RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11046
(550 letters)
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor,
endocytosis, phosphoprotein; HET: 1PG; 2.80A
{Saccharomyces cerevisiae}
Length = 328
Score = 210 bits (536), Expect = 1e-63
Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 66/360 (18%)
Query: 210 PPKQTARMTPTLTSSTISLPRPPSRRSEGRGHISPLNSTLTRSESEFKTSGVSTTNSSRG 269
++ + P S ++ RP S L+S +T E ++ S G
Sbjct: 7 HHHHSSGLVPR--GSHMASERPVS----------TLSSQITGELRELNPQATGSSTSLVG 54
Query: 270 PSPLTIGMSD--TIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNP 327
S D L + E++++ F+ Q+ G++ L++ + ++P
Sbjct: 55 QSLFQHSSLDTSQFGLNASIAEVLNASFKDGMLQNSQL--IGEIALNYLPNS---VMNSP 109
Query: 328 SPAQLKFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSALSSLLRKQCEQNP 387
P + +++N + E ++ N+ I + N S + S
Sbjct: 110 LPIGINLRINNGAKFEKVILNQAFIE--------RVAPEEFKVNPSFIDS---------- 151
Query: 388 SASYFNVDILKYQIKSKPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNH--AMGSPSPLL 445
+ +KY IK P + W+ E + + K + S +
Sbjct: 152 ----RTLGAIKYSIKE----PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIE 203
Query: 446 NVVLAVPVDG-EVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCVKARFELK-NG 503
++V+ V +DG T+ +KP + E R W+F + + N + ARF
Sbjct: 204 DLVVFVNIDGANATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGLA 263
Query: 504 PGTPSTIATQFNCEGTTLSGAEFELIGPGYRVSL-----------------VKRKFMSGK 546
+ + T+F T G G ++ KR +G
Sbjct: 264 HESAKGVITKFTISETDNVALPHSGAGSGITLTCQELDENNPFGGEWLDVNTKRTLTTGN 323
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.9 bits (199), Expect = 5e-16
Identities = 76/442 (17%), Positives = 129/442 (29%), Gaps = 151/442 (34%)
Query: 169 NTPPP-------SSSTSTEKTTSDSSSTSKYTNLG-DLFSEVGEIVPALPPKQTARMTPT 220
T S+ + + + K G ++ + P+ P +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--PSNTPDK-----DY 230
Query: 221 LTSSTISLPRPPSRRSEGRG-----HISPLNSTLTRSESEFKTSGVSTTNSSRG-PSPLT 274
L S IS P G H L + E ++ T S+G + +
Sbjct: 231 LLSIPISCP--------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 275 IGMSDTIPLAVAFHEIIHSYFR-----GTDETRCQVKMSGDMMLSFPAGIVSILTSN--- 326
I +D+ +F + G RC S P I+ N
Sbjct: 283 IAETDSWE---SFFVSVRKAITVLFFIG---VRCYEAYP---NTSLPPSILEDSLENNEG 333
Query: 327 -PSPAQLKFKVSNIS------HIE--NM-LP-NKQ----LINIEENKLDKSSDSMTCEFN 371
PSP +SN++ ++ N LP KQ L+N + +
Sbjct: 334 VPSPM---LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--------GAKN----LV 378
Query: 372 MS-------ALSSLLRKQ-----CEQN--PSASYFNVDILKYQIKSKPGAE----SCPFQ 413
+S L+ LRK +Q+ P F+ + K K + PF
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIP----FS------ERKLKFSNRFLPVASPF- 427
Query: 414 LVAHWKC-EPTHTDLKVDYKYNNHAMGSPSPLLNVVLAVPV----DGEVTNVQA-KPNVQ 467
H P + D NN + + + +PV DG +++ ++
Sbjct: 428 ---HSHLLVPASDLINKDLVKNNVSFNAKD------IQIPVYDTFDGS--DLRVLSGSI- 475
Query: 468 WLPETNRAI------WKFTDLSQHSENHGIGCVKARFELKNGPGTPSTIA--TQFNCEGT 519
I W +Q H + GPG S + T N +GT
Sbjct: 476 -SERIVDCIIRLPVKW--ETTTQFKATHILDF---------GPGGASGLGVLTHRNKDGT 523
Query: 520 ---TLSGAEFELIGP----GYR 534
+ + I P G++
Sbjct: 524 GVRVIVAGTLD-INPDDDYGFK 544
Score = 34.6 bits (79), Expect = 0.11
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 40/116 (34%)
Query: 435 NHAMGSPSPLLNVVLAVPVDGEVTNVQAKPNVQWLPETNRAIWKFTDLSQHSENHGIGCV 494
+ G PSP+L++ + + +V + K N LP + + I
Sbjct: 329 ENNEGVPSPMLSIS-NLTQE-QVQDYVNKTN-SHLPA-GKQV-------------EIS-- 369
