Query psy11046
Match_columns 550
No_of_seqs 141 out of 196
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 16:43:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10291 muHD: Muniscin C-term 100.0 2.4E-68 5.2E-73 533.7 24.1 244 281-549 1-256 (257)
2 KOG2398|consensus 99.7 6.2E-16 1.3E-20 171.6 18.4 118 224-344 490-611 (611)
3 PF00928 Adap_comp_sub: Adapto 99.4 9E-11 2E-15 116.5 23.8 225 281-549 13-260 (262)
4 KOG0937|consensus 98.2 6.8E-05 1.5E-09 80.8 16.7 206 284-528 170-395 (424)
5 KOG2635|consensus 98.1 0.0008 1.7E-08 72.8 22.3 223 283-549 277-511 (512)
6 KOG2740|consensus 97.5 0.0086 1.9E-07 63.8 19.4 222 285-547 182-414 (418)
7 KOG0938|consensus 95.9 0.88 1.9E-05 48.8 19.2 233 285-547 182-443 (446)
8 KOG2677|consensus 44.4 30 0.00064 40.4 4.6 121 409-529 702-867 (922)
9 COG2351 Transthyretin-like pro 40.9 38 0.00083 31.7 4.0 54 363-417 63-116 (124)
10 cd05850 Ig1_Contactin-2 First 19.3 2.2E+02 0.0047 24.1 4.7 44 505-549 30-76 (94)
No 1
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=100.00 E-value=2.4e-68 Score=533.73 Aligned_cols=244 Identities=44% Similarity=0.758 Sum_probs=179.4
Q ss_pred cceeEEEEEEEEEEEeCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccccccCcccccccccccC
Q psy11046 281 IPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLD 360 (550)
Q Consensus 281 ~pLaaSI~EtVNA~Fkgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEkv~PN~~~I~~~~~~sq 360 (550)
+||||||+|+||||||||++++ |+|+|||+|+|++++.+.++. +.+++|||+|+++||+|+||++||++. ++
T Consensus 1 ~gl~asi~E~VnA~Fk~g~~~~--v~v~GEv~ls~~~~~~~~~~~---~~~l~~rl~n~~~le~i~pN~~~v~~~---~~ 72 (257)
T PF10291_consen 1 PGLNASITETVNAYFKGGQLSK--VKVTGEVALSYPAGISSSLTS---PPPLSFRLNNFSRLEKIAPNPQFVSSS---SQ 72 (257)
T ss_dssp -EEEEEEEEEEEEEEETTEEEE--EEEEEEEEEEEE--SSS--------SEEEEEEETGGGEEEEEE-TTTE--E---EE
T ss_pred CceeEEEEEEEEEEEECCcEEE--EEEEEEEEEecCCChhhcccC---CCcEEEEEcCcchhceeecCHhHeecC---CC
Confidence 5999999999999999999987 789999999999999987765 789999999999999999999999642 12
Q ss_pred CCCCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCC-CCCCeeEEEEeecCCCceeEEEEEEeCCCCCC
Q psy11046 361 KSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGA-ESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMG 439 (550)
Q Consensus 361 s~~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~-~~~PL~L~p~WKcE~~qTsv~IdYk~Np~~~~ 439 (550)
+ +++|+|||++|++++++ .+|||||+.+.+. .++||+|+++||||++|++|+|+|++||+.+.
