Query psy11043
Match_columns 217
No_of_seqs 274 out of 1445
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:39:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 99.8 6.4E-22 2.2E-26 160.1 2.9 142 40-207 6-159 (164)
2 1au7_A Protein PIT-1, GHF-1; c 99.8 1.3E-19 4.5E-24 143.9 2.7 133 45-205 1-145 (146)
3 1e3o_C Octamer-binding transcr 99.7 6.6E-19 2.2E-23 141.8 3.4 138 42-205 2-159 (160)
4 3d1n_I POU domain, class 6, tr 99.7 1.5E-18 5E-23 138.4 2.7 132 45-204 2-150 (151)
5 3l1p_A POU domain, class 5, tr 99.7 1.9E-18 6.6E-23 138.4 2.7 130 45-205 8-154 (155)
6 3a01_A Homeodomain-containing 99.7 4.4E-17 1.5E-21 119.9 4.4 68 137-213 16-83 (93)
7 1zq3_P PRD-4, homeotic bicoid 99.6 4.8E-17 1.6E-21 112.9 3.4 62 140-210 4-65 (68)
8 2cue_A Paired box protein PAX6 99.6 6.6E-17 2.3E-21 115.6 4.2 63 139-210 8-70 (80)
9 1ig7_A Homeotic protein MSX-1; 99.6 5.3E-17 1.8E-21 109.0 2.9 55 141-204 3-57 (58)
10 1puf_A HOX-1.7, homeobox prote 99.6 1.1E-16 3.6E-21 113.8 4.5 62 138-208 13-74 (77)
11 1ftt_A TTF-1 HD, thyroid trans 99.6 3.7E-17 1.3E-21 113.5 1.8 61 140-209 4-64 (68)
12 2hdd_A Protein (engrailed home 99.6 4.2E-17 1.4E-21 110.8 1.9 55 141-204 6-60 (61)
13 2h1k_A IPF-1, pancreatic and d 99.6 7E-17 2.4E-21 110.4 2.9 57 140-205 5-61 (63)
14 1akh_A Protein (mating-type pr 99.6 3E-17 1E-21 111.3 1.0 57 138-203 5-61 (61)
15 2dmu_A Homeobox protein goosec 99.6 8.5E-17 2.9E-21 112.1 3.2 60 139-207 8-67 (70)
16 1nk2_P Homeobox protein VND; h 99.6 1.2E-16 4.2E-21 113.4 4.0 63 138-209 9-71 (77)
17 1fjl_A Paired protein; DNA-bin 99.6 1.1E-16 3.7E-21 114.7 3.6 63 136-207 16-78 (81)
18 2dmq_A LIM/homeobox protein LH 99.6 1.5E-16 5.2E-21 113.6 3.8 62 139-209 8-69 (80)
19 2ecc_A Homeobox and leucine zi 99.6 1.9E-16 6.5E-21 112.3 4.1 56 152-207 8-63 (76)
20 1jgg_A Segmentation protein EV 99.6 1.1E-16 3.8E-21 108.3 2.7 56 141-205 4-59 (60)
21 2da3_A Alpha-fetoprotein enhan 99.6 1.4E-16 4.9E-21 113.5 3.5 61 137-206 16-76 (80)
22 3a03_A T-cell leukemia homeobo 99.6 2.4E-16 8.2E-21 105.3 4.1 53 153-205 3-55 (56)
23 1bw5_A ISL-1HD, insulin gene e 99.6 5.6E-17 1.9E-21 111.8 1.0 58 140-206 5-62 (66)
24 2vi6_A Homeobox protein nanog; 99.6 4.6E-17 1.6E-21 110.9 0.5 57 140-205 5-61 (62)
25 2dmt_A Homeobox protein BARH-l 99.6 1.1E-16 3.9E-21 114.4 2.5 62 136-206 15-76 (80)
26 3a02_A Homeobox protein arista 99.6 7.2E-17 2.4E-21 109.2 1.3 53 154-206 6-58 (60)
27 2dms_A Homeobox protein OTX2; 99.6 1.1E-16 3.8E-21 114.4 2.3 62 138-208 7-68 (80)
28 2cra_A Homeobox protein HOX-B1 99.6 7.1E-17 2.4E-21 112.6 1.2 59 139-206 8-66 (70)
29 2e1o_A Homeobox protein PRH; D 99.6 2.1E-16 7.2E-21 110.2 3.4 58 141-207 10-67 (70)
30 2da2_A Alpha-fetoprotein enhan 99.6 9.4E-17 3.2E-21 111.9 1.6 59 139-206 8-66 (70)
31 2da1_A Alpha-fetoprotein enhan 99.6 8.9E-17 3.1E-21 112.0 1.5 60 138-206 7-66 (70)
32 1puf_B PRE-B-cell leukemia tra 99.6 1.2E-16 4.3E-21 112.2 2.2 58 153-210 7-67 (73)
33 1yz8_P Pituitary homeobox 2; D 99.6 5.8E-17 2E-21 112.4 0.2 60 139-207 4-63 (68)
34 1x2n_A Homeobox protein pknox1 99.6 2.7E-16 9.3E-21 110.4 3.3 54 154-207 14-70 (73)
35 1k61_A Mating-type protein alp 99.6 3E-16 1E-20 106.1 3.4 53 152-204 3-58 (60)
36 2m0c_A Homeobox protein arista 99.6 7.4E-17 2.5E-21 113.6 0.4 63 138-209 9-71 (75)
37 2l7z_A Homeobox protein HOX-A1 99.6 2.2E-16 7.4E-21 111.1 2.6 59 140-207 9-67 (73)
38 1ahd_P Antennapedia protein mu 99.6 1.9E-16 6.6E-21 109.9 2.1 58 141-207 5-62 (68)
39 3rkq_A Homeobox protein NKX-2. 99.6 2.1E-16 7.1E-21 105.8 2.2 54 141-203 5-58 (58)
40 2kt0_A Nanog, homeobox protein 99.6 1.1E-16 3.9E-21 115.2 0.9 62 136-206 20-81 (84)
41 2djn_A Homeobox protein DLX-5; 99.6 9.8E-17 3.4E-21 111.9 0.5 60 138-206 7-66 (70)
42 1du6_A PBX1, homeobox protein 99.6 1.5E-16 5.1E-21 108.9 1.3 55 141-204 6-63 (64)
43 2k40_A Homeobox expressed in E 99.6 2.2E-16 7.7E-21 109.1 2.2 58 141-207 4-61 (67)
44 2dmn_A Homeobox protein TGIF2L 99.6 3.4E-16 1.2E-20 112.9 3.0 57 153-209 13-72 (83)
45 2da4_A Hypothetical protein DK 99.6 1.9E-16 6.4E-21 113.2 1.3 60 138-206 8-71 (80)
46 1b72_B Protein (PBX1); homeodo 99.6 3.1E-16 1E-20 113.7 2.3 58 153-210 7-67 (87)
47 3k2a_A Homeobox protein MEIS2; 99.6 6.5E-16 2.2E-20 107.1 3.3 56 152-207 3-61 (67)
48 1uhs_A HOP, homeodomain only p 99.6 1.5E-15 5.1E-20 106.4 4.9 56 152-207 6-62 (72)
49 2hi3_A Homeodomain-only protei 99.6 7.8E-16 2.7E-20 108.2 3.3 55 153-207 8-63 (73)
50 3nau_A Zinc fingers and homeob 99.6 8.9E-16 3E-20 105.7 3.5 52 155-206 12-63 (66)
51 1b8i_A Ultrabithorax, protein 99.6 4.5E-16 1.5E-20 111.6 1.9 58 139-205 21-78 (81)
52 1b72_A Protein (homeobox prote 99.6 8.1E-16 2.8E-20 113.9 2.8 59 140-207 36-94 (97)
53 2lk2_A Homeobox protein TGIF1; 99.6 1.4E-15 4.9E-20 110.8 3.9 59 151-209 9-70 (89)
54 2cuf_A FLJ21616 protein; homeo 99.6 1E-15 3.6E-20 112.8 3.0 63 138-209 7-84 (95)
55 2r5y_A Homeotic protein sex co 99.6 7.8E-16 2.7E-20 111.9 2.0 58 139-205 29-86 (88)
56 1wh5_A ZF-HD homeobox family p 99.5 4.2E-16 1.4E-20 111.7 0.4 59 137-204 16-78 (80)
57 1mnm_C Protein (MAT alpha-2 tr 99.5 1.2E-15 4.1E-20 110.7 2.5 51 153-203 33-86 (87)
58 2ecb_A Zinc fingers and homeob 99.5 1E-15 3.4E-20 111.9 2.0 57 153-209 17-73 (89)
59 2cqx_A LAG1 longevity assuranc 99.5 9.5E-16 3.3E-20 107.7 1.8 45 161-205 22-67 (72)
60 2ly9_A Zinc fingers and homeob 99.5 3.3E-15 1.1E-19 105.0 3.4 56 152-207 11-66 (74)
61 2da5_A Zinc fingers and homeob 99.5 3E-15 1E-19 105.8 2.8 56 153-208 13-68 (75)
62 1le8_B Mating-type protein alp 99.5 3.7E-15 1.2E-19 107.3 3.2 53 154-206 9-64 (83)
63 2da6_A Hepatocyte nuclear fact 99.5 5.8E-15 2E-19 110.1 3.7 63 138-209 6-89 (102)
