Query psy11047
Match_columns 943
No_of_seqs 304 out of 2519
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 16:45:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0628|consensus 100.0 7.2E-97 2E-101 816.2 40.0 465 119-698 1-475 (511)
2 PLN02590 probable tyrosine dec 100.0 1.7E-86 3.7E-91 771.7 48.1 454 118-696 53-534 (539)
3 PLN02880 tyrosine decarboxylas 100.0 4.4E-81 9.6E-86 722.2 46.9 456 118-698 9-488 (490)
4 TIGR03799 NOD_PanD_pyr putativ 100.0 1.5E-68 3.2E-73 621.2 42.7 453 111-689 14-520 (522)
5 TIGR03811 tyr_de_CO2_Ent tyros 100.0 3.9E-68 8.4E-73 624.0 45.9 489 107-698 4-606 (608)
6 PF00282 Pyridoxal_deC: Pyrido 100.0 1.2E-69 2.5E-74 608.3 29.4 361 153-636 1-373 (373)
7 KOG0629|consensus 100.0 5.5E-65 1.2E-69 557.9 23.5 460 122-694 31-509 (510)
8 COG0076 GadB Glutamate decarbo 100.0 3.8E-53 8.3E-58 485.4 34.4 423 134-695 3-450 (460)
9 PLN02263 serine decarboxylase 100.0 4.8E-53 1E-57 483.0 33.8 356 171-696 75-445 (470)
10 TIGR01788 Glu-decarb-GAD gluta 100.0 5.6E-52 1.2E-56 473.3 37.3 391 162-695 15-430 (431)
11 PLN03032 serine decarboxylase; 100.0 4.2E-45 9.2E-50 410.0 30.1 352 171-691 8-373 (374)
12 PRK02769 histidine decarboxyla 100.0 3.8E-43 8.3E-48 395.2 32.5 345 172-693 8-371 (380)
13 cd06450 DOPA_deC_like DOPA dec 100.0 1.3E-37 2.9E-42 339.6 34.0 340 194-690 1-344 (345)
14 KOG1383|consensus 100.0 4.2E-32 9.1E-37 302.9 29.9 419 162-751 54-487 (491)
15 PRK13520 L-tyrosine decarboxyl 100.0 1E-27 2.2E-32 264.4 33.6 357 170-692 3-369 (371)
16 TIGR03812 tyr_de_CO2_Arch tyro 100.0 2.6E-26 5.5E-31 253.9 35.1 361 171-690 2-372 (373)
17 COG1104 NifS Cysteine sulfinat 99.9 1E-25 2.2E-30 251.4 28.4 347 194-698 4-381 (386)
18 COG0520 csdA Selenocysteine ly 99.9 1.6E-23 3.5E-28 238.2 30.8 344 204-693 34-404 (405)
19 PRK05367 glycine dehydrogenase 99.9 1.9E-22 4.1E-27 248.8 33.9 378 170-697 479-878 (954)
20 TIGR00461 gcvP glycine dehydro 99.9 4.8E-22 1E-26 242.5 32.8 374 170-697 467-870 (939)
21 PRK04366 glycine dehydrogenase 99.9 2.4E-20 5.2E-25 216.5 35.0 380 163-698 45-452 (481)
22 PLN02651 cysteine desulfurase 99.9 3.1E-20 6.7E-25 206.7 28.5 298 225-682 37-364 (364)
23 cd06453 SufS_like Cysteine des 99.9 8.8E-20 1.9E-24 202.2 31.9 316 220-688 32-373 (373)
24 TIGR03402 FeS_nifS cysteine de 99.9 1.2E-19 2.6E-24 202.4 32.9 308 226-694 37-372 (379)
25 TIGR01979 sufS cysteine desulf 99.9 3E-19 6.4E-24 200.5 33.7 320 223-695 54-402 (403)
26 TIGR03531 selenium_SpcS O-phos 99.9 2E-19 4.2E-24 206.7 32.2 273 162-551 28-329 (444)
27 PRK00451 glycine dehydrogenase 99.9 2.4E-19 5.2E-24 204.9 32.4 373 152-691 31-445 (447)
28 TIGR03392 FeS_syn_CsdA cystein 99.9 4.3E-19 9.3E-24 199.4 33.4 356 193-694 18-395 (398)
29 PRK09295 bifunctional cysteine 99.9 5.1E-19 1.1E-23 199.7 32.2 355 193-693 25-403 (406)
30 PRK10874 cysteine sulfinate de 99.9 8E-19 1.7E-23 197.4 32.9 357 193-694 21-398 (401)
31 TIGR02006 IscS cysteine desulf 99.9 1.6E-19 3.5E-24 203.8 27.4 343 193-695 5-378 (402)
32 COG2008 GLY1 Threonine aldolas 99.8 8.4E-20 1.8E-24 200.9 21.8 308 219-692 27-341 (342)
33 PLN02855 Bifunctional selenocy 99.8 7.1E-18 1.5E-22 191.7 33.8 323 227-695 72-419 (424)
34 TIGR01977 am_tr_V_EF2568 cyste 99.8 8.4E-18 1.8E-22 186.4 32.9 310 230-690 43-375 (376)
35 PF00266 Aminotran_5: Aminotra 99.8 3.7E-18 8.1E-23 190.1 28.6 315 221-684 33-371 (371)
36 TIGR03403 nifS_epsilon cystein 99.8 3.1E-17 6.6E-22 183.5 36.0 307 232-695 43-376 (382)
37 PRK14012 cysteine desulfurase; 99.8 1.3E-17 2.8E-22 188.4 26.5 301 233-695 51-380 (404)
38 cd00613 GDC-P Glycine cleavage 99.8 3.9E-17 8.5E-22 182.7 28.7 308 226-688 59-398 (398)
39 PRK02948 cysteine desulfurase; 99.8 1.4E-16 3.1E-21 177.9 31.6 315 221-695 33-375 (381)
40 cd06451 AGAT_like Alanine-glyo 99.8 1.4E-16 3E-21 175.7 28.1 309 225-692 26-355 (356)
41 TIGR01976 am_tr_V_VC1184 cyste 99.8 5.6E-16 1.2E-20 173.6 32.5 312 227-688 56-397 (397)
42 KOG1368|consensus 99.8 9.5E-18 2.1E-22 179.8 17.2 313 210-689 37-363 (384)
43 KOG1549|consensus 99.8 1.1E-16 2.4E-21 180.3 24.6 203 188-491 40-249 (428)
44 PRK09331 Sep-tRNA:Cys-tRNA syn 99.7 2.6E-15 5.6E-20 169.3 33.0 301 233-694 65-381 (387)
45 PLN02724 Molybdenum cofactor s 99.7 2.9E-16 6.2E-21 192.8 25.5 361 193-692 36-486 (805)
46 PLN02414 glycine dehydrogenase 99.7 8.1E-16 1.8E-20 190.3 28.3 319 229-697 566-910 (993)
47 TIGR01814 kynureninase kynuren 99.7 4.2E-15 9E-20 168.4 29.8 301 242-692 80-405 (406)
48 TIGR03235 DNA_S_dndA cysteine 99.7 6.3E-15 1.4E-19 163.1 25.8 141 226-423 37-180 (353)
49 cd06452 SepCysS Sep-tRNA:Cys-t 99.7 1E-13 2.2E-18 154.3 31.9 292 235-692 48-360 (361)
50 PLN02721 threonine aldolase 99.7 1.3E-14 2.8E-19 159.3 24.1 306 223-693 36-351 (353)
51 cd06502 TA_like Low-specificit 99.7 5.7E-15 1.2E-19 161.1 20.9 292 235-690 36-337 (338)
52 PRK12566 glycine dehydrogenase 99.6 1.4E-13 3E-18 168.4 31.8 316 231-698 543-880 (954)
53 TIGR03301 PhnW-AepZ 2-aminoeth 99.6 1.9E-13 4E-18 149.8 28.4 305 230-691 30-354 (355)
54 TIGR02326 transamin_PhnW 2-ami 99.6 2.8E-13 6.1E-18 150.5 27.5 314 227-691 31-359 (363)
55 PLN02409 serine--glyoxylate am 99.6 4.4E-13 9.5E-18 152.2 29.4 315 226-694 37-372 (401)
56 PTZ00094 serine hydroxymethylt 99.6 1.2E-13 2.7E-18 159.3 25.0 308 225-694 74-408 (452)
57 cd00609 AAT_like Aspartate ami 99.6 4E-13 8.7E-18 145.3 27.3 329 207-689 16-349 (350)
58 cd00616 AHBA_syn 3-amino-5-hyd 99.6 2.5E-13 5.3E-18 149.1 24.9 305 223-689 14-352 (352)
59 cd00611 PSAT_like Phosphoserin 99.6 4.8E-14 1E-18 157.6 19.2 330 199-691 5-353 (355)
60 TIGR02539 SepCysS Sep-tRNA:Cys 99.6 1.4E-12 3E-17 146.4 30.6 298 235-693 55-367 (370)
61 PRK07179 hypothetical protein; 99.6 6.2E-13 1.3E-17 150.7 27.3 295 227-694 99-398 (407)
62 PRK03080 phosphoserine aminotr 99.5 4.6E-13 1E-17 151.1 23.2 313 225-696 42-375 (378)
63 PRK13479 2-aminoethylphosphona 99.5 4.6E-12 9.9E-17 141.0 29.4 316 227-694 33-363 (368)
64 TIGR01822 2am3keto_CoA 2-amino 99.5 2.7E-11 5.8E-16 135.9 31.4 297 234-694 86-389 (393)
65 cd06454 KBL_like KBL_like; thi 99.5 1.4E-11 3.1E-16 134.9 27.7 298 232-691 47-348 (349)
66 PRK05355 3-phosphoserine/phosp 99.4 4.6E-12 9.9E-17 142.6 19.2 332 199-693 9-357 (360)
67 TIGR01437 selA_rel uncharacter 99.4 5.8E-11 1.3E-15 133.6 27.7 300 229-691 43-362 (363)
68 PRK05937 8-amino-7-oxononanoat 99.4 7.4E-11 1.6E-15 132.5 27.3 174 186-423 6-185 (370)
69 TIGR01364 serC_1 phosphoserine 99.4 3.3E-11 7.1E-16 135.3 22.1 306 226-693 32-347 (349)
70 PRK13034 serine hydroxymethylt 99.4 1.4E-10 3.1E-15 132.9 27.1 326 204-694 41-392 (416)
71 TIGR01366 serC_3 phosphoserine 99.4 3E-11 6.6E-16 135.9 19.7 309 224-694 34-360 (361)
72 PRK00011 glyA serine hydroxyme 99.3 2.6E-10 5.7E-15 129.5 27.0 134 226-423 66-205 (416)
73 TIGR01821 5aminolev_synth 5-am 99.3 7.1E-10 1.5E-14 125.5 29.5 294 234-694 93-396 (402)
74 PRK05958 8-amino-7-oxononanoat 99.3 9.7E-10 2.1E-14 122.1 29.5 296 231-691 84-384 (385)
75 cd00378 SHMT Serine-glycine hy 99.3 2.1E-10 4.5E-15 129.3 23.9 134 224-422 58-200 (402)
76 PRK13392 5-aminolevulinate syn 99.3 1.4E-09 3E-14 123.6 28.8 126 235-423 95-220 (410)
77 PRK10534 L-threonine aldolase; 99.3 4.1E-10 8.8E-15 123.8 23.5 315 204-692 13-331 (333)
78 PLN03226 serine hydroxymethylt 99.3 9.2E-10 2E-14 128.6 27.6 318 227-695 76-420 (475)
79 PRK06939 2-amino-3-ketobutyrat 99.3 3.1E-09 6.7E-14 118.8 30.2 130 229-421 85-214 (397)
80 PRK09064 5-aminolevulinate syn 99.3 1.8E-09 4E-14 122.3 28.7 297 235-694 95-397 (407)
81 PLN02822 serine palmitoyltrans 99.3 1.5E-08 3.3E-13 118.6 36.3 427 85-697 28-480 (481)
82 PF01212 Beta_elim_lyase: Beta 99.3 2E-11 4.3E-16 134.2 11.2 193 204-495 8-205 (290)
83 PRK08361 aspartate aminotransf 99.3 1.9E-09 4.2E-14 121.6 27.2 158 206-423 49-211 (391)
84 PRK13393 5-aminolevulinate syn 99.2 3.2E-09 6.9E-14 120.7 28.7 127 233-423 92-219 (406)
85 PRK06108 aspartate aminotransf 99.2 8E-09 1.7E-13 115.4 29.6 157 207-423 41-203 (382)
86 PRK05764 aspartate aminotransf 99.2 1.2E-08 2.6E-13 114.7 30.7 157 207-423 48-209 (393)
87 TIGR01141 hisC histidinol-phos 99.2 6.6E-09 1.4E-13 114.7 27.5 127 235-423 58-186 (346)
88 TIGR01825 gly_Cac_T_rel pyrido 99.2 2E-08 4.3E-13 112.4 30.6 130 229-423 76-205 (385)
89 PRK13580 serine hydroxymethylt 99.2 2.7E-09 5.8E-14 124.5 24.2 319 225-694 89-445 (493)
90 PLN03227 serine palmitoyltrans 99.2 3E-08 6.6E-13 113.0 32.0 306 227-698 43-386 (392)
91 TIGR00858 bioF 8-amino-7-oxono 99.2 1.3E-08 2.8E-13 111.8 27.8 125 234-423 64-188 (360)
92 PRK06225 aspartate aminotransf 99.2 1.5E-08 3.3E-13 113.8 28.9 126 235-423 70-202 (380)
93 cd00615 Orn_deC_like Ornithine 99.2 6.5E-10 1.4E-14 121.3 17.4 127 235-423 63-195 (294)
94 PLN02483 serine palmitoyltrans 99.2 1.8E-08 3.8E-13 118.3 29.7 342 186-695 102-467 (489)
95 cd00610 OAT_like Acetyl ornith 99.2 2.8E-08 6E-13 112.1 29.8 139 229-423 77-237 (413)
96 PRK05367 glycine dehydrogenase 99.1 3.7E-08 8.1E-13 123.3 32.7 356 153-689 43-437 (954)
97 cd01494 AAT_I Aspartate aminot 99.1 3.2E-10 6.8E-15 110.0 11.5 128 235-423 4-134 (170)
98 PRK11658 UDP-4-amino-4-deoxy-L 99.1 2.9E-08 6.3E-13 112.4 29.1 130 224-423 30-160 (379)
99 cd00614 CGS_like CGS_like: Cys 99.1 3E-09 6.6E-14 119.8 20.9 126 225-423 38-167 (369)
100 PRK08134 O-acetylhomoserine am 99.1 1.5E-08 3.3E-13 117.2 26.4 127 224-423 61-191 (433)
101 TIGR03588 PseC UDP-4-keto-6-de 99.1 2.6E-08 5.6E-13 112.2 27.6 134 224-423 26-160 (380)
102 TIGR02618 tyr_phenol_ly tyrosi 99.1 1.3E-08 2.7E-13 117.6 23.7 338 194-694 40-426 (450)
103 PLN02414 glycine dehydrogenase 99.1 5.5E-08 1.2E-12 121.7 30.8 442 161-789 75-613 (993)
104 PRK00950 histidinol-phosphate 99.1 6.1E-08 1.3E-12 107.7 26.8 128 234-423 72-200 (361)