T Consensus 73 ~---~~~f~~n~~~l~~~~~~-------------~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~~~tsl~l~Y~~Np~~~~ 136 (257)
T PF10291_consen 73 S---DGEFWLNMSALTSHLPK-------------QALKYQVHSDPSNLSSVPLILKPVWKCEPSQTSLILDYKLNPDAFA 136 (257)
T ss_dssp E---TTEEEE-TTTTBT-E-E-------------EEEEEEEES--------SEEEEEEEEE-SSEEEEEEEEEE-TTT--
T ss_pred C---CCcEEEehHHhhhhhhh-------------ceEEEEEeccccccCCCCeEEEeEEEeCCceEEEEEEEEeChhhcc
Confidence 1 35799999999876433 5799999984433 89999999999999999999999999997666
Q ss_pred CCcceeeEEEEEeeCCC-eeeeeecCcccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCCCCcCeEEEEEEEc-
Q psy11046 440 SPSPLLNVVLAVPVDGE-VTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIATQFNCE- 517 (550)
Q Consensus 440 ~~~~L~NV~v~vpvdg~-vT~aqSkP~gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~~~Ps~VavqF~~e- 517 (550)
.+.+|+||+|+|+|||+ |++|||||+|+|++|++||+|||+||+++++.++ |+|+|||++.+++.+|++|+|||.|+
T Consensus 137 ~~~~L~nv~~~v~l~g~~~ts~~skP~g~~~~e~~ri~Wrl~el~~~~~~~~-~kL~ARf~~~~~~~~p~~v~vkF~~~~ 215 (257)
T PF10291_consen 137 SPVPLENVVFSVPLDGGRATSAQSKPQGTWNKEKNRITWRLPELSLTSEGEG-GKLIARFMTSGGPSRPGGVEVKFEIEG 215 (257)
T ss_dssp E-EEEEEEEEEEEB-SS-EEEEEESSS--B-SSS-EEEEE-SSEEEETT----EEEEEEEEESS----SS-EEEEEEE--
T ss_pred ccceeeeEEEEEEcCCccccccccCCCccccCCCcEEEEECCcccccCCCCC-ceEEEEEECCCCCCCCceEEEEEEEcC
Confidence 66899999999999999 9999999999999999999999999999887555 99999999987777999999999999
Q ss_pred CCCcCCceEEEc---------cCceeEeeeeEEeeeeeeee
Q psy11046 518 GTTLSGAEFELI---------GPGYRVSLVKRKFMSGKLVL 549 (550)
Q Consensus 518 gstlSGv~iel~---------gsgyr~slvkrrf~sGkYi~ 549 (550)
|.++||++|+++ |++|++++|||||++|||+|
T Consensus 216 ~~~~sg~~i~~~~~~~~~dp~~~~w~~~~~~r~~~sGkY~~ 256 (257)
T PF10291_consen 216 GSTLSGLGISLVYQDDEEDPPGGGWRLVLVKRKLVSGKYIA 256 (257)
T ss_dssp -S-SS----EEEEEESSS-TT----EE-EEEEEEEEEEEE-
T ss_pred CCcccCcEEEEeecccccCCCCCcceEEEEEEEEeeeEEec
Confidence 889999999999 88999999999999999998
No 2
>KOG2398|consensus
Probab=99.69 E-value=6.2e-16 Score=171.60 Aligned_cols=118 Identities=45% Similarity=0.751 Sum_probs=94.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCcccccCCccccccC----ccccccccCCCCcccccCCCcceeEEEEEEEEEEEeCCc
Q psy11046 224 STISLPRPPSRRSEGRGHISPLNSTLTRSESEFKTSG----VSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTD 299 (550)
Q Consensus 224 ~~~~~pr~~~~~~~~~~~~s~s~~~~~~s~~~~~~~~----~~~~g~SRGPsp~t~~~~d~~pLaaSI~EtVNA~Fkgg~ 299 (550)
..++.++|.++.. ..++++++....+.++..+++.. .+. |.+|||+|+++|.+|.+||++||+|+|||||++.+
T Consensus 490 ~~~s~~~p~s~~p-~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~~~g~s~~~~~~s~~~~i~~a~~~~~~~~~~~~~ 567 (611)
T KOG2398|consen 490 DPISVAMPDSSNP-LTDADSPSVDDESPSLTKTSRGNILNLTGV-GSSRGPSPITLGGSDGLPIAAAFAEIVHAYFEGPD 567 (611)
T ss_pred ccccccCCCCCCc-hhhhcccccccccccccccCcccccccccc-ccCCCCCcccCCCCCcchhhhhhhhcchhhhcCCC
Confidence 3444455544433 34445555555444455555543 334 99999999999999999999999999999999999
Q ss_pred ceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccc
Q psy11046 300 ETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIEN 344 (550)
Q Consensus 300 ~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEk 344 (550)
.. |+|+++|+|+++|++||...+.+|+++..+.||+.|+..|++
T Consensus 568 ~s-~~~~~~~~~~~s~~~~i~~~~~~n~~~~~~~fr~~~~~~~~~ 611 (611)
T KOG2398|consen 568 ES-CIVKDTGEMMLSFPAGITGLVAGNPDPARLDFRLLNVRNIEN 611 (611)
T ss_pred cc-eeeeeeEEEEEeeccchhhhhcCCCCccccccccccceeccC
Confidence 99 999999999999999988888899999999999999988874
No 3
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=99.39 E-value=9e-11 Score=116.45 Aligned_cols=225 Identities=18% Similarity=0.271 Sum_probs=144.8
Q ss_pred cceeEEEEEEEEEEEe-CCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCC-------ccccccccCcccc
