RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11043
(217 letters)
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 60.1 bits (146), Expect = 3e-13
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 147 GEQKTHCFKERTRSLLREWYLQD---PYPNPTKKRELAQATGLTPTQVGNWFKNRRQR 201
G+ K + +++R W Q PYP +K+++A T LT QV NWF N R+R
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 59.8 bits (145), Expect = 3e-13
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 147 GEQKTHCFKERTRSLLREWYLQD-PYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
G + + K L + ++ YP+ + + L++ + ++ WF++RR +D+
Sbjct: 1 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 59.0 bits (143), Expect = 9e-13
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 150 KTHCFKERTRSLLREWYLQD---PYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRA 204
+ H F + +L W+ ++ PY + L + T L+ Q+ NW NRR++++
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 54.6 bits (131), Expect = 5e-11
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 154 FKERTRSLLREWYLQ---DPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNR 210
F ++ +L E++ +PYP+ K ELA+ G+T +QV NWF N+R R + K +
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67
Query: 211 LE 212
E
Sbjct: 68 EE 69
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 51.8 bits (124), Expect = 3e-10
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
+ R+ L + + + N +K E+A+ G+TP QV WF N+R R +
Sbjct: 4 ISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 51.3 bits (123), Expect = 4e-10
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 155 KERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
+ L + + +P+ + L++ + WF+ RR +++
Sbjct: 2 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 50
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 51.2 bits (122), Expect = 1e-09
Identities = 7/57 (12%), Positives = 18/57 (31%)
Query: 149 QKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAA 205
+ T KE+ + + + + TG+ + W N + ++
Sbjct: 23 KFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 49.1 bits (117), Expect = 3e-09
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRR 199
PR ++ Q R L + ++ P+ + ++Q GL + V N+F N R
Sbjct: 1 PRLVFTDVQ---------RRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 49.1 bits (117), Expect = 4e-09
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT+ + +Q LR Y +P P+ K +L + TGL+P + WF+N+R
Sbjct: 6 VRTVLNEKQ---------LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC 56
Query: 201 RDR 203
+D+
Sbjct: 57 KDK 59
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 48.6 bits (116), Expect = 7e-09
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + EQ L + + + YP+ + LA L ++ WF NRR
Sbjct: 4 NRTSFTQEQ---------IEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 54
Query: 201 RDR 203
+ R
Sbjct: 55 KWR 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 47.2 bits (112), Expect = 2e-08
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + Q L + + YP+ + ELAQ T LT ++ WF+NRR
Sbjct: 5 SRTTFSASQ---------LDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRA 55
Query: 201 RDR 203
R R
Sbjct: 56 RLR 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 47.1 bits (112), Expect = 2e-08
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
F L + + Y +P +++ LA+ L+ QV WF+NRR + R
Sbjct: 7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 56
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 46.9 bits (111), Expect = 2e-08
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
+ R L + ++++ P +A+ + + WF NRRQ+++
Sbjct: 5 IETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 46.7 bits (111), Expect = 2e-08
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 162 LREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
L + + + Y ++ E+A A LT Q+ WF+NRR + +
Sbjct: 12 LEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 46.4 bits (110), Expect = 3e-08
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
R + Q L Y + + K+R+++ AT L+ Q+ WF+NRR
Sbjct: 4 KRIPYSKGQ---------LRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRV 54
Query: 201 RDR 203
+++
Sbjct: 55 KEK 57
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 46.6 bits (110), Expect = 4e-08
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 149 QKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
+T E L + YP+ L+ L + +F+N+R +
Sbjct: 10 SRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 46.1 bits (109), Expect = 5e-08
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + L + + P+ + +A+ L V WF NRRQ
Sbjct: 2 RRTTISIAA---------KDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 52
Query: 201 RDR 203
R++
Sbjct: 53 REK 55
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 46.6 bits (110), Expect = 5e-08
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 154 FKERTRS---LLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNR 210
FKE+T +L+ +L + L T LT ++ WF +++ K
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 67
Query: 211 LE 212
++
Sbjct: 68 ID 69
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 46.7 bits (111), Expect = 5e-08
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
R + Q L + +L + Y ++ E+A+ LT QV WF+NRR
Sbjct: 16 KRCPYTKHQ---------TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 66
Query: 201 RDR 203
+ +
Sbjct: 67 KMK 69
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 45.7 bits (108), Expect = 8e-08
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + +Q L + ++ YP+ + + E+A T LT +V WFKNRR
Sbjct: 4 QRTHFTSQQ---------LQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 54
Query: 201 RDR 203
+ R
Sbjct: 55 KWR 57
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 44.9 bits (106), Expect = 1e-07
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
PRT + EQ + L+ + ++ Y ++++L+ GL Q+ WF+N R
Sbjct: 2 PRTAFSSEQ---------LARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARA 52
