeecCCCC-----ccCCcccccccCCCCCCCCCCccEEEEEeeeCCCCCcCCCCCCCC
Q psy11040 227 SGYIDFTEPYSSNTVKGFLHWLVVNIQGSD-----IHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNT 301 (346)
Q Consensus 227 ~~~~~~~~p~~~~~~~~~~hw~~~n~~~~~-----~~~~~~~~~Y~~P~Pp~gsg~HRYvflLf~Q~~~~~~~~~~~~~~ 301 (346)
++ ...+++||++.|++++. ...+..+++|.+|.||+|+|+|||+|+||+|++.+++........
T Consensus 56 -------~~----~~~~~lHwl~~ni~~~~~~~~~~~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~ 124 (154)
T cd00866 56 -------DP----KFREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPT 124 (154)
T ss_pred -------CC----CCCCEEEEEEeCcCCccccccccCCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccC
Confidence 33 56789999999999776 456788999999999999999999999999999887765433234
Q ss_pred CCCCCCCcChHHHHHHhCCCCceEEEEEEE
Q psy11040 302 SAEGRLGFSTQNFADKYKLGSPVAGNFYLA 331 (346)
Q Consensus 302 ~~~~R~~F~~~~F~~~~~L~~pva~n~F~~ 331 (346)
....|.+||+++|++++||+.|||+|||++
T Consensus 125 ~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 125 SGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 568999999999999999998899999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.89 E-value=1e-22 Score=176.08 Aligned_cols=131 Identities=36% Similarity=0.686 Sum_probs=103.3
Q ss_pred eeEEEEeCCCeeecCCcccCccc-ccCCCeEEEecCCCceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEee
Q psy11040 148 ALQMIVYPNNSKVSLGNELTPTS-VKDEPTVTWDAEPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQ 226 (346)
Q Consensus 148 ~~L~V~y~n~~~v~~G~~l~~~~-~~~~P~v~~~~~~~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q 226 (346)
..|.|.|.++..+++|+.++++. ++..|+ ..+.|+|+|+|+|+|..+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~------~~~~y~lim~D~D~P~~~-------------------------- 49 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT------GTKSYTLIMVDPDAPSRE-------------------------- 49 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC------TTSEEEEEEEETTSSBTT--------------------------
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC------CCcEEEEEEECCCCCccc--------------------------
Confidence 57899995448999999999999 888888 567999999999998744
Q ss_pred cCccccCCCCCCCCceeeEEEEEeecC---------C--CCc-cCCcccccccCCCCCCCCCCccEEEEEeeeCCCCCcC
Q psy11040 227 SGYIDFTEPYSSNTVKGFLHWLVVNIQ---------G--SDI-HSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFT 294 (346)
Q Consensus 227 ~~~~~~~~p~~~~~~~~~~hw~~~n~~---------~--~~~-~~~~~~~~Y~~P~Pp~gsg~HRYvflLf~Q~~~~~~~ 294 (346)
++ ....++||++.|++ + ... ..|..+++|.+|+||+|+|.|||+|+||+|++.+++.
T Consensus 50 -------~~----~~~~~~Hwl~~ni~~~~~~~~~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~ 118 (146)
T PF01161_consen 50 -------NP----SFGPFLHWLVTNIPSTELPEGSDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS 118 (146)
T ss_dssp -------SC----TTTSEEEEEEEEEETSEE-TTSSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG
T ss_pred -------cC----CCCcEEEEEEcCCCCccCCCCCCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC
Confidence 33 46789999999999 2 111 2255689999999999999999999999999965442
Q ss_pred CCCCCCCCCCCCCCcChHHHHHHhCCCCc-eEEEEEE
Q psy11040 295 EPYSSNTSAEGRLGFSTQNFADKYKLGSP-VAGNFYL 330 (346)
Q Consensus 295 ~~~~~~~~~~~R~~F~~~~F~~~~~L~~p-va~n~F~ 330 (346)
.....+++++..++++|+.+ +|||||+
T Consensus 119 ---------~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 119 ---------DGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp ---------BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred ---------CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 23345788888899999977 8999997
No 5
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=99.83 E-value=3.6e-21 Score=167.98 Aligned_cols=100 Identities=27% Similarity=0.414 Sum_probs=93.0
Q ss_pred ccccCcchhhhHHHHHHhhhhhhhhhcCCchhhHHHHHHHHHhccCCCchhHHHhhhhhhhhhhhhhhhhccCCCchhHH
Q psy11040 43 HRQFMPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHIDVPQYFDVLSQTTYIIIDVLEEMIDSGLSPSGSLV 122 (346)
Q Consensus 43 ~~~~~~~~~~~~~~eL~~R~~L~~AL~gRde~~l~piL~fl~k~i~dpr~~~~L~~va~~iLDiYe~~~~~~l~~S~~l~ 122 (346)
.+.-+|.++.++++||+|||||++||+||||.+|+|||+|++|||+||||+++|+++++++||+|++ .++.|+.++
T Consensus 43 ~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~----~~~~s~~v~ 118 (148)
T PF09384_consen 43 VKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRILVDVANIILDIYSP----VIGQSPEVD 118 (148)
T ss_pred hcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHH----HhcccHHHH
Confidence 4667899999999999999999999999999999999999999999999999999999999999954 466688899
Q ss_pred HHHHHHHHhhhcccccccchhhcc
Q psy11040 123 SILQRLARRIKSEQESVRDLLELQ 146 (346)
Q Consensus 123 ~~~~~L~~kvf~e~~IiPDVl~~~ 146 (346)
++|.+|.+++.+|..+...+....