Q psy11046 281 IPLAVAFHEIIHSYFR-GTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNI-------SHIENMLPNKQLI 352 (550)
Q Consensus 281 ~pLaaSI~EtVNA~Fk-gg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~-------s~LEkv~PN~~~I 352 (550)
=.|-.-|.|.|||.+. +|.+..|. |.|+|.+.-- |. .-+.+.++|++. ..|+++.-.+..=
T Consensus 13 nei~vdv~E~i~~~~~~~G~~~~~~--v~G~v~~~~~------l~---g~p~i~l~l~~~~~~~~~~~~l~~~~fH~cV~ 81 (262)
T PF00928_consen 13 NEIFVDVVEKISAVLDRDGNILSSE--VKGSVQCKSF------LS---GMPEIKLTLNNPLVVSKNGIKLDDVSFHPCVD 81 (262)
T ss_dssp EEEEEEEEEEEEEEEETTSEEEEEE--EEEEEEEEEE-------S---ST-EEEEEESSSCCCTSSSBEESEEEEETTEE
T ss_pred ceEEEEEEEEEEEEEccCCcEEEEE--EEEEEEEEEe------CC---CCCeEEEEecCccccccCceeeeceeeccccC
Confidence 3677899999999994 78887754 9999998321 11 234778888876 4444433322220
Q ss_pred cccccccCCCCCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEEeec-CCCceeEEEEE
Q psy11046 353 NIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKC-EPTHTDLKVDY 431 (550)
Q Consensus 353 ~~~~~~sqs~~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~WKc-E~~qTsv~IdY 431 (550)
.. .-...+...|-+ |. -...+|+|++... ...||.+...|+- ......+.|.|
T Consensus 82 ~~------~~~~~~~i~f~P--------------Pd---g~f~Ll~Yr~~~~---~~~P~~i~~~~~~~~~~~~~v~i~~ 135 (262)
T PF00928_consen 82 LS------KFESDRVISFIP--------------PD---GEFTLLRYRVSSN---SPLPFKITCWVSEKSSGRFEVTIEL 135 (262)
T ss_dssp CC------CCCSHTEEEE-----------------S---EEEEEEEEEEESS---S--SEEEEEEEEEETTTEEEEEEEE
T ss_pred cc------ccccccceecCC--------------CC---ceEEEEEEEccCC---CCCCcEEEEEeccCCCceEEEEEEe
Confidence 00 001122333322 11 1456899999863 7899999998887 44455777777
Q ss_pred EeCCCCCCCCcceeeEEEEEeeCCCeeeeeec---CcccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCCCCc-
Q psy11046 432 KYNNHAMGSPSPLLNVVLAVPVDGEVTNVQAK---PNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTP- 507 (550)
Q Consensus 432 k~Np~~~~~~~~L~NV~v~vpvdg~vT~aqSk---P~gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~~~P- 507 (550)
+.|. .....++||.|.+|+-..+.++... -.+.|..+++.+.|+|+.+.... ...|.+.+++......+
T Consensus 136 ~~~~---~~~~~~~~v~I~iplP~~~~~~~~~~~~G~~~~~~~~~~l~W~I~~~~~~~----~~~l~~~l~~~~~~~~~~ 208 (262)
T PF00928_consen 136 ESNF---PNKISLENVVIRIPLPPGTSSPSIESSDGSAEYDEEENALVWKIKKLPGGS----ESTLSGTLEFSSPSSVPS 208 (262)
T ss_dssp EE-S----TTSEEEEEEEEEE--TTEEEEEEEESSSEEEEETGCTEEEEEEEEEETSE----EEEEEEEEEEEEECCSS-
T ss_pred cccC---CCCceeceEEEEeecCCccccceeeecCceEEEEccCCEEEEEECCccCcc----cccEEEEEEecCCCcccc
Confidence 7773 2246899999999997565555543 33577899999999999887633 24577777665333332
Q ss_pred ----CeEEEEEEEcCCCcCCceEEE---cc--CceeEee-eeEEeeeeeeee
Q psy11046 508 ----STIATQFNCEGTTLSGAEFEL---IG--PGYRVSL-VKRKFMSGKLVL 549 (550)
Q Consensus 508 ----s~VavqF~~egstlSGv~iel---~g--sgyr~sl-vkrrf~sGkYi~ 549 (550)
.++.|.|.+.+.++||+.|+- .+ .+|+..- ||....+|+|-+
T Consensus 209 ~~~~~pi~v~F~~~~~~~Sgl~V~~l~v~~~~~~~~~~k~vky~t~s~~Y~i 260 (262)
T PF00928_consen 209 DWSFFPISVEFTIPGYTLSGLKVRSLDVVNEDENYKPYKWVKYVTKSGSYEI 260 (262)
T ss_dssp S-----EEEEEEESTSETTT-EEEEEEEE-SSCGGGSEEEEEEEEEEEEEEE
T ss_pred cccceeEEEEEEeCCcccCCCEEEEEEeEecCCCCCCcccEEEEEEcCcEEE
Confidence 369999999999999999974 34 5677755 788888999964
No 4
>KOG0937|consensus
Probab=98.15 E-value=6.8e-05 Score=80.84 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=129.3
Q ss_pred eEEEEEEEE-EEEeCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccccc--cCc--------ccc
Q psy11046 284 AVAFHEIIH-SYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENML--PNK--------QLI 352 (550)
Q Consensus 284 aaSI~EtVN-A~Fkgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEkv~--PN~--------~~I 352 (550)
=-.|+|.|| .++++|.+-+ +.|.|+|.+-- -|...| .+.|=|+.---+++-. -|. +|.