105 PRK15029 arginine decarboxylas 99.1 6E-08 1.3E-12 118.5 28.8 133 236-426 210-356 (755)
106 PRK05957 aspartate aminotransf 99.0 1.4E-07 3.1E-12 106.7 29.6 157 208-423 45-205 (389)
107 PRK05613 O-acetylhomoserine am 99.0 2.6E-08 5.7E-13 115.4 23.7 127 225-423 67-197 (437)
108 COG1003 GcvP Glycine cleavage 99.0 6.8E-08 1.5E-12 109.4 25.7 319 229-699 107-452 (496)
109 PRK13238 tnaA tryptophanase/L- 99.0 7E-08 1.5E-12 112.6 25.8 135 220-420 71-220 (460)
110 PRK05968 hypothetical protein; 99.0 3.7E-08 8E-13 112.3 22.8 125 225-423 61-189 (389)
111 cd00617 Tnase_like Tryptophana 99.0 1.1E-07 2.3E-12 110.2 26.3 135 221-421 47-196 (431)
112 PRK06767 methionine gamma-lyas 99.0 2.1E-08 4.6E-13 114.0 20.1 126 225-423 59-188 (386)
113 PRK09082 methionine aminotrans 99.0 3.1E-07 6.8E-12 103.8 28.5 156 209-423 49-208 (386)
114 PRK03244 argD acetylornithine 99.0 5.6E-07 1.2E-11 101.9 30.3 126 234-423 88-229 (398)
115 PRK08133 O-succinylhomoserine 99.0 8.4E-08 1.8E-12 109.4 23.5 126 225-423 59-188 (390)
116 PRK08861 cystathionine gamma-s 98.9 1.4E-07 3.1E-12 107.7 24.8 127 224-423 50-180 (388)
117 PRK07812 O-acetylhomoserine am 98.9 1.6E-07 3.4E-12 109.0 25.4 127 225-423 67-197 (436)
118 COG0075 Serine-pyruvate aminot 98.9 2.9E-07 6.3E-12 104.7 26.6 312 224-696 31-365 (383)
119 PRK07504 O-succinylhomoserine 98.9 9.7E-08 2.1E-12 109.2 23.1 126 225-423 63-192 (398)
120 PRK06207 aspartate aminotransf 98.9 8.5E-07 1.8E-11 101.3 30.6 142 223-423 74-223 (405)
121 PRK15400 lysine decarboxylase 98.9 2E-07 4.4E-12 113.1 26.7 129 237-426 201-339 (714)
122 PRK15399 lysine decarboxylase 98.9 2.2E-07 4.8E-12 112.7 26.6 127 238-426 202-339 (713)
123 PRK05387 histidinol-phosphate 98.9 5.3E-07 1.1E-11 100.0 27.5 123 235-423 64-187 (353)
124 TIGR01328 met_gam_lyase methio 98.9 1.2E-07 2.6E-12 108.2 23.1 127 224-423 56-186 (391)
125 PRK01688 histidinol-phosphate 98.9 2.7E-07 5.8E-12 103.3 25.0 128 234-423 60-189 (351)
126 PRK07682 hypothetical protein; 98.9 1.5E-06 3.2E-11 97.8 30.9 143 222-423 52-199 (378)
127 PRK08363 alanine aminotransfer 98.9 1.8E-06 3.9E-11 97.9 31.6 155 208-423 51-211 (398)
128 KOG0630|consensus 98.9 8.1E-09 1.8E-13 117.1 12.1 180 300-553 230-420 (838)
129 PRK13237 tyrosine phenol-lyase 98.9 2.3E-07 5E-12 107.6 24.3 137 221-423 72-223 (460)
130 PRK07050 cystathionine beta-ly 98.9 1.9E-07 4.1E-12 106.8 23.4 127 224-423 62-192 (394)
131 COG0399 WecE Predicted pyridox 98.9 1.3E-06 2.8E-11 99.4 29.5 307 225-693 32-372 (374)
132 PRK07324 transaminase; Validat 98.9 1.3E-06 2.8E-11 98.7 29.3 112 260-423 82-198 (373)
133 COG0156 BioF 7-keto-8-aminopel 98.9 4.4E-07 9.5E-12 103.7 25.6 330 185-691 40-387 (388)
134 PF01276 OKR_DC_1: Orn/Lys/Arg 98.9 1.8E-08 3.8E-13 115.8 14.3 133 235-426 70-212 (417)
135 PRK02731 histidinol-phosphate 98.9 3.7E-07 8E-12 101.9 24.4 126 235-423 71-198 (367)
136 PRK08574 cystathionine gamma-s 98.9 2.3E-07 4.9E-12 105.9 23.1 127 224-423 50-179 (385)
137 PRK04870 histidinol-phosphate 98.9 2.2E-06 4.8E-11 95.5 30.5 129 235-423 67-195 (356)
138 PLN02452 phosphoserine transam 98.9 3.3E-07 7.1E-12 104.1 24.0 333 193-694 7-363 (365)
139 PRK07777 aminotransferase; Val 98.9 1.6E-06 3.4E-11 97.9 29.3 143 222-423 56-204 (387)
140 PLN00145 tyrosine/nicotianamin 98.9 1.6E-06 3.5E-11 100.1 29.5 142 222-423 89-235 (430)
141 PLN02656 tyrosine transaminase 98.9 3.2E-06 6.8E-11 96.7 31.3 158 206-423 51-214 (409)
142 PRK00854 rocD ornithine--oxo-a 98.9 1.6E-06 3.5E-11 98.3 28.8 136 226-423 82-233 (401)
143 PTZ00433 tyrosine aminotransfe 98.8 3.8E-06 8.2E-11 96.1 31.8 180 190-423 31-222 (412)
144 PF00155 Aminotran_1_2: Aminot 98.8 5.1E-07 1.1E-11 100.0 24.1 314 221-688 38-363 (363)
145 PRK08912 hypothetical protein; 98.8 4E-06 8.8E-11 94.6 31.6 137 228-423 64-204 (387)
146 TIGR00707 argD acetylornithine 98.8 2.4E-06 5.2E-11 95.5 29.6 136 232-423 70-216 (379)
147 PRK13578 ornithine decarboxyla 98.8 9.8E-07 2.1E-11 107.3 28.0 131 237-426 180-326 (720)
148 PRK14807 histidinol-phosphate 98.8 6.3E-06 1.4E-10 92.1 32.1 127 236-423 64-190 (351)
149 PRK08776 cystathionine gamma-s 98.8 1.6E-06 3.5E-11 99.7 27.9 129 222-423 55-187 (405)
150 TIGR01324 cysta_beta_ly_B cyst 98.8 5.5E-07 1.2E-11 102.5 23.7 126 224-423 47-177 (377)
151 PRK08248 O-acetylhomoserine am 98.8 7.7E-07 1.7E-11 103.1 25.0 128 223-423 60-191 (431)
152 PLN00175 aminotransferase fami 98.8 3.6E-06 7.8E-11 96.6 30.3 158 207-423 71-232 (413)
153 PRK08249 cystathionine gamma-s 98.8 8.5E-07 1.8E-11 101.7 24.9 127 224-423 61-191 (398)
154 TIGR01265 tyr_nico_aTase tyros 98.8 5.4E-06 1.2E-10 94.4 31.3 112 260-423 98-214 (403)
155 PLN03026 histidinol-phosphate 98.8 2.6E-06 5.6E-11 96.6 28.3 127 235-423 90-216 (380)
156 PRK08114 cystathionine beta-ly 98.8 7E-07 1.5E-11 102.5 23.6 128 223-423 58-191 (395)
157 PRK07309 aromatic amino acid a 98.8 5.5E-06 1.2E-10 94.0 30.6 140 228-423 68-211 (391)
158 PRK08064 cystathionine beta-ly 98.8 6.6E-07 1.4E-11 102.2 23.2 127 223-423 50-180 (390)
159 PRK07550 hypothetical protein; 98.8 3.2E-06 6.9E-11 95.4 28.4 141 223-423 63-208 (386)
160 PRK09028 cystathionine beta-ly 98.8 8.7E-07 1.9E-11 101.7 23.6 126 225-423 59-188 (394)
161 PRK08045 cystathionine gamma-s 98.8 1.2E-06 2.6E-11 100.1 24.5 127 224-423 49-179 (386)
162 PRK05994 O-acetylhomoserine am 98.8 1E-06 2.2E-11 101.9 24.1 126 225-423 61-190 (427)
163 TIGR01329 cysta_beta_ly_E cyst 98.8 6.7E-07 1.5E-11 101.7 22.3 125 225-423 45-173 (378)
164 PTZ00125 ornithine aminotransf 98.8 9.5E-06 2.1E-10 91.8 31.2 132 235-423 77-224 (400)
165 PLN02955 8-amino-7-oxononanoat 98.8 8.4E-06 1.8E-10 95.5 31.4 331 204-694 118-461 (476)
166 TIGR02379 ECA_wecE TDP-4-keto- 98.8 6.7E-06 1.5E-10 93.6 30.0 129 225-423 29-158 (376)
167 PRK05939 hypothetical protein; 98.8 1.5E-06 3.3E-11 99.6 24.9 127 224-423 44-173 (397)
168 PRK03158 histidinol-phosphate 98.8 1.6E-06 3.5E-11 96.6 24.6 126 235-423 68-195 (359)
169 PRK07505 hypothetical protein; 98.8 5.8E-06 1.3E-10 94.2 29.5 129 229-421 89-219 (402)
170 PRK12414 putative aminotransfe 98.8 5.6E-06 1.2E-10 93.7 28.9 142 223-423 62-207 (384)
171 TIGR01325 O_suc_HS_sulf O-succ 98.8 7.8E-07 1.7E-11 101.1 22.0 125 225-423 52-181 (380)
172 PRK07811 cystathionine gamma-s 98.7 1.2E-06 2.7E-11 99.9 23.5 126 225-423 59-188 (388)
173 PF01041 DegT_DnrJ_EryC1: DegT 98.7 4.4E-06 9.6E-11 94.1 27.4 128 226-423 24-152 (363)
174 PRK08247 cystathionine gamma-s 98.7 1.2E-06 2.7E-11 98.9 22.7 125 224-423 49-178 (366)
175 COG0436 Aspartate/tyrosine/aro 98.7 1.3E-05 2.8E-10 92.0 31.1 160 205-423 43-208 (393)
176 PRK13355 bifunctional HTH-doma 98.7 6.8E-06 1.5E-10 97.0 29.7 156 204-423 164-326 (517)
177 PTZ00377 alanine aminotransfer 98.7 1.7E-05 3.8E-10 92.8 32.7 148 223-423 111-263 (481)
178 PRK06107 aspartate aminotransf 98.7 1.2E-05 2.6E-10 91.6 30.5 156 208-423 51-212 (402)
179 PRK06234 methionine gamma-lyas 98.7 2.6E-06 5.7E-11 97.6 25.1 126 225-423 62-193 (400)
180 PRK15407 lipopolysaccharide bi 98.7 6.6E-06 1.4E-10 95.6 28.6 136 226-423 62-198 (438)
181 TIGR03537 DapC succinyldiamino 98.7 6.5E-06 1.4E-10 91.9 27.4 145 222-423 31-181 (350)
182 PLN02509 cystathionine beta-ly 98.7 1.6E-06 3.5E-11 101.5 23.4 123 227-423 133-259 (464)
183 PRK08960 hypothetical protein; 98.7 6.4E-06 1.4E-10 93.1 27.6 158 206-423 48-210 (387)
184 PRK06836 aspartate aminotransf 98.7 1.4E-05 3E-10 90.8 30.3 161 206-423 49-219 (394)
185 TIGR01885 Orn_aminotrans ornit 98.7 1.5E-05 3.3E-10 90.7 30.3 134 234-423 82-232 (401)
186 PRK06084 O-acetylhomoserine am 98.7 3.5E-06 7.7E-11 97.5 25.5 126 225-423 56-185 (425)
187 PRK09265 aminotransferase AlaT 98.7 2.3E-05 5E-10 89.3 31.5 112 260-423 97-213 (404)
188 TIGR02080 O_succ_thio_ly O-suc 98.7 3.1E-06 6.6E-11 96.6 24.4 127 224-423 48-178 (382)
189 PRK07810 O-succinylhomoserine 98.7 2.8E-06 6.1E-11 97.6 24.3 128 223-423 66-197 (403)
190 TIGR01326 OAH_OAS_sulfhy OAH/O 98.7 2.5E-06 5.4E-11 98.3 23.8 128 223-423 53-184 (418)
191 PRK04635 histidinol-phosphate 98.7 6.5E-06 1.4E-10 92.1 26.4 125 236-423 65-190 (354)
192 PRK07503 methionine gamma-lyas 98.7 3.1E-06 6.7E-11 97.2 24.3 126 225-423 63-192 (403)
193 PLN02271 serine hydroxymethylt 98.7 2.4E-06 5.2E-11 101.1 23.8 136 226-423 189-338 (586)
194 PRK07337 aminotransferase; Val 98.7 1.2E-05 2.6E-10 90.9 28.6 156 208-423 48-208 (388)
195 TIGR03576 pyridox_MJ0158 pyrid 98.7 8.1E-06 1.7E-10 92.0 26.8 169 171-423 7-180 (346)
196 PRK07681 aspartate aminotransf 98.7 2.4E-05 5.1E-10 89.0 30.8 158 206-423 48-211 (399)
197 PRK08153 histidinol-phosphate 98.7 7.3E-06 1.6E-10 92.4 26.5 127 235-423 71-199 (369)
198 COG1103 Archaea-specific pyrid 98.7 2.8E-06 6.1E-11 91.7 21.5 298 238-694 68-380 (382)
199 PRK06176 cystathionine gamma-s 98.7 2.6E-06 5.6E-11 97.1 22.8 126 224-423 47-176 (380)
200 PRK02627 acetylornithine amino 98.7 1.6E-05 3.4E-10 89.7 28.9 138 230-423 80-228 (396)
201 PRK06348 aspartate aminotransf 98.7 2.3E-05 4.9E-10 88.7 30.2 159 204-423 44-207 (384)
202 PRK07908 hypothetical protein; 98.7 1.2E-05 2.7E-10 89.4 27.7 119 235-423 62-180 (349)
203 KOG0628|consensus 98.7 1.1E-08 2.4E-13 116.2 3.4 133 333-465 285-435 (511)
204 PRK07568 aspartate aminotransf 98.7 2.5E-05 5.4E-10 88.3 30.4 112 260-423 90-207 (397)
205 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.7 5.9E-06 1.3E-10 93.5 25.2 128 226-423 30-158 (375)
206 TIGR03540 DapC_direct LL-diami 98.7 1.7E-05 3.7E-10 89.4 28.8 136 229-423 69-209 (383)
207 PRK07582 cystathionine gamma-l 98.7 2.6E-06 5.6E-11 96.5 22.2 121 225-422 49-173 (366)
208 PRK01278 argD acetylornithine 98.6 9E-06 1.9E-10 92.0 26.3 121 260-423 90-221 (389)
209 PRK08056 threonine-phosphate d 98.6 2.7E-05 5.9E-10 87.2 29.9 125 234-423 58-187 (356)
