RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11040
(346 letters)
>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein,
PEBP {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 167 bits (423), Expect = 2e-51
Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 39/194 (20%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPT-VTWDA-EPAGTYTLIMSGSDIHSGKVLAEYIGSG 209
+ Y LG LTPT VK+ PT +TWD +P YTL+++ D S
Sbjct: 26 VKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPS----------- 74
Query: 210 PPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHSGKVLAEYIGS 269
+ + H+LVVN++G++I SG VL++Y+GS
Sbjct: 75 --------------------------RKDPKYREWHHFLVVNMKGNNISSGTVLSDYVGS 108
Query: 270 GPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAGNFY 329
GPP GTGLHRY++ V++Q G + EP SN S + R F +F KY+LG+PVAG Y
Sbjct: 109 GPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCY 168
Query: 330 LAQYDNYVPILHRQ 343
A++D+YVP L+ Q
Sbjct: 169 QAEWDDYVPKLYEQ 182
Score = 67.7 bits (165), Expect = 4e-14
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 2 KISAEGRLGFSTQNFADKYKLGSPVAGNFYLAQYDDYVPILHRQ 45
S + R F +F KY+LG+PVAG Y A++DDYVP L+ Q
Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPKLYEQ 182
>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 219
Score = 122 bits (306), Expect = 8e-34
Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 39/200 (19%)
Query: 152 IVYPNNSKVSLGNELTPTSVKDEPTVTWD----------------AEPAGTYTLIMSGSD 195
+ Y +++ V++GN L + +P + + +TL+M+ D
Sbjct: 38 VEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPD 97
Query: 196 IHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGS 255
S + H ++ +
Sbjct: 98 APSK--------TDHKWSEFCH-----------LVECDLKLLNEATHETSGATEFFASEF 138
Query: 256 DIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQTGYIDFTE---PYSSNTSAEGRLGFSTQ 312
+ L EY+G PP G+G HRY+F ++KQ +D ++ G
Sbjct: 139 NTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVG 198
Query: 313 NFADKYKLGSPVAGNFYLAQ 332
+A + L VA NF+ A+
Sbjct: 199 KWAKENNLQ-LVASNFFYAE 217
Score = 43.6 bits (102), Expect = 1e-05
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 2 KISAEGRLGFSTQNFADKYKLGSPVAGNFYLAQ 34
G +A + L VA NF+ A+
Sbjct: 186 PNWGYGTPATGVGKWAKENNLQ-LVASNFFYAE 217
>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
(Antirrhinum majus) [TaxId: 4151]}
Length = 164
Score = 109 bits (274), Expect = 9e-30
Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 48/186 (25%)
Query: 152 IVYPNNSK---VSLGNELTPTSVKDEPTVTW-DAEPAGTYTLIMSGSDIHSGKVLAEYIG 207
++Y +N+ V G+EL P++V P V + +TLIM+ D+
Sbjct: 19 VIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGP-------- 70
Query: 208 SGPPLGTGLHRYIFYVFKQSGYIDFTEPYSSNTVKGFLHWLVVNIQGSDIHS-GKVLAEY 266
S P L LHW+V +I G+ S GK + Y
Sbjct: 71 SDPYLRE-----------------------------HLHWIVTDIPGTTDSSFGKEVVSY 101
Query: 267 IGSGPPLGTGLHRYIFYVFKQTGYIDFTEPYSSNTSAEGRLGFSTQNFADKYKLGSPVAG 326
P G+HR++F +FKQ + R GF+T+ F + +LG PVA
Sbjct: 102 --EMPRPNIGIHRFVFLLFKQKKR----GQAMLSPPVVCRDGFNTRKFTQENELGLPVAA 155
Query: 327 NFYLAQ 332
F+ Q
Sbjct: 156 VFFNCQ 161
Score = 47.7 bits (113), Expect = 2e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 4 SAEGRLGFSTQNFADKYKLGSPVAGNFYLAQ 34
R GF+T+ F + +LG PVA F+ Q
Sbjct: 131 PVVCRDGFNTRKFTQENELGLPVAAVFFNCQ 161
>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