T Consensus 119 ~~~~~L~~~v~~E~~~~~~l~~l~ 142 (148)
T PF09384_consen 119 KLFQKLQRKVQEELQLQKELLELQ 142 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888765
No 6
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.76 E-value=4.6e-18 Score=150.03 Aligned_cols=124 Identities=32% Similarity=0.534 Sum_probs=98.0
Q ss_pred eecC-CcccCc----ccccCCCeEEEecC--CCceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEeecCccc
Q psy11040 159 KVSL-GNELTP----TSVKDEPTVTWDAE--PAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYID 231 (346)
Q Consensus 159 ~v~~-G~~l~~----~~~~~~P~v~~~~~--~~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~ 231 (346)
.+.. |+.|.+ ......|.++|+.. ..+.|+|+|.|||+|.+
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~~-------------------------------- 53 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPLG-------------------------------- 53 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCCC--------------------------------
Confidence 3445 888887 77778899999864 45789999999999742
Q ss_pred cCCCCCCCCceeeEEEEEeecCCCCcc-------------CCc----------ccccccCCCCCCCCCCccEEEEEeeeC
Q psy11040 232 FTEPYSSNTVKGFLHWLVVNIQGSDIH-------------SGK----------VLAEYIGSGPPLGTGLHRYIFYVFKQT 288 (346)
Q Consensus 232 ~~~p~~~~~~~~~~hw~~~n~~~~~~~-------------~~~----------~~~~Y~~P~Pp~gsg~HRYvflLf~Q~ 288 (346)
++++||++.||+.+... .+. ..+.|.||+||.|+|.|||+|+||+|+
T Consensus 54 ----------~~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald 123 (159)
T cd00457 54 ----------RPIVHGLVYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALD 123 (159)
T ss_pred ----------CCceEEEEeccCcccccccccccccCCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEec
Confidence 36899999999865311 111 245999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCCCCCCcChHHHHHHhCCCCceEEEEEEE
Q psy11040 289 GYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFYLA 331 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~n~F~~ 331 (346)
..+++.+ ....|..|++.+|++.+.|+ ++|.+++++
T Consensus 124 ~~~~~~~------~~~~~~~~~~~~~~~~~vL~-~~a~~~~~~ 159 (159)
T cd00457 124 EPLDRSK------LGDGRTKFEVARFAEGNVLG-AVGEWVGQF 159 (159)
T ss_pred Ccccccc------ccCCCCHHHHHHHHHhCeee-EEEEEEEEC
Confidence 8765432 12578899999999999996 799998863
No 7
>KOG0310|consensus
Probab=99.61 E-value=7.8e-16 Score=152.58 Aligned_cols=98 Identities=27% Similarity=0.386 Sum_probs=92.2
Q ss_pred ccCcchhhhHHHHHHhhhhhhhhhcCCchhhHHHHHHHHHhccCCCchhHHHhhhhhhhhhhhhhhhhccCCCchhHHHH
Q psy11040 45 QFMPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHIDVPQYFDVLSQTTYIIIDVLEEMIDSGLSPSGSLVSI 124 (346)
Q Consensus 45 ~~~~~~~~~~~~eL~~R~~L~~AL~gRde~~l~piL~fl~k~i~dpr~~~~L~~va~~iLDiYe~~~~~~l~~S~~l~~~ 124 (346)
+-+|.++.+.++||.|||+|++||+||||.+|.++|+||++||+++||+++|++++++|||+|++. ++.|+.+.++
T Consensus 377 ~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~----i~~s~~l~k~ 452 (487)
T KOG0310|consen 377 KKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARD----IEGSPMLAKL 452 (487)
T ss_pred cCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhh----hccCHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999664 5568999999