210 PRK07671 cystathionine beta-ly 98.6 4.9E-06 1.1E-10 94.7 24.2 126 224-423 47-176 (377)
211 TIGR01140 L_thr_O3P_dcar L-thr 98.6 8.7E-06 1.9E-10 90.3 25.1 118 234-423 50-170 (330)
212 PRK05942 aspartate aminotransf 98.6 4.8E-05 1E-09 86.4 31.5 137 228-423 74-215 (394)
213 PRK02936 argD acetylornithine 98.6 2.6E-05 5.7E-10 87.7 29.1 128 230-423 70-213 (377)
214 PLN02187 rooty/superroot1 98.6 2.6E-05 5.6E-10 91.1 29.8 138 226-423 107-249 (462)
215 PLN02242 methionine gamma-lyas 98.6 6.7E-06 1.5E-10 95.0 24.5 126 225-422 74-204 (418)
216 PRK06290 aspartate aminotransf 98.6 3.2E-05 6.9E-10 88.9 29.8 138 227-423 81-224 (410)
217 PRK07269 cystathionine gamma-s 98.6 1.7E-06 3.8E-11 98.1 19.2 127 223-423 50-178 (364)
218 PRK04073 rocD ornithine--oxo-a 98.6 1.3E-05 2.9E-10 91.2 26.4 131 235-423 86-232 (396)
219 PRK07683 aminotransferase A; V 98.6 3.1E-05 6.8E-10 87.8 29.3 159 206-423 44-206 (387)
220 PRK04260 acetylornithine amino 98.6 1.5E-05 3.3E-10 89.8 26.6 115 260-423 86-211 (375)
221 PLN02624 ornithine-delta-amino 98.6 6.4E-05 1.4E-09 88.3 32.7 55 641-699 395-449 (474)
222 TIGR03246 arg_catab_astC succi 98.6 3.3E-05 7.2E-10 88.2 29.5 129 235-423 81-225 (397)
223 TIGR02617 tnaA_trp_ase tryptop 98.6 1.7E-06 3.7E-11 99.9 18.9 145 219-420 66-226 (467)
224 TIGR00461 gcvP glycine dehydro 98.6 1.9E-05 4.1E-10 98.6 28.6 79 604-689 348-426 (939)
225 PRK04311 selenocysteine syntha 98.6 8.5E-05 1.9E-09 87.2 32.6 121 235-422 131-261 (464)
226 PRK09105 putative aminotransfe 98.6 4.6E-05 1E-09 86.2 29.2 126 235-423 82-209 (370)
227 TIGR01264 tyr_amTase_E tyrosin 98.6 4.9E-05 1.1E-09 86.4 29.3 156 207-423 52-213 (401)
228 PRK08068 transaminase; Reviewe 98.5 8.8E-05 1.9E-09 84.0 30.3 156 208-423 50-212 (389)
229 PLN02231 alanine transaminase 98.5 0.00011 2.4E-09 87.7 32.3 149 222-423 163-316 (534)
230 PRK06702 O-acetylhomoserine am 98.5 1.2E-05 2.5E-10 93.6 23.3 126 225-423 59-189 (432)
231 PLN00143 tyrosine/nicotianamin 98.5 0.00014 3.1E-09 83.3 31.5 158 206-423 52-215 (409)
232 PRK03317 histidinol-phosphate 98.5 0.00012 2.6E-09 82.2 30.2 138 227-423 65-202 (368)
233 PRK04781 histidinol-phosphate 98.5 8.5E-05 1.8E-09 83.8 29.0 129 235-423 63-196 (364)
234 PRK08636 aspartate aminotransf 98.5 0.00012 2.6E-09 83.5 30.5 166 204-423 48-220 (403)
235 PRK06460 hypothetical protein; 98.5 1.5E-05 3.3E-10 90.6 23.2 129 222-423 40-172 (376)
236 PRK09276 LL-diaminopimelate am 98.5 0.00011 2.4E-09 82.9 29.1 136 229-423 71-211 (385)
237 PRK05166 histidinol-phosphate 98.5 7.4E-05 1.6E-09 84.2 27.4 127 235-423 75-203 (371)
238 PRK03321 putative aminotransfe 98.5 4.1E-05 8.9E-10 85.2 25.1 127 235-423 61-189 (352)
239 PRK08175 aminotransferase; Val 98.5 0.00028 6E-09 80.3 32.2 163 204-423 44-209 (395)
240 PLN02376 1-aminocyclopropane-1 98.5 7.9E-05 1.7E-09 88.1 28.4 138 230-423 97-244 (496)
241 PRK15481 transcriptional regul 98.4 0.00012 2.5E-09 84.4 28.5 111 260-423 143-258 (431)
242 PF02347 GDC-P: Glycine cleava 98.4 0.00013 2.7E-09 84.7 28.1 358 153-688 32-429 (429)
243 PRK03715 argD acetylornithine 98.4 0.00018 3.8E-09 82.7 29.4 138 230-423 77-225 (395)
244 PRK06358 threonine-phosphate d 98.4 0.00012 2.5E-09 82.3 27.0 124 235-423 58-186 (354)
245 PRK05964 adenosylmethionine--8 98.4 0.00012 2.6E-09 84.4 27.5 84 606-694 335-422 (423)
246 COG3844 Kynureninase [Amino ac 98.4 3.3E-05 7.1E-10 85.6 21.0 300 231-694 76-402 (407)
247 TIGR00474 selA seryl-tRNA(sec) 98.4 3.5E-05 7.6E-10 90.1 22.3 122 234-422 125-256 (454)
248 PRK05967 cystathionine beta-ly 98.4 4.4E-05 9.6E-10 87.8 22.7 126 224-423 61-191 (395)
249 PRK01533 histidinol-phosphate 98.4 0.00025 5.5E-09 80.3 28.4 108 235-378 68-175 (366)
250 TIGR01365 serC_2 phosphoserine 98.4 4.9E-05 1.1E-09 86.9 22.5 324 204-691 15-370 (374)
251 PRK06434 cystathionine gamma-l 98.3 4E-05 8.8E-10 87.8 21.5 126 222-423 59-188 (384)
252 PRK12381 bifunctional succinyl 98.3 0.00047 1E-08 79.1 30.0 52 641-696 350-401 (406)
253 PRK09148 aminotransferase; Val 98.3 0.00057 1.2E-08 78.3 30.2 144 223-423 64-210 (405)
254 TIGR03538 DapC_gpp succinyldia 98.3 0.00043 9.2E-09 78.6 28.5 162 206-423 44-210 (393)
255 PRK12462 phosphoserine aminotr 98.3 7.1E-05 1.5E-09 85.3 22.0 331 195-694 6-362 (364)
256 KOG2862|consensus 98.3 0.00012 2.6E-09 80.8 22.6 164 197-423 21-187 (385)
257 PF00464 SHMT: Serine hydroxym 98.3 3.9E-05 8.4E-10 88.3 20.0 313 224-688 59-399 (399)
258 PRK07366 succinyldiaminopimela 98.3 0.00075 1.6E-08 76.4 30.1 142 222-423 63-210 (388)
259 PRK02610 histidinol-phosphate 98.3 0.0011 2.4E-08 75.0 31.1 140 227-423 66-211 (374)
260 PRK09147 succinyldiaminopimela 98.3 0.00064 1.4E-08 77.3 28.9 159 207-423 46-211 (396)
261 PF01053 Cys_Met_Meta_PP: Cys/ 98.3 0.00023 5.1E-09 81.8 25.3 277 224-691 52-384 (386)
262 PRK08117 4-aminobutyrate amino 98.2 0.0015 3.3E-08 75.7 31.5 53 641-695 378-430 (433)
263 PRK05093 argD bifunctional N-s 98.2 0.0017 3.6E-08 74.4 31.4 128 235-423 86-230 (403)
264 PRK09264 diaminobutyrate--2-ox 98.2 0.0026 5.7E-08 73.7 33.0 65 630-697 355-419 (425)
265 PLN02450 1-aminocyclopropane-1 98.2 0.00039 8.5E-09 81.5 26.5 143 229-423 88-236 (468)
266 PRK06425 histidinol-phosphate 98.2 0.00066 1.4E-08 75.5 26.8 121 235-423 44-167 (332)
267 PRK11522 putrescine--2-oxoglut 98.2 0.0014 3.1E-08 77.0 30.7 68 629-699 389-456 (459)
268 COG2873 MET17 O-acetylhomoseri 98.2 0.00019 4.1E-09 81.0 21.5 155 221-488 56-211 (426)
269 PRK03967 histidinol-phosphate 98.2 0.002 4.3E-08 72.0 29.9 123 235-423 59-181 (337)
270 PLN02760 4-aminobutyrate:pyruv 98.2 0.0016 3.5E-08 77.4 30.4 54 642-700 444-497 (504)
271 COG0112 GlyA Glycine/serine hy 98.1 0.00018 4E-09 81.6 19.9 140 223-423 64-206 (413)
272 KOG2040|consensus 98.1 0.0005 1.1E-08 81.4 23.7 319 230-698 581-922 (1001)
273 PRK08360 4-aminobutyrate amino 98.1 0.0059 1.3E-07 71.4 32.5 50 642-695 378-427 (443)
274 PLN02607 1-aminocyclopropane-1 98.1 0.0014 3E-08 76.7 27.3 143 229-423 97-245 (447)
275 TIGR03372 putres_am_tran putre 98.1 0.004 8.6E-08 73.0 30.8 138 231-423 117-270 (442)
276 PRK06855 aminotransferase; Val 98.1 0.0015 3.2E-08 75.7 27.1 160 205-423 50-216 (433)
277 PRK05769 4-aminobutyrate amino 98.1 0.0066 1.4E-07 70.9 32.1 51 641-695 390-440 (441)
278 TIGR02407 ectoine_ectB diamino 98.1 0.0059 1.3E-07 70.6 31.2 85 605-693 326-411 (412)
279 PRK04612 argD acetylornithine 98.0 0.0071 1.5E-07 70.0 31.0 52 641-696 354-405 (408)
280 PRK08088 4-aminobutyrate amino 98.0 0.01 2.2E-07 68.7 31.2 52 641-694 372-423 (425)
281 PRK14809 histidinol-phosphate 97.9 0.0053 1.1E-07 68.8 27.5 126 235-423 69-198 (357)
282 TIGR00700 GABAtrnsam 4-aminobu 97.9 0.0097 2.1E-07 68.8 30.3 85 605-692 328-418 (420)
283 PRK07049 methionine gamma-lyas 97.9 0.0022 4.7E-08 74.6 24.4 131 225-423 81-222 (427)
284 TIGR00709 dat 2,4-diaminobutyr 97.9 0.016 3.6E-07 67.6 31.5 57 641-699 384-440 (442)
285 PRK07678 aminotransferase; Val 97.9 0.021 4.6E-07 66.9 32.4 54 641-695 394-450 (451)
286 PRK08593 4-aminobutyrate amino 97.9 0.012 2.7E-07 68.8 30.3 53 641-697 380-432 (445)
287 PRK08637 hypothetical protein; 97.9 0.011 2.4E-07 67.2 28.9 116 260-423 71-196 (388)
288 PRK06541 hypothetical protein; 97.9 0.011 2.4E-07 69.5 29.4 52 644-697 407-458 (460)
289 PRK07495 4-aminobutyrate amino 97.9 0.039 8.4E-07 64.3 33.4 54 641-696 370-423 (425)
290 TIGR00713 hemL glutamate-1-sem 97.9 0.0052 1.1E-07 70.7 26.0 128 234-423 91-241 (423)
291 PLN00144 acetylornithine trans 97.9 0.015 3.2E-07 66.7 29.5 50 642-694 331-380 (382)
292 PRK07482 hypothetical protein; 97.8 0.022 4.7E-07 67.1 31.3 55 642-699 405-459 (461)
293 PRK07865 N-succinyldiaminopime 97.8 0.0086 1.9E-07 67.3 26.8 132 222-423 57-193 (364)
294 PRK06917 hypothetical protein; 97.8 0.033 7.2E-07 65.3 32.1 56 641-697 381-440 (447)
295 PLN02672 methionine S-methyltr 97.8 0.013 2.7E-07 75.2 30.4 134 232-423 735-874 (1082)
296 PRK07590 L,L-diaminopimelate a 97.8 0.022 4.8E-07 65.3 29.6 185 170-423 16-221 (409)
297 PRK09440 avtA valine--pyruvate 97.8 0.015 3.2E-07 66.7 27.9 162 205-422 47-223 (416)
298 PRK06058 4-aminobutyrate amino 97.8 0.018 3.9E-07 67.2 29.1 52 641-694 391-442 (443)
299 PRK14808 histidinol-phosphate 97.8 0.012 2.6E-07 65.9 26.4 102 260-423 78-179 (335)
300 PF05889 SLA_LP_auto_ag: Solub 97.8 0.0012 2.5E-08 75.7 18.3 307 235-693 60-389 (389)
301 PRK12403 putative aminotransfe 97.8 0.032 6.9E-07 65.7 30.8 50 644-698 407-456 (460)
302 PRK06062 hypothetical protein; 97.7 0.044 9.6E-07 64.4 31.7 49 642-695 398-446 (451)
303 TIGR03539 DapC_actino succinyl 97.7 0.014 3.1E-07 65.5 26.7 128 226-423 55-187 (357)
304 PRK09792 4-aminobutyrate trans 97.7 0.064 1.4E-06 62.3 32.4 50 641-692 370-419 (421)
305 PRK07392 threonine-phosphate d 97.7 0.031 6.7E-07 62.9 29.0 124 235-423 61-189 (360)
306 COG1168 MalY Bifunctional PLP- 97.7 0.0096 2.1E-07 67.8 24.6 158 210-423 45-208 (388)
307 PRK06105 aminotransferase; Pro 97.7 0.019 4.2E-07 67.5 28.4 54 642-700 402-455 (460)
308 COG1167 ARO8 Transcriptional r 97.7 0.04 8.6E-07 64.9 30.4 158 206-423 107-272 (459)
309 PRK12389 glutamate-1-semialdeh 97.7 0.035 7.6E-07 64.6 29.6 132 230-423 92-246 (428)
310 KOG1359|consensus 97.7 0.0033 7.2E-08 69.3 19.6 290 231-694 112-412 (417)
311 COG0079 HisC Histidinol-phosph 97.7 0.019 4.2E-07 65.6 26.6 125 236-423 62-189 (356)
312 PRK09221 beta alanine--pyruvat 97.7 0.046 1E-06 64.1 30.2 48 642-694 396-443 (445)
313 COG0403 GcvP Glycine cleavage 97.7 0.015 3.2E-07 67.1 25.1 354 167-691 55-447 (450)
314 PRK05965 hypothetical protein; 97.6 0.043 9.3E-07 64.6 29.7 53 641-697 398-450 (459)
315 PRK06918 4-aminobutyrate amino 97.6 0.036 7.9E-07 64.9 28.9 55 641-697 392-446 (451)
316 PRK06777 4-aminobutyrate amino 97.6 0.076 1.6E-06 61.7 30.7 50 641-692 370-419 (421)