T Consensus 170 flDViE~Vs~l~~~~G~vl~--s~i~G~I~~k~------~LsGmP---elrl~ln~~~~~~~~~~~~~s~~v~ledi~fh 238 (424)
T KOG0937|consen 170 FLDVIESVSLLYDSNGIVLL--SEIVGTIKLKC------YLSGMP---ELRLGLNDKVLFDKQGPRSKSKGVELEDIKFH 238 (424)
T ss_pred EEEhhhhhhHhhhcCCcEEE--eeeeeEEEEEE------EcCCCc---eeeeecCcccccccccccccCcceEeeecccc
Confidence 356899999 6668888876 56999999831 122222 4445444332222211 011 122
Q ss_pred cccccccCCCCCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEEeecCCCceeEEEEEE
Q psy11046 353 NIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYK 432 (550)
Q Consensus 353 ~~~~~~sqs~~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~WKcE~~qTsv~IdYk 432 (550)
.++.. ..-+.+..+.|-++ --+.+++.||+... --||+.-..-.-+..+.++-|..|
T Consensus 239 ~~v~l--~~fd~dr~i~FiPP-----------------dGeF~Lm~Y~ls~~----vkPli~~~~~~~~~~~~ri~i~~K 295 (424)
T KOG0937|consen 239 ECVRL--SRFDNDRTISFIPP-----------------DGEFELMRYRLSTH----VKPLIWFYQLIEEHSRSRIEVMVK 295 (424)
T ss_pred eeech--hhccCCceEEecCC-----------------CCceEEEEEEecCC----CCCeEEeeeeeeeccceeEEEEEe
Confidence 22210 00011122222211 13567999999973 448887666666666666666666
Q ss_pred eCCCCCCCCcceeeEEEEEeeCCCeeeeee---cCcccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCC-----
Q psy11046 433 YNNHAMGSPSPLLNVVLAVPVDGEVTNVQA---KPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGP----- 504 (550)
Q Consensus 433 ~Np~~~~~~~~L~NV~v~vpvdg~vT~aqS---kP~gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~----- 504 (550)
+-..+. ....-.||.|..|+-+.++++.= ..++.|.+|++-+.|+|...--. ..-.++|+|.+..-.
T Consensus 296 ~~~~fk-~~~~a~~v~I~iP~P~~a~~~~fk~s~G~~~~~~e~~~l~W~I~~~~gg----~e~~~r~~~~lp~~~~e~~~ 370 (424)
T KOG0937|consen 296 LREQFK-SRSSANNVEICIPVPDDASSPSFKTSLGSAKYDPEKSALRWTIKKFVGG----KEYSLRARMDLPSEEHEEQC 370 (424)
T ss_pred chhhcC-CccccceEEEEeeCCCccccceEeccCCceeeecccceEEEEeccccCC----ceEEEEEeecCCccccCCCC
Confidence 554433 35678899999999877665543 36699999999999999987632 346899999874111
Q ss_pred -CCcCeEEEEEEEcCCCcCCceEEE
Q psy11046 505 -GTPSTIATQFNCEGTTLSGAEFEL 528 (550)
Q Consensus 505 -~~Ps~VavqF~~egstlSGv~iel 528 (550)
..-.++.|+|.|-..|.||+.|+.