Query: 201 R 201
+
Sbjct: 53 K 53
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 45.4 bits (107), Expect = 1e-07
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 155 KERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
+++ L + + +P+PT +A GLT Q WFK R R
Sbjct: 10 EDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 58
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 45.8 bits (108), Expect = 1e-07
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + Q + L + + + Y + ++ E+A L TQV WF+NRR
Sbjct: 30 LRTNFTTRQ---------LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 80
Query: 201 RDR 203
+ +
Sbjct: 81 KQK 83
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 44.1 bits (104), Expect = 3e-07
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + +Q L + + ++ Y + ++ ELA L + + WF+NRR
Sbjct: 2 YRTAFTRDQ---------LGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 52
Query: 201 RDR 203
+D+
Sbjct: 53 KDK 55
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 43.1 bits (101), Expect = 8e-07
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 154 FKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDRAAA 206
+ R R L +L+ P P+ + +A GL V WF NRRQ+ + ++
Sbjct: 15 IENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 42.6 bits (100), Expect = 1e-06
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
PRT + Q L + Q Y + ++ E + + LT TQV WF+NRR
Sbjct: 3 PRTPFTTAQ---------LLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 53
Query: 201 RDR 203
+ +
Sbjct: 54 KAK 56
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 42.6 bits (100), Expect = 1e-06
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 134 VRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGN 193
+R+K R ++ Q L + Q Y + ++ LA LTPTQV
Sbjct: 1 MRRK---RRVLFSQAQ---------VYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48
Query: 194 WFKNRRQRDR 203
WF+N R + +
Sbjct: 49 WFQNHRYKMK 58
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 42.2 bits (99), Expect = 1e-06
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
RT + Q + L + +LQ Y + +L+ L QV WFKNRR+
Sbjct: 4 TRTTFTSSQ---------IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR 54
Query: 201 RDRAAAAKNR 210
R + + +++
Sbjct: 55 RHKIQSDQHK 64
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 41.2 bits (96), Expect = 5e-06
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 153 CFKERTRSLLREWYLQDPYPNPTKKRELA---------------QATGLTPTQVGNWFKN 197
+++ +++ ++ ++ YP+ K+ E+A +T +V NWF N
Sbjct: 6 TWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFAN 65
Query: 198 RRQRDR 203
RR+ +
Sbjct: 66 RRKEIK 71
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 40.9 bits (95), Expect = 7e-06
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 30/83 (36%)
Query: 142 RTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQAT----------------- 184
R W + +L + Y + P+ ++ L +
Sbjct: 1 RFKWGPAS---------QQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQG 51
Query: 185 ----GLTPTQVGNWFKNRRQRDR 203
+T +V NWF NRR+ +
Sbjct: 52 LGSNLVTEVRVYNWFANRRKEEA 74
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 40.0 bits (93), Expect = 1e-05
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 141 PRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQ 200
R ++ Q L + Q Y + ++ LA LTPTQV WF+N R
Sbjct: 12 RRVLFTKAQ---------TYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62
Query: 201 RDR 203
+ +
Sbjct: 63 KTK 65
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 36.6 bits (84), Expect = 2e-04
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 162 LREWYLQDPYPNPTKKRELAQATGLTPTQVGNWFKNRRQRDR 203
L+ ++LQ + ++L Q TGL ++ WF + R +
Sbjct: 18 LKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 27.6 bits (61), Expect = 0.48
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 33 VATVCETLEESGDIERLARFLWSLPVAHPNIGELNKNEAVLRARAIVSFHSGNYREMY 90
++++ L+ DI ++R + +L + + +LR + ++ R ++
Sbjct: 1 ISSIVVELDYPVDISEVSRVMENLLLESA--------DKLLRYKGMLWIDGEPNRLLF 50
>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline
oxidase) {Streptomyces sp. [TaxId: 1931]}
Length = 290
Score = 27.3 bits (60), Expect = 1.3
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 70 EAVLRARAIVSFHSGNYREMYSILEHYKFTKDSHGKLQAMWLEAHYQEAEKLRGRPLGPV 129
+L ++ N+R++ +L + D H WL E K G V
Sbjct: 213 RRILSLGQVIE--RENFRDILFLLSKVHYKYDVHPSETYDWLI----EISKQAGDE-KMV 265
Query: 130 DKYRVRKKF 138
K + F
Sbjct: 266 VKAEQIRDF 274
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 142
Score = 26.6 bits (59), Expect = 1.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 103 HGKLQAMWLEAHYQ---EAEKLRGRPLGPVD--KYRVRKKFPLPRTI 144
HG+ A W +A YQ + + P + +FPLPR I
Sbjct: 40 HGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFI 86
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding
protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 25.5 bits (56), Expect = 1.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 176 KKRELAQATGLTPTQVGNWFKNRRQ 200
+K E+A+ + P+ + KN+R
Sbjct: 27 RKGEIARRFNIPPSTLSTILKNKRA 51
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 26.4 bits (57), Expect = 2.7
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 20 MFALPTLNFTVSQVATVCETLEE 42
+ +T + + + L
Sbjct: 413 RLTIARRVYTNDHMDYIADALIG 435
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 25.0 bits (53), Expect = 9.7
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 115 YQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNP 174
Y + G L P D Y + L + +GE+ ++E ++ Y P
Sbjct: 596 YAAFGRGHGHDLAPFDTYH--EVRGLHWPVVEGEETRWRYREGFDPYVKPGEGLRFYGKP 653
Query: 175 TKK 177
+
Sbjct: 654 DGR 656
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.411
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 829,989
Number of extensions: 38318
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 43
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)