RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11040
(346 letters)
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase
inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A*
1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Length = 190
Score = 146 bits (369), Expect = 5e-43
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 39/195 (20%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPT-VTWDAEPAGT-YTLIMSGSDIHSGKVLAEYIGSG 209
+ Y + LG LTPT V + P+ ++WD G YTL+++ D S
Sbjct: 30 VDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPS----------- 78
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGS 269
+ + H+LVVN++G+DI SG VL+EY+GS
Sbjct: 79 --------------------------RKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGS 112
Query: 270 GPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFY 329
GPP TGLHRY++ V++Q ++ EP SN S + R F ++F KY LG+PVAG +
Sbjct: 113 GPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCF 172
Query: 330 LAQYDNYVPILHRQF 344
A++D+ VP LH Q
Sbjct: 173 QAEWDDSVPKLHDQL 187
Score = 68.5 bits (167), Expect = 7e-14
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
S + R F ++F KY LG+PVAG + A++DD VP LH Q
Sbjct: 145 SGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPKLHDQL 187
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical
shift variations, titration, unknown function; NMR
{Drosophila melanogaster}
Length = 179
Score = 143 bits (362), Expect = 6e-42
Identities = 72/197 (36%), Positives = 101/197 (51%), Gaps = 42/197 (21%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPTVTWDAEPAGT--YTLIMSGSDIHSGKVLAEYIGSG 209
++Y ++ +V GNELTPT VKD+P V+W + TL+M D +
Sbjct: 19 VIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPT----------- 67
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIH--SGKVLAEYI 267
+ LHW VVNI GS+ + G LA+Y+
Sbjct: 68 --------------------------RQDPKYREILHWSVVNIPGSNENPSGGHSLADYV 101
Query: 268 GSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGN 327
GSGPP TGLHRYIF +++Q I+ P SNT+ GRL F+ ++FA K+ LG P+A N
Sbjct: 102 GSGPPKDTGLHRYIFLLYRQENKIEE-TPTISNTTRTGRLNFNARDFAAKHGLGEPIAAN 160
Query: 328 FYLAQYDNYVPILHRQF 344
+Y AQYD+YVPI ++
Sbjct: 161 YYQAQYDDYVPIRNKTI 177
Score = 68.8 bits (168), Expect = 4e-14
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 2 KISAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQF 46
+ GRL F+ ++FA K+ LG P+A N+Y AQYDDYVPI ++
Sbjct: 133 NTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNKTI 177
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 124 bits (311), Expect = 4e-34
Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 39/200 (19%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPTVTWD----------------AEPAGTYTLIMSGSD 195
+ Y +++ V++GN L + +P + + +TL+M+ D
Sbjct: 39 VEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPD 98
Query: 196 IHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGS 255
S + H + +
Sbjct: 99 APSK--------TDHKWSEFCHLVECDL-----------KLLNEATHETSGATEFFASEF 139
Query: 256 DIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTE---PYSSNTSAEGRLGFSTQ 312
+ L EY+G PP G+G HRY+F ++KQ +D ++ G
Sbjct: 140 NTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVG 199
Query: 313 NFADKYKLGSPVAGNFYLAQ 332
+A + L VA NF+ A+
Sbjct: 200 KWAKENNLQ-LVASNFFYAE 218
Score = 44.3 bits (104), Expect = 2e-05
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQ 34
G +A + L VA NF+ A+
Sbjct: 189 WGYGTPATGVGKWAKENNLQ-LVASNFFYAE 218
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI,
protein structure initiative; HET: MSE; 1.30A
{Plasmodium vivax} PDB: 2r77_A
Length = 200
Score = 123 bits (309), Expect = 6e-34