[TaxId: 562]}
Length = 165
Score = 37.7 bits (87), Expect = 7e-04
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 21/64 (32%)
Query: 243 GFLHWLVVNI--------QGSDIHSGKVLAE-------------YIGSGPPLGTGLHRYI 281
G+ HW VVNI + G L + G+ PP G H Y
Sbjct: 61 GWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQ 120
Query: 282 FYVF 285
F V+
Sbjct: 121 FKVW 124
Score = 32.4 bits (73), Expect = 0.041
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 180 DAEPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVF 224
DA L + A + G+ PP G H Y F V+
Sbjct: 80 DAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 124
>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 31.9 bits (72), Expect = 0.063
Identities = 30/131 (22%), Positives = 41/131 (31%), Gaps = 61/131 (46%)
Query: 175 PTVTWDAEPAGTYTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHRYIFYVFKQSGYIDFTE 234
P + WD PAGT + +++ D + P G+
Sbjct: 33 PHLAWDDVPAGTKSFVVTCYDPDA------------PTGS-------------------- 60
Query: 235 PYSSNTVKGFLHWLVVNIQGS------DIHSGKVL--------------AEYIGSGPPLG 274
G+ HW+VVN+ SG V Y G+ PP G
Sbjct: 61 --------GWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKG 112
Query: 275 TGLHRYIFYVF 285
HRYIF V
Sbjct: 113 -ETHRYIFTVH 122
>d1tme3_ b.121.4.1 (3:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 232
Score = 31.3 bits (71), Expect = 0.11
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 27/129 (20%)
Query: 139 VRDLLELQGALQMIVYPNNSKVSLGNELTPTSVKDEPTVTWDAEPAGT------------ 186
DLLEL + PN++ SV V + + +
Sbjct: 41 FSDLLELCKLPTFLGNPNSNNKRYPYFSATNSVPTTSLVDYQVALSCSCMCNSMLAAVAR 100
Query: 187 ----------YTLIMSGSDIHSGKVLAEYI--GSGPPLG-TGLHRYIFYVF--KQSGYID 231
+ + +G+ + GK L Y G+G P + + ++ +
Sbjct: 101 NFNQYRGSLNFLFVFTGAAMVKGKFLIAYTPPGAGKPTTRDQAMQATYAIWDLGLNSSFV 160
Query: 232 FTEPYSSNT 240
FT P+ S T
Sbjct: 161 FTAPFISPT 169
>d1ncqc_ b.121.4.1 (C:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 236
Score = 29.0 bits (65), Expect = 0.63
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYIGSGPPLGTGL---HRYIFYVF--KQSGYIDFTEPYSSNT 240
++L+ +G + S K++ Y G V+ I T P++S
Sbjct: 113 FSLMYTGPALSSAKLILAYTPPGARGPQDRREAMLGTHVVWDIGLQSTIVMTIPWTSGV 171
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 27.1 bits (60), Expect = 1.0
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 104 IDVLEEMIDSGLSPSGSLVSILQRLARRIKSEQESVRDLLELQGALQM 151
L + + S S IL + I+ + + L+
Sbjct: 21 FHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 231
Score = 28.6 bits (64), Expect = 1.0
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 30/130 (23%)
Query: 139 VRDLLELQGALQMIVYPNNSKVSLGNELTPTSVKDEPTVTWDAEPAGT------------ 186
+D LE+ I + V E + T+VK +P + + +
Sbjct: 41 YKDFLEIAQIPTFIGNKVPNAVP-YIEASNTAVKTQPLAVYQVTLSCSCLANTFLAALSR 99
Query: 187 ----------YTLIMSGSDIHSGKVLAEYIGSGPPLGTGL------HRYIFYVFKQSGYI 230
YT + +G+ + GK L Y G T I+ + S
Sbjct: 100 NFAQYRGSLVYTFVFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSS-Y 158
Query: 231 DFTEPYSSNT 240
FT P+ S T
Sbjct: 159 SFTVPFISPT 168
>d1aym3_ b.121.4.1 (3:) Rhinovirus coat proteins {Human rhinovirus
16, (HRV-16) [TaxId: 31708]}
Length = 238
Score = 28.3 bits (63), Expect = 1.2
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYIGSGPPLGTGL---HRYIFYVF--KQSGYIDFTEPYSSNT 240
++ + G+ + KVL Y G V+ + P+ S +
Sbjct: 115 FSFMFCGTANTTLKVLLAYTPPGIGKPRSRKEAMLGTHVVWDVGLQSTVSLVVPWISAS 173
