BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11047
(943 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/575 (39%), Positives = 303/575 (52%), Gaps = 127/575 (22%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+A+Y+E I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FL+ K GGGV+Q +ASE+TL+ LLA RT+ I + Q + PEL A I +LVAY S
Sbjct: 130 KAFLNEKAGE-GGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +F N +L P + +A G F
Sbjct: 245 ---TTTCC-------------------SFDN-LLEVGPICNKEDIWLHVDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LNGVEFADSFNFNPHKWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P YL+ H++SGL DY HWQIPL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FE+LV DPRFEI LG+V RL G N + E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTTND-DITRDWNEIRN 690
VP LR + + R +RT + R W I+
Sbjct: 435 LVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKE 469
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/575 (39%), Positives = 303/575 (52%), Gaps = 127/575 (22%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+A+Y+E I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
+ FL+ K GGGV+Q +ASE+TL+ LLA RT+ I + Q + PEL A I +LVAY S
Sbjct: 130 KAFLNEKAGE-GGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +F N +L P + +A G F
Sbjct: 245 ---TTTCC-------------------SFDN-LLEVGPICNKEDIWLHVDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LNGVEFADSFNFNPHXWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P YL+ H++SGL DY HWQIPL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FE+LV DPRFEI LG+V RL G N + E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTTND-DITRDWNEIRN 690
VP LR + + R +RT + R W I+
Sbjct: 435 LVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKE 469
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/575 (39%), Positives = 301/575 (52%), Gaps = 127/575 (22%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGGV+Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY S
Sbjct: 130 EAFLAGEAGE-GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD K ++R L EA+ERDK LIPFF+ + L
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG---- 244
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ CC +F N +L P + +A G F
Sbjct: 245 ---TTSCC-------------------SFDN-LLEVGPICHEEDIWLHVDAAYAGSA-FI 280
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVP---- 483
P RHL + G+ A +F P
Sbjct: 281 CPEFRHL-----------------------------------LNGVEFADSFNFNPHKWL 305
Query: 484 -----SSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P+YL+ H+ SGL DY HWQ+PL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIH 434
Query: 657 CVPASLRIQGLGRAQNFTRTTNDDITR-DWNEIRN 690
VP LR Q + R +R R W IR
Sbjct: 435 LVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/562 (38%), Positives = 299/562 (53%), Gaps = 108/562 (19%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
K MVD+IA+YLENIR+RRV P+VKPGYL+ L+P++AP +PEKW +M DIE+VIMPG+T
Sbjct: 10 AKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SP HAYFP NSYP+++ DMLS AI C+GFTW +SPACTELE++ M+WLGKM+ LP
Sbjct: 70 HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
EFL GGGV+Q TASESTL+ LL + + +++ ++ HPE + I +LV YCS
Sbjct: 130 AEFLACSGGK-GGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGL+G V +R ++S++ +RG L +AIE+D + LIPF+
Sbjct: 189 DQAHSSVERAGLLGGVKLRSVQSENH-RMRGAALEKAIEQDVAEGLIPFY---------- 237
Query: 368 LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE 427
+ LGT F +++ P L +A G F
Sbjct: 238 ----AVVTLGT---TNSCAF----------DYLDECGPVGNKHNLWIHVDAAYAGSA-FI 279
Query: 428 IPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLL 487
P RH L+K + S + P + + + PS ++
Sbjct: 280 CPEYRH-----------------LMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVV 322
Query: 488 RVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547
N V+PLYL+H+ G A DY HWQIPL +RFRALKLWFV+R +G++ LQ
Sbjct: 323 NAFN---------VDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQA 373
Query: 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607
HIR NF A
Sbjct: 374 HIRR-----------------------------------HCNF----------------A 382
Query: 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 667
++F L + D RFE+ A ++G+V RL G N E LLKR+N +G +H VPA ++
Sbjct: 383 KQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYF 442
Query: 668 GRAQNFTR-TTNDDITRDWNEI 688
R +R T ++D+ W E+
Sbjct: 443 LRMAICSRFTQSEDMEYSWKEV 464
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 195/261 (74%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP +P+ WD+I GDIE++IMPG+
Sbjct: 15 GREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV 74
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 75 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 134
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S P+ + + +N+RLVAY S