64 2dn0_A Zinc fingers and homeob 99.5 3.5E-15 1.2E-19 105.6 2.0 56 152-207 13-68 (76)
65 3nar_A ZHX1, zinc fingers and 99.5 4.1E-15 1.4E-19 109.9 1.7 58 141-207 28-85 (96)
66 2e19_A Transcription factor 8; 99.5 3.7E-15 1.3E-19 102.4 1.3 51 154-204 10-60 (64)
67 1wh7_A ZF-HD homeobox family p 99.5 1.8E-15 6E-20 108.5 -0.4 57 138-204 17-78 (80)
68 2l9r_A Homeobox protein NKX-3. 99.5 2.6E-15 9E-20 104.7 0.4 53 155-207 12-64 (69)
69 2dmp_A Zinc fingers and homeob 99.5 6.6E-15 2.3E-19 107.4 2.1 57 153-209 19-75 (89)
70 1wi3_A DNA-binding protein SAT 99.5 1.4E-14 4.9E-19 99.9 3.0 56 137-201 6-62 (71)
71 1x2m_A LAG1 longevity assuranc 99.5 5.7E-15 1.9E-19 101.4 0.8 46 159-204 12-58 (64)
72 1lfb_A Liver transcription fac 99.4 8E-15 2.7E-19 109.1 -0.3 62 136-206 7-89 (99)
73 2d5v_A Hepatocyte nuclear fact 99.4 2.2E-14 7.7E-19 115.4 0.1 60 139-207 98-157 (164)
74 2da7_A Zinc finger homeobox pr 99.3 4.9E-13 1.7E-17 92.7 3.2 45 157-201 15-59 (71)
75 1ic8_A Hepatocyte nuclear fact 99.2 7.2E-13 2.4E-17 109.6 -2.4 60 136-204 113-193 (194)
76 2h8r_A Hepatocyte nuclear fact 99.1 7.6E-12 2.6E-16 104.9 1.4 59 135-202 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.1 2E-11 6.8E-16 109.1 1.5 52 152-203 370-421 (421)
78 2nzz_A Penetratin conjugated G 98.3 5.7E-08 1.9E-12 59.2 0.1 21 189-209 1-21 (37)
79 2ys9_A Homeobox and leucine zi 95.7 0.0065 2.2E-07 41.7 2.7 38 160-197 19-56 (70)
80 3lph_A Protein REV; helix-loop 79.9 0.9 3.1E-05 31.0 2.0 38 158-209 17-54 (72)
81 2x7l_M HIV REV; nuclear export 74.3 0.72 2.5E-05 34.2 0.3 38 158-209 14-51 (115)
82 3hug_A RNA polymerase sigma fa 42.9 19 0.00063 24.5 3.0 50 153-207 37-86 (92)
83 2lni_A Stress-induced-phosphop 40.8 76 0.0026 20.9 6.9 62 27-94 13-74 (133)
84 2m0n_A Putative uncharacterize 38.5 1.1E+02 0.0036 22.5 6.6 47 28-80 41-96 (112)
85 3mzy_A RNA polymerase sigma-H 35.8 23 0.0008 25.7 2.8 49 153-207 109-157 (164)
86 2glo_A Brinker CG9653-PA; prot 32.2 16 0.00054 22.9 1.1 21 177-197 28-48 (59)
87 2o8x_A Probable RNA polymerase 30.1 31 0.0011 21.6 2.3 47 153-204 15-61 (70)
88 1hlv_A CENP-B, major centromer 29.9 23 0.0008 25.4 1.8 45 154-201 8-52 (131)
89 2xi8_A Putative transcription 29.5 13 0.00045 22.9 0.3 23 177-199 17-39 (66)
90 2r1j_L Repressor protein C2; p 28.8 14 0.00047 22.9 0.3 24 177-200 21-44 (68)
91 1zug_A Phage 434 CRO protein; 27.3 15 0.00052 23.0 0.3 24 177-200 19-42 (71)
92 3bd1_A CRO protein; transcript 27.0 13 0.00046 24.3 0.0 23 177-199 14-36 (79)
93 2rgt_A Fusion of LIM/homeobox 26.4 3.9 0.00013 31.6 -3.3 94 57-174 66-163 (169)
94 1tc3_C Protein (TC3 transposas 26.4 16 0.00053 20.9 0.2 22 177-198 24-45 (51)
95 2kvr_A Ubiquitin carboxyl-term 24.8 41 0.0014 25.1 2.4 24 176-199 71-94 (130)
96 1jko_C HIN recombinase, DNA-in 24.5 18 0.00061 21.0 0.3 23 177-199 24-46 (52)
97 1adr_A P22 C2 repressor; trans 24.2 19 0.00064 22.8 0.3 24 177-200 21-44 (76)
98 1r69_A Repressor protein CI; g 23.7 19 0.00066 22.3 0.3 24 177-200 17-40 (69)
99 1s7o_A Hypothetical UPF0122 pr 23.5 62 0.0021 23.2 3.1 48 153-205 22-69 (113)
100 2b5a_A C.BCLI; helix-turn-heli 23.5 20 0.00069 22.8 0.4 23 177-199 26-48 (77)
101 1ku3_A Sigma factor SIGA; heli 22.9 49 0.0017 21.2 2.3 47 153-203 10-59 (73)
102 3b7h_A Prophage LP1 protein 11 22.0 23 0.00077 22.6 0.4 23 177-199 23-45 (78)
103 1p4w_A RCSB; solution structur 21.2 45 0.0015 23.4 1.9 43 153-201 34-76 (99)
104 1rp3_A RNA polymerase sigma fa 21.0 60 0.002 25.1 2.8 49 152-205 186-234 (239)
105 1rzs_A Antirepressor, regulato 20.4 30 0.001 21.8 0.7 19 177-195 13-31 (61)
106 2a6c_A Helix-turn-helix motif; 20.3 26 0.0009 23.1 0.5 23 177-199 34-56 (83)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.83 E-value=6.4e-22 Score=160.12 Aligned_cols=142 Identities=21% Similarity=0.299 Sum_probs=98.6
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHHHhhccCCCCCcc----------hhHHHHH
Q psy11043 40 LEESGDIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMYSILEHYKFTKDS----------HGKLQAM 109 (217)
Q Consensus 40 l~~~g~~~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~~lLe~~~f~~~~----------~~~lq~l 109 (217)
..++.+++.|..|...+... |+.+.|+++++..++..|.+..|+... +..+..+
T Consensus 6 ~~~~~~~~~l~~fa~~fk~~----------------ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~kl 69 (164)
T 2xsd_C 6 DEDAPSSDDLEQFAKQFKQR----------------RIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKL 69 (164)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------------HHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHH----------------HhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHc
Confidence 35678999999999887653 788999999999999999999988543 3334445
Q ss_pred H--HHhhhHHHHHhcCCCCCCccccccccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Q psy11043 110 W--LEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLT 187 (217)
Q Consensus 110 w--~~a~y~~~e~~~g~~l~~~~k~r~rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt 187 (217)
| ++.++.+++...+.+ +.+++....++.+++||.|+..+.. .|+.+|..++||+..++..||..+||+
T Consensus 70 kPlL~~wl~eae~~~~~~-~~~~~~~~~~~~rr~Rt~ft~~Ql~---------~LE~~F~~~~yp~~~~r~~LA~~l~L~ 139 (164)
T 2xsd_C 70 KPLLNKWLEETDSSSGSP-TNLDKIAAQGRKRKKRTSIEVGVKG---------ALESHFLKCPKPSAHEITGLADSLQLE 139 (164)
T ss_dssp HHHHHHHHHHHCC------------------------CCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCC
T ss_pred chhHHHHHhhhccccCCC-cccccccccccCCCCceeccHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHHCCC
Confidence 4 566677777665554 3344444445556678887777766 999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHh
Q psy11043 188 PTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 188 ~~qV~~WFqNrR~R~kr~~~ 207 (217)
+.||++||||||+|+|+...