Identities = 34/196 (17%), Positives = 53/196 (27%), Gaps = 51/196 (26%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPT-VTWDAEPAGT--YTLIMSGSDIHSGKVLAEYIGS 208
I + + +V+ GN L P + + EP Y L M D S
Sbjct: 41 ISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPS---------- 90
Query: 209 GPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSG-----KVL 263
+ ++HW V I+ ++ G L
Sbjct: 91 ---------------------------RRRPDGRDYVHWAVSGIKSKELVKGTDKNCITL 123
Query: 264 AEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAE---GRLGFSTQNFADKYKL 320
Y+G GTGLHR F + E R+ F+ A
Sbjct: 124 LPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAYNVIQ 183
Query: 321 GS---PVAGNFYLAQY 333
+ V N+ +
Sbjct: 184 MNDMKIVGFNWCQMRR 199
Score = 33.8 bits (77), Expect = 0.049
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 4 SAEGRLGFSTQNFADKYKLGS---PVAGNFYLAQY 35
R+ F+ A + V N+ +
Sbjct: 165 HYITRVKFNNCQSAYNVIQMNDMKIVGFNWCQMRR 199
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein;
1.80A {Arabidopsis thaliana} PDB: 1qou_A
Length = 180
Score = 117 bits (294), Expect = 5e-32
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 47/190 (24%)
Query: 151 MIVYPNNSKVSLGNELTPTSVKDEPTVTW-DAEPAGTYTLIMSGSDIHSGKVLAEYIGSG 209
M V N +VS G+EL P+SV +P V + +TL+M D+
Sbjct: 34 MNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPG----------- 82
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQG-SDIHSGKVLAEYIG 268
S +K LHW+V NI G +D GK + Y
Sbjct: 83 --------------------------PSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYE- 115
Query: 269 SGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNF 328
P G+HR++F +F+Q + R F+T+ FA +Y LG PVA F
Sbjct: 116 -LPRPSIGIHRFVFVLFRQKQ------RRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVF 168
Query: 329 YLAQYDNYVP 338
+ AQ +
Sbjct: 169 FNAQRETAAR 178
Score = 62.7 bits (152), Expect = 7e-12
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVP 40
+ R F+T+ FA +Y LG PVA F+ AQ +
Sbjct: 142 NIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAAR 178
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein,
14-3-3 protein, BZ protein, floral induction; HET: SEP;
2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Length = 170
Score = 109 bits (273), Expect = 5e-29
Identities = 50/186 (26%), Positives = 74/186 (39%), Gaps = 48/186 (25%)
Query: 151 MIVYPNNSKVSLGNELTPTSVKDEPTVTWDAEPAGT-YTLIMSGSDIHSGKVLAEYIGSG 209
+ V + VS G EL P+ V +P V T YTL+M D S
Sbjct: 30 LKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSP---------- 79
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHS-GKVLAEYIG 268
S ++ +LHWLV +I G+ S G+ + Y
Sbjct: 80 ---------------------------SDPNLREYLHWLVTDIPGTTAASFGQEVMSYES 112
Query: 269 SGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNF 328
P G+HR +F +F+Q G P R F+T++FA+ Y LGSPVA +
Sbjct: 113 PRPT--MGIHRLVFVLFQQLGRQTVYAP-------GWRQNFNTKDFAELYNLGSPVAAVY 163
Query: 329 YLAQYD 334
+ +Q +
Sbjct: 164 FNSQRE 169
Score = 50.7 bits (121), Expect = 6e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYD 36
+ R F+T++FA+ Y LGSPVA ++ +Q +
Sbjct: 137 APGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta
protein, unknown function; 1.81A {Escherichia coli}
SCOP: b.17.1.2
Length = 166
Score = 41.3 bits (97), Expect = 1e-04
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 21/67 (31%)
Query: 240 TVKGFLHWLVVNI--------QGSDIHSGKVLAE-------------YIGSGPPLGTGLH 278
T G+ HW VVNI + G L + G+ PP G H
Sbjct: 59 TGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPH 118
Query: 279 RYIFYVF 285
Y F V+
Sbjct: 119 HYQFKVW 125
Score = 35.5 bits (82), Expect = 0.010
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 205 YIGSGPPLGTGLHRYIFYVF 224