Q ss_pred HHHHHHhhhcccccccchhhcc
Q psy11040 125 LQRLARRIKSEQESVRDLLELQ 146 (346)
Q Consensus 125 ~~~L~~kvf~e~~IiPDVl~~~ 146 (346)
++.|..++.+|..+..+++..+
T Consensus 453 i~~L~~~V~~Ev~~q~ellr~~ 474 (487)
T KOG0310|consen 453 IQALRGKVEQEVRVQKELLRLI 474 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 8
>KOG3346|consensus
Probab=99.31 E-value=9.2e-13 Score=118.41 Aligned_cols=121 Identities=25% Similarity=0.390 Sum_probs=89.6
Q ss_pred EEEEeCCCeeecCCcccCcccccCCC----eEEE-----ecC-----CC--c----eeEEEeecCc-CCCceeEeeccCC
Q psy11040 150 QMIVYPNNSKVSLGNELTPTSVKDEP----TVTW-----DAE-----PA--G----TYTLIMSGSD-IHSGKVLAEYIGS 208 (346)
Q Consensus 150 L~V~y~n~~~v~~G~~l~~~~~~~~P----~v~~-----~~~-----~~--~----~ytl~m~DpD-~p~~~~~~~Y~~p 208 (346)
..|+=|+ .++|-+...++.++..+ .-.+ +.+ .. . |.+..|++.+ +..|+++++|.+|
T Consensus 35 ~~v~~G~--~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P 112 (185)
T KOG3346|consen 35 IVVENGN--ELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRSDPKFREWLHWLVTNIPGTDGISKGQEISEYLGP 112 (185)
T ss_pred eeecCCC--EeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCCCCcceeEEEEEEEeecCCccccCCeEeeeeeCC
Confidence 4455444 88888888888776543 2112 221 11 2 5566667777 8899999999999
Q ss_pred CCCCCCCcceEEEEEEeecCccccCCC-CCCCCceeeEEEEEeecCCCCccCCcccccccCCCCC
Q psy11040 209 GPPLGTGLHRYIFYVFKQSGYIDFTEP-YSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGSGPP 272 (346)
Q Consensus 209 ~p~~gtg~hr~vfll~~q~~~~~~~~p-~~~~~~~~~~hw~~~n~~~~~~~~~~~~~~Y~~P~Pp 272 (346)
.|++|||+|||||+||||+++.++..+ ......++.+.|....-.|.|+++.+++++|+.-+|-
T Consensus 113 ~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg~PvA~~~f~aq~d~~~~~ 177 (185)
T KOG3346|consen 113 GPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELGTPVAGNFFQAQWDDYVPK 177 (185)
T ss_pred CCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccCCchhhheehhhcchhhHH
Confidence 999999999999999999999998653 1223445666666677789999999999999887653
No 9
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.22 E-value=7.8e-11 Score=102.96 Aligned_cols=93 Identities=29% Similarity=0.520 Sum_probs=70.9
Q ss_pred cCCCeEEEecC--CCceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEE
Q psy11040 172 KDEPTVTWDAE--PAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLV 249 (346)
Q Consensus 172 ~~~P~v~~~~~--~~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~ 249 (346)
...|.++|+.. ..+.|+|+|.|+|+|.+ ..++||++
T Consensus 25 ~~SP~l~w~~~p~~t~s~al~m~D~Dap~~------------------------------------------~~~~HW~~ 62 (150)
T cd00865 25 NVSPPLSWSGVPAGTKSLALIVEDPDAPTG------------------------------------------GGFVHWVV 62 (150)
T ss_pred CcCCCeEEcCCCCCCeEEEEEEEcCCCCCC------------------------------------------CCEEEEEE
Confidence 35788999874 45789999999999732 35899999
Q ss_pred eecCCC--CccCC----------------cccccccCCCCCCCCCCccEEEEEeeeCCCCCcCCCCCCCCCCCCCCCcCh
Q psy11040 250 VNIQGS--DIHSG----------------KVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFST 311 (346)
Q Consensus 250 ~n~~~~--~~~~~----------------~~~~~Y~~P~Pp~gsg~HRYvflLf~Q~~~~~~~~~~~~~~~~~~R~~F~~ 311 (346)
.||+.+ .+..| .....|.||+||. .+.|||+|.||++...++. ..+++.