T Consensus 140 ~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 140 KEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp HHHHHHHHHHHHHHHTBSCC
T ss_pred hhhhhhhhHHhhHHHhhccC
Confidence 99999999999999997543
No 2
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.76 E-value=1.3e-19 Score=143.89 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=92.1
Q ss_pred CHHHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHHHhhccCCCCCcc----------hhHHHH--HHHH
Q psy11043 45 DIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMYSILEHYKFTKDS----------HGKLQA--MWLE 112 (217)
Q Consensus 45 ~~~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~~lLe~~~f~~~~----------~~~lq~--lw~~ 112 (217)
+++.|..|...+... |+.+.|.+++++.++..|.+..|+.+. +..+.+ -+++
T Consensus 1 ~~~~l~~fa~~~k~~----------------ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~ 64 (146)
T 1au7_A 1 GMRALEQFANEFKVR----------------RIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILS 64 (146)
T ss_dssp CHHHHHHHHHHHHHH----------------HHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH----------------HHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHH
Confidence 467788888766442 788999999999999999998888543 111111 1344
Q ss_pred hhhHHHHHhcCCCCCCccccccccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccc
Q psy11043 113 AHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVG 192 (217)
Q Consensus 113 a~y~~~e~~~g~~l~~~~k~r~rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~ 192 (217)
.++.+++...+......+.. ++.+++||.++..+.. .|+.+|..++||+..++..||..+||++.||+
T Consensus 65 ~wl~e~e~~~~~~~~~~~~~---~~~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 65 KWLEEAEQVGALYNEKVGAN---ERKRKRRTTISIAAKD---------ALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp HHHHHCCC-------------------CCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHhhcccCccCcccCCC---CCCCCCCcCccHHHHH---------HHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 55556554443333333322 2233467777777766 99999999999999999999999999999999
Q ss_pred cccccchhHHHHH
Q psy11043 193 NWFKNRRQRDRAA 205 (217)
Q Consensus 193 ~WFqNrR~R~kr~ 205 (217)
+||||||+|+|+.
T Consensus 133 vWFqNRR~k~kr~ 145 (146)
T 1au7_A 133 VWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHHHHHTTSC
T ss_pred hhhHhhhhhhhcc
Confidence 9999999998863
No 3
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.73 E-value=6.6e-19 Score=141.79 Aligned_cols=138 Identities=18% Similarity=0.311 Sum_probs=93.2
Q ss_pred hcCCHHHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHHHhhccCCCCCcch----------------hH
Q psy11043 42 ESGDIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMYSILEHYKFTKDSH----------------GK 105 (217)
Q Consensus 42 ~~g~~~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~~lLe~~~f~~~~~----------------~~ 105 (217)
+.+|++.|..|.+.+.. .|....+.++++...+.+|.+..|+...- ..
T Consensus 2 ~~~~~~~~~~~~~~~k~----------------~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkP 65 (160)
T 1e3o_C 2 EPSDLEELEQFAKTFKQ----------------RRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKP 65 (160)
T ss_dssp CSCCHHHHHHHHHHHHH----------------HHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH----------------HHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcch
Confidence 46899999999977643 47778899999999999999988876431 12
Q ss_pred HHHHHHHhhhHHHH--HhcCCCCCCcc--ccccccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy11043 106 LQAMWLEAHYQEAE--KLRGRPLGPVD--KYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELA 181 (217)
Q Consensus 106 lq~lw~~a~y~~~e--~~~g~~l~~~~--k~r~rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA 181 (217)
+-+.|++....... ...+.+ +.+. ......+.+++||.|+..+.. .|+.+|..++||+..++..||
T Consensus 66 lL~~WL~e~e~~~~~~~~~~s~-~~~~~~~~~~~~~~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA 135 (160)
T 1e3o_C 66 LLEKWLNDAEANLSSDSSLSSP-SALNSPGIEGLSRRRKKRTSIETNIRV---------ALEKSFMENQKPTSEDITLIA 135 (160)
T ss_dssp HHHHHHHHHC-----------------------------CCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHH
T ss_pred hHHHHHHhhhcccccCCCCCCC-CCcCCCCCCCCCCCCcCccccCHHHHH---------HHHHHHhhcCCCCHHHHHHHH
Confidence 23356653321110 001111 0010 111112334467777776666 999999999999999999999
Q ss_pred HHhCCCccccccccccchhHHHHH
Q psy11043 182 QATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 182 ~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
..+||++.||++||||||+|+||.
T Consensus 136 ~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 136 EQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHCCChHHhhHhhHHhhhhhhcc
Confidence 999999999999999999999863
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.71 E-value=1.5e-18 Score=138.43 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=92.1
Q ss_pred CHHHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHHHhhccCCCCCcch----------------hHHHH
Q psy11043 45 DIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMYSILEHYKFTKDSH----------------GKLQA 108 (217)
Q Consensus 45 ~~~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~~lLe~~~f~~~~~----------------~~lq~ 108 (217)
|+|.|..|...+... |+.+.|.+++...++..+.+..|+.+.- ..+-+
T Consensus 2 ~~~~~~~fa~~f~~~----------------ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~ 65 (151)
T 3d1n_I 2 NMEEIREFAKNFKIR----------------RLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLE 65 (151)
T ss_dssp CHHHHHHHHHHHHHH----------------HHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH----------------HhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHH
Confidence 578888888766442 6778999999999998888888875431 11223
Q ss_pred HHHHhhhHHHHHhcCCCC-CCccccccccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Q psy11043 109 MWLEAHYQEAEKLRGRPL-GPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLT 187 (217)
Q Consensus 109 lw~~a~y~~~e~~~g~~l-~~~~k~r~rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt 187 (217)
-|++....... .+... .+... ...++.+++||.++..+.. .|+.+|..++||+..++..||..+||+
T Consensus 66 ~Wl~e~e~~~~--~~~~~~~~~~~-~~~~~~rr~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~L~ 133 (151)
T 3d1n_I 66 KWLNEAELRNQ--EGQQNLMEFVG-GEPSKKRKRRTSFTPQAIE---------ALNAYFEKNPLPTGQEITEMAKELNYD 133 (151)
T ss_dssp HHHHHHHHHHH--HCSTTHHHHHC-SSCCCCCCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTSC
T ss_pred HHHHHHHhccc--cCcccccccCC-CCCCCCCCCCcccCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHHCCC
Confidence 35553322211 11110 00000 0112334467777776666 999999999999999999999999999
Q ss_pred ccccccccccchhHHHH
Q psy11043 188 PTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 188 ~~qV~~WFqNrR~R~kr 204 (217)
+.||+|||||||+|+||
T Consensus 134 ~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 134 REVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHhccCC
Confidence 99999999999999986
No 5
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.71 E-value=1.9e-18 Score=138.41 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=91.5
Q ss_pred CHHHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHHHhhccCCCCCcc-----------------hhHHH
Q psy11043 45 DIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMYSILEHYKFTKDS-----------------HGKLQ 107 (217)
Q Consensus 45 ~~~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~~lLe~~~f~~~~-----------------~~~lq 107 (217)
+.+.|+.|...+... |+.+.|.+++++.+...|.+..|+.+. .+.|+
T Consensus 8 ~~~~l~~fa~~fk~~----------------ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~ 71 (155)
T 3l1p_A 8 LQKELEQFAKLLKQK----------------RITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLE 71 (155)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh----------------hheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHH
Confidence 456677787666542 888999999999999888888887755 33333
Q ss_pred HHHHHhhhHHHHHhcCCCCCCccccccccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Q psy11043 108 AMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLT 187 (217)
Q Consensus 108 ~lw~~a~y~~~e~~~g~~l~~~~k~r~rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt 187 (217)
. |++.................. ++.+++||.++..+.. .|+.+|..++||+..++..||..+||+
T Consensus 72 ~-Wl~eae~~~~~~~~~~~~~~~-----~~~rr~Rt~ft~~Q~~---------~Le~~F~~~~yps~~~r~~LA~~l~L~ 136 (155)
T 3l1p_A 72 K-WVEEADNNENLQEISKSETLV-----QARKRKRTSIENRVRW---------SLETMFLKSPKPSLQQITHIANQLGLE 136 (155)
T ss_dssp H-HHHHHTTCHHHHHSSCC---C-----CCSCCCCCCCCHHHHH---------HHHTTTTTCSCCCHHHHHHHHHHTTCC
T ss_pred H-HhhhhhcccCccccccccccc-----cCCCCCCcccCHHHHH---------HHHHHHccCCCCCHHHHHHHHHHcCCC
Confidence 3 665322111111011111111 2233467777766666 999999999999999999999999999
Q ss_pred ccccccccccchhHHHHH
Q psy11043 188 PTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 188 ~~qV~~WFqNrR~R~kr~ 205 (217)
..||++||||||+|+|+.