+ G+ PP G H Y F V+
Sbjct: 106 FGGACPPKGDKPHHYQFKVW 125
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic
homolog RAF kinase inhibitor protein (RKIP). csgid
structural genomics; 1.25A {Chlamydia trachomatis}
Length = 153
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 230 IDFTEPYSSNTVKGFLHWLVVNI--------QGSDIHSGKVL-----AEYIGSGPPLGTG 276
D P S ++HW+V N+ +G+ I + + L Y PP
Sbjct: 49 EDPDVPPSVREDGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPPCPPDAK- 107
Query: 277 LHRYIFYVF 285
HRY FY +
Sbjct: 108 -HRYYFYAY 115
Score = 28.5 bits (64), Expect = 1.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 209 GPPLGTGLHRYIFYVF 224
P HRY FY +
Sbjct: 100 PPCPPDAKHRYYFYAY 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 38/236 (16%), Positives = 67/236 (28%), Gaps = 89/236 (37%)
Query: 138 SVRDLLELQGALQMIVYPNNSKVSLGNELTPTS-------VKDE-----PTVT----WDA 181
S R L G+L+ L L PT+ ++++ P T D
Sbjct: 5 STRPLTLSHGSLE---------HVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 182 EPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTV 241
EP + ++ +++G YV EP
Sbjct: 53 EPT---------TPAE---LVGKFLG--------------YV------SSLVEPSKVGQF 80
Query: 242 KGFLHWLVVN------IQGSDIHSGKVLAEYIGSGPPLGTGLHRYI--FYVFKQTGYIDF 293
L+ L + ++G+DIH+ + A+ + I + + F
Sbjct: 81 DQVLN-LCLTEFENCYLEGNDIHA--LAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 294 TEPYSS---NTSAEGRLGFSTQNFADKYKLGSPVAGNF--YLAQ----YDNYVPIL 340
+ +S EG F G GN Y + Y Y ++
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAI-FG-----GQ---GNTDDYFEELRDLYQTYHVLV 184
Score = 38.1 bits (88), Expect = 0.004
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 35/118 (29%)
Query: 40 PILHRQFMPVLVD-HQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHIDVPQYF----- 93
+F+PV H S L A +++ K V+F AK I +P Y
Sbjct: 414 LKFSNRFLPVASPFH-SHL------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 94 DVLSQTTYI---IIDVLEEM---------------IDSGLSPSGSLVSILQRLARRIK 133
D+ + I I+D + + +D G P G S L L R K
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--PGG--ASGLGVLTHRNK 520
Score = 35.8 bits (82), Expect = 0.022
Identities = 40/230 (17%), Positives = 63/230 (27%), Gaps = 94/230 (40%)
Query: 67 AVIGLDEKFTKKLVAFIAKHIDVPQYFDV---L--SQTTYIIIDVLEEMIDSGLSPSGSL 121
++ L ++ + V H +P V L ++ SG P SL
Sbjct: 340 SISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAKNLVV---------SG--PPQSL 386
Query: 122 VSILQRLAR----------RIKSEQESVR--------------------------DL--- 142
+ L + RI + ++ DL
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 143 -LELQGA-LQMIVY-PNNSKV--SLGNELTPTSVKD---EPTVTWDAEPAGTYTLIMS-G 193
+ +Q+ VY + L ++ V P V W+ T I+ G
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQFKATHILDFG 505
Query: 194 SDIHSGKVLAEYIGSGPPL------GTGLHRYIF-----------YVFKQ 226
SG +G L GTG+ R I Y FKQ
Sbjct: 506 PGGASG------LG---VLTHRNKDGTGV-RVIVAGTLDINPDDDYGFKQ 545
Score = 28.9 bits (64), Expect = 2.9
Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 37/117 (31%)
Query: 68 VIGLDEKFTKKLVAF--IAKHIDVPQYFDVLSQTTYIII-------------DVLEEMID 112
V+ ++ ++V + + + VP+ D L ++ Y +I + L+ +++
Sbjct: 1776 VMSIES--LVEVVFYRGMTMQVAVPR--DELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 113 SGLSPSGSLVSI------------------LQRLARRIKSEQESVRDLLELQGALQM 151
+G LV I L + + + D++ELQ +L +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>1ncq_C Coat protein VP3; HRV, pleconaril, icosahedral virus; HET: W11;
2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_3*
1hrv_3* 1hri_3* 1na1_C* 1k5m_C* 1r08_3* 1r09_3* 1rmu_3
1ruc_3* 1rud_3* 1rue_3* 1ruf_3 1rug_3* 1ruh_3* 1rui_3*
1ruj_3 1rvf_3 1vrh_3* 2hwb_3* 2hwc_3* ...