317 PRK05639 4-aminobutyrate amino 97.6 0.15 3.2E-06 60.2 33.0 54 641-696 392-445 (457)
318 PRK08354 putative aminotransfe 97.6 0.0079 1.7E-07 66.4 21.4 115 236-423 45-162 (311)
319 TIGR03542 DAPAT_plant LL-diami 97.6 0.02 4.4E-07 65.4 25.4 108 260-423 97-218 (402)
320 PLN02368 alanine transaminase 97.6 0.0014 2.9E-08 75.9 15.9 148 223-423 103-255 (407)
321 PRK07480 putative aminotransfe 97.6 0.046 1E-06 64.4 28.6 53 643-700 402-454 (456)
322 PRK07481 hypothetical protein; 97.6 0.098 2.1E-06 61.5 31.1 50 641-695 397-446 (449)
323 COG1982 LdcC Arginine/lysine/o 97.6 0.03 6.6E-07 67.0 26.7 127 236-423 75-207 (557)
324 COG0001 HemL Glutamate-1-semia 97.6 0.012 2.6E-07 68.4 22.8 133 229-423 91-246 (432)
325 PLN02482 glutamate-1-semialdeh 97.5 0.043 9.3E-07 65.0 27.9 41 230-281 138-178 (474)
326 PRK06149 hypothetical protein; 97.5 0.044 9.5E-07 70.2 29.9 52 641-694 919-970 (972)
327 PRK00062 glutamate-1-semialdeh 97.5 0.043 9.4E-07 63.7 27.4 134 230-423 89-243 (426)
328 PRK13360 omega amino acid--pyr 97.5 0.02 4.3E-07 67.1 24.6 49 642-695 393-441 (442)
329 PRK07036 hypothetical protein; 97.5 0.071 1.5E-06 63.0 29.3 54 642-700 405-458 (466)
330 PRK06943 adenosylmethionine--8 97.5 0.16 3.5E-06 59.8 31.8 53 641-698 398-450 (453)
331 TIGR00508 bioA adenosylmethion 97.5 0.037 8.1E-07 64.5 26.3 60 628-693 366-425 (427)
332 PRK00615 glutamate-1-semialdeh 97.5 0.02 4.3E-07 67.0 23.9 50 641-696 381-430 (433)
333 PRK07483 hypothetical protein; 97.5 0.1 2.2E-06 61.3 29.8 57 641-698 381-441 (443)
334 TIGR03251 LAT_fam L-lysine 6-t 97.5 0.05 1.1E-06 63.4 27.0 58 628-690 373-430 (431)
335 COG0160 GabT 4-aminobutyrate a 97.5 0.093 2E-06 61.7 28.8 288 260-695 119-446 (447)
336 PRK06148 hypothetical protein; 97.5 0.039 8.4E-07 71.0 28.1 53 641-695 959-1011(1013)
337 TIGR00699 GABAtrns_euk 4-amino 97.5 0.2 4.4E-06 59.3 32.0 60 627-691 404-463 (464)
338 KOG1357|consensus 97.4 0.003 6.4E-08 72.9 15.7 169 188-423 140-318 (519)
339 PRK06173 adenosylmethionine--8 97.4 0.036 7.9E-07 64.7 24.8 61 630-696 367-427 (429)
340 COG4992 ArgD Ornithine/acetylo 97.4 0.023 4.9E-07 65.6 22.3 51 642-696 350-400 (404)
341 PRK08297 L-lysine aminotransfe 97.4 0.11 2.5E-06 60.8 28.5 82 606-694 358-441 (443)
342 PRK06082 4-aminobutyrate amino 97.4 0.32 7E-06 57.4 32.3 52 642-697 403-454 (459)
343 PRK07030 adenosylmethionine--8 97.4 0.12 2.7E-06 61.0 28.8 49 643-696 400-448 (466)
344 PRK06959 putative threonine-ph 97.4 0.07 1.5E-06 60.0 25.6 79 607-697 258-336 (339)
345 PRK06916 adenosylmethionine--8 97.3 0.16 3.4E-06 60.0 29.2 47 643-694 409-455 (460)
346 PRK12566 glycine dehydrogenase 97.3 0.049 1.1E-06 68.9 25.7 78 604-689 362-439 (954)
347 PRK06938 diaminobutyrate--2-ox 97.3 0.34 7.3E-06 57.4 31.3 54 641-696 409-462 (464)
348 PRK05839 hypothetical protein; 97.3 0.18 4E-06 57.2 28.2 134 229-423 62-200 (374)
349 PRK07986 adenosylmethionine--8 97.3 0.099 2.2E-06 61.1 26.0 46 642-692 376-421 (428)
350 PRK06931 diaminobutyrate--2-ox 97.2 0.46 1E-05 56.1 31.5 54 642-697 404-457 (459)
351 PRK07046 aminotransferase; Val 97.1 0.23 5E-06 58.6 27.2 40 230-281 114-153 (453)
352 PRK05664 threonine-phosphate d 97.1 0.22 4.8E-06 55.6 25.8 114 235-423 53-169 (330)
353 PRK08742 adenosylmethionine--8 97.1 0.39 8.4E-06 57.0 28.9 49 643-696 421-469 (472)
354 PLN02590 probable tyrosine dec 97.1 0.00033 7.1E-09 83.8 3.4 132 334-466 338-497 (539)
355 PRK05630 adenosylmethionine--8 97.1 0.34 7.4E-06 56.6 28.1 58 630-693 362-419 (422)
356 PRK04013 argD acetylornithine/ 97.1 0.23 4.9E-06 57.0 26.1 50 643-696 313-362 (364)
357 COG0626 MetC Cystathionine bet 97.0 0.14 3.1E-06 59.4 24.2 127 224-423 60-191 (396)
358 KOG0259|consensus 96.9 0.29 6.3E-06 56.2 24.6 111 259-423 127-244 (447)
359 PRK09257 aromatic amino acid a 96.8 0.016 3.6E-07 66.0 14.4 163 206-423 47-217 (396)
360 PRK06209 glutamate-1-semialdeh 96.6 0.39 8.5E-06 56.1 23.8 46 642-698 364-409 (431)
361 KOG0256|consensus 96.6 0.21 4.7E-06 57.7 20.7 120 260-426 148-273 (471)
362 PTZ00376 aspartate aminotransf 96.6 0.039 8.5E-07 63.3 14.9 115 263-423 102-221 (404)
363 COG1932 SerC Phosphoserine ami 96.6 0.25 5.4E-06 56.4 20.6 88 604-694 273-363 (365)
364 KOG0053|consensus 96.5 0.27 5.9E-06 57.1 20.8 124 226-423 76-204 (409)
365 TIGR03801 asp_4_decarbox aspar 96.5 0.053 1.2E-06 65.0 15.5 163 205-423 109-287 (521)
366 KOG2467|consensus 96.4 0.46 9.9E-06 54.4 21.0 313 226-694 81-426 (477)
367 KOG0634|consensus 96.3 0.78 1.7E-05 53.6 22.6 115 259-421 125-247 (472)
368 KOG1360|consensus 96.2 0.41 9E-06 55.2 20.0 88 604-694 433-524 (570)
369 KOG0257|consensus 96.2 0.099 2.1E-06 60.4 15.2 160 204-423 45-217 (420)
370 COG0161 BioA Adenosylmethionin 95.9 0.96 2.1E-05 53.4 21.8 53 641-698 395-447 (449)
371 PRK09275 aspartate aminotransf 95.9 0.12 2.5E-06 62.2 14.8 164 205-423 115-288 (527)
372 COG3977 Alanine-alpha-ketoisov 95.5 2.1 4.5E-05 48.3 21.0 160 206-423 52-224 (417)
373 PLN02880 tyrosine decarboxylas 95.2 0.013 2.8E-07 69.6 3.4 84 382-465 347-448 (490)
374 COG3033 TnaA Tryptophanase [Am 95.1 0.26 5.6E-06 56.2 12.7 85 307-420 129-228 (471)
375 KOG0258|consensus 94.9 0.23 5E-06 57.1 11.9 147 220-423 106-260 (475)
376 KOG3843|consensus 94.6 0.78 1.7E-05 50.6 14.4 292 301-718 104-425 (432)
377 PLN02397 aspartate transaminas 94.3 1.1 2.5E-05 52.0 16.0 91 303-423 144-239 (423)
378 KOG1404|consensus 93.4 2.8 6.1E-05 48.7 16.4 47 640-688 386-432 (442)
379 KOG3846|consensus 93.0 7.1 0.00015 44.3 18.3 119 235-378 115-238 (465)
380 TIGR03799 NOD_PanD_pyr putativ 91.1 0.17 3.7E-06 60.8 3.6 85 382-466 367-483 (522)
381 KOG1401|consensus 90.8 30 0.00064 40.8 20.7 119 260-423 118-252 (433)
382 COG1921 SelA Selenocysteine sy 90.4 3.1 6.8E-05 48.4 12.7 79 309-423 119-199 (395)
383 PLN02974 adenosylmethionine-8- 90.2 67 0.0015 41.3 26.6 45 642-691 770-815 (817)
384 KOG1358|consensus 90.1 12 0.00025 43.8 16.6 88 608-695 366-466 (467)
385 PF00202 Aminotran_3: Aminotra 86.8 11 0.00025 42.6 14.1 142 233-423 61-223 (339)
386 KOG1402|consensus 86.4 50 0.0011 38.2 18.2 62 627-692 363-425 (427)
387 PF00282 Pyridoxal_deC: Pyrido 84.0 0.42 9.2E-06 55.0 0.9 61 382-442 302-373 (373)
388 KOG2790|consensus 81.3 92 0.002 35.5 17.3 86 605-693 278-367 (370)
389 KOG0633|consensus 78.6 48 0.001 37.2 14.0 55 320-378 130-184 (375)
390 KOG1405|consensus 66.7 1.6E+02 0.0035 34.5 15.0 58 631-693 425-482 (484)
391 PF03841 SelA: L-seryl-tRNA se 56.2 4.7 0.0001 46.6 0.8 68 320-423 110-182 (367)
392 KOG2040|consensus 30.9 3.3E+02 0.0071 34.5 10.5 77 606-690 403-479 (1001)
393 PF06838 Met_gamma_lyase: Meth 30.6 1.1E+02 0.0024 35.9 6.4 126 240-423 63-202 (403)
394 PF12897 Aminotran_MocR: Alani 29.3 4.8E+02 0.01 31.2 11.2 113 235-370 73-189 (425)
395 COG1448 TyrB Aspartate/tyrosin 23.5 2.9E+02 0.0062 32.7 8.1 114 259-423 95-217 (396)
396 KOG1403|consensus 21.9 1.3E+03 0.028 26.9 17.7 59 641-700 385-443 (452)
397 PRK11633 cell division protein 20.4 2.7E+02 0.0059 30.5 6.8 49 642-691 163-213 (226)
No 1
>KOG0628|consensus
Probab=100.00 E-value=7.2e-97 Score=816.18 Aligned_cols=465 Identities=53% Similarity=0.867 Sum_probs=452.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc
Q psy11047 119 IPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF 198 (943)
Q Consensus 119 ~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~ 198 (943)
|+.++||+.+++|+|+|+||+++++++||+|+++|+|+++++|.++|++|++|++|++|++++|+||++||+||+||+|+
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf 80 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF 80 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH
Q psy11047 199 PALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG 278 (943)
Q Consensus 199 ~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA 278 (943)
|++.++|+++||||+.+++..|++|.+||++|+||..+++||++|+++|..|++.+ .+.|+|++++++|||+++|+++|
T Consensus 81 pa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~-~g~GgGviQ~tases~lvallaa 159 (511)
T KOG0628|consen 81 PAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLG-LGDGGGVIQGTASESVLVALLAA 159 (511)
T ss_pred cCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccC-CCCCcceEecCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766 78899999999999999999999
Q ss_pred HHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEE
Q psy11047 279 RTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358 (943)
Q Consensus 279 R~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~V 358 (943)
|.+.+.+++..+|.+.+..+..++|+|||+|+|+|++|||++|+++++.+++|.+..|+++.|+++|++|.++|++|++|
T Consensus 160 R~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v 239 (511)
T KOG0628|consen 160 RTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFV 239 (511)
T ss_pred HHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEE
Confidence 99999999888888877778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceee
Q psy11047 359 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 359 VaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~Vc 438 (943)
++|.|||.++++|+|.+++. +|+++|+ |+||||||+|. +|
T Consensus 240 ~at~GTT~~ca~D~l~elg~--------------------Vc~~~gl-------WLHVDAAYAGs-a~------------ 279 (511)
T KOG0628|consen 240 CATLGTTSSCAFDELEELGP--------------------VCREEGL-------WLHVDAAYAGS-AF------------ 279 (511)
T ss_pred EEeecCccccccccHHHhcc--------------------hhhhcCE-------EEEeehhhccc-cc------------
Confidence 99999999999999999999 9999999 99999999999 65
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccC
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHE 509 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~ 509 (943)
+||+++.+++|+++|||+++++|||+. +|++..+.++|+.+|.||.|.