T Consensus 137 ~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 137 KDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred hhheeeccccccccccCC
Confidence 999999999999999874
No 6
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.66 E-value=4.4e-17 Score=119.94 Aligned_cols=68 Identities=29% Similarity=0.426 Sum_probs=57.6
Q ss_pred CCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhhhhhh
Q psy11043 137 KFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLEV 213 (217)
Q Consensus 137 k~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~~~~~ 213 (217)
+.+++||.|+..+.. .|+.+|..++||+..++..||..+||++.||+|||||||+|+|+.....+...
T Consensus 16 ~~rr~Rt~ft~~Ql~---------~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~ 83 (93)
T 3a01_A 16 KRKKPRTSFTRIQVA---------ELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAE 83 (93)
T ss_dssp CCCCCCCCCCHHHHH---------HHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCcCCCHHHHH---------HHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHH
Confidence 344577777777766 99999999999999999999999999999999999999999999887665444
No 7
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=4.8e-17 Score=112.90 Aligned_cols=62 Identities=29% Similarity=0.507 Sum_probs=55.2
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhhh
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNR 210 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~~ 210 (217)
++||.|+..+.. .|+..|..++||+..++..||..+||+..||++||||||+|+|+......
T Consensus 4 r~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 4 RTRTTFTSSQIA---------ELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CCSCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHH---------HHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 366676666666 99999999999999999999999999999999999999999999877544
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=6.6e-17 Score=115.64 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=55.9
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhhh
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNR 210 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~~ 210 (217)
+++||.|+..+.. +|+.+|..++||+..++..||..+||++.||++||||||+|+|+......
T Consensus 8 rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 8 QRNRTSFTQEQIE---------ALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CCCCCCSCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHH---------HHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 3467777776666 99999999999999999999999999999999999999999999876554
No 9
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=5.3e-17 Score=109.04 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=49.9
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
+||.++..+.. .|+..|..++||+..++..||..+||++.||++||||+|+|+|+
T Consensus 3 ~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 3 PRTPFTTAQLL---------ALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCHHHHH---------HHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH---------HHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 56666666655 99999999999999999999999999999999999999999986
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.64 E-value=1.1e-16 Score=113.75 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=55.5
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhh
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAK 208 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~ 208 (217)
.+++||.++..+.. .|+.+|..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 13 ~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 13 TRKKRCPYTKHQTL---------ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TSCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHH---------HHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34467777777766 999999999999999999999999999999999999999999987653
No 11
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.64 E-value=3.7e-17 Score=113.49 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=53.9
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
++||.++..+.. .|+.+|..++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 4 r~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 4 KRRVLFSQAQVY---------ELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp SSCSSCCHHHHH---------HHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCccCHHHHH---------HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 356666666666 9999999999999999999999999999999999999999999876543
No 12
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.63 E-value=4.2e-17 Score=110.76 Aligned_cols=55 Identities=29% Similarity=0.586 Sum_probs=50.0
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
+||.++..+.. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+
T Consensus 6 ~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 6 PRTAFSSEQLA---------RLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -CCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHH---------HHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 56666666666 99999999999999999999999999999999999999999986
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.63 E-value=7e-17 Score=110.40 Aligned_cols=57 Identities=28% Similarity=0.409 Sum_probs=51.8
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
++||.++..+.. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+.
T Consensus 5 r~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 5 RTRTAYTRAQLL---------ELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHH---------HHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 366666666666 999999999999999999999999999999999999999999985
No 14
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.63 E-value=3e-17 Score=111.34 Aligned_cols=57 Identities=30% Similarity=0.522 Sum_probs=45.9
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHH
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~k 203 (217)
.+++|+.++..+.. +|+.+|..++||+..++..||..+||+..||++||+|+|+|+|
T Consensus 5 ~rr~Rt~ft~~q~~---------~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARA---------FLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHH---------HHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34466666666655 9999999999999999999999999999999999999999875
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.5e-17 Score=112.13 Aligned_cols=60 Identities=32% Similarity=0.526 Sum_probs=53.3
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+++|+.|+..+.. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 8 rr~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 8 RRHRTIFTDEQLE---------ALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCHHHHH---------HHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 3467777776666 99999999999999999999999999999999999999999998543
No 16
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.63 E-value=1.2e-16 Score=113.44 Aligned_cols=63 Identities=29% Similarity=0.438 Sum_probs=55.7
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
.+++||.|+..+.. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+.....
T Consensus 9 ~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTY---------ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHH---------HHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHH---------HHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34467777777766 9999999999999999999999999999999999999999999876643
No 17
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.63 E-value=1.1e-16 Score=114.73 Aligned_cols=63 Identities=33% Similarity=0.499 Sum_probs=55.7
Q ss_pred cCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 136 KKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 136 kk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
++.+++||.|+..+.. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 16 ~~~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLD---------ELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHH---------HHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3445578777777766 99999999999999999999999999999999999999999998754
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=113.56 Aligned_cols=62 Identities=26% Similarity=0.436 Sum_probs=55.1
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
+++||.|+..++. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+.....
T Consensus 8 rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 8 KRMRTSFKHHQLR---------TMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHH---------HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 3467777777666 9999999999999999999999999999999999999999999976643
No 19
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.9e-16 Score=112.33 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=50.9
Q ss_pred cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 152 HCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
..|+.+++.+|+.+|..++||+..++++||..|||+.+||+|||||+|+|+|+..-
T Consensus 8 ~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 8 KRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 34667777799999999999999999999999999999999999999999997543
No 20
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.1e-16 Score=108.30 Aligned_cols=56 Identities=27% Similarity=0.493 Sum_probs=50.5
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
+||.++..+.. .|+.+|..++||+..++..||..+||+..||++||||+|+|+|+.
T Consensus 4 ~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 4 YRTAFTRDQLG---------RLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCHHHHH---------HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHH---------HHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 56666666655 999999999999999999999999999999999999999999874
No 21
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-16 Score=113.54 Aligned_cols=61 Identities=31% Similarity=0.441 Sum_probs=55.8
Q ss_pred CCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 137 KFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 137 k~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
+.+++||.|+.+|+. +|+.+|..++||+..++..||..+||+..||++||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Ql~---------~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLE---------ILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHH---------HHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 345578899998887 9999999999999999999999999999999999999999999743
No 22
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=105.31 Aligned_cols=53 Identities=30% Similarity=0.505 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
.|+..+...|+..|..++||+..++..||..+||+..||++||||||+|+|+.
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 46777777999999999999999999999999999999999999999999984
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=5.6e-17 Score=111.81 Aligned_cols=58 Identities=33% Similarity=0.627 Sum_probs=52.1
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
++||.|+..+.. .|+.+|..++||+..++..||..+||+..||++||||+|+|+|+..