Length = 236
Score = 32.3 bits (73), Expect = 0.16
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT---GLHRYIFYVFKQSGYIDFTEPYSSNT 240
++L+ +G + S K++ Y G+ P L ++ + I T P++S
Sbjct: 113 FSLMYTGPALSSAKLILAYTPPGARGPQDRREAMLGTHVVWDIGLQSTIVMTIPWTSGV 171
Score = 31.5 bits (71), Expect = 0.33
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 220 IFYVFKQSGYIDFTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPP 272
+F G F V+ + HW + G + S K++ Y G+ P
Sbjct: 80 VFGTNLFIGDGVFKTTLLGEIVQYYTHWSGSLRFSLMYTGPALSSAKLILAYTPPGARGP 139
Query: 273 LGT---GLHRYIFYVFKQTGYIDFTEPYSSNT 301
L ++ + I T P++S
Sbjct: 140 QDRREAMLGTHVVWDIGLQSTIVMTIPWTSGV 171
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB
family, lipid binding protein; HET: MSE EPE; 1.66A
{Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Length = 159
Score = 31.4 bits (71), Expect = 0.25
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 21/72 (29%)
Query: 234 EPYSSNTVKGFLHWLVVNIQ-------------GSDIHSGKV-------LAEYIGSGPPL 273
+ T G+ HW+VVN+ + G + Y G+ PP
Sbjct: 52 YDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPK 111
Query: 274 GTGLHRYIFYVF 285
G HRYIF V
Sbjct: 112 GET-HRYIFTVH 122
>3cji_B Polyprotein; virus capsid protein structure, ATP-binding,
cytoplasm, cytoplasmic vesicle, helicase, hydrolase,
membrane, nucleotide-binding; 2.30A {Seneca valley
virus}
Length = 239
Score = 31.6 bits (71), Expect = 0.33
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 186 TYTLIMSGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYVFKQSGY---IDFTEPYSSNT 240
TL G + GK L Y P Y G F PY S +
Sbjct: 116 QITLTFCGPMMARGKFLLSYSPPNGTQPQTLSEAMQCTYSIWDIGLNSSWTFVVPYISPS 175
Query: 241 VKGFLHWLVVNIQGSDIHS 259
+ + ++S
Sbjct: 176 -----DYRETRAITNSVYS 189
Score = 31.2 bits (70), Expect = 0.40
Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 10/95 (10%)
Query: 217 HRYIFYVFKQSGYIDFTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GS 269
R + + F ++ + + G + GK L Y
Sbjct: 81 DRPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFLLSYSPPNG 140
Query: 270 GPPLGTGLHRYIFYVFKQTGY---IDFTEPYSSNT 301
P Y G F PY S +
Sbjct: 141 TQPQTLSEAMQCTYSIWDIGLNSSWTFVVPYISPS 175
>1bev_3 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus
VG-5-27, picornavirus, icosahedral virus; HET: MYR;
3.00A {Bovine enterovirus} SCOP: b.121.4.1
Length = 242
Score = 30.8 bits (69), Expect = 0.50
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT---GLHRYIFYVFKQSGYIDFTEPYSSNT 240
T + +G+ + +GKVL Y G P L ++ + F I P+ S +
Sbjct: 115 ITCMFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISAS 173
Score = 29.6 bits (66), Expect = 1.4
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 232 FTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPPLGT---GLHRYI 281
+ K + W + G+ + +GKVL Y G P L ++