T Consensus 371 ~~~~~pi~v~FeIp~~T~SgiqVry 395 (424)
T KOG0937|consen 371 TEGLGPIKVKFEIPYFTVSGIQVRY 395 (424)
T ss_pred cccCCceEEEEEecccccCCeEEEE
Confidence 122459999999999999999984
No 5
>KOG2635|consensus
Probab=98.06 E-value=0.0008 Score=72.85 Aligned_cols=223 Identities=15% Similarity=0.275 Sum_probs=141.2
Q ss_pred eeEEEEEEEEEEE-eCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCc---cccccccCcccccccccc
Q psy11046 283 LAVAFHEIIHSYF-RGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNIS---HIENMLPNKQLINIEENK 358 (550)
Q Consensus 283 LaaSI~EtVNA~F-kgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s---~LEkv~PN~~~I~~~~~~ 358 (550)
+...|=|.+|+.| |+|.+... -+.|.|+|.- .+..-..+.+||.|-. -.=|+-||-
T Consensus 277 v~i~ieEkln~~~~RDGgi~s~--E~qG~lsLrI---------~d~e~~~i~lkl~n~~~~g~q~ktHPNl--------- 336 (512)
T KOG2635|consen 277 VHIVIEEKLNVRLSRDGGIKSG--EVQGTLSLRI---------KDEEYGDIELKLANGRDKGTQLKTHPNL--------- 336 (512)
T ss_pred EEEEEeeeEeEEEcccCCccce--eeeeeEEEEE---------ccccccceEEEEcCCCCcceeeeeCCCc---------
Confidence 7788999999999 68888753 5899999853 2344567788887722 122233331
Q ss_pred cCCCCCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEEeecCCC-ceeEEEEEEeCCCC
Q psy11046 359 LDKSSDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPT-HTDLKVDYKYNNHA 437 (550)
Q Consensus 359 sqs~~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~WKcE~~-qTsv~IdYk~Np~~ 437 (550)
|...| .+- .|.. |++--..=|. --+|++||++... .+....||-+. -|--|.. ..+|+|.|.+-
T Consensus 337 -----DK~~f-~s~-s~ig-lk~~~K~FPv--n~~VGvLkWR~~~-~des~iPlTin-cWPSes~~g~dV~iEYe~~--- 401 (512)
T KOG2635|consen 337 -----DKKVF-LSS-SLIG-LKRPEKPFPV--NSDVGVLKWRMVD-EDESEIPLTIN-CWPSESGNGYDVNIEYEAV--- 401 (512)
T ss_pred -----chhhh-ccc-cccc-cccCCCCCCc--CCcceEEEEeecc-cccccCceEEE-eccccCCCCeEEEEEEeeh---
Confidence 11122 111 1111 2222222222 2479999999987 66789999986 5755554 35999999983
Q ss_pred CCCCcceeeEEEEEeeCCCeeeeeecCcccccCC--CceeeEecCCccCCCCCCCceeEEEEEeccCC-CCCcCeEEEEE
Q psy11046 438 MGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPE--TNRAIWKFTDLSQHSENHGIGCVKARFELKNG-PGTPSTIATQF 514 (550)
Q Consensus 438 ~~~~~~L~NV~v~vpvdg~vT~aqSkP~gtwn~e--~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G-~~~Ps~VavqF 514 (550)
....|+||.|++|+--.++-....=.|+|+-+ ++-+-|.|+.|. ++ .+|+|. |.+..+ +..==|++|+|
T Consensus 402 --~~~eL~dV~i~iPlP~~iapsv~~~Dge~~~~~~~~~leW~I~~Ia-~N---~SGslE--Fs~~~~~~~~fFPl~VsF 473 (512)
T KOG2635|consen 402 --LECELNDVIITIPLPANIAPSVGECDGEYRYDERKNVLEWSIGVIA-KN---FSGSLE--FSCPASDPDGFFPLSVSF 473 (512)
T ss_pred --hcccccceEEEeecccccCCccceecceEEeccccceeEEEeeeec-cC---CCCcEE--EeecCCCCCceeeEEEEE
Confidence 24799999999996433321111223777554 455999999993 32 357786 443323 23334599999
Q ss_pred EEcCCCcCCceEEEc---cC-ceeEeeeeEEeeeeeeee
Q psy11046 515 NCEGTTLSGAEFELI---GP-GYRVSLVKRKFMSGKLVL 549 (550)
Q Consensus 515 ~~egstlSGv~iel~---gs-gyr~slvkrrf~sGkYi~ 549 (550)
+.+. ...||-++-+ ++ .-.-..++..|...||..
T Consensus 474 ~s~~-~ftgl~vqkVv~~~~~~~~~y~~~t~f~~dky~V 511 (512)
T KOG2635|consen 474 TSDT-VFTGLFVQKVVRNDGHAPVRYSVETTFEVDKYEV 511 (512)
T ss_pred Eecc-cccceEEEEEEEcCCCCCceeEEEEEEEeeeeEe
Confidence 9765 7899988732 33 333445788899999964
No 6
>KOG2740|consensus
Probab=97.53 E-value=0.0086 Score=63.82 Aligned_cols=222 Identities=15% Similarity=0.204 Sum_probs=133.7
Q ss_pred EEEEEEEEEEE-eCCcceeeeEEEEEEEEEeecCCccccccCCCCCcceEEEEcCCccccccccCcccccccccccCCCC
Q psy11046 285 VAFHEIIHSYF-RGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSS 363 (550)
Q Consensus 285 aSI~EtVNA~F-kgg~~skc~VkVtGElaLSFpa~iv~~lt~np~p~~l~fRL~n~s~LEkv~PN~~~I~~~~~~sqs~~ 363 (550)
.-+.|.|+|.| |.|....|. |-|+|-+-- -|+.+| -|.+.|.|...|+.+--.+..=..