T Consensus 5 r~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 5 RVRTVLNEKQLH---------TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCCCCCSHHHHH---------HHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCHHHHH---------HHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 467777777666 9999999999999999999999999999999999999999988643
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.61 E-value=4.6e-17 Score=110.89 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=49.7
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
++||.|+..+.. .|+.+|..++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 5 r~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 5 KMRTVFSQAQLC---------ALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ---CCCCHHHHH---------HHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCHHHHH---------HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467777766666 999999999999999999999999999999999999999998863
No 25
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-16 Score=114.39 Aligned_cols=62 Identities=27% Similarity=0.437 Sum_probs=54.9
Q ss_pred cCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 136 KKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 136 kk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
++.+++||.|+..|.. .|+.+|..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLM---------GLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3445578777777766 9999999999999999999999999999999999999999998753
No 26
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.61 E-value=7.2e-17 Score=109.24 Aligned_cols=53 Identities=30% Similarity=0.513 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 154 f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
|+..+...|+.+|..++||+..++..||..+||+..||++||||||+|+|+..
T Consensus 6 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 6 FTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 44445559999999999999999999999999999999999999999999864
No 27
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-16 Score=114.39 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=54.9
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhh
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAK 208 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~ 208 (217)
.+++|+.|+..+.. +|+.+|..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 7 ~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 7 GRRERTTFTRAQLD---------VLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCSSCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCHHHHH---------HHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 44467777777766 999999999999999999999999999999999999999999986543
No 28
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=7.1e-17 Score=112.60 Aligned_cols=59 Identities=25% Similarity=0.455 Sum_probs=52.5
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
+++|+.|+..|.. +|+.+|..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 8 rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 8 RKKRIPYSKGQLR---------ELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCSCCCSCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCcCCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3467777766666 9999999999999999999999999999999999999999998753
No 29
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.1e-16 Score=110.18 Aligned_cols=58 Identities=26% Similarity=0.485 Sum_probs=51.6
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+|+.++..+.. +|+.+|..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 10 ~R~~ft~~q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 10 GQVRFSNDQTI---------ELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHH---------HHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 56666666555 99999999999999999999999999999999999999999998643
No 30
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=9.4e-17 Score=111.85 Aligned_cols=59 Identities=24% Similarity=0.461 Sum_probs=52.6
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
+++||.++..+.. +|+.+|..++||+..++..||..+||+..||++||||||+|+|+..
T Consensus 8 rr~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 8 RSSRTRFTDYQLR---------VLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCHHHHH---------HHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3467777776666 9999999999999999999999999999999999999999998743
No 31
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=8.9e-17 Score=111.95 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=53.3
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
.+++||.|+..+.. +|+.+|..++||+..++..||..+||+..||++||||+|+|+|+..
T Consensus 7 ~rr~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 7 GKRPRTRITDDQLR---------VLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCSCSCCCCHHHHH---------HHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHH---------HHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 33467777777766 9999999999999999999999999999999999999999998753
No 32
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=1.2e-16 Score=112.16 Aligned_cols=58 Identities=38% Similarity=0.743 Sum_probs=50.4
Q ss_pred ccchHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhhh
Q psy11043 153 CFKERTRSLLREWY---LQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNR 210 (217)
Q Consensus 153 ~f~~~~r~~L~~~f---~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~~ 210 (217)
.|+..+..+|+.+| ..++||+..++..||..+||+..||+|||||+|+|+|+......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 34445555999999 88999999999999999999999999999999999998765443
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.61 E-value=5.8e-17 Score=112.42 Aligned_cols=60 Identities=32% Similarity=0.484 Sum_probs=53.7
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+++||.++..+.. .|+.+|..++||+..++..||..+||++.||++||||+|+|+|+...
T Consensus 4 rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 4 RRQRTHFTSQQLQ---------QLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SCSCCCCCHHHHH---------HHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHH---------HHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 3467777776666 99999999999999999999999999999999999999999998655
No 34
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.7e-16 Score=110.41 Aligned_cols=54 Identities=35% Similarity=0.709 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 154 FKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 154 f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
|+..+..+|+.+|.. ++||+..++..||..+||+..||+|||||+|+|+|+...
T Consensus 14 ~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 14 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 444444599999987 999999999999999999999999999999999998643
No 35
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.60 E-value=3e-16 Score=106.06 Aligned_cols=53 Identities=28% Similarity=0.700 Sum_probs=49.7
Q ss_pred cccchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 152 HCFKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
..|+..+..+|+.+|.. ++||+..++..||..+||+..||++||+|+|+|+|+
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 45777888899999999 999999999999999999999999999999999986
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=7.4e-17 Score=113.60 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=55.1
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
.++.||.++..+.. .|+.+|..++||+..++..||..+||+..||++||||+|+|+|+....+
T Consensus 9 ~rr~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 9 KRRNRTTFTSYQLE---------ELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CCSCSCSSCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 34467777777766 9999999999999999999999999999999999999999999865543
No 37
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.60 E-value=2.2e-16 Score=111.10 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=52.5
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+.|+.++..|.. .|+.+|..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 9 r~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 9 KKRVPYTKVQLK---------ELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCSCHHHHH---------HHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCHHHHH---------HHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 356666666655 99999999999999999999999999999999999999999998644
No 38
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=1.9e-16 Score=109.88 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=52.3
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+||.++..|.. .|+.+|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 5 ~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 5 GRQTYTRYQTL---------ELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp TTCCCCHHHHH---------HHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCcCHHHHH---------HHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 56666666655 99999999999999999999999999999999999999999998654
No 39
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.60 E-value=2.1e-16 Score=105.78 Aligned_cols=54 Identities=33% Similarity=0.565 Sum_probs=48.9
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHH
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~k 203 (217)
+|+.++..+.. .|+.+|..++||+..++..||..+||+..||++||||+|+|+|
T Consensus 5 ~Rt~~t~~q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 5 PRVLFSQAQVY---------ELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHH---------HHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 56666666655 9999999999999999999999999999999999999999975
No 40
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-16 Score=115.24 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=54.8
Q ss_pred cCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 136 KKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 136 kk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
++.+++||.|+..+.. +|+.+|..++||+..++..||..+||+..||++||||||+|+|+..
T Consensus 20 ~~~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLC---------VLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHH---------HHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHH---------HHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3345577777777766 9999999999999999999999999999999999999999998754
No 41
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.8e-17 Score=111.87 Aligned_cols=60 Identities=33% Similarity=0.508 Sum_probs=53.3
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
.+++|+.|+..|.. +|+.+|..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 7 GRKPRTIYSSFQLA---------ALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCSSCSSCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCHHHHH---------HHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34467777777766 9999999999999999999999999999999999999999988743
No 42
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=1.5e-16 Score=108.94 Aligned_cols=55 Identities=36% Similarity=0.707 Sum_probs=49.0
Q ss_pred CCccCCCcccccccchHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWY---LQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f---~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
+|+.++..+.. +|+.+| ..++||+..++..||..+||+..||++||+|+|+|+|+
T Consensus 6 ~R~~ft~~q~~---------~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 6 EGRHMNKQATE---------ILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCSSTTTHHH---------HHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCcCCHHHHH---------HHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 55566666655 999999 88999999999999999999999999999999999875
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-16 Score=109.06 Aligned_cols=58 Identities=28% Similarity=0.469 Sum_probs=51.7
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+|+.++..+.. +|+.+|..++||+..++..||..+||+..||++||||+|+|+|+...
T Consensus 4 ~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 4 PRTAFTQNQIE---------VLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CSCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 56666666655 99999999999999999999999999999999999999999987544
No 44
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-16 Score=112.85 Aligned_cols=57 Identities=28% Similarity=0.576 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 153 CFKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
.|+..++.+|+.||.. ++||+..++..||..+||+..||+|||||+|+|.|+.....
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 3444555599999987 69999999999999999999999999999999999876543
No 45
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-16 Score=113.20 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQD----PYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~----~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
.++.||.|+.+|.. +|+.+|..+ +||+..++..||..+||+..||+|||||||+|+|+..
T Consensus 8 ~rr~Rt~ft~~Q~~---------~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 8 ALQDRTQFSDRDLA---------TLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCSSCCCCHHHHH---------HHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHH---------HHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34467777776666 999999999 9999999999999999999999999999999999854
No 46
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.58 E-value=3.1e-16 Score=113.67 Aligned_cols=58 Identities=38% Similarity=0.743 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhhh
Q psy11043 153 CFKERTRSLLREWY---LQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNR 210 (217)
Q Consensus 153 ~f~~~~r~~L~~~f---~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~~ 210 (217)
.|+..++.+|+.+| ..++||+..++..||..+||+..||+|||||+|+|+|+......