Sbjct: 94 LSSSLLGTLAKHYTQWSGSVEITCMFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHV 153
Query: 282 FYVFKQTGYIDFTEPYSSNT 301
+ F I P+ S +
Sbjct: 154 IWDFGLQSSITLVIPWISAS 173
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation,
crystallography, phosphorylation, sigma factor,
sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP:
c.13.2.1 PDB: 1h4z_A 1h4y_A
Length = 117
Score = 29.6 bits (67), Expect = 0.58
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 97 SQTTYIIIDVLEEM--IDS-GLSPSGSLVSILQRLARR-----IKSEQESVRDLLELQGA 148
T II + E + +DS G+ G ++ ++ L + + ++R + + G
Sbjct: 40 GAVTTIIWN-FERLSFMDSSGV---GLVLGRMRELEAVAGRTILLNPSPTMRKVFQFSGL 95
Query: 149 LQMIVYPN 156
++
Sbjct: 96 GPWMMDAT 103
>2ws9_3 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_3 2xbo_3*
Length = 226
Score = 30.4 bits (68), Expect = 0.62
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 10/94 (10%)
Query: 218 RYIFYVFKQSGYIDFTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSG 270
+F + + Y ++ F + G+ K L ++ S
Sbjct: 71 EPLFQMDVSLSAAELHGTYVASLSSFFAQYRGSLNFNFIFTGAAATKAKFLVAFVPPHSA 130
Query: 271 PPLGTGLHRYIFYVFKQTGY---IDFTEPYSSNT 301
P + G F PYSS
Sbjct: 131 APKTRDEAMACIHAVWDVGLNSAFSFNVPYSSPA 164
Score = 30.4 bits (68), Expect = 0.65
Identities = 18/125 (14%), Positives = 30/125 (24%), Gaps = 23/125 (18%)
Query: 139 VRDLLEL-QGALQMIVYPNNSKVSLGNELTPTSVKDEPTVTWDAEPAGTY---------- 187
+ +++ + + N + AE GTY
Sbjct: 40 FTNFIDVAKQTYSFCSISGKPYFEVTNTSGDEPLFQMDVSLSAAELHGTYVASLSSFFAQ 99
Query: 188 -------TLIMSGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYVFKQSGY---IDFTEP 235
I +G+ K L ++ S P + G F P
Sbjct: 100 YRGSLNFNFIFTGAAATKAKFLVAFVPPHSAAPKTRDEAMACIHAVWDVGLNSAFSFNVP 159
Query: 236 YSSNT 240
YSS
Sbjct: 160 YSSPA 164
>1aym_3 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_3*
1c8m_3* 1d3e_3 1ncr_C* 1nd2_C* 1nd3_C* 1qju_3* 1qjx_3*
1qjy_3* 1r1a_3* 2hwd_3* 2hwe_3* 2hwf_3* 1fpn_3* 1v9u_3*
3dpr_C* 3tn9_3
Length = 238
Score = 30.4 bits (68), Expect = 0.64
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT---GLHRYIFYVFKQSGYIDFTEPYSSNT 240
++ + G+ + KVL Y G G P L ++ + + P+ S +
Sbjct: 115 FSFMFCGTANTTLKVLLAYTPPGIGKPRSRKEAMLGTHVVWDVGLQSTVSLVVPWISAS 173
Score = 29.2 bits (65), Expect = 1.6
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 232 FTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPPLGT---GLHRYI 281
F HW G+ + KVL Y G G P L ++
Sbjct: 94 LATTLIGEIASYFTHWTGSLRFSFMFCGTANTTLKVLLAYTPPGIGKPRSRKEAMLGTHV 153
Query: 282 FYVFKQTGYIDFTEPYSSNT 301
+ + P+ S +
Sbjct: 154 VWDVGLQSTVSLVVPWISAS 173
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A
{Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A*
2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Length = 361
Score = 30.5 bits (68), Expect = 0.91