T Consensus 182 vdvlEeidai~~k~gslv~~e--I~g~vd~~~------qLsgmP---dltlsl~np~~L~dvsfHpcVr~k--------- 241 (418)
T KOG2740|consen 182 VDVLEEIDAIVDKKGSLVFGE--IQGIVDVCS------QLSGMP---DLTLSLNNPRLLGDVSFHPCVRYK--------- 241 (418)
T ss_pred hhhhheeheEecCCCCEEEEE--EEEEEEEEE------eecCCC---ceEEEccCccccCCcccccceeec---------
Confidence 45789999999 567766664 777766521 233443 456677776655554433332221
Q ss_pred CCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEEeecCCCceeEEEEEEeCCCCCCCCcc
Q psy11046 364 DSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSPSP 443 (550)
Q Consensus 364 ~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~WKcE~~qTsv~IdYk~Np~~~~~~~~ 443 (550)
..+++=+.++| |. =-|--++.|++.. +.....|+.+...=+..... ..+|+...-+.... .-+
T Consensus 242 -rwe~~~~lsFI-----------PP--DGkFrLlsy~v~~-~~~v~~pvyv~~~i~l~~~~-~~ri~~tvg~~~~~-gK~ 304 (418)
T KOG2740|consen 242 -RWESHSVLSFI-----------PP--DGKFRLLSYRVDA-QNQVAIPVYVKNSISLDSNH-QGRISLTVGPKKKM-GKT 304 (418)
T ss_pred -ccccccceEEc-----------CC--CCcEEEEEEEEeh-hhccccceEEeeeeccCCCc-eEEEEEeccccccc-cce
Confidence 11222111111 00 0133488999997 45668899999998888877 56666665552211 234
Q ss_pred eeeEEEEEeeCCCeeeeeecCc---ccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCCCCc---CeEEEEEEEc
Q psy11046 444 LLNVVLAVPVDGEVTNVQAKPN---VQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPGTP---STIATQFNCE 517 (550)
Q Consensus 444 L~NV~v~vpvdg~vT~aqSkP~---gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~~~P---s~VavqF~~e 517 (550)
+.-+.|.+.....+.+|.-.+. +++..-.+.++|-++.+.-. -.-.|+.-..++.|-.++ .++.+||.+.
T Consensus 305 ie~itVt~~~pn~i~~~~k~~~~g~~~~~~~~k~l~W~~~~i~tg----~lp~Lkg~~~~e~~~sk~~~l~t~~Lqykiq 380 (418)
T KOG2740|consen 305 IELITVTVQDPNEIAYASKILTHGTFTNSIIMKQLTWTFGSIATG----KLPVLKGTINLEPGFSKKVDLPTLSLQYKIQ 380 (418)
T ss_pred eEeEEEEecCccceeeeecccccceeEeecccceeEEEeecccCC----cccccccccccCCCCCccccCcccceeeeee
Confidence 4444444444334556655555 45566678899999665431 112455555666666655 3499999999
Q ss_pred CCCcCCceEEE---ccCcee-EeeeeEEeeeeee
Q psy11046 518 GTTLSGAEFEL---IGPGYR-VSLVKRKFMSGKL 547 (550)
Q Consensus 518 gstlSGv~iel---~gsgyr-~slvkrrf~sGkY 547 (550)
|.++||+-||- .|.-|+ ..-+|.+..+|++
T Consensus 381 g~alsglkVe~Ldm~~~~~k~yKGvKy~t~agnf 414 (418)
T KOG2740|consen 381 GQALSGLKVERLDMYGEPYKPYKGVKYKTKAGNF 414 (418)
T ss_pred eeeccceEEEeeeecCCCCccccceEEEEeeeeE
Confidence 99999999993 343232 3457778888876
No 7
>KOG0938|consensus
Probab=95.90 E-value=0.88 Score=48.81 Aligned_cols=233 Identities=18% Similarity=0.254 Sum_probs=129.9
Q ss_pred EEEEEEEEEEE-eCCcceeeeEEEEEEEEEeecCCccccccCCCC-----CcceEEEEcCCccccccccCcccccccccc
Q psy11046 285 VAFHEIIHSYF-RGTDETRCQVKMSGDMMLSFPAGIVSILTSNPS-----PAQLKFKVSNISHIENMLPNKQLINIEENK 358 (550)
Q Consensus 285 aSI~EtVNA~F-kgg~~skc~VkVtGElaLSFpa~iv~~lt~np~-----p~~l~fRL~n~s~LEkv~PN~~~I~~~~~~ 358 (550)
--|.|.||-.. .+|.+-+|. |.|.|.|-- .|...|. -+.|-|.++.-+ -..=.-|..+.....