T Consensus 280 -----------------------iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~ 336 (511)
T KOG0628|consen 280 -----------------------ICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHA 336 (511)
T ss_pred -----------------------cCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcch
Confidence 799999999999999999999999999 899988989999999999998
Q ss_pred CCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCC
Q psy11047 510 NSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 589 (943)
Q Consensus 510 ~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~ 589 (943)
..+..+||++|++++|||||+||+|+++|.+|.++++++|++
T Consensus 337 ~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~-------------------------------------- 378 (511)
T KOG0628|consen 337 YQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIRE-------------------------------------- 378 (511)
T ss_pred hhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHH--------------------------------------
Confidence 877789999999999999999999999999999999999999
Q ss_pred CcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEE
Q psy11047 590 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGR 669 (943)
Q Consensus 590 ~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR 669 (943)
+++||++|+.++.+++.||+..++.+++||||+++.|..|++|++++|.+|++|++++.+.|+++||
T Consensus 379 -------------h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlR 445 (511)
T KOG0628|consen 379 -------------HVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLR 445 (511)
T ss_pred -------------HHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E-eecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 670 A-QNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 670 ~-v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
+ ++++.|+++||+..|+.|.+.+..+...
T Consensus 446 f~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 446 FAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred EEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9 9999999999999999999999987776
No 2
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=1.7e-86 Score=771.73 Aligned_cols=454 Identities=37% Similarity=0.621 Sum_probs=417.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCc
Q psy11047 118 KIPLIPVILVGKEMVDYIADYLENIRD----RRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPY 193 (943)
Q Consensus 118 ~~~~e~fr~~~~~~vd~i~dyl~~~~~----~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPr 193 (943)
+|+.++||+.+++++|.+++|++++.+ +||.+.++|++++++++.++|++|++++++++++.+.|+|++++|+||+
T Consensus 53 ~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~ 132 (539)
T PLN02590 53 PMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPS 132 (539)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCC
Confidence 389999999999999999999999887 7999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLI 273 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~ 273 (943)
|+||+++++++++++||+|++++|+++++|..||++++||++|++||++|+|+|+.|+. .+.++|+||+||||||++
T Consensus 133 f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~---~~~~gG~~~sGgSeAnl~ 209 (539)
T PLN02590 133 YFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLS---TGNGGGVIQGTGCEAVLV 209 (539)
T ss_pred eeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCccccc---CCCCceEEcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987652 234689999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCC--ccEEEEecC--CCCCcCHHHHHHHHHHh
Q psy11047 274 CLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGL--VNMRYIESD--DKLSLRGDKLIEAIERD 348 (943)
Q Consensus 274 AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~--~~v~~Vp~D--~~grmD~daLe~aI~~d 348 (943)
||++||+++++.. |.. ..++++||+|+++|||+.||+. +|. .+++.||+| ++++||+++|+++|+++
T Consensus 210 al~aAR~~~~~~~-----g~~---~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d 281 (539)
T PLN02590 210 VVLAARDRILKKV-----GKT---LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD 281 (539)
T ss_pred HHHHHHHHHHhhh-----ccc---CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence 9999999876432 111 1257899999999999999995 554 579999998 46899999999999999
Q ss_pred hccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccc
Q psy11047 349 KKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 428 (943)
Q Consensus 349 ~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeL 428 (943)
.++|..|++||+|+|||++|+||||++|++ +|++||+ |+||||||||+ ++
T Consensus 282 ~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~--------------------i~~~~g~-------WlHVDaA~GG~-al-- 331 (539)
T PLN02590 282 LAKGFIPFFICATVGTTSSAAVDPLVPLGN--------------------IAKKYGI-------WLHVDAAYAGN-AC-- 331 (539)
T ss_pred HhcCCCcEEEEEEeCCCCCcccCCHHHHHH--------------------HHHHhCC-------eEEEecchhhh-hh--
Confidence 999999999999999999999999999999 9999999 99999999998 43
Q ss_pred ccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhc
Q psy11047 429 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTF 499 (943)
Q Consensus 429 p~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af 499 (943)
++++++++++|+++||||++||||||+ +|++..|.++|
T Consensus 332 ---------------------------------~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~ 378 (539)
T PLN02590 332 ---------------------------------ICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDAL 378 (539)
T ss_pred ---------------------------------cChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHh
Confidence 578899999999999999999999998 78888888889
Q ss_pred ccCccccccCC--CCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhc
Q psy11047 500 NVEPLYLRHEN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577 (943)
Q Consensus 500 ~~~p~YL~~~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~ 577 (943)
...++||.... .+..+|+.+|++++||||+|||+|++|+.+|.+||+++|++
T Consensus 379 ~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~-------------------------- 432 (539)
T PLN02590 379 KTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRD-------------------------- 432 (539)
T ss_pred hcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 99999996532 23457899999999999999999999999999999999999
Q ss_pred ccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecC-------CChHHHHHHHHHh
Q psy11047 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG-------ENILTEKLLKRLN 650 (943)
Q Consensus 578 ~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g-------~n~l~~~Ll~~L~ 650 (943)
++++|++|+++|+++|+||++.+|.+++||||+.+ .|.+|.+|+++|+
T Consensus 433 -------------------------~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~ 487 (539)
T PLN02590 433 -------------------------HVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVN 487 (539)
T ss_pred -------------------------HHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999975 2578899999999
Q ss_pred ccCcEEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 651 SKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 651 ~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
++|.+|++++.++|+.+||+ ++||.|+++||+.+|+.|.+.+.++-
T Consensus 488 ~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 488 STGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred hCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999 89999999999999999999876653
No 3
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=4.4e-81 Score=722.20 Aligned_cols=456 Identities=38% Similarity=0.666 Sum_probs=416.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEE
Q psy11047 118 KIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAY 197 (943)
Q Consensus 118 ~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~ 197 (943)
.|+.++||+.+++++|.+.+|+++++++||+|..+|+++++.++..+|++|++++++++++.+.++|++++|+||+|+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~ 88 (490)
T PLN02880 9 PMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAY 88 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH
Q psy11047 198 FPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA 277 (943)
Q Consensus 198 ~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a 277 (943)
+++++++++++||++++++|+++++|+.||++++||++|++||++|+|+|+.|+. .+.++|+||+|||+||++||++
T Consensus 89 ~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~---~~~~gG~~tsggs~anl~al~~ 165 (490)
T PLN02880 89 YPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLS---TGNGGGVIQGTASEAVLVVLLA 165 (490)
T ss_pred ccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhc---CCCCceEEcCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987541 2346899999999999999999
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCC--ccEEEEecCC--CCCcCHHHHHHHHHHhhccC
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGL--VNMRYIESDD--KLSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~--~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG 352 (943)
||++.++..+.. + .++++||+|+++|||+.||+ .+|. .+++.||+|. +++||+++|+++|+++.++|
T Consensus 166 AR~~~~~~~g~~--~------~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g 237 (490)
T PLN02880 166 ARDRVLRKVGKN--A------LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSG 237 (490)
T ss_pred HHHHHHHHhccc--c------cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCC
Confidence 999876533211 1 25689999999999999999 4665 4799999974 78999999999999999999
Q ss_pred CCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccccccc
Q psy11047 353 LIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 432 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~ 432 (943)
..|++||+|+|||++|++|||++|++ +|++||+ |+||||||||+ ++
T Consensus 238 ~~p~~vvataGTT~~GaiDpl~eI~~--------------------i~~~~~i-------wlHVDaA~gg~-~~------ 283 (490)
T PLN02880 238 LIPFFLCATVGTTSSTAVDPLLELGK--------------------IAKSNGM-------WFHVDAAYAGS-AC------ 283 (490)
T ss_pred CccEEEEEecCCCcCcccCcHHHHHH--------------------HHHHcCC-------EEEEehhhHHH-HH------
Confidence 99999999999999999999999999 9999999 99999999998 33
Q ss_pred ccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCc
Q psy11047 433 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEP 503 (943)
Q Consensus 433 ~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p 503 (943)
++++++++++|+++||||++|+||||+ +|++..+..++...+
T Consensus 284 -----------------------------~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~ 334 (490)
T PLN02880 284 -----------------------------ICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNP 334 (490)
T ss_pred -----------------------------hCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCH
Confidence 567889999999999999999999999 677777777888899
Q ss_pred cccccCCC--CcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccc
Q psy11047 504 LYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 581 (943)
Q Consensus 504 ~YL~~~~~--g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~ 581 (943)
.||.+... ...+|+.+|++++|||++|+++|++|+.+|.+||++++++
T Consensus 335 ~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~------------------------------ 384 (490)
T PLN02880 335 EFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRN------------------------------ 384 (490)
T ss_pred HHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHH------------------------------
Confidence 99976432 2246889999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC-------ChHHHHHHHHHhccCc
Q psy11047 582 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE-------NILTEKLLKRLNSKGR 654 (943)
Q Consensus 582 ~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~-------n~l~~~Ll~~L~~~G~ 654 (943)
++++|+++++.|++.|+||++.++.+++||||+.+. |.+|.+|+++|+++|.