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 31 YLAQYDDYVPILHRQF----------MPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLV 80
+ Y YV +R + +D + + + + L+ F K L+
Sbjct: 249 FKETYLPYVLPAYRAVYARFSGEPALIDRALDEARAVGTRDEHVRAGLTALERVF-KVLL 307
Query: 81 AFIAKHIDVPQYFDVLSQTTYIIIDVLEEMIDSGLSPSGSLVSILQRL 128
F A H+ + + + I SG L +L
Sbjct: 308 RFRAPHLKLAER--------AYEVGQSGPEIGSGGYAPSMLGELLTLT 347
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics,
northeast structural genomics CON PSI-biology, structure
genomics, unknown function; NMR {Rhizobium etli}
Length = 160
Score = 29.7 bits (67), Expect = 0.92
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 175 PTVTWDAEPAGTYTLIMSGSDIHSGKVL 202
+ EP G Y + ++G+ G
Sbjct: 40 TEAEVEPEPGGLYLVNVTGARFARGSFR 67
>1qqp_3 FMDV, protein (genome polyprotein); heparan sulphate,
virus-receptor interactions/protein carbohydrate
interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth
disease virus} SCOP: b.121.4.1 PDB: 1fod_3 1bbt_3*
1fmd_3 1qgc_3 1zba_3* 1zbe_3
Length = 220
Score = 29.7 bits (66), Expect = 1.1
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYVFKQSGY---IDFTEPYSSNT 240
+ +G + + Y G PP + + +G F+ PY S
Sbjct: 107 LHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAA 165
Score = 29.7 bits (66), Expect = 1.3
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 232 FTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV 284
+ + + + + + L G + + Y G PP + +
Sbjct: 86 MSNTFLAGLAQYYTQYSGTINLHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHA 145
Query: 285 FKQTGY---IDFTEPYSSNT 301
TG F+ PY S
Sbjct: 146 EWDTGLNSKFTFSIPYLSAA 165
>1d4m_3 Protein (coxsackievirus A9); picornavirus structure, RGD,
uncoating, virus-receptor interaction, WIN compound,
virus/viral protein; HET: MYR W71; 2.90A {Human
coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_C* 1upn_C
2c8i_C 2x5i_C* 3iyp_B* 1m11_3 1cov_3* 1jew_3 1oop_C*
1mqt_C*
Length = 238
Score = 29.6 bits (66), Expect = 1.1
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV---FKQSGYIDFTEPYSSNT 240
T + GS + +GK L Y G+ PP ++ P+ S T
Sbjct: 116 LTFVFCGSAMATGKFLIAYSPPGANPPKTRKDAMLGTHIIWDIGLQSSCVLCVPWISQT 174
Score = 28.1 bits (62), Expect = 4.2
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 232 FTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV 284
F + + HW L GS + +GK L Y G+ PP ++
Sbjct: 95 FKHTLLGEILNYYAHWSGSMKLTFVFCGSAMATGKFLIAYSPPGANPPKTRKDAMLGTHI 154
Query: 285 ---FKQTGYIDFTEPYSSNT 301
P+ S T
Sbjct: 155 IWDIGLQSSCVLCVPWISQT 174
>1hxs_3 Genome polyprotein, coat protein VP3; picornavirus, AB initio phase
DETE icosahedral virus; HET: MYR PLM; 2.20A {Human
poliovirus 1} SCOP: b.121.4.1 PDB: 1pov_3* 1ar6_3*
1ar7_3* 1ar8_3* 1ar9_3* 1asj_3* 1po1_3* 1po2_3* 1al2_3*
1vbd_3* 2plv_3* 3epc_3* 1dgi_3 1nn8_3* 3iyb_3 3iyc_3
1eah_3* 3epf_3* 1pvc_3* 1piv_3* ...