T Consensus 182 ldvvErvNlLmS~~GnVLrs~--VsG~V~mk~------~LSGmPeckfGlNDkl~~e~kq~e-sks~~~n~~~~sks~-- 250 (446)
T KOG0938|consen 182 LDVVERVNLLMSSDGNVLRSD--VSGTVDMKT------HLSGMPECKFGLNDKLGMESKQSE-SKSDFGNKNFPSKSG-- 250 (446)
T ss_pred eEehheeeeEEcCCCCEEEee--cccEEEEEE------eccCCcccccccCcccceeecccc-ccccccccCCCcccC--
Confidence 45889999999 478888986 899987721 1223331 122333332211 111122333333221
Q ss_pred cC-CCCCCccEE-------EechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEEeecCCC-ceeEEE
Q psy11046 359 LD-KSSDSMTCE-------FNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPT-HTDLKV 429 (550)
Q Consensus 359 sq-s~~~~~~F~-------~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~WKcE~~-qTsv~I 429 (550)
.+ -..++..|+ ||-.++.+++ -| --.++++||+++-+ -..|+.+.|.-+--.- .-+++|
T Consensus 251 ~g~v~leDc~FHqCV~L~kFn~eh~IsFv------PP---DGe~ELMkYr~~en---InlPFrV~PiV~el~r~kie~ri 318 (446)
T KOG0938|consen 251 KGSVLLEDCTFHQCVRLDKFNSEHIISFV------PP---DGEFELMKYRVTEN---INLPFRVTPIVTELGRTKIEYRI 318 (446)
T ss_pred CceEEeeccchheeeccccccccceEEEe------CC---CCceEeEeeeeccC---cccceEeeeheecccceeEEEEE
Confidence 11 012222332 2222222211 11 13478999999853 3678888877653332 223344
Q ss_pred EEEeCCCCCCCCcceeeEEEEEeeCCCee--eeee-cCcccccCCCceeeEecCCccCCCCCCCceeEEEEEeccCCCC-
Q psy11046 430 DYKYNNHAMGSPSPLLNVVLAVPVDGEVT--NVQA-KPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELKNGPG- 505 (550)
Q Consensus 430 dYk~Np~~~~~~~~L~NV~v~vpvdg~vT--~aqS-kP~gtwn~e~~ri~WklpeLs~~se~~g~G~L~ARF~~t~G~~- 505 (550)
..|.+ +.+ ..--.+|+|.+||-..+. +.+. +=.|-+.++.+.|.|||+...--.| ..|-|-.++.+--+
T Consensus 319 ~iks~--f~~-kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE----~tlsAevels~Tt~n 391 (446)
T KOG0938|consen 319 TIKSL--FPP-KLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTE----STLSAEVELSDTTQN 391 (446)
T ss_pred EEecc--CCc-hhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCccc----ceeEEEEEeccCccc
Confidence 44433 221 234457888888765432 3332 4558899999999999998643333 47889888753321
Q ss_pred ----CcCeEEEEEEEcCCCcCCceEEEc-----cCceeEee-eeEEeeeeee
Q psy11046 506 ----TPSTIATQFNCEGTTLSGAEFELI-----GPGYRVSL-VKRKFMSGKL 547 (550)
Q Consensus 506 ----~Ps~VavqF~~egstlSGv~iel~-----gsgyr~sl-vkrrf~sGkY 547 (550)
.--++++-|.+-.=+-|||-+... .++|+-.. ||---.+|-|
T Consensus 392 kq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsy 443 (446)
T KOG0938|consen 392 KQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSY 443 (446)
T ss_pred cccccCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEeccccee
Confidence 123589999999888999998742 35566544 4444446766
No 8
>KOG2677|consensus
Probab=44.43 E-value=30 Score=40.40 Aligned_cols=121 Identities=19% Similarity=0.329 Sum_probs=74.7
Q ss_pred CCCeeEEEEeecCCCceeEEEEEEeCCCCCC-----CCcceeeEEEEEeeCCC------------eeeeeecCc--cc--
Q psy11046 409 SCPFQLVAHWKCEPTHTDLKVDYKYNNHAMG-----SPSPLLNVVLAVPVDGE------------VTNVQAKPN--VQ-- 467 (550)
Q Consensus 409 ~~PL~L~p~WKcE~~qTsv~IdYk~Np~~~~-----~~~~L~NV~v~vpvdg~------------vT~aqSkP~--gt-- 467 (550)
..|+-|+.+-+.......|.+..+....+-. ...+-+||.|..||-.. +.++.+|=. |.