Query: 495 KARFELKNGPGTPSTIATQFNCEG--TTLSGAEFEL----IGPGY---RVSLVKRK 541
L NG G +L G L G R+ +RK
Sbjct: 370 -----LVNGA-------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 29.2 bits (65), Expect = 4.7
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 19/74 (25%)
Query: 387 PSASYFNVDILKYQ-IKSKPGA---------ESCPFQLVAHWKCEPTHTDLK-VDYKYNN 435
P+AS+F L+ Q K P + P +LV + L V
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--------LGYVSSLVEP 74
Query: 436 HAMGSPSPLLNVVL 449
+G +LN+ L
Sbjct: 75 SKVGQFDQVLNLCL 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 9e-12
Identities = 81/568 (14%), Positives = 159/568 (27%), Gaps = 156/568 (27%)
Query: 34 PEVDEEGYRI-----RPKEEMWDAEKFYSSSDSDSDDDRD---HKIHVEIKPLSANTNQI 85
+ R+ +EEM +KF + I E + S T
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEM--VQKFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 86 SASVDELRVTAGNLTLSPLSV------KERRNSIDINPEVNFSQSPHKKI--NG------ 131
D R+ N + +V + R ++ P K + +G
Sbjct: 113 IEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQAL-------LELRPAKNVLIDGVLGSGK 163
Query: 132 --LAE---LNHALMKTMGD-----SASTEDKPD-----------HVDPTEPPLGLLSGNT 170
+A L++ + M + + P+ +DP S N
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 171 PPPSSSTSTEKTTSDSSSTSKYTN----LGDLFSEVGEIVPALPPK-QTARMTPTLTSST 225
S E + Y N L ++ + + A + LT+
Sbjct: 224 KLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKI-----LLTTRF 274
Query: 226 ISLPRPPSRRSEGRGHIS--PLNSTLTRSESE--F-KTSGVSTTNSSR---GPSPLTIGM 277
+ + HIS + TLT E + K + R +P + +
Sbjct: 275 KQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 278 SDTIPLAVAFHEIIH--SYFR--GTDETRCQVKMSGD-----------MMLS-FPAGIVS 321
+A + + + ++ D+ ++ S + LS FP
Sbjct: 333 -----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AH 386
Query: 322 ILTSNPSPAQL------KFKVSNISHIENMLPNKQLINIEENKLDKSSDSMTCEFNMSAL 375
I P L S++ + N L L ++K T +
Sbjct: 387 I------PTILLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQPKESTISIPS--I 431
Query: 376 SSLLRKQCEQNPS------ASYFNVDILKYQIKSKPGAESCPFQLVAH--WKCEPTH--- 424
L+ + E + Y P + + + H E
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 425 --TDLKVDY-------KYNNHAMGSPSPLLNVVLAVPV-DGEVTNVQAKPN------VQW 468
+ +D+ ++++ A + +LN + + + + K + +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 469 LP--ETNRAIWKFTDLSQ---HSENHGI 491
LP E N K+TDL + +E+ I
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAI 579
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.23
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 19 SDEKENSEPKSEAPTPEVDEEGYRIRP------KEEMWDAEK-FYSSSDSD 62
+ + E + +A +++E + + K A+K FY D+D
Sbjct: 104 ASKVMEQEWREKA-KKDLEE-WNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 28.4 bits (64), Expect = 2.6
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 148 STEDKPDHV-----DPTEPPLGLLSGNTPPPSSSTSTEKT---TSDSSSTSK 191
+ + P P LG + + S+ + T + +
Sbjct: 51 QLNCNKESLEIIDGLPGSPVLGKICEGSLMDYRSSGSIMTVKYIREPEHPAS 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.366
Gapped
Lambda K H
0.267 0.0388 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,804,410
Number of extensions: 444162
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 14
Length of query: 550
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 452
Effective length of database: 3,965,535
Effective search space: 1792421820
Effective search space used: 1792421820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.8 bits)