Length = 237
Score = 29.6 bits (66), Expect = 1.2
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT---GLHRYIFYVFKQSGYIDFTEPYSSNT 240
+T + GS + +GK+L Y G+ PP L ++ + P+ SNT
Sbjct: 116 FTFLFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNT 174
Score = 28.5 bits (63), Expect = 2.6
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 232 FTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV 284
+ + + HW GS + +GK+L Y G+ PP +V
Sbjct: 95 LSHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHV 154
Query: 285 FKQTGY---IDFTEPYSSNT 301
G P+ SNT
Sbjct: 155 IWDIGLQSSCTMVVPWISNT 174
>1tme_3 Theiler'S murine encephalomyelitis virus (subunit VP3); icosahedral
virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_3
Length = 236
Score = 29.6 bits (66), Expect = 1.4
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT---GLHRYIFYVFKQSGYIDFTEPYSSNT 240
+ + +G+ + GK L Y G+G P Y + + FT P+ S T
Sbjct: 111 FLFVFTGAAMVKGKFLIAYTPPGAGKPTTRDQAMQATYAIWDLGLNSSFVFTAPFISPT 169
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 29.5 bits (66), Expect = 1.7
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 145 LQGALQMIVYPNNSKVSLGNELTPTSVKDEPT------VTWDAEPAGTYTLIMSGSDIHS 198
L L +++ N +GN+ T + V +A +GTYT+ + ++
Sbjct: 364 LVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFINAPQSGTYTIEVQAYNVPV 423
Query: 199 G 199
G
Sbjct: 424 G 424
>2mev_3 Mengo virus coat protein (subunit VP3); cardio picornavirus coat
protein, icosahedral virus; 3.00A {Mengo virus} SCOP:
b.121.4.1 PDB: 1mec_3
Length = 231
Score = 28.8 bits (64), Expect = 2.6
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT---GLHRYIFYVFKQSGYIDFTEPYSSNT 240
YT + +G+ + GK L Y G+G P Y + + FT P+ S T
Sbjct: 110 YTFVFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPT 168
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 27.8 bits (62), Expect = 2.9
Identities = 9/51 (17%), Positives = 12/51 (23%)
Query: 44 RQFMPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHIDVPQYFD 94
R F P+L D S + D + H D
Sbjct: 42 RGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPY 92
>3vbh_C EV71, genome polyprotein, vapsid protein VP3; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_C* 3vbs_C* 3vbo_C 3vbr_C 3vbu_C 4aed_C* 4agy_C
4agx_C
Length = 242
Score = 28.5 bits (63), Expect = 2.9
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV---FKQSGYIDFTEPYSSNT 240
T + +GS + +GK+L Y G P +V F + P+ SNT
Sbjct: 117 VTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNT 175
Score = 27.3 bits (60), Expect = 6.2
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 232 FTEPYSSNTVKGFLHW-----LVVNIQGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV 284
+ + W + GS + +GK+L Y G P +V
Sbjct: 96 WQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAYTPPGGPLPKDRATAMLGTHV 155
Query: 285 ---FKQTGYIDFTEPYSSNT 301
F + P+ SNT
Sbjct: 156 IWDFGLQSSVTLVIPWISNT 175
>4eq9_A ABC transporter substrate-binding protein-amino A transport;
structural genomics, niaid; HET: GSH; 1.40A
{Streptococcus pneumoniae}
Length = 246
Score = 28.0 bits (63), Expect = 3.9
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 10/45 (22%)
Query: 230 IDFTEPYSSNTVKGFLHWLVVNIQGSDIHS-----GKVLAEYIGS 269
+ P + N LVV S I S GK +
Sbjct: 85 YLYAAPIAQNPNV-----LVVKKDDSSIKSLDDIGGKSTEVVQAT 124
>1ev1_3 Echovirus 1; viral coat protein, capsid, picornavirus, icosahedral
virus; HET: MYR PLM; 3.55A {Human echovirus 1} SCOP:
b.121.4.1
Length = 239
Score = 27.8 bits (61), Expect = 4.5
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGTGLHRYIFYV---FKQSGYIDFTEPYSSNT 240
T + GS + +GK L Y G+G P +V P+ S T
Sbjct: 117 ITFVFCGSAMTTGKFLLSYAPPGAGAPKTRKDAMLGTHVVWDVGLQSSCVLCIPWISQT 175
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 27.0 bits (60), Expect = 5.3
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 44 RQFMPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHIDVPQYFD 94
R F P L+D + ++ K +I DE + + D
Sbjct: 44 RAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPFED 93