T Consensus 702 ~lpftlks~~~V~Ga~VEvq~~~~mat~~qr~rd~~~~vpCenI~IrfPVPs~WIk~fr~e~~~g~kSlkaK~nR~a~~g 781 (922)
T KOG2677|consen 702 TLPFTLKSATSVNGAEVEVQSWLRMATGFQRNRDPLTQVPCENIMIRFPVPSEWIKNFRRESVLGEKSLKAKVNRGASFG 781 (922)
T ss_pred cCceeeeeeeeeccceeehHHHHHHHhhhhhccCccccCcccceeEeccCcHHHHHHHHHHhhhccchhhhhhccccccc
Confidence 6677777776666655444433332221111 23466788888877432 223332211 11
Q ss_pred -------------------ccCCCceeeEecCCccCCCC-CCCceeEEEEEeccCCCCCcCe----EEEEEEEcCCCcCC
Q psy11046 468 -------------------WLPETNRAIWKFTDLSQHSE-NHGIGCVKARFELKNGPGTPST----IATQFNCEGTTLSG 523 (550)
Q Consensus 468 -------------------wn~e~~ri~WklpeLs~~se-~~g~G~L~ARF~~t~G~~~Ps~----VavqF~~egstlSG 523 (550)
+--.-+.|+|||+.|..+.. .+-+.-|..||++......|+. +.|+|+.-.++.|.
T Consensus 782 sl~~~~sepvi~vt~G~AKYEhay~siVWrI~RLPdKnsa~~hpHcl~c~lELgSd~evPs~f~p~~~V~FsmP~t~aS~ 861 (922)
T KOG2677|consen 782 SLSVSGSEPVIRVTLGTAKYEHAYNSIVWRINRLPDKNSASGHPHCLFCHLELGSDREVPSRFAPHVNVEFSMPTTSASK 861 (922)
T ss_pred chhhccCCceEEEeecchhhHHhhhhheeecccCCccccccCCCeeEEEEEeccccccCchhhccccceeeecccccccc
Confidence 11223569999999886542 2336789999999777777765 89999999999888
Q ss_pred ceEEEc
Q psy11046 524 AEFELI 529 (550)
Q Consensus 524 v~iel~ 529 (550)
..|.-+
T Consensus 862 t~VRSi 867 (922)
T KOG2677|consen 862 TSVRSI 867 (922)
T ss_pred ceeeee
Confidence 777643
No 9
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=40.92 E-value=38 Score=31.67 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCCccEEEechhHHHHHHHhhccCCCCccceeeeEEEEEecCCCCCCCCeeEEEE
Q psy11046 363 SDSMTCEFNMSALSSLLRKQCEQNPSASYFNVDILKYQIKSKPGAESCPFQLVAH 417 (550)
Q Consensus 363 ~~~~~F~~nm~~L~s~L~k~aeqnPtasy~nv~~lKYqV~~~~g~~~~PL~L~p~ 417 (550)
...|+|.+--. .-.|++....+.+.-+|+.+.-+.+.+...++..++||+|.|+
T Consensus 63 ~~~G~Y~l~F~-~gdYf~~~g~~~~~~~Fl~~V~vrF~iad~~~HYHVPLLlSPy 116 (124)
T COG2351 63 LATGIYELVFH-TGDYFKSRGVQLADPPFLDVVPVRFGIADVDEHYHVPLLLSPY 116 (124)
T ss_pred cccceEEEEEE-cchhhhccCcccCCCCccceEEEEEEEcCCCCceeeeeEecCc
Confidence 44567776543 3467777667777778999999999999756789999999986
No 10
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=19.30 E-value=2.2e+02 Score=24.07 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCcCeEEEEEEEcCCCcC---CceEEEccCceeEeeeeEEeeeeeeee
Q psy11046 505 GTPSTIATQFNCEGTTLS---GAEFELIGPGYRVSLVKRKFMSGKLVL 549 (550)
Q Consensus 505 ~~Ps~VavqF~~egstlS---Gv~iel~gsgyr~slvkrrf~sGkYi~ 549 (550)
+.|.+ .++|..+|..+. +..+.+.++...+..+.++--+|.|.|
T Consensus 30 g~P~p-~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 30 ASPPA-TYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQC 76 (94)
T ss_pred eCCCC-EEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEE
Confidence 44544 577877776542 223333333333333333456888887
Done!