T Consensus 385 ---------------------~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~ 443 (490)
T PLN02880 385 ---------------------HIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGK 443 (490)
T ss_pred ---------------------HHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Confidence 467999999999999999999999999999999752 5678899999999999
Q ss_pred EEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 655 LHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 655 ~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
++++++.++++.++|+ +.+|.|+++||+.+++.|.+++.++..+
T Consensus 444 ~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 444 IFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred EEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 8899999999999999999999887553
No 4
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=1.5e-68 Score=621.18 Aligned_cols=453 Identities=16% Similarity=0.166 Sum_probs=371.7
Q ss_pred eecCCCCCCChHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy11047 111 VVNPQSRKIPLIPVILVGKEMVDYIADYLEN--IRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITH 188 (943)
Q Consensus 111 fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~--~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~ 188 (943)
|-.|.+.+ ..+....+++.+.++||+.+ ...+++.+.+.++.. ...+|++|.+.+++++++.+.++++++|
T Consensus 14 f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 86 (522)
T TIGR03799 14 FTVPEAPD---STLGRIEQKISQNLAGFLQEHIVAIEKPLSEIEKDFS----SAEIPEQPTFVSEHTQFLLDKLVAHSVH 86 (522)
T ss_pred cCCCCCCc---hHHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhccc----ccCCCCCCCChHHHHHHHHHHHHcCCCC
Confidence 45555544 56666777777777777666 444466665554433 3578999999999999999999999999
Q ss_pred CCCCceeEEccCC-CChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCC-Ccccccc--CcCCCCcEEEc
Q psy11047 189 WQSPYMHAYFPAL-NSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGL-PEEFLHT--KVDSPGGGVLQ 264 (943)
Q Consensus 189 ~~sPrf~g~~~~~-~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~-p~~fl~~--~~~~~~~GvfT 264 (943)
|+||+|+|||+++ +.+...+++ +++++|+|++.|+.||++++||++|++||++|++. ++.|... .....++|+||
T Consensus 87 ~~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~t 165 (522)
T TIGR03799 87 TASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFC 165 (522)
T ss_pred CCCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEc
Confidence 9999999999996 333334777 66789999999999999999999999999999963 3222110 11234689999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhc----ccCCCchh---hhcCCceEEEecCCCchHHHHHHH-HCC--ccEEEEecCCCC
Q psy11047 265 TTASESTLICLLAGRTEAIRKYQ----QSHPELEH---AEINSRLVAYCSDQAHSSVEKAGL-IGL--VNMRYIESDDKL 334 (943)
Q Consensus 265 sGGTeANL~AL~aAR~~~l~~~~----~~~pGl~~---~~i~~~~vV~~S~~aHySv~KAa~-LG~--~~v~~Vp~D~~g 334 (943)
+|||+||++|||+||+++++..+ ....|+.. +....+++||+|+.+|||+.||+. +|. .+++.||+|++|
T Consensus 166 sGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g 245 (522)
T TIGR03799 166 SGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANN 245 (522)
T ss_pred CchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCC
Confidence 99999999999999998654321 11122211 001246899999999999999994 554 489999999999
Q ss_pred CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 335 SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 335 rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
+||+++|+++|+++.++|..|++|++|+|||++|++|||++|++ +|++||+ |+
T Consensus 246 ~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~--------------------i~~~~g~-------~l 298 (522)
T TIGR03799 246 RIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMAD--------------------IAQELGC-------HF 298 (522)
T ss_pred cCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHH--------------------HHHHcCC-------eE
Confidence 99999999999999888989999999999999999999999999 9999999 99
Q ss_pred hHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC------
Q psy11047 415 KFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR------ 488 (943)
Q Consensus 415 HVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~------ 488 (943)
||||||||+ .+ ++++++++++|+++||||++|+|||++
T Consensus 299 HVDaA~gg~-~~-----------------------------------~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G 342 (522)
T TIGR03799 299 HVDAAWGGA-TL-----------------------------------LSNTYRHLLKGIERADSVTIDAHKQLYVPMGAG 342 (522)
T ss_pred EEEchhhhH-HH-----------------------------------hCHHHHHHhcCchhCCEEEEChhhcCCcCcccE
Confidence 999999987 33 467788999999999999999999998
Q ss_pred ---ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Q psy11047 489 ---VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVD 565 (943)
Q Consensus 489 ---vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~ 565 (943)
+|++.. .+.+...++|+...+ ..|++++++++||+++++++|++|+.+|..||++++++
T Consensus 343 ~llvr~~~~-~~~~~~~~~Yl~~~~---~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~-------------- 404 (522)
T TIGR03799 343 MVLFKDPAL-MSAIEHHAEYILRKG---SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQ-------------- 404 (522)
T ss_pred EEEEeCHHH-HHHhccCcchhcCCC---CCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHH--------------
Confidence 677654 356777889986432 24678899999999999999999999999999999999
Q ss_pred cccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecC--------
Q psy11047 566 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG-------- 637 (943)
Q Consensus 566 ~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g-------- 637 (943)
.+++|++|++.|++.|+|+++.+|.+++||||+.+
T Consensus 405 -------------------------------------~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~ 447 (522)
T TIGR03799 405 -------------------------------------SIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALA 447 (522)
T ss_pred -------------------------------------HHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhccccc
Confidence 46799999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHhccCcEEEeecccC-------CCcEEEE-eecCCCCHHHHHHHHHHHH
Q psy11047 638 -------------ENILTEKLLKRLNSKGRLHCVPASLR-------IQGLGRA-QNFTRTTNDDITRDWNEIR 689 (943)
Q Consensus 638 -------------~n~l~~~Ll~~L~~~G~~~~s~t~~~-------g~~~lR~-v~~~~tt~edId~ll~~I~ 689 (943)
.|.+|+.+.++++++|..|+++|.++ +..++|+ ++||.||.+||+.+++.-+
T Consensus 448 ~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~ 520 (522)
T TIGR03799 448 KADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQR 520 (522)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhh
Confidence 14577899999999999999988765 3478999 8899999999999987644
No 5
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=3.9e-68 Score=624.03 Aligned_cols=489 Identities=14% Similarity=0.117 Sum_probs=380.7
Q ss_pred cceeeecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcC
Q psy11047 107 GKIFVVNPQSRKIPLIPVILVGKEMVDYIADYLENIRDRRVY--PDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMP 184 (943)
Q Consensus 107 ~~~~fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~--p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~ 184 (943)
.+.+|||||+||. +.|++++.+++|.+.+|+++.. .+ +.++|.++++ ....+...+++++++++.+.+.+
T Consensus 4 ~~a~flgpk~en~--~~~~~~~~~~~~~~~~~r~~~~---p~d~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~ 75 (608)
T TIGR03811 4 LNALFIGDKAENG--QLYKDLLNKLVDEHLGWRQNYM---PQDKPVISPQERTS---KSFTKTVNNMKDVLDELSSRLRT 75 (608)
T ss_pred hhheeecCcccCH--HHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCHHHhcc---cccccCccCHHHHHHHHHHHHhc
Confidence 3678999999995 6899999999999999998822 22 3456666655 25566677899999999999999
Q ss_pred CCCCCCCC-ceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE
Q psy11047 185 GITHWQSP-YMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL 263 (943)
Q Consensus 185 ~~~~~~sP-rf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf 263 (943)
++++|+|| ||+|||++++++|+++|+++++++|+|++.|+.||++++||++|++|||+|+|++. ++|+|
T Consensus 76 ~sv~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~----------~~G~~ 145 (608)
T TIGR03811 76 ESVPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN----------GWGHI 145 (608)
T ss_pred CCCCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC----------CCeEE
Confidence 99999999 99999999999999999999999999999999999999999999999999999985 48999
Q ss_pred cCChHHHHHHHHHHHHHHHH-----Hhhcc------cCCC----------------------chhh-----hcCCce-EE
Q psy11047 264 QTTASESTLICLLAGRTEAI-----RKYQQ------SHPE----------------------LEHA-----EINSRL-VA 304 (943)
Q Consensus 264 TsGGTeANL~AL~aAR~~~l-----~~~~~------~~pG----------------------l~~~-----~i~~~~-vV 304 (943)
|+|||+||++|||+||+... +.... ..++ +... ....++ ++
T Consensus 146 TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~v 225 (608)
T TIGR03811 146 VADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKW 225 (608)
T ss_pred eCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEE
Confidence 99999999999999999641 11000 0000 0000 001223 79
Q ss_pred EecCCCchHHHHHH-HHCC--ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 305 YCSDQAHSSVEKAG-LIGL--VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~LG~--~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++|+.+|||+.||+ .+|. .+++.||+|++++||+++|++.|+++.++|.+|++||+|+|||++|+||||++|++
T Consensus 226 l~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~--- 302 (608)
T TIGR03811 226 LVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVA--- 302 (608)
T ss_pred EECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHH---
Confidence 99999999999999 4555 58999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCchHHHH---HHcCCCCCccchhhhHHhhhcCCCc-cccccc---cccceeeeeecchhhhHHHHHHH
Q psy11047 382 VKGLGFYKMKLQTNFPNFI---LSYFPKFQSVRLAQKFEALVLGDPR-FEIPAA---RHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~ia---r~~Gl~~~~l~lwLHVDAA~GG~~a-feLp~~---~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+| +++|+ .+|+||||||||+.. +-+.-+ .++...+.++.....+
T Consensus 303 -----------------l~~~~~~~gl-----~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f------- 353 (608)
T TIGR03811 303 -----------------LRNKLMKEGI-----YFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVF------- 353 (608)
T ss_pred -----------------HHHHHHHcCC-----ceeEeeeccccchhhhhhccccccccccchhhccccccccc-------
Confidence 87 66787 456999999999731 100000 0000000000000000
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCC
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLS 525 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~S 525 (943)
.+....++++++++++|+++|||||+||||||+ +|++. +.+.+...++||...+.+.....+.++++||
T Consensus 354 -~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legS 431 (608)
T TIGR03811 354 -TEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGS 431 (608)
T ss_pred -ccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecC
Confidence 011112456788999999999999999999999 78875 5567788999997643322224678899999
Q ss_pred CC-cchHHHHHHHHHH--HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHH
Q psy11047 526 KR-FRALKLWFVIRNF--GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602 (943)
Q Consensus 526 Rr-frALklW~tLr~~--G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~ 602 (943)
|+ ++|+++|++++.+ |.+||+++|++
T Consensus 432 R~ga~AlklW~~lr~l~~G~~Gyg~~i~~--------------------------------------------------- 460 (608)
T TIGR03811 432 KAGATAASVWAAHKVLPLNVTGYGKLIGA--------------------------------------------------- 460 (608)
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------------------------------------
Confidence 96 7899999999999 99999999999
Q ss_pred HHHHHHHHHHHHhC------CCCeEE--ecCCCccEEEEEecC--------CChHHHHHHHHHh-ccC-----cEEEeec
Q psy11047 603 SVRLAQKFEALVLG------DPRFEI--PAARHLGMVVIRLLG--------ENILTEKLLKRLN-SKG-----RLHCVPA 660 (943)
Q Consensus 603 ~~~LA~~l~~~L~~------~p~~eI--l~~~~l~iV~Fr~~g--------~n~l~~~Ll~~L~-~~G-----~~~~s~t 660 (943)
.+++|++|++.|++ .|+||+ +.+|++|+||||+.. .|++|.++.+++. .+| .++++.|
T Consensus 461 ~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t 540 (608)
T TIGR03811 461 SIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHT 540 (608)
T ss_pred HHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHHHHHHHHHHHHhhccccCCCCCcceEeeec
Confidence 45788999999988 688888 789999999999863 2567888888876 233 3445544
Q ss_pred cc--------------------------CCCcEEEE-eecCCCCH-HHHHHHHHHHHHHHHHHHHH
Q psy11047 661 SL--------------------------RIQGLGRA-QNFTRTTN-DDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 661 ~~--------------------------~g~~~lR~-v~~~~tt~-edId~ll~~I~~~~~~ll~~ 698 (943)
.+ ..-.+||. +++|..++ +.++.+++.|+.+..+.+.+
T Consensus 541 ~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (608)
T TIGR03811 541 DFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEKLEK 606 (608)
T ss_pred ccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHHHHh
Confidence 21 11358998 88888665 77889998888887776654
No 6
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=1.2e-69 Score=608.30 Aligned_cols=361 Identities=32% Similarity=0.544 Sum_probs=318.0
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHH
Q psy11047 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTEL 232 (943)
Q Consensus 153 p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateL 232 (943)
|+++++.++..+|++|++++++++++.+.+.++..+|+||+|+||+++++++++++|++++.++|+|+..|+.+|++++|
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~ 80 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI 80 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
|.++++|+++|+|+|.++.. ...++|+||+|||+||++||++||+++.++.+.. |.. + ..++++|+|+++||
T Consensus 81 E~~vi~~l~~l~g~~~~~~~---~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~--~~~--~-~~~~~i~~s~~aH~ 152 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTF---SKDAGGVFTSGGTEANLYALLAARERALPRSKAK--GVE--E-IPKPVIYVSEQAHY 152 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTS---TTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH--TTT--H-CSSEEEEEETTS-T
T ss_pred hHHHHHHHHHHhCCcccccc---cCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc--ccc--c-cccccccccccccc
Confidence 99999999999999976422 1237899999999999999999999987654432 211 0 36789999999999
Q ss_pred HHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 313 SVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 313 Sv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
|+.||+. +|.. ++.||+|++|+||+++|+++|+++.++|..|++|++|+|||.+|++||+++|++
T Consensus 153 S~~Kaa~~lGlg-~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~------------- 218 (373)
T PF00282_consen 153 SIEKAARILGLG-VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIAD------------- 218 (373)
T ss_dssp HHHHHHHHTTSE-EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHH-------------
T ss_pred HHHHhcceeeeE-EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhh-------------
Confidence 9999994 6765 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|++|++ |+||||||||+ ++ +++.+++++.