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer,
structural genomics, PSI, prote structure initiative;
HET: MSE; 2.59A {Helicobacter pylori}
Length = 207
Score = 27.3 bits (60), Expect = 6.5
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 35/77 (45%)
Query: 242 KGFLHWLVVNI-----------------QGSDIHSGKVLAE----------------YIG 268
F+HW+V NI QG + + + YIG
Sbjct: 89 MPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIG 148
Query: 269 SGPPLGTGLHRYIFYVF 285
PP G H Y+ V+
Sbjct: 149 PMPPNGD--HHYLIQVY 163
Score = 26.9 bits (59), Expect = 8.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 205 YIGSGPPLGTGLHRYIFYVF 224
YIG PP G H Y+ V+
Sbjct: 146 YIGPMPPNGD--HHYLIQVY 163
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 26.8 bits (59), Expect = 6.6
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 89 VPQYFDVLSQTT-----YIIIDVLEEMIDSGLSPSGSLVSILQRLARRIKSEQESV 139
+ +YF + + Y + V++EM +G S +L++L +S+
Sbjct: 91 LNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQL-----LMLQSL 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 7.3
Identities = 47/352 (13%), Positives = 97/352 (27%), Gaps = 70/352 (19%)
Query: 34 QYDDYVPILHRQFM-------------PVL----VDHQSTYKQQRKGLHRAVIGLDEKFT 76
QY D + + F+ +L +DH K G R L K
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 77 KKLVAFIAKHIDVPQYFDVLS--QTTYIIIDVLEEMIDSGLSPSGSLVSILQRLARRIKS 134
+ + F+ + + Y ++S +T ++ M + + +
Sbjct: 77 EMVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 135 EQESVRD-LLELQGALQMIVY--PNNSKVSLGNELTPTSVKDEPTVTWDAEPAGTYTLIM 191
+R LLEL+ A +++ + K + + + L +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQ--CKMDFKIFWLNL 189
Query: 192 SGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFL------ 245
+ VL L L I + ++++ L
Sbjct: 190 -KNCNSPETVLE-------MLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 246 ----HWLVV--NIQGS------DIHSGKVLA--EYIGSGPPLGTGLHRYIFYVFKQTGYI 291
+ L+V N+Q + ++ K+L + L +I
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMT-- 297
Query: 292 DFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVA----GNF---YLAQYDNY 336
T + + L Q+ + +P LA +DN+
Sbjct: 298 -LTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
>1ihm_A Capsid protein; beta-barrel, EF-TU-like domain caliciviridae, T=3
icosahedra icosahedral virus; 3.40A {Norwalk virus}
SCOP: b.121.4.3
Length = 530
Score = 27.5 bits (60), Expect = 7.3
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 187 YTLIMSGSDIHSGKVLAEYI--GSGPPLGT----GLHRYIFYVFKQSGYIDFTEPYSSNT 240
++++G+ +GK++ I G G T L ++ + I+ N
Sbjct: 109 VRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQATLFPHVIADVRTLDPIEVPLEDVRNV 168
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 26.6 bits (58), Expect = 8.1
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 79 LVAFIAKHIDV-PQYFDVLSQTTYI-----IIDVLEEMIDSGLSPSGSLVSILQRLAR-- 130
+ I +++++ +YF + + I +L+E + G S S+L+ + +
Sbjct: 80 TLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQAD 139
Query: 131 RIKSEQESVRDLLELQG 147
++ E ES R +LE G
Sbjct: 140 LLQEEDESPRSVLEEMG 156
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 26.9 bits (60), Expect = 8.9
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 230 IDFTEPYSSNTVKGFLHWLVVNIQGSDIHS-----GKVLAEYIGS 269
D +EPYS + ++V S+I S G A+ + S
Sbjct: 135 FDKSEPYSWSGA------VLVAHNDSNIKSIADIKGVKTAQSLTS 173
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 26.7 bits (59), Expect = 9.0
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 44 RQFMPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHI-------------DVP 90
R F P LV+ + K + DE+ A+ AK +
Sbjct: 64 RGFTPQLVEFYEKHHDS-KNFEIILASWDEE-EDDFNAYYAKMPWLSIPFANRNIVEALT 121
Query: 91 QYFDVLSQTTYIIID 105
+ + V S T I ++
Sbjct: 122 KKYSVESIPTLIGLN 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.405
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,397,065
Number of extensions: 330280
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 74
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)