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 34455555999999 88999999999999999999999999999999999998765543
No 47
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=6.5e-16 Score=107.06 Aligned_cols=56 Identities=39% Similarity=0.717 Sum_probs=49.6
Q ss_pred cccchHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 152 HCFKERTRSLLREWYL---QDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~---~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
..|+..++.+|+.||. .+|||+..++..||..+||+..||+|||+|+|+|.|+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3688899999999999 8999999999999999999999999999999999987543
No 48
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=1.5e-15 Score=106.40 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=49.8
Q ss_pred cccchHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 152 HCFKERTRSLLREWYLQ-DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~-~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
..|+..+...|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 6 t~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 6 ATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 34555555599999996 999999999999999999999999999999999999764
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=7.8e-16 Score=108.17 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 153 CFKERTRSLLREWYLQ-DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~-~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
.|+..+...|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3444445599999995 999999999999999999999999999999999999764
No 50
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.57 E-value=8.9e-16 Score=105.72 Aligned_cols=52 Identities=23% Similarity=0.513 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 155 KERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 155 ~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
+..++..|+..|..++||+..++.+||..|||+.+||++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 3456779999999999999999999999999999999999999999999753
No 51
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.57 E-value=4.5e-16 Score=111.62 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=50.9
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
+++||.++..+.. .|+..|..++||+..++..||..+||+..||++||||||+|+|+.
T Consensus 21 rr~Rt~ft~~Ql~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 21 RRGRQTYTRYQTL---------ELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ---CCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcccCHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3467777777766 999999999999999999999999999999999999999999974
No 52
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=8.1e-16 Score=113.85 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=52.8
Q ss_pred CCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 140 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 140 ~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
++||.|+..|.. .|+..|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 36 r~Rt~ft~~Ql~---------~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 36 GLRTNFTTRQLT---------ELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -CCCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCcCHHHHH---------HHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356666666666 99999999999999999999999999999999999999999998764
No 53
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=110.76 Aligned_cols=59 Identities=32% Similarity=0.612 Sum_probs=54.4
Q ss_pred ccccchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 151 THCFKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 151 ~~~f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
++-|+++++.+|+.||.. +|||+..+|..||..|||+..||+|||+|+|.|.++...+.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 467899999999999987 99999999999999999999999999999999999876544
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1e-15 Score=112.84 Aligned_cols=63 Identities=29% Similarity=0.512 Sum_probs=56.5
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCccccccccccchhHH
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATG---------------LTPTQVGNWFKNRRQRD 202 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tg---------------Lt~~qV~~WFqNrR~R~ 202 (217)
.++.|+.|+..+.. +|+.+|..++||+..+++.||..++ |+..||.+||||||+|+
T Consensus 7 ~rr~R~~ft~~ql~---------~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~ 77 (95)
T 2cuf_A 7 GRGSRFTWRKECLA---------VMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEI 77 (95)
T ss_dssp CCCCSCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHH
Confidence 44577777777766 9999999999999999999999999 99999999999999999
Q ss_pred HHHHhhh
Q psy11043 203 RAAAAKN 209 (217)
Q Consensus 203 kr~~~~~ 209 (217)
|+.....
T Consensus 78 kr~~~~~ 84 (95)
T 2cuf_A 78 KRRANIA 84 (95)
T ss_dssp HHHHHCC
T ss_pred HHHhhcc
Confidence 9987653
No 55
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.55 E-value=7.8e-16 Score=111.94 Aligned_cols=58 Identities=28% Similarity=0.384 Sum_probs=51.5
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
+++||.|+..+.. .|+..|..++||+..++..||..+||+..||++||||||+|+|+.
T Consensus 29 rr~Rt~ft~~Ql~---------~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 29 KRQRTSYTRYQTL---------ELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp --CCCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHH---------HHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3467777776666 999999999999999999999999999999999999999999874
No 56
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.55 E-value=4.2e-16 Score=111.73 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCCCCCccCCCcccccccchHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 137 KFPLPRTIWDGEQKTHCFKERTRSLLREWYLQ----DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 137 k~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~----~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
+.+++||.|+.+|+. .|+.+|.. ++||+..++++||..+||++.||+|||||||+|.|+
T Consensus 16 ~~rR~Rt~ft~~Ql~---------~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKE---------RMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHH---------HHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHH---------HHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 344577777777776 99999999 999999999999999999999999999999998764
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=110.72 Aligned_cols=51 Identities=27% Similarity=0.685 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHH
Q psy11043 153 CFKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~k 203 (217)
.|+..++.+|+.+|.. ++||+..++..||..+||+..||++||||||+|+|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3444455599999999 99999999999999999999999999999999987
No 58
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1e-15 Score=111.87 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=51.6
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
.|+..+...|+.+|..++||+..++.+||..+||+.+||+|||||||+|+|+...+.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 567777779999999999999999999999999999999999999999998765543
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=9.5e-16 Score=107.73 Aligned_cols=45 Identities=20% Similarity=0.546 Sum_probs=43.4
Q ss_pred HHHHHH-hcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 161 LLREWY-LQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 161 ~L~~~f-~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
.|+..| ..++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 22 ~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 22 TLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 999999 999999999999999999999999999999999999863
No 60
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-15 Score=105.03 Aligned_cols=56 Identities=23% Similarity=0.451 Sum_probs=49.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 152 HCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
..|+..+...|+..|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 11 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 11 AKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 34444445599999999999999999999999999999999999999999998654
No 61
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=105.76 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=50.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhh
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAK 208 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~ 208 (217)
.|+..+...|+..|..++||+..++..||..+||+..||++||||||+|+|+....
T Consensus 13 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 35556666999999999999999999999999999999999999999999986543
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.52 E-value=3.7e-15 Score=107.33 Aligned_cols=53 Identities=25% Similarity=0.636 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHH
Q psy11043 154 FKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206 (217)
Q Consensus 154 f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~ 206 (217)
|+..+..+|+.+|.. ++||+..++..||..+||+..||+|||||+|+|+|+..
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 666667799999999 99999999999999999999999999999999998854
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.8e-15 Score=110.15 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=55.9
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------------------CCCccccccccc
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQAT---------------------GLTPTQVGNWFK 196 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~t---------------------gLt~~qV~~WFq 196 (217)
.++.||.|+..+.. +|+..|..++||+..++++||..+ +|+..+|.||||
T Consensus 6 ~Rr~Rt~ft~~ql~---------~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFq 76 (102)
T 2da6_A 6 SGRNRFKWGPASQQ---------ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFA 76 (102)
T ss_dssp SCCCCCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHH
T ss_pred CCCCCccCCHHHHH---------HHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeec
Confidence 44578888877766 999999999999999999999999 799999999999
Q ss_pred cchhHHHHHHhhh
Q psy11043 197 NRRQRDRAAAAKN 209 (217)
Q Consensus 197 NrR~R~kr~~~~~ 209 (217)
|||+|+|+..+..
T Consensus 77 NRR~k~kr~~~~~ 89 (102)
T 2da6_A 77 NRRKEEAFRQKLA 89 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHhhHhh
Confidence 9999999876543
No 64
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-15 Score=105.61 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=49.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 152 HCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
..|+..+..+|+.+|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 13 ~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 13 NKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred ccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 34455555599999999999999999999999999999999999999999987543
No 65
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.49 E-value=4.1e-15 Score=109.85 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=52.1
Q ss_pred CCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 141 prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+|+.++..+.. .|+..|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 28 ~Rt~ft~~Ql~---------~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 28 KICKKTPEQLH---------MLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp CSSSSCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCccCCHHHHH---------HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 56666666666 99999999999999999999999999999999999999999998543
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-15 Score=102.39 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=46.9
Q ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 154 f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
+.++++..|+.+|..++||+..++..||..+||+..||++||||||+|.++
T Consensus 10 p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 10 PLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 446677799999999999999999999999999999999999999998764
No 67
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.49 E-value=1.8e-15 Score=108.50 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=50.4
Q ss_pred CCCCCccCCCcccccccchHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 138 FPLPRTIWDGEQKTHCFKERTRSLLREWYLQ-----DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 138 ~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~-----~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
.++.||.|+.+|+. .|+ .|.. ++||+..++++||..+||++.||+|||||||+|.|+
T Consensus 17 ~rR~Rt~ft~~Ql~---------~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKE---------KML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHH---------HHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHH---------HHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34577777777766 999 7998 999999999999999999999999999999998764
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-15 Score=104.69 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 155 KERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 155 ~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+..+...|+..|..++||+..++..||..+||+..||++||||||+|+|+...