T Consensus 219 -------i~~~~~~-------wlHVDaA~gg~-~~-----------------------------------~~~~~~~~~~ 248 (373)
T PF00282_consen 219 -------ICEKYNI-------WLHVDAAYGGS-AL-----------------------------------LSPEYRHLLF 248 (373)
T ss_dssp -------HHHHCT--------EEEEEETTGGG-GG-----------------------------------GHCTTGGGGT
T ss_pred -------hccccce-------eeeeccccccc-cc-----------------------------------cccccccccc
Confidence 9999999 99999999997 44 5788889999
Q ss_pred CCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCC--CCcccccCccccCCCCCcchHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHEN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~ 540 (943)
|+++||||++|+||||+ +|++..+..++...++||.+.. .+...++.++++++||+++++++|++|+.+
T Consensus 249 gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~ 328 (373)
T PF00282_consen 249 GIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSL 328 (373)
T ss_dssp TGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhc
Confidence 99999999999999999 7998888888888999999653 344568889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCe
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 620 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~ 620 (943)
|.+||+++|++ .+++|++|++.|++.|+|
T Consensus 329 G~~G~~~~i~~---------------------------------------------------~~~~a~~l~~~l~~~~~~ 357 (373)
T PF00282_consen 329 GREGYRERIRR---------------------------------------------------CIELARYLADRLRKDPRF 357 (373)
T ss_dssp HHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHTSTTE
T ss_pred CHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHHHhCCCE
Confidence 99999999999 467899999999999999
Q ss_pred EEecCCCccEEEEEec
Q psy11047 621 EIPAARHLGMVVIRLL 636 (943)
Q Consensus 621 eIl~~~~l~iV~Fr~~ 636 (943)
|++.++.+++||||++
T Consensus 358 el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 358 ELVNEPDLNIVCFRYK 373 (373)
T ss_dssp EESSTTSSSEEEEEES
T ss_pred EEEcCCCceEEEEEeC
Confidence 9999999999999985
No 7
>KOG0629|consensus
Probab=100.00 E-value=5.5e-65 Score=557.89 Aligned_cols=460 Identities=19% Similarity=0.260 Sum_probs=397.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEcc
Q psy11047 122 IPVILVGKEMVDYIADYLENIRDR--RVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFP 199 (943)
Q Consensus 122 e~fr~~~~~~vd~i~dyl~~~~~~--pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~ 199 (943)
+..+..+.++++.+.+|...--+| .|.+.+.|..|+..++.++|+++++.++|+++.++.+..+.. ..||||+....
T Consensus 31 ~~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl~y~vK-TgHprffNQl~ 109 (510)
T KOG0629|consen 31 EVTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTLKYSVK-TGHPRFFNQLS 109 (510)
T ss_pred hhhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHHHhhhc-cCCCcchhhhc
Confidence 455888889999999996654444 789999999999999999999999999999999998775544 58999999999
Q ss_pred CCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHH
Q psy11047 200 ALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGR 279 (943)
Q Consensus 200 ~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR 279 (943)
++..+.+++|++++++.|.|.++|+.+|+.+.||.+|+..+.+++||+.. ++|+|++||+.||++|+.+||
T Consensus 110 ~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~---------~DgIf~pggsisn~Ya~~~Ar 180 (510)
T KOG0629|consen 110 SGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG---------GDGIFAPGGSISNMYAMNCAR 180 (510)
T ss_pred cCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC---------CCceecCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 689999999999999999999
Q ss_pred HHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 280 TEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 280 ~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
.+.+++.+. .|+. ..+++++|+|+++|||+.||+ .+ |..+++.|++|++|.|++++||+.|-++.++|..|+
T Consensus 181 yk~~Pe~K~--~Gm~---~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf 255 (510)
T KOG0629|consen 181 YKNFPEVKT--KGMF---ALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPF 255 (510)
T ss_pred hhcCchhhh--hhhh---cCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCe
Confidence 887654332 2332 247899999999999999988 44 567999999999999999999999999999999999
Q ss_pred EEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccce
Q psy11047 357 FIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 436 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~ 436 (943)
+|++|+|||+.|++|||..|++ +|++|++ |+||||||||+ .+
T Consensus 256 ~vnaTaGTTV~GAFDdL~~iad--------------------iC~k~~l-------WmHvDAAwGGg-lL---------- 297 (510)
T KOG0629|consen 256 FVNATAGTTVLGAFDDLNGIAD--------------------ICEKHKL-------WMHVDAAWGGG-LL---------- 297 (510)
T ss_pred EEEecCCceeeeccCcHHHHHH--------------------HHHhcCE-------EEEeecccccc-cc----------
Confidence 9999999999999999999999 9999999 99999999998 43
Q ss_pred eeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccc
Q psy11047 437 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLR 507 (943)
Q Consensus 437 VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~ 507 (943)
++..+|+++.|+++|||++++|||+++ +|....|.++...++.||+
T Consensus 298 -------------------------mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLF 352 (510)
T KOG0629|consen 298 -------------------------MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLF 352 (510)
T ss_pred -------------------------cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhh
Confidence 566789999999999999999999999 6777777778788999999
Q ss_pred cCC--CCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccccc
Q psy11047 508 HEN--SGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 585 (943)
Q Consensus 508 ~~~--~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~ 585 (943)
..+ +...+|.++..++|+|+...+|+|++|++-|..||++.|++++. +++|| .++|+++.+|+.+.
T Consensus 353 q~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~---lA~yl---------~~~lrer~~~~~l~ 420 (510)
T KOG0629|consen 353 QQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLR---LAEYL---------YDRLREREGFEMLF 420 (510)
T ss_pred ccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHH---HHHHH---------HHHHHhcccceehh
Confidence 876 34568899999999999999999999999999999999999887 56777 68899999988875
Q ss_pred -ccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCC
Q psy11047 586 -LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 664 (943)
Q Consensus 586 -~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g 664 (943)
.+|++.|+||||+|++ ++--+ ..+.... | ...+...+..++..+|.++++..++..
T Consensus 421 ~~~pe~~nv~fw~vp~~--lR~~~-------~~~e~~~-----------r---L~kVaPkIK~~Mm~~Gt~Mi~YqPl~~ 477 (510)
T KOG0629|consen 421 ELEPEHVNVCFWYVPPS--LRGWQ-------ENPERDS-----------R---LVKVAPKIKERMMKKGTTMIGYQPLGD 477 (510)
T ss_pred cCCCceEEEeeccCchH--hccCc-------ccchhhh-----------H---HHhhCcHHHHHHHhccceeeEeccccc
Confidence 5699999999999983 32100 1110000 0 012346788899999999998776654
Q ss_pred -CcEEEE-eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 665 -QGLGRA-QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 665 -~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.++|+ +.++..+.+|++.++++|.++++.
T Consensus 478 ~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 478 KPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred ccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 458999 778889999999999999998764
No 8
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-53 Score=485.43 Aligned_cols=423 Identities=21% Similarity=0.197 Sum_probs=334.1
Q ss_pred HHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHH-HcCCCCCCCCCceeEEccCCCChHHHHHHHH
Q psy11047 134 YIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKV-IMPGITHWQSPYMHAYFPALNSYPSLLGDML 212 (943)
Q Consensus 134 ~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~-I~~~~~~~~sPrf~g~~~~~~s~~silgd~L 212 (943)
.+.++....+.+.+-+...|.+-.......+|+.|.+.++++.++... +.+...++.||+++.|..+.+.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~ 82 (460)
T COG0076 3 GLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELL 82 (460)
T ss_pred hHHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHH
Confidence 445555555555555555565555555678999999999999999887 6667777789999999999999999999999
Q ss_pred HHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCC
Q psy11047 213 SDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPE 292 (943)
Q Consensus 213 ~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pG 292 (943)
..++|+|.+.|+.+|+++++|++|++|+++|+|+|+. +.|+||+||||||++|+++||+++.+..... .+
T Consensus 83 ~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~---------~~G~~t~GgTean~lal~aar~~~~~~~~~~-~~ 152 (460)
T COG0076 83 VSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE---------ASGTFTSGGTEANLLALLAARERWRKRALAE-SG 152 (460)
T ss_pred HHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC---------CceEEEcChHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 9999999999999999999999999999999999865 5899999999999999999999876432211 11
Q ss_pred chhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 293 LEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 293 l~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
. -.+.++||+|+.+|+|+.||+. +|. .++.++.+. +.+||+++|+++|+++...| +||+|+|||.+|++
T Consensus 153 ~----~~~~P~ii~s~~aH~s~~Kaa~~lG~-~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~i 223 (460)
T COG0076 153 K----PGGKPNIVCSETAHFSFEKAARYLGL-GLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSI 223 (460)
T ss_pred c----cCCCCeEEecCcchhHHHHHHHHhCC-CceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCcc
Confidence 1 0134589999999999999995 554 556666655 89999999999999998776 89999999999999
Q ss_pred ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHH
Q psy11047 371 DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEK 450 (943)
Q Consensus 371 DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~k 450 (943)
|||++|++ +|++||+ |+||||||||+ .+ |
T Consensus 224 Ddi~~ia~--------------------ia~~~~i-------~lHVDAA~GG~-~~--p--------------------- 252 (460)
T COG0076 224 DDIEELAD--------------------IAEEYGI-------WLHVDAAFGGF-LL--P--------------------- 252 (460)
T ss_pred CCHHHHHH--------------------HHHHcCC-------cEEEEccccce-ee--c---------------------
Confidence 99999999 9999999 99999999998 22 1
Q ss_pred HHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccc
Q psy11047 451 LLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQ 521 (943)
Q Consensus 451 ll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~t 521 (943)
+..+...+..++++||||++|+||||+ +||+..+.+.....+.|+... +..+++
T Consensus 253 -----------f~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~------~~~~~t 315 (460)
T COG0076 253 -----------FLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGG------GIPNFT 315 (460)
T ss_pred -----------ccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCC------CcCcee
Confidence 122222236789999999999999999 788877777767777777542 345678
Q ss_pred cCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCc
Q psy11047 522 IPLSKRF-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPK 600 (943)
Q Consensus 522 ie~SRrf-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~ 600 (943)
+.+||.. .++++|++++.+|.+||++++++
T Consensus 316 i~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~------------------------------------------------- 346 (460)
T COG0076 316 ILGSRPGRQALALYANLRRLGREGYRKLLDR------------------------------------------------- 346 (460)
T ss_pred EeeccchHHHHHHHHHHHHhCHhHHHHHHHH-------------------------------------------------
Confidence 8999975 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEE-----------EeecccCCCcEEE
Q psy11047 601 FQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH-----------CVPASLRIQGLGR 669 (943)
Q Consensus 601 ~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~-----------~s~t~~~g~~~lR 669 (943)
.+++|+++++.|.+.+.||++.+|.+++||||+++....-....+++++.||.. +..+++.++..++
T Consensus 347 --~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~ 424 (460)
T COG0076 347 --TLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLK 424 (460)
T ss_pred --HHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeeh
Confidence 457899999999999999999999999999999653222344555565555532 2333444455666
Q ss_pred E-eecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 670 A-QNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 670 ~-v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+ +.++.++.++ +.++..+...+.++
T Consensus 425 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 450 (460)
T COG0076 425 FIVANLLITDRE-ESLLALIEEPGREI 450 (460)
T ss_pred hhcchhhhhhhh-HHHHHHhhhhhhhh
Confidence 6 5666666666 55555554444443
No 9
>PLN02263 serine decarboxylase
Probab=100.00 E-value=4.8e-53 Score=483.01 Aligned_cols=356 Identities=14% Similarity=0.156 Sum_probs=294.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCCh-HHHHHHHHHHHHhccCccccCCh---hHHHHHHHHHHHHHHHhCC
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSY-PSLLGDMLSDAINCLGFTWASSP---ACTELEIITMNWLGKMIGL 246 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~-~silgd~L~~alN~n~~~~~~SP---aateLE~~Vi~wLa~LlG~ 246 (943)
++++|+++.+.+.++..| |+|| |...++ ++.+++++...+|+.++.|..+| .+++||++|++|+++|+|+
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~ 148 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI 148 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence 689999999999887554 8999 666677 89999999999999999999999 7999999999999999999
Q ss_pred CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccE
Q psy11047 247 PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNM 325 (943)
Q Consensus 247 p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v 325 (943)
|++ ..+|+||+||||||++||++||++. ++.++|+|+++|||+.||+. +|. ++
T Consensus 149 p~~--------~~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa~llgi-~~ 202 (470)
T PLN02263 149 EKN--------EYWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRM-EC 202 (470)
T ss_pred CCC--------CCeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHHHhcCC-cc
Confidence 863 1489999999999999999999852 23479999999999999996 555 89
Q ss_pred EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCC
Q psy11047 326 RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 405 (943)
Q Consensus 326 ~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl 405 (943)
+.||+|++|+||+++|+++|.++. ..|++||+|+|||.+|+||||++|++ +|+++|+
T Consensus 203 ~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~--------------------i~~~~g~ 259 (470)
T PLN02263 203 VKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIK--------------------TLEECGF 259 (470)
T ss_pred eEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHH--------------------HHHHcCC
Confidence 999999999999999999998774 35999999999999999999999999 9999985
Q ss_pred CCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCC
Q psy11047 406 KFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSS 485 (943)
Q Consensus 406 ~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK 485 (943)
. .-++|+||||||||+ .+ |. ... .+.+.+.+.||||++||||
T Consensus 260 ~--~~~iwlHVDAA~GG~-~l--Pf--------------------------------~~~-~~~~df~~~vDSIsvD~HK 301 (470)
T PLN02263 260 S--QDRFYIHCDGALFGL-MM--PF--------------------------------VKR-APKVTFKKPIGSVSVSGHK 301 (470)
T ss_pred c--cCCeeEEEeccchhh-Hh--hh--------------------------------ccc-ccccCCCcCccEEEECCcc
Confidence 1 123599999999998 32 21 111 1234455679999999999
Q ss_pred ccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11047 486 LLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIKGLQKHIREIFSG 555 (943)
Q Consensus 486 ~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~Gl~~~I~~~l~~ 555 (943)
|++ +|++ ..+++..+++||... +.++++||++ +++++|++|+.+|.+||++++++
T Consensus 302 ~l~~P~~cgvll~R~~--~~~~~~~~~~Yl~~~---------d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~---- 366 (470)
T PLN02263 302 FVGCPMPCGVQITRME--HINVLSSNVEYLASR---------DATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK---- 366 (470)
T ss_pred ccCCCcCEEEEEEehh--hHhhhccChHhhCCC---------CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH----
Confidence 999 5543 235677889999753 3578999997 68999999999999999999999
Q ss_pred CCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEe
Q psy11047 556 LALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRL 635 (943)
Q Consensus 556 ~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~ 635 (943)
++++|+++++.|++. +++++.+|..++|+|+-
T Consensus 367 -----------------------------------------------~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~ 398 (470)
T PLN02263 367 -----------------------------------------------CLRNAHYLKDRLREA-GISAMLNELSSTVVFER 398 (470)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHhC-CCeEEeCCCceEEEEec
Confidence 467899999999988 67777889999999985
Q ss_pred cCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 636 LGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 636 ~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+.. . +..+|| +++. .+..+|+++.|+++.+.|++|++.|++......