T Consensus 63 ~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~gP~Pp~-~~~HrY~f~vyAld~~l~~------------~~~~~~ 129 (150)
T cd00865 63 WNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYVFTVYALDVPLLL------------PPGATR 129 (150)
T ss_pred eccCcccccccCCcccccCCCCCeEeecCCCCCeecCCCCcC-CCceEEEEEEEEeCCccCC------------CCCCCH
Confidence 999975 22221 2468999999998 8899999999999987543 235777
Q ss_pred HHHHHHhC
Q psy11040 312 QNFADKYK 319 (346)
Q Consensus 312 ~~F~~~~~ 319 (346)
.++.++..
T Consensus 130 ~~l~~ai~ 137 (150)
T cd00865 130 AELLFAMK 137 (150)
T ss_pred HHHHHHHh
Confidence 77766654
No 10
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.16 E-value=1.5e-10 Score=102.16 Aligned_cols=79 Identities=34% Similarity=0.648 Sum_probs=60.8
Q ss_pred CCCeEEEecCC--CceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEEe
Q psy11040 173 DEPTVTWDAEP--AGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVV 250 (346)
Q Consensus 173 ~~P~v~~~~~~--~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~~ 250 (346)
..|.++|+..+ .+.|+|+|.|||+|.+. .++||++.
T Consensus 30 ~SP~L~w~~~P~~t~s~ali~~DpDap~~~------------------------------------------~~~HWvv~ 67 (158)
T PRK10257 30 ISPHLAWDDVPAGTKSFVVTCYDPDAPTGS------------------------------------------GWWHWVVV 67 (158)
T ss_pred CCceEEEcCCCCCceEEEEEEECCCCCCCC------------------------------------------cEEEEEEE
Confidence 37889998644 47899999999998532 58999999
Q ss_pred ecCCCCc--c-----------CC-------cccccccCCCCCCCCCCccEEEEEeeeC-CCCCcC
Q psy11040 251 NIQGSDI--H-----------SG-------KVLAEYIGSGPPLGTGLHRYIFYVFKQT-GYIDFT 294 (346)
Q Consensus 251 n~~~~~~--~-----------~~-------~~~~~Y~~P~Pp~gsg~HRYvflLf~Q~-~~~~~~ 294 (346)
||+++.. . .+ +....|.||+||.|. .|||+|.||.+. ..+++.
T Consensus 68 nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~-~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 68 NLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGE-THRYIFTVHALDVERIDVD 131 (158)
T ss_pred cCCCCcccccCCCCcccccCCCCceeccccCCCccCcCCCCccCC-CceEEEEEEEecCcccCCC
Confidence 9986521 0 01 125689999999997 699999999998 466653
No 11
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.15 E-value=1.7e-10 Score=104.02 Aligned_cols=92 Identities=29% Similarity=0.597 Sum_probs=67.5
Q ss_pred ecCCcccCccccc---------CCCeEEEecCC--CceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEeecC
Q psy11040 160 VSLGNELTPTSVK---------DEPTVTWDAEP--AGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSG 228 (346)
Q Consensus 160 v~~G~~l~~~~~~---------~~P~v~~~~~~--~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~ 228 (346)
+..|..|....+. ..|.++|+..+ .+.|+|+|.|||+|.+.