>d1bev3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 242
Score = 27.9 bits (62), Expect = 1.5
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHR-----YIFYVFKQSGYIDFTEPYSSNT 240
T + +G+ + +GKVL Y G + ++ + F I P+ S +
Sbjct: 115 ITCMFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISAS 173
>d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 388
Score = 28.2 bits (62), Expect = 1.5
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 34 QYDDYVPILHRQFMPVLVDHQSTYKQQRKGLHRAVIGLDEKFTKKLVAFIAKHID 88
+D + + + TY H VIG+D + + AF + +
Sbjct: 331 GSNDRIVPYDGTLKKGVWNDMGTYNV----DHLEVIGVDPNPSFNIRAFYLRLAE 381
>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 235
Score = 27.5 bits (61), Expect = 2.1
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 187 YTLIMSGSDIHSGKVLAEYIGSGPPLGTGL------HRYIFYVFKQSGYIDFTEPYSSNT 240
+T + GS + +GK+L Y G T I+ + QS P+ SN
Sbjct: 116 FTFLFCGSMMATGKILVAYAPPGAQPPTSRKEAMLGTHVIWDLGLQSS-CTMVVPWISNV 174
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 27.5 bits (61), Expect = 2.5
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYI---GSGPPLGTGLHRYIFYVF--KQSGYIDFTEPYSSNT 240
T + GS + +GK L Y P V+ P+ S T
Sbjct: 117 ITFVFCGSAMTTGKFLLSYAPPGAGAPKTRKDAMLGTHVVWDVGLQSSCVLCIPWISQT 175
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR,
N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Length = 100
Score = 26.0 bits (57), Expect = 2.7
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 103 IIDVLEEMIDSGLSPSGSLVSILQRLARRIKSEQESVR---DLLELQGALQMI 152
+ +I SG G + + + + ++V +L+ +G +
Sbjct: 14 VATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 66
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 26.8 bits (59), Expect = 2.8
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 88 DVPQYFDVLSQTT-----YIIIDVLEEMIDSGLSPSGSLVSILQRLA 129
+ +YF + + Y + V++EM +G S +L++L
Sbjct: 90 VLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
>d1qqp3_ b.121.4.1 (3:) Aphthovirus (Foot-and-mouth disease virus)
coat proteins {FMDV (Foot-and-mouth disease virus),
strain bfs, 1860 [TaxId: 12110]}
Length = 220
Score = 27.1 bits (60), Expect = 2.8
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 187 YTLIMSGSDIHSGKVLAEYIGSGPPLGTGLHR-----YIFYVFKQSGYIDFTEPYSSNT 240
+ +G + + Y G + + + F+ PY S
Sbjct: 107 LHFMFTGPTDAKARYMVAYAPPGMEPPKTPEAAAHCIHAEWDTGLNSKFTFSIPYLSAA 165
>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43,
C-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 116
Score = 26.4 bits (58), Expect = 2.9
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 143 LELQGALQMIVYPNNSKVSLGNELTPTSVKDEPTVTWDAEPAGTYTLIMSGSDIHSG 199
L + N+ + + V +A +GTYT+ + ++ G
Sbjct: 52 LVITAPNGTQYVGNDFTSPYND--NWDGRNNVENVFINAPQSGTYTIEVQAYNVPVG 106
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus
subtilis [TaxId: 1423]}
Length = 78
Score = 24.8 bits (54), Expect = 4.7
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 103 IIDVLEEMIDSGLSPSGSLVSILQRLARRIKSEQESVR---DLLELQGALQMI 152
I +E I+ G + +L+ L + + + ++ +LLE +GA+ +
Sbjct: 3 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.405
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,306,372
Number of extensions: 62242
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 30
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)