RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11046
         (550 letters)



>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
           {Aeromonas hydrophila [TaxId: 644]}
          Length = 384

 Score = 29.0 bits (65), Expect = 1.5
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 174 SSSTSTEKTTSDSSSTSKYTNLGDLFSEVGEIVPALPPKQTARMTPTLTSSTISLP 229
           S   +  ++ +  +  S  T      S    + P +P +    +   L  + IS P
Sbjct: 172 SIEIAANQSWASQNGGSTTT------SLSQSVRPTVPARSKIPVKIELYKADISYP 221


>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 121

 Score = 26.8 bits (59), Expect = 3.5
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 248 TLTRSESEFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKM 307
                E+EF       T        + + + D   L +   E   S +         V  
Sbjct: 31  KFIARENEFIMKAEGETQEVE----IKLTLEDEGLLDIEVQEETKSAYG--------VSY 78

Query: 308 SGDMMLSFP-AGIVSILTSNPSPAQLKFKVSNISHIENML 346
             DM+     A  V+I   N  P Q+++ + +   +  +L
Sbjct: 79  LSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLL 118


>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
           formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 146

 Score = 26.2 bits (58), Expect = 7.1
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 45  PKEEMWDAEKFYSSSDSDSDDDRDHKIHVEIKPL 78
           P + + DA  FY   ++      +H+I + +  L
Sbjct: 94  PLKALLDAAAFYCEKENLFLLQDEHRIRLVVNRL 127


>d1qwoa_ c.60.1.2 (A:) Phytase
           (myo-inositol-hexakisphosphate-3-phosphohydrolase)
           {Aspergillus fumigatus [TaxId: 5085]}
          Length = 435

 Score = 26.8 bits (58), Expect = 7.7
 Identities = 37/273 (13%), Positives = 72/273 (26%), Gaps = 30/273 (10%)

Query: 242 ISPLNSTLTRSESEFKT--SGVSTTNSSRGPSPLT-IGMSDTIPLAVAFHEIIHS----- 293
              L + +  + ++FK   + + T N + G   LT  G    +   + F++   +     
Sbjct: 65  YKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPFGEQQLVNSGIKFYQRYKALARSV 124

Query: 294 --YFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQL 351
             + R +   R        +     A +     +N +   +   +       N L +   
Sbjct: 125 VPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVC 184

Query: 352 INIEEN-KLDKSSDSMTCEFN---MSALSSLLRKQCEQNPSASYF----NVDILKYQIKS 403
              E +   D+ + + T  F     +     L      +          + D +     +
Sbjct: 185 TKFEASQLGDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSLMDMCSFDTVARTSDA 244

Query: 404 KPGAESCPFQLVAHWKCEPTHTDLKVDYKYNNHAMGSP---SPLLNVVLA-----VPVDG 455
              +  C       WK       L   Y Y       P       N ++A        D 
Sbjct: 245 SQLSPFCQLFTHNEWKKYNYLQSLGKYYGYGAGNPLGPAQGIGFTNELIARLTRSPVQDH 304

Query: 456 EVTNVQAKPNVQWLPETNRAIWKFTDLSQHSEN 488
             TN     N    P              H  +
Sbjct: 305 TSTNSTLVSNPATFPLNA----TMYVDFSHDNS 333


>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 25.1 bits (55), Expect = 8.8
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 28 KSEAPTPEVDEEGYRIRPKEEMWDAE 53
          KS+A   E+ E+  +IR        E
Sbjct: 70 KSKAELMEISEDKTKIRRSPSKPLPE 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,906,847
Number of extensions: 85826
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 8
Length of query: 550
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 460
Effective length of database: 1,171,896
Effective search space: 539072160
Effective search space used: 539072160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.2 bits)