T Consensus 29 f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~DpDaP~g~---------------------------- 80 (183)
T PRK09818 29 IKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTGS---------------------------- 80 (183)
T ss_pred ccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEECCCCCCCC----------------------------
Confidence 4566666654322 47899998644 46899999999998532
Q ss_pred ccccCCCCCCCCceeeEEEEEeecCCCC--c------------cCC-------cccccccCCCCCCCCCCccEEEEEeee
Q psy11040 229 YIDFTEPYSSNTVKGFLHWLVVNIQGSD--I------------HSG-------KVLAEYIGSGPPLGTGLHRYIFYVFKQ 287 (346)
Q Consensus 229 ~~~~~~p~~~~~~~~~~hw~~~n~~~~~--~------------~~~-------~~~~~Y~~P~Pp~gsg~HRYvflLf~Q 287 (346)
.+.||++.||+.+. + ..+ +....|.||+||.|.|.|||+|.||.-
T Consensus 81 --------------~~~HWvv~nIP~~~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyAL 146 (183)
T PRK09818 81 --------------GWWHWTVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWAL 146 (183)
T ss_pred --------------cEEEEEEEcCCCCccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEe
Confidence 48999999998542 1 011 224689999999999999999999998
Q ss_pred C-CCCCc
Q psy11040 288 T-GYIDF 293 (346)
Q Consensus 288 ~-~~~~~ 293 (346)
. ..+++
T Consensus 147 d~~~l~l 153 (183)
T PRK09818 147 KTDKIPV 153 (183)
T ss_pred cCcccCC
Confidence 7 44544
No 12
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.10 E-value=2.4e-10 Score=102.30 Aligned_cols=89 Identities=27% Similarity=0.541 Sum_probs=65.2
Q ss_pred eecCCcccCcccc----cCCCeEEEec--CCCceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEeecCcccc
Q psy11040 159 KVSLGNELTPTSV----KDEPTVTWDA--EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDF 232 (346)
Q Consensus 159 ~v~~G~~l~~~~~----~~~P~v~~~~--~~~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~ 232 (346)
.+..|+.+....+ ...|.++|+. +..+.|+|+|.|||||++.
T Consensus 29 ~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~DpDAP~g~-------------------------------- 76 (174)
T COG1881 29 AFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVDDPDAPTGG-------------------------------- 76 (174)
T ss_pred hhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEECCCCCCCC--------------------------------
Confidence 4445555544433 3467788985 4567899999999998543
Q ss_pred CCCCCCCCceeeEEEEEeecCCCC--c-----c----------CCcccccccCCCCCCCCCCccEEEEEeeeCCC
Q psy11040 233 TEPYSSNTVKGFLHWLVVNIQGSD--I-----H----------SGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGY 290 (346)
Q Consensus 233 ~~p~~~~~~~~~~hw~~~n~~~~~--~-----~----------~~~~~~~Y~~P~Pp~gsg~HRYvflLf~Q~~~ 290 (346)
.|+||++.||+... + . ..+.-..|.||+||.|+| |||.|.||.++-.
T Consensus 77 ----------~~~HWvv~nIp~~~~~~~~~~~~~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~-HrY~f~vyALd~~ 140 (174)
T COG1881 77 ----------GWVHWVVANIPADVTELPEGSGPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVYALDVE 140 (174)
T ss_pred ----------cEEEEEEEccCCcccccccccccccccceEEeeccccccCcccCCCCCCCC-eEEEEEEEEcccc
Confidence 59999999998521 1 0 113345699999999999 9999999999864
No 13
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.01 E-value=2.3e-09 Score=93.00 Aligned_cols=91 Identities=34% Similarity=0.663 Sum_probs=67.0
Q ss_pred CCCeEEEecC--CCceeEEEeecCcCCCceeEeeccCCCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEEe
Q psy11040 173 DEPTVTWDAE--PAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVV 250 (346)
Q Consensus 173 ~~P~v~~~~~--~~~~ytl~m~DpD~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~~ 250 (346)
..|.++|+.- ..+.|+|+|.|+|+|.+. .+.||++.
T Consensus 14 ~SP~l~w~~~P~~t~s~al~~~D~Dap~~~------------------------------------------~~~HWv~~ 51 (141)
T TIGR00481 14 ISPPLSWDGVPEGAKSLALTCIDPDAPTGC------------------------------------------GWWHWVVV 51 (141)
T ss_pred CCcEEEEcCCCCCceEEEEEEECCCCCCCC------------------------------------------CeEEEEEe
Confidence 4788999863 346899999999998532 38999999
Q ss_pred ecCCCC--c----c-------CC--------cccccccCCCCCCCCCCccEEEEEeeeCCC-CCcCCCCCCCCCCCCCCC
Q psy11040 251 NIQGSD--I----H-------SG--------KVLAEYIGSGPPLGTGLHRYIFYVFKQTGY-IDFTEPYSSNTSAEGRLG 308 (346)
Q Consensus 251 n~~~~~--~----~-------~~--------~~~~~Y~~P~Pp~gsg~HRYvflLf~Q~~~-~~~~~~~~~~~~~~~R~~ 308 (346)
||+.+. + . .+ +....|.||+||.|+ |||+|.||..... +++. .+
T Consensus 52 nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y~GP~PP~g~--HrY~f~vyALd~~~l~l~------------~~ 117 (141)
T TIGR00481 52 NIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGYIGPCPPKGD--HRYLFTVYALDTEKLDLD------------PG 117 (141)
T ss_pred cCCCCcccccCCccccccccCCcceeEeeccCCCccEeCCCCcCCC--EEEEEEEEEecCCCCCCC------------CC
Confidence 998631 1 1 01 125799999999986 9999999999865 6542 25
Q ss_pred cChHHHHHHhC
Q psy11040 309 FSTQNFADKYK 319 (346)
Q Consensus 309 F~~~~F~~~~~ 319 (346)
+...++.++..