Sbjct: 135 EHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYAS 194
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE DK++ L+P F+ + L
Sbjct: 195 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGV 254
Query: 368 LVVDSYCCLGTAMIVKGLGFY 388
D LG +GL +
Sbjct: 255 CAFDXLSELGPICAREGLWLH 275
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 125/231 (54%), Gaps = 61/231 (26%)
Query: 470 IQGLGRAQNFTIVPSSLLRV---------KNSGALHRTFNVEPLYLRHENSGLAIDYMHW 520
++G+ A +FT PS + V K+ L +TF+V P+YLRH NSG+A D+MHW
Sbjct: 294 LKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHW 353
Query: 521 QIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLG 580
QIPLS+RFR++KLWFVIR+FG+K LQ H+R GT M
Sbjct: 354 QIPLSRRFRSVKLWFVIRSFGVKNLQAHVRH-------------------GTEM------ 388
Query: 581 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENI 640
A+ FE+LV DP FEIPA RHLG+VV RL G N
Sbjct: 389 --------------------------AKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS 422
Query: 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR-TTNDDITRDWNEIRN 690
LTE +LK + GRL +PA+++ + + R ++ TT DDI RDWN IR+
Sbjct: 423 LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRD 473
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+A+ FE+LV DP FEIPA RHLG+VV RL G N LTE +LK + GRL +PA+
Sbjct: 384 HGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPAT 443
Query: 468 LR 469
++
Sbjct: 444 IQ 445
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 197 YFPALNSYPSLLG---DMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHT 253
YF L++ ++G D L+ N FT+ +P LE +T+ + ++IG P
Sbjct: 91 YFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWP------ 144
Query: 254 KVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS--RLVAYCSDQAH 311
G G+ + S + ++ R + PE++ + + RL+A+ S+ +H
Sbjct: 145 --GGSGDGIFSPGGAISNMYAMMIARFKMF-------PEVKEKGMAALPRLIAFTSEHSH 195
Query: 312 SSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
S++K IG ++ I+ D++ + L I K+K +PF +
Sbjct: 196 FSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLV 245
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 168 PEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSP 227
PE + I+ D + G+ + + L+ L G+ L+ N FT+ +P
Sbjct: 70 PESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDII-GLAGEWLTSTANTNMFTYEIAP 128
Query: 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287
+E IT+ + +++G + G G+ + S + ++A R KY
Sbjct: 129 VFVLMEQITLKKMREIVGWSSK--------DGDGIFSPGGAISNMYSIMAAR----YKY- 175
Query: 288 QSHPELEHAEINS--RLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLI 342
PE++ + + +LV + S+Q+H S++KAG G N+ I+ +++ +
Sbjct: 176 --FPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFE 233
Query: 343 EAIERDKKKHLIPFFI 358
I K+K +PF++
Sbjct: 234 AKILEAKQKGYVPFYV 249
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 21/196 (10%)
Query: 168 PEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSP 227
PE + I+ D + G+ + + L+ L G+ L+ N FT+ +P
Sbjct: 73 PESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDII-GLAGEWLTSTANTNMFTYEIAP 131
Query: 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287
+E IT+ + +++G + G G+ + S + ++A R KY
Sbjct: 132 VFVLMEQITLKKMREIVGWSSK--------DGDGIFSPGGAISNMYSIMAAR----YKY- 178
Query: 288 QSHPELEHAEINS--RLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLI 342
PE++ + + +LV + S+Q+H S++KAG G N+ I+ +++ +
Sbjct: 179 --FPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFE 236
Query: 343 EAIERDKKKHLIPFFI 358
I K+K +PF++
Sbjct: 237 AKILEAKQKGYVPFYV 252
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 173 TIMGDIEKVIMPGITHWQSP--YMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACT 230
+++ D+ +++ Q P H + P L P++ + A+N +W + + T
Sbjct: 82 SVIDDVAELVAKNAIFTQHPDCIAHLHTPPL--XPAVAAEAXIAALNQSXDSWDQASSAT 139
Query: 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ-QS 289
+E +NWL L E+ G+ + ++S L R K S
Sbjct: 140 YVEQKVVNWLCDKYDLSEK---------ADGIFTSGGTQSNQXGLXLARDWIADKLSGHS 190
Query: 290 HPELEHAEINSRLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIE 346
+L + +L CS ++H +V+K+ +G + ++++ + KL E I
Sbjct: 191 IQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIA 250
Query: 347 RDKKKHLIPFFI 358
+ K + LIPF I
Sbjct: 251 QAKAEGLIPFAI 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,949,414
Number of Sequences: 62578
Number of extensions: 1114257
Number of successful extensions: 2141
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2109
Number of HSP's gapped (non-prelim): 27
length of query: 943
length of database: 14,973,337
effective HSP length: 108
effective length of query: 835
effective length of database: 8,214,913
effective search space: 6859452355
effective search space used: 6859452355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)