T Consensus 12 t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 12 SHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 34445599999999999999999999999999999999999999999987543
No 69
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.6e-15 Score=107.42 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=51.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
.|+..++.+|+..|..++||+..++..||..+||+..||++||||||+|+|+.....
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 366777779999999999999999999999999999999999999999998765543
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.4e-14 Score=99.90 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=50.7
Q ss_pred CCCCCCccCCCcccccccchHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccccccchhH
Q psy11043 137 KFPLPRTIWDGEQKTHCFKERTRSLLREWYLQ-DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQR 201 (217)
Q Consensus 137 k~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~-~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R 201 (217)
+.+++||.++.+|.. +|+.+|.. ++||+...++.||.+|||++++|++||||+|--
T Consensus 6 ~~kR~RT~~s~eQL~---------~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 6 SGPRSRTKISLEALG---------ILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCSHHHH---------HHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHH---------HHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 345588888888877 99999999 999999999999999999999999999999853
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=5.7e-15 Score=101.45 Aligned_cols=46 Identities=15% Similarity=0.458 Sum_probs=42.8
Q ss_pred HHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 159 RSLLREWY-LQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 159 r~~L~~~f-~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
...|+..| ..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 12 ~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 12 NAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 34999999 56999999999999999999999999999999999875
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.44 E-value=8e-15 Score=109.13 Aligned_cols=62 Identities=27% Similarity=0.458 Sum_probs=51.3
Q ss_pred cCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------hC---CCccccccc
Q psy11043 136 KKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQA------------------TG---LTPTQVGNW 194 (217)
Q Consensus 136 kk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~------------------tg---Lt~~qV~~W 194 (217)
++.++.|+.|+..+.. +|+.+|..++||+..++++||.. +| |++.||++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~---------~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vW 77 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQ---------ILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNW 77 (99)
T ss_dssp ------CCCCCHHHHH---------HHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHH
T ss_pred CCCCCCCcCcCHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeec
Confidence 4455678888887777 99999999999999999999999 88 999999999
Q ss_pred cccchhHHHHHH
Q psy11043 195 FKNRRQRDRAAA 206 (217)
Q Consensus 195 FqNrR~R~kr~~ 206 (217)
|||||+++|+..
T Consensus 78 FqNRR~k~k~k~ 89 (99)
T 1lfb_A 78 FANRRKEEAFRH 89 (99)
T ss_dssp HHHHHHTTSCCC
T ss_pred cHHHHHHHHHhc
Confidence 999999886543
No 73
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.40 E-value=2.2e-14 Score=115.40 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=50.8
Q ss_pred CCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 139 PLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 139 p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
+++||.|+..+.. .|+.+|..++||+..++..||..+||+..||+|||||||+|+|+...
T Consensus 98 rr~Rt~ft~~q~~---------~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 98 KKPRLVFTDVQRR---------TLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp --CCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCcCCHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3466666666655 99999999999999999999999999999999999999999886543
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=4.9e-13 Score=92.71 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhH
Q psy11043 157 RTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQR 201 (217)
Q Consensus 157 ~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R 201 (217)
+++.+|+.+|..|++|+.+++..||..+||+.++|++||||+|++
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 446699999999999999999999999999999999999999975
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.19 E-value=7.2e-13 Score=109.61 Aligned_cols=60 Identities=27% Similarity=0.451 Sum_probs=50.9
Q ss_pred cCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCccccccc
Q psy11043 136 KKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATG---------------------LTPTQVGNW 194 (217)
Q Consensus 136 kk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tg---------------------Lt~~qV~~W 194 (217)
++.++.|+.|+..+.. .|+.+|..++||+..+|+.||..++ |+..+|+||
T Consensus 113 ~k~rr~R~~ft~~ql~---------~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~W 183 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQ---------ILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNW 183 (194)
T ss_dssp ----CCCCCCCHHHHH---------HHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHH
T ss_pred ccCCCCCcccCHHHHH---------HHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchh
Confidence 4455678888777766 9999999999999999999999999 999999999
Q ss_pred cccchhHHHH
Q psy11043 195 FKNRRQRDRA 204 (217)
Q Consensus 195 FqNrR~R~kr 204 (217)
|||||+++|.
T Consensus 184 FqNRR~~~k~ 193 (194)
T 1ic8_A 184 FANRRKEEAF 193 (194)
T ss_dssp HHHHHHHCC-
T ss_pred chhhhhhhhc
Confidence 9999998763
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.14 E-value=7.6e-12 Score=104.95 Aligned_cols=59 Identities=27% Similarity=0.517 Sum_probs=49.8
Q ss_pred ccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCcccccc
Q psy11043 135 RKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATG---------------------LTPTQVGN 193 (217)
Q Consensus 135 rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tg---------------------Lt~~qV~~ 193 (217)
.++.++.|+.|+..+.. +|+.+|..++||+..+|++||..++ ||..||+|
T Consensus 139 ~~k~RR~R~~ft~~ql~---------~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~ 209 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQ---------ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYN 209 (221)
T ss_dssp ---CCCCCCCCCHHHHH---------HHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHH
T ss_pred cCCCCCCCcCCCHHHHH---------HHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHH
Confidence 34556678777777766 9999999999999999999999987 89999999
Q ss_pred ccccchhHH
Q psy11043 194 WFKNRRQRD 202 (217)
Q Consensus 194 WFqNrR~R~ 202 (217)
||+|||+++
T Consensus 210 WFqNRR~~~ 218 (221)
T 2h8r_A 210 WFANRRKEE 218 (221)
T ss_dssp HHHHHHTTC
T ss_pred HhHHhhhhh
Confidence 999999864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.08 E-value=2e-11 Score=109.11 Aligned_cols=52 Identities=31% Similarity=0.578 Sum_probs=47.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHH
Q psy11043 152 HCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~k 203 (217)
..|....+..|+..|..++||+..+|.+||..+||+.+||+|||||||+|+|
T Consensus 370 ~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 370 AAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp CSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3456666779999999999999999999999999999999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.35 E-value=5.7e-08 Score=59.20 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=18.4
Q ss_pred cccccccccchhHHHHHHhhh
Q psy11043 189 TQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 189 ~qV~~WFqNrR~R~kr~~~~~ 209 (217)
+||+|||||||+|+|+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999877753
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.67 E-value=0.0065 Score=41.67 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCcccccccccc
Q psy11043 160 SLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKN 197 (217)
Q Consensus 160 ~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqN 197 (217)
.+|+.+|..+......+...|+.+++|+..||+-||-.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 39999999999999999999999999999999999953
No 80
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=79.87 E-value=0.9 Score=30.97 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 158 TRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 158 ~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
+..+++-.|+.||||+++-... | =.|||.||+......
T Consensus 17 ~vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 17 AVRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 3456777799999999764333 1 148888888766543
No 81
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=74.34 E-value=0.72 Score=34.23 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHhhh
Q psy11043 158 TRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKN 209 (217)
Q Consensus 158 ~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~~~ 209 (217)
+.++++-.|+.||||+++-... ==.|||+|||+.....