T Consensus 118 ~~~~~l~~ai~ 128 (141)
T TIGR00481 118 FSLADLGDAME 128 (141)
T ss_pred CCHHHHHHHHh
Confidence 67777766654
No 14
>PLN00169 CETS family protein; Provisional
Probab=98.65 E-value=1.1e-08 Score=91.87 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=62.7
Q ss_pred ceeEEEeec--C---cCCCceeEeeccCCCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEEeecCCCCccC
Q psy11040 185 GTYTLIMSG--S---DIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHS 259 (346)
Q Consensus 185 ~~ytl~m~D--p---D~p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~~n~~~~~~~~ 259 (346)
+.|++||+- + +...|+++++|.+|.|+ +|.|||||+||+|++.+++..+ .....++...|...+..+.++++
T Consensus 83 ~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp--~G~HRYvflly~Q~~~~~~~~~-~~R~~F~~~~Fa~~~~L~~PvA~ 159 (175)
T PLN00169 83 REYLHWLVTDIPATTGATFGQEVVCYESPRPT--AGIHRFVFVLFRQLGRQTVYAP-GWRQNFNTRDFAELYNLGSPVAA 159 (175)
T ss_pred ccEEEEEEeCCccccccccCccceeecCCCCC--CCceeEEEEEEEcCCCcccCCc-ccCCCcCHHHHHHHhCCCCceEE
Confidence 347777742 1 22467889999999997 5899999999999988776433 12344566777777888899999
Q ss_pred CcccccccCCC
Q psy11040 260 GKVLAEYIGSG 270 (346)
Q Consensus 260 ~~~~~~Y~~P~ 270 (346)
++++++|.+-.
T Consensus 160 nfF~a~~~~~~ 170 (175)
T PLN00169 160 VYFNCQRESGS 170 (175)
T ss_pred EEEEEecCCcC
Confidence 99999998733
No 15
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=98.37 E-value=1.4e-07 Score=82.29 Aligned_cols=38 Identities=58% Similarity=1.138 Sum_probs=33.6
Q ss_pred CCceeEeeccCCCCCCCCCcceEEEEEEeecCccccCC
Q psy11040 197 HSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTE 234 (346)
Q Consensus 197 p~~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~~~ 234 (346)
..+..+++|.+|.|+.|+|.|||+|+||+|+..+++..
T Consensus 81 ~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~ 118 (154)
T cd00866 81 SKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPE 118 (154)
T ss_pred CCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccc
Confidence 45678999999999999999999999999998877643
No 16
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=97.68 E-value=8.1e-05 Score=64.16 Aligned_cols=34 Identities=41% Similarity=0.949 Sum_probs=27.8
Q ss_pred ceeEeeccCCCCCCCCCcceEEEEEEeecCcccc
Q psy11040 199 GKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDF 232 (346)
Q Consensus 199 ~~~~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~ 232 (346)
+++++.|.+|.|+.|+|.|||+|+||+|+...++
T Consensus 84 g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l 117 (146)
T PF01161_consen 84 GQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPL 117 (146)
T ss_dssp SEEEES--SB-SSTTSSCEEEEEEEEEESSSSTS
T ss_pred CccccEEcCCcCcCcCCCceEEEEEEEcCCCCCC
Confidence 6679999999999999999999999999985554
No 17
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=97.39 E-value=4.9e-05 Score=67.12 Aligned_cols=51 Identities=31% Similarity=0.490 Sum_probs=36.0
Q ss_pred eeccCCCCCCCCCcceEEEEEEeecCccccCCCCCCCCceeeEEEEEeecC
Q psy11040 203 AEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQ 253 (346)
Q Consensus 203 ~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~~~p~~~~~~~~~~hw~~~n~~ 253 (346)
+.|.+|.|+.|+|.|||+|+||.|+...++..........+.+.++..++.
T Consensus 99 ~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL 149 (159)
T cd00457 99 TVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVL 149 (159)
T ss_pred cCCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCee
Confidence 399999999999999999999999987765421011233455555555443
No 18
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=93.83 E-value=0.06 Score=46.94 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=27.3
Q ss_pred EeeccCCCCCCCCCcceEEEEEEeecCcccc
Q psy11040 202 LAEYIGSGPPLGTGLHRYIFYVFKQSGYIDF 232 (346)
Q Consensus 202 ~~~Y~~p~p~~gtg~hr~vfll~~q~~~~~~ 232 (346)
.+.|.+|.|+. +|.|||+|.||.+...++.
T Consensus 94 ~~~Y~gP~Pp~-~~~HrY~f~vyAld~~l~~ 123 (150)
T cd00865 94 EAGYGGPCPPD-GGPHRYVFTVYALDVPLLL 123 (150)
T ss_pred CCeecCCCCcC-CCceEEEEEEEEeCCccCC
Confidence 57999999999 9999999999999987765
No 19
>PRK09818 putative kinase inhibitor; Provisional
Probab=92.76 E-value=0.085 Score=47.85 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=23.4
Q ss_pred eeccCCCCCCCCCcceEEEEEEeec
Q psy11040 203 AEYIGSGPPLGTGLHRYIFYVFKQS 227 (346)
Q Consensus 203 ~~Y~~p~p~~gtg~hr~vfll~~q~ 227 (346)
..|.||.|+.|.|.|||+|.||.-.
T Consensus 123 ~gY~GP~PP~G~g~HrY~F~vyALd 147 (183)
T PRK09818 123 AGFGGACPPKGDKPHHYQFKVWALK 147 (183)
T ss_pred CceECCCCccCCCCEEEEEEEEEec
Confidence 5899999999999999999999876
No 20
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=91.03 E-value=0.24 Score=43.94 Aligned_cols=31 Identities=45% Similarity=0.671 Sum_probs=26.0
Q ss_pred EeeccCCCCCCCCCcceEEEEEEeecC-ccccC
Q psy11040 202 LAEYIGSGPPLGTGLHRYIFYVFKQSG-YIDFT 233 (346)
Q Consensus 202 ~~~Y~~p~p~~gtg~hr~vfll~~q~~-~~~~~ 233 (346)
...|.||-|+.|. .|||+|.||.... .+++.
T Consensus 100 ~~gY~GP~PP~g~-~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 100 KAGYGGAAPPKGE-THRYIFTVHALDVERIDVD 131 (158)
T ss_pred CccCcCCCCccCC-CceEEEEEEEecCcccCCC
Confidence 3679999999997 6999999999984 56653
No 21
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=90.29 E-value=0.24 Score=44.66 Aligned_cols=26 Identities=42% Similarity=0.772 Sum_probs=23.4
Q ss_pred eccCCCCCCCCCcceEEEEEEeecCcc
Q psy11040 204 EYIGSGPPLGTGLHRYIFYVFKQSGYI 230 (346)
Q Consensus 204 ~Y~~p~p~~gtg~hr~vfll~~q~~~~ 230 (346)
.|.||-||.|.| |||.|.||..+...
T Consensus 116 ~Y~Gp~PP~g~~-HrY~f~vyALd~~~ 141 (174)
T COG1881 116 GYGGPCPPKGHG-HRYYFTVYALDVEL 141 (174)
T ss_pred CcccCCCCCCCC-eEEEEEEEEccccc
Confidence 499999999999 99999999998643
No 22
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=89.29 E-value=0.41 Score=41.49 Aligned_cols=30 Identities=40% Similarity=0.820 Sum_probs=25.7
Q ss_pred EeeccCCCCCCCCCcceEEEEEEeecCc-cccC
Q psy11040 202 LAEYIGSGPPLGTGLHRYIFYVFKQSGY-IDFT 233 (346)
Q Consensus 202 ~~~Y~~p~p~~gtg~hr~vfll~~q~~~-~~~~ 233 (346)
...|.+|.|+.|. |||+|.||..... +++.