T Consensus 14 ~vRiIkiLyQSNPyP~peGTRq--------------aRRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 14 AVRLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHHSSCCCCCCCCTT--------------THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCCchh--------------hhHhHHHHHHHHHHHH
Confidence 3456777799999999753221 1258999998776544
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=42.90 E-value=19 Score=24.54 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
.+++..+.+|.-.|...- .-.++|..+|++...|+++...-|.+-|+.-.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 456666778877665432 34678999999999999999877777665543
No 83
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=40.80 E-value=76 Score=20.90 Aligned_cols=62 Identities=11% Similarity=-0.039 Sum_probs=38.0
Q ss_pred CCChhhhhhHhhHHhhcCCHHHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHHHhhc
Q psy11043 27 NFTVSQVATVCETLEESGDIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMYSILE 94 (217)
Q Consensus 27 ~~~~~q~~~vc~~l~~~g~~~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~~lLe 94 (217)
.-++......-..+.+.|+++.-..++...=. ....+..++...+.+++..|++.+....++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 74 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK------RNPKDAKLYSNRAACYTKLLEFQLALKDCE 74 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34555555555566788998776555543211 111235666677777788999998765443
No 84
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=38.46 E-value=1.1e+02 Score=22.48 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=36.2
Q ss_pred CChhhhhhHhhHHhhcCCH---------HHHHHHHHhCCCCCCCcccCCCcHHHHHHHHHHh
Q psy11043 28 FTVSQVATVCETLEESGDI---------ERLARFLWSLPVAHPNIGELNKNEAVLRARAIVS 80 (217)
Q Consensus 28 ~~~~q~~~vc~~l~~~g~~---------~~l~~fl~slp~~~~~~~~~~~~e~vlrAr~~v~ 80 (217)
+|.+||..|-..|...|+. +.+..++-.. ...+...|.|-|.++.++
T Consensus 41 LtdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~V------T~e~P~peDI~RV~arLa 96 (112)
T 2m0n_A 41 LTEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADV------TKDEPTAQDISRVASRLA 96 (112)
T ss_dssp CCHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHT------TTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHH------hccCcCHHHHHHHHHHHH
Confidence 8999999999999888774 5666676655 334556788888888874
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=35.81 E-value=23 Score=25.69 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHHHh
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAA 207 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~~~ 207 (217)
.+++..+.++. .|.. .+ .-.++|..+|++...|+++...-|.+-|+.-.
T Consensus 109 ~L~~~~r~v~~-~~~~-g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTT-TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888 5443 22 34678999999999999998777766665444
No 86
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=32.20 E-value=16 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCcccccccccc
Q psy11043 177 KRELAQATGLTPTQVGNWFKN 197 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqN 197 (217)
...+|..+|++..+|..|.+.
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 568899999999999999764
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.07 E-value=31 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHH
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr 204 (217)
.+++..+.++.-.|... + .-.++|..+|++...|+.+...-+.+-++
T Consensus 15 ~L~~~~r~il~l~~~~g-~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-L----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46677777888776543 2 24578999999999999988765555543
No 88
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=29.88 E-value=23 Score=25.40 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhH
Q psy11043 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQR 201 (217)
Q Consensus 154 f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R 201 (217)
|+.+.+..+-..+..++..+. ..+|+.+|++...|..|.+++...
T Consensus 8 ~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 8 LTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 333333355555555666553 357899999999999999776554
No 89
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=29.51 E-value=13 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccccccccccch
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
...||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998764
No 90
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=28.85 E-value=14 Score=22.90 Aligned_cols=24 Identities=13% Similarity=0.487 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccccccccccchh
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRRQ 200 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR~ 200 (217)
...||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 91
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.29 E-value=15 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccccccccccchh
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRRQ 200 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR~ 200 (217)
...||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 92
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.99 E-value=13 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccccccccccch
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
...||+.+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998764
No 93
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.40 E-value=3.9 Score=31.64 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=50.2
Q ss_pred CCCCCCcccCCCcHHHHHHHHHHhHhhhcHHHHH--Hhhc-cCCCC-CcchhHHHHHHHHhhhHHHHHhcCCCCCCcccc
Q psy11043 57 PVAHPNIGELNKNEAVLRARAIVSFHSGNYREMY--SILE-HYKFT-KDSHGKLQAMWLEAHYQEAEKLRGRPLGPVDKY 132 (217)
Q Consensus 57 p~~~~~~~~~~~~e~vlrAr~~v~~h~~~~~~~~--~lLe-~~~f~-~~~~~~lq~lw~~a~y~~~e~~~g~~l~~~~k~ 132 (217)
|........|...|.|++|...+ ||..+|...- ..|. +..|. ..+. +++...+|........ +.
T Consensus 66 ~~C~~C~~~I~~~~~v~~a~~~~-~H~~CF~C~~C~~~L~~g~~f~~~~~g----~~~C~~c~~~~~~~~~------~~- 133 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRAQDFV-YHLHCFACVVCKRQLATGDEFYLMEDS----RLVCKADYETAKQGGS------GG- 133 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEETTEE-EEGGGCBCTTTCCBCCTTCEEEECTTS----CEEEHHHHHHHHHCC----------
T ss_pred ccccccccccCCCcEEEEcCCce-EeeCCCcCCCCCCCCCCCCceEEccCC----eEECHHHHHHHhhccC------CC-
Confidence 33333334555556666666554 6888887552 3333 33332 1111 2344556655433211 11
Q ss_pred ccccCCCCCCccCCCcccccccchHHHHHHHHHHhcCCCCCH
Q psy11043 133 RVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNP 174 (217)
Q Consensus 133 r~rkk~p~prt~~~~~~~~~~f~~~~r~~L~~~f~~~~yPs~ 174 (217)
++.+++||+|+..|.. .|+..|..++||..
T Consensus 134 ---~~~~rprt~~~~~q~~---------~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 ---SGGSGGGTPMVAASPE---------RHDGGLQANPVEVQ 163 (169)
T ss_dssp ----------EEEECCCCE---------ECCSSCCCCCCCCC
T ss_pred ---CCCcCCCCcccHHHHH---------HHHHHHhCCCCccc
Confidence 2344689999999988 89999999999874
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.36 E-value=16 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCccccccccccc
Q psy11043 177 KRELAQATGLTPTQVGNWFKNR 198 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNr 198 (217)
..++|+.+|++...|..|.+..
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHCcCHHHHHHHHhhH
Confidence 5578999999999999998643
No 95
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=24.77 E-value=41 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCccccccccccch
Q psy11043 176 KKRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 176 ~k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
-+..+|+.+|+...+++.|.-..|
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHhCCCcccEEEEEeecC
Confidence 467899999999999999986555
No 96
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.46 E-value=18 Score=21.01 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCccccccccccch
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
..++|..+|++...|..|++...
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHcc
Confidence 45789999999999999997543
No 97
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.16 E-value=19 Score=22.85 Aligned_cols=24 Identities=13% Similarity=0.487 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccccccccccchh
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRRQ 200 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR~ 200 (217)
...||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987654
No 98
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.74 E-value=19 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccccccccccchh
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRRQ 200 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR~ 200 (217)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987653
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.54 E-value=62 Score=23.18 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
.+++..+.++.-.|...- .-.++|..+|++...|+.|...-|.+-++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 466677778877665432 246789999999999999998777766554
No 100
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.46 E-value=20 Score=22.80 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccccccccccch
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45789999999999999998764
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.89 E-value=49 Score=21.22 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccccccchhHHH
Q psy11043 153 CFKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~---~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~k 203 (217)
.+++..+.++.-.|.. ..+ .-.++|..+|++...|+.+...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4677888899888852 111 2347899999999999998866555554
No 102
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.05 E-value=23 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccccccccccch
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998876
No 103
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.22 E-value=45 Score=23.40 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhH
Q psy11043 153 CFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQR 201 (217)
Q Consensus 153 ~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R 201 (217)
.|++..+.+|.-.+.-- .-.++|..+|++...|+++..+-+.|
T Consensus 34 ~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 34 RLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45666666886654322 23678999999999999888755444
No 104
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.99 E-value=60 Score=25.10 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccccccchhHHHHH
Q psy11043 152 HCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205 (217)
Q Consensus 152 ~~f~~~~r~~L~~~f~~~~yPs~~~k~~LA~~tgLt~~qV~~WFqNrR~R~kr~ 205 (217)
..+++..+.+|.-.|... + .-.++|..+|++...|+.+...-|.+-|+.
T Consensus 186 ~~L~~~~r~vl~l~~~~g-~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE-L----PAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC-C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC-C----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 457778888888877543 1 345789999999999999988777666654
No 105
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.35 E-value=30 Score=21.81 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCcccccccc
Q psy11043 177 KRELAQATGLTPTQVGNWF 195 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WF 195 (217)
...||+.+|++..-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 106
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=20.34 E-value=26 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccccccccccch
Q psy11043 177 KRELAQATGLTPTQVGNWFKNRR 199 (217)
Q Consensus 177 k~~LA~~tgLt~~qV~~WFqNrR 199 (217)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998876
Done!