T Consensus 85 ~~~Y~GP~PP~g~--HrY~f~vyALd~~~l~l~ 115 (141)
T TIGR00481 85 KSGYIGPCPPKGD--HRYLFTVYALDTEKLDLD 115 (141)
T ss_pred CccEeCCCCcCCC--EEEEEEEEEecCCCCCCC
Confidence 3689999999997 9999999999865 6654
No 23
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=81.69 E-value=2.6 Score=34.18 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=67.4
Q ss_pred HHHhhhhhhhhhcCCchhhHHHHHHHHHhcc--CCCchhHHHhhhhhhhhhhhhhhhhccCCCc-hhHHHHHHHHHHhhh
Q psy11040 57 YKQQRKGLHRAVIGLDEKFTKKLVAFIAKHI--DVPQYFDVLSQTTYIIIDVLEEMIDSGLSPS-GSLVSILQRLARRIK 133 (346)
Q Consensus 57 eL~~R~~L~~AL~gRde~~l~piL~fl~k~i--~dpr~~~~L~~va~~iLDiYe~~~~~~l~~S-~~l~~~~~~L~~kvf 133 (346)
|=+....++.++..-+...+.++|.|+...+ .+++..+.++.+...++-.-. ..+..+ +.+...+..|.+.+.
T Consensus 11 ~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~----~~l~~~~~~~~~~L~~L~~~l~ 86 (110)
T PF04003_consen 11 ERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHG----SYLSSSSPELRPVLRSLQKILR 86 (110)
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHH
Confidence 3445678889999999999999999999955 699999999999999999773 334444 667777788888777
Q ss_pred cccccccchhhc
Q psy11040 134 SEQESVRDLLEL 145 (346)
Q Consensus 134 ~e~~IiPDVl~~ 145 (346)
+...-+++++..
T Consensus 87 ~~~~~l~~l~~~ 98 (110)
T PF04003_consen 87 ERLQNLSKLLDL 98 (110)
T ss_pred HHHHHHHHHHHH
Confidence 777777766643
No 24
>KOG2733|consensus
Probab=58.98 E-value=11 Score=38.03 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=39.4
Q ss_pred hhhhhhhhhcCCchhhHHHHHHHHHhcc--------------CCCchhHHHhhhhhhhhh
Q psy11040 60 QRKGLHRAVIGLDEKFTKKLVAFIAKHI--------------DVPQYFDVLSQTTYIIID 105 (346)
Q Consensus 60 ~R~~L~~AL~gRde~~l~piL~fl~k~i--------------~dpr~~~~L~~va~~iLD 105 (346)
.+..+.-|++||+++.|+.+|.++.+-- .|+..+..++.-+.++++
T Consensus 30 ~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~vivN 89 (423)
T KOG2733|consen 30 VFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARVIVN 89 (423)
T ss_pred cccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEEEEe
Confidence 4788999999999999999999998543 568888888888888885
No 25
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=43.02 E-value=31 Score=29.14 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHhc---cCCCchhHHHhhhhhhhhhhhhhhhhccCCCchhHHHHHHHHHHhhhccc
Q psy11040 73 EKFTKKLVAFIAKH---IDVPQYFDVLSQTTYIIIDVLEEMIDSGLSPSGSLVSILQRLARRIKSEQ 136 (346)
Q Consensus 73 e~~l~piL~fl~k~---i~dpr~~~~L~~va~~iLDiYe~~~~~~l~~S~~l~~~~~~L~~kvf~e~ 136 (346)
..-|.|+..|+..+ +.+..-.+.+..+...+.+-|-..+.+.+......++.+++|.+......
T Consensus 38 ~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~evL~sv~KtEeSL~rlkk~~~~~~ 104 (125)
T PF12022_consen 38 SSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIASEVLTSVRKTEESLKRLKKRRKRTS 104 (125)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45678888898877 77777788888888888999988888877655567888888877644333
No 26
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=28.13 E-value=1.4e+02 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=49.1
Q ss_pred cchhhhHHHHHH----hh-----hhhhhhhcCCchhhHHHHHHHHHhccCCCchhHHHhhhhhhhhhhhhh
Q psy11040 48 PVLVDHQSTYKQ----QR-----KGLHRAVIGLDEKFTKKLVAFIAKHIDVPQYFDVLSQTTYIIIDVLEE 109 (346)
Q Consensus 48 ~~~~~~~~~eL~----~R-----~~L~~AL~gRde~~l~piL~fl~k~i~dpr~~~~L~~va~~iLDiYe~ 109 (346)
|.-...++++++ .. ..|...+.+-++..+..+|+|+..=.++.|++.+.-.+.++++-.+..
T Consensus 26 P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~~ 96 (141)
T PF08625_consen 26 PFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHVAQRVLNAILKSHPP 96 (141)
T ss_pred cHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCCH
Confidence 334445556666 12 358899999999999999999999999999998888888888876644
Done!