T Consensus 399 p~~-----~----~~~~gW-~L~~----~~~~~Hivvmphv~~~~id~fi~DL~~~~~~~~ 445 (470)
T PLN02263 399 PKD-----E----EFVRRW-QLAC----QGNIAHVVVMPSVTIEKLDYFLKELVEKRSTWY 445 (470)
T ss_pred Cch-----H----Hhhcce-EEcc----CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 421 1 124676 4443 224699999999999999999999988766443
No 10
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=100.00 E-value=5.6e-52 Score=473.32 Aligned_cols=391 Identities=14% Similarity=0.124 Sum_probs=321.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLG 241 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa 241 (943)
..+|++|.+.+++++++...+.. .+..||+|++|++++..+. +.+++..++|+|.++|..+|.++++|.++++|++
T Consensus 15 ~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la 90 (431)
T TIGR01788 15 YRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNMLA 90 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHH
Confidence 48999999999999999987643 4556899999998876543 6899999999998999999999999999999999
Q ss_pred HHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-H
Q psy11047 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-I 320 (943)
Q Consensus 242 ~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-L 320 (943)
+|+|+++. ....+|++||||||||++||++||++...+.+. .|. . ..+++||+|+++|+|+.|++. +
T Consensus 91 ~llg~~~~------~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~--~g~---~-~~~~~ii~s~~~H~sv~ka~~~l 158 (431)
T TIGR01788 91 DLWHAPAK------DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA--AGK---P-TDKPNLVMGSNVQVCWEKFARYF 158 (431)
T ss_pred HHhCCCCC------CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh--cCC---C-CCCcEEEEcCcchHHHHHHHHHc
Confidence 99999821 001578999999999999999998754322111 111 0 134689999999999999995 5
Q ss_pred CCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHH
Q psy11047 321 GLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 399 (943)
Q Consensus 321 G~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~i 399 (943)
| .+++.||+|++ ++||+++|+++|+++ +++|++|+|||++|++||+++|++ +
T Consensus 159 g-~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~--------------------i 211 (431)
T TIGR01788 159 D-VELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALND--------------------A 211 (431)
T ss_pred C-ceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHH--------------------H
Confidence 6 48999999876 599999999999876 789999999999999999999999 9
Q ss_pred HHHc------CCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 400 ILSY------FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 400 ar~~------Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
|+++ |+ |+||||||||+ .+ |. .+++.+..+. +
T Consensus 212 ~~~~~~~~~~~~-------~~HvDaaq~g~-~~--p~-------------------------------~~~~~~~~~~-~ 249 (431)
T TIGR01788 212 LDEYNAKTGWDI-------PIHVDAASGGF-IA--PF-------------------------------VYPDLEWDFR-L 249 (431)
T ss_pred HHHHHhhhCCCc-------eEEEecccHHH-HH--HH-------------------------------hCCCchhhcC-C
Confidence 9999 89 99999999987 32 11 1233333343 6
Q ss_pred CCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc-chHHHHHHHHHHHHH
Q psy11047 474 GRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF-RALKLWFVIRNFGIK 543 (943)
Q Consensus 474 e~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf-rALklW~tLr~~G~~ 543 (943)
++|||+++|+|||++ +|++..+...+...++|+... ..++++++||++ +++++|+.|+.+|..
T Consensus 250 ~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~-------~~~~t~~~sR~g~~al~~w~~l~~lG~~ 322 (431)
T TIGR01788 250 PRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGD-------EPTFTLNFSRPANQVIAQYYNFLRLGRE 322 (431)
T ss_pred CCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCC-------CCCcceecCchHHHHHHHHHHHHHhcHH
Confidence 789999999999995 566655555667778898532 224689999996 889999999999999
Q ss_pred HHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe
Q psy11047 544 GLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP 623 (943)
Q Consensus 544 Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl 623 (943)
||++++++ .+++|++|++.|++.|+|+++
T Consensus 323 G~~~i~~~---------------------------------------------------~~~la~~l~~~L~~~~~~el~ 351 (431)
T TIGR01788 323 GYRKIMQN---------------------------------------------------SLDVARYLAEEIAKLGPFEII 351 (431)
T ss_pred HHHHHHHH---------------------------------------------------HHHHHHHHHHHHHhCCCEEEe
Confidence 99999999 467899999999999999999
Q ss_pred cC-CCccEEEEEecCC---ChHHHHHHHHHhccCcEE---EeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 624 AA-RHLGMVVIRLLGE---NILTEKLLKRLNSKGRLH---CVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 624 ~~-~~l~iV~Fr~~g~---n~l~~~Ll~~L~~~G~~~---~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.+ +.+++||||+++. +..+..+.++|+++|+.+ .+|+.+++..++|+++.++++.+.++++++.|+.+...+
T Consensus 352 ~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 352 SDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 97 7999999999863 234688999999999864 456668889999998899999999999999999987654
No 11
>PLN03032 serine decarboxylase; Provisional
Probab=100.00 E-value=4.2e-45 Score=410.03 Aligned_cols=352 Identities=16% Similarity=0.188 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCCh---hHHHHHHHHHHHHHHHhCCC
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSP---ACTELEIITMNWLGKMIGLP 247 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SP---aateLE~~Vi~wLa~LlG~p 247 (943)
..++++.+.+.+. -++..|.||......-++.+..|+....|+.++.+...+ .+.++|.++++|+++|+|++
T Consensus 8 ~~~~~~~~~~~~~-----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 8 MADILASYDKLLA-----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred HHHHHHHHHHHHH-----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4566666666554 257789999988876667898898887777666666544 68999999999999999998
Q ss_pred ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEE
Q psy11047 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMR 326 (943)
Q Consensus 248 ~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~ 326 (943)
++ ..+|+|||||||||++||++||++. ++.++|+|+.+|+|+.||+. +|. .++
T Consensus 83 ~~--------~~~G~fTsGGTEaNl~al~~ar~~~-----------------~~~~vi~s~~~H~Sv~kaa~~lg~-~~~ 136 (374)
T PLN03032 83 KD--------EYWGYITTCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRM-EAV 136 (374)
T ss_pred Cc--------cCCEEEeCchHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceeHHHHHHHHcCC-CCe
Confidence 64 1479999999999999999998641 11368999999999999995 554 578
Q ss_pred EEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCC
Q psy11047 327 YIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPK 406 (943)
Q Consensus 327 ~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~ 406 (943)
.||+|.+|+||+++|+++|+++. ..|++|++++|||++|++||+++|++ +|++||+.
T Consensus 137 ~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~--------------------i~~~~g~~ 193 (374)
T PLN03032 137 KVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILR--------------------ILKELGYT 193 (374)
T ss_pred EeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHH--------------------HHHHhCCC
Confidence 99999999999999999998753 24899999999999999999999999 99999741
Q ss_pred CCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCc
Q psy11047 407 FQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSL 486 (943)
Q Consensus 407 ~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~ 486 (943)
...+|+||||||||+ .. |... ..+.+ +....+|||++|+|||
T Consensus 194 --~~~~~lHvDaA~gg~-~~--p~~~-----------------------------~~~~~----~~~~~vDSis~s~HK~ 235 (374)
T PLN03032 194 --EDRFYIHCDGALFGL-MM--PFVS-----------------------------RAPEV----TFRKPIGSVSVSGHKF 235 (374)
T ss_pred --CCCeeEEEEccchhh-hh--hccC-----------------------------CCccc----CCCcCCcEEEECcccc
Confidence 113399999999987 22 1100 01222 2234699999999999
Q ss_pred cC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11047 487 LR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGL 556 (943)
Q Consensus 487 L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~ 556 (943)
++ +|++ +...+...++||... ++|++|||+ ++++++|++|+.+|.+||+++++++
T Consensus 236 ~g~P~g~G~ll~r~~--~~~~~~~~~~Yl~~~---------d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~---- 300 (374)
T PLN03032 236 LGCPMPCGVALTRKK--HVKALSQNVEYLNSR---------DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHC---- 300 (374)
T ss_pred cCCCcCeEEEEEEch--hhHhhccCCcccCCC---------CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHH----
Confidence 99 3432 224566678898642 468999997 7899999999999999999999994
Q ss_pred CCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEec
Q psy11047 557 ALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 636 (943)
Q Consensus 557 ~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~ 636 (943)
+++|+++++.|++. +++++.+|.+++|+|+-+
T Consensus 301 -----------------------------------------------~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~ 332 (374)
T PLN03032 301 -----------------------------------------------MRNAHYLKDRLTEA-GLTCRLNELSSTVVFERP 332 (374)
T ss_pred -----------------------------------------------HHHHHHHHHHHHhC-CCcEEECCCceEEEEcCC
Confidence 56899999999885 888888999999999976
Q ss_pred CCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 637 GENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 637 g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.. .. +. +|| +++. . +..+|+++.+++|.+.|++|++.|++.
T Consensus 333 ~~----~~----~~-~~w-~l~~--~--~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 333 MD----EA----FI-KKW-QLAC--E--GDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred Cc----Hh----Hh-hee-eecc--c--CCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 31 11 22 465 4443 1 248999888999999999999988753
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=100.00 E-value=3.8e-43 Score=395.19 Aligned_cols=345 Identities=19% Similarity=0.196 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCceeEEccCCCCh-HHHHHHHHHHHHhccCccccCCh----hHHHHHHHHHHHHHHHhCC
Q psy11047 172 DTIMGDIEKVIMPGITHWQSPYMHAYFPALNSY-PSLLGDMLSDAINCLGFTWASSP----ACTELEIITMNWLGKMIGL 246 (943)
Q Consensus 172 e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~-~silgd~L~~alN~n~~~~~~SP----aateLE~~Vi~wLa~LlG~ 246 (943)
.+.|+.+...+. +||+++.+++...++ ++.+++++....|+.+ .|..++ .+.++|.++++|+|+|+|+
T Consensus 8 ~~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~~~~~~~a~l~g~ 80 (380)
T PRK02769 8 QKEIEDFWLYLR------HNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKI 80 (380)
T ss_pred HHHHHHHHHHHH------HhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHHHHHHHHHHHhCC
Confidence 455666665543 678887777666665 6889999999888655 455555 4899999999999999999
Q ss_pred CccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccE
Q psy11047 247 PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNM 325 (943)
Q Consensus 247 p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v 325 (943)
+++. .+|+||+||||||++|+++||++. + ..+||+|+.+|+|+.|++. +|. ..
T Consensus 81 ~~~~--------~~G~~TsGgTean~~a~~~ar~~~--------~---------~~~ii~s~~~H~Sv~ka~~~lg~-~~ 134 (380)
T PRK02769 81 PFNE--------SWGYITNGGTEGNLYGCYLARELF--------P---------DGTLYYSKDTHYSVSKIARLLRI-KS 134 (380)
T ss_pred CCCC--------CCEEEecChHHHHHHHHHHHHHhC--------C---------CcEEEeCCCceehHHHHHHHcCC-CC
Confidence 8541 479999999999999999998741 1 2469999999999999995 554 56
Q ss_pred EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcC-
Q psy11047 326 RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF- 404 (943)
Q Consensus 326 ~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G- 404 (943)
+.|+++++|+||+++|+++|+++ |..|.+|++++|||.+|++||+++|++ +|++||
T Consensus 135 ~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~--------------------i~~~~g~ 191 (380)
T PRK02769 135 RVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQE--------------------ILKKIGI 191 (380)
T ss_pred ceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHH--------------------HHHHhCC
Confidence 78898899999999999999876 556999999999999999999999999 999998
Q ss_pred --CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEc
Q psy11047 405 --PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIV 482 (943)
Q Consensus 405 --l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiD 482 (943)
+ |+|||||+||+ .+ |. .. ....++..+.+|||++|
T Consensus 192 ~~~-------~lHVDaA~gg~-~~--p~--------------------------------~~-~~~~~d~~~~vDsis~s 228 (380)
T PRK02769 192 DDY-------YIHADAALSGM-IL--PF--------------------------------VN-NPPPFSFADGIDSIAIS 228 (380)
T ss_pred Cce-------EEEEEecccce-ee--cc--------------------------------cC-ccccCCccCCCCEEEEC
Confidence 7 99999999987 22 21 00 01123333478999999
Q ss_pred CCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 483 PSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 483 pHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
+|||++ +|++ .+ ..+...+.|+.. .+++++|||+ ++++++|++|+.+|.+||++.++++
T Consensus 229 ~HK~~~~P~g~G~l~~r~~-~~-~~~~~~~~yl~~---------~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~ 297 (380)
T PRK02769 229 GHKFIGSPMPCGIVLAKKK-YV-ERISVDVDYIGS---------RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHC 297 (380)
T ss_pred CcccCCCCCCcEEEEEehh-hh-hhcccCccccCC---------CCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 999998 3332 22 223345566642 2468899997 6899999999999999999999983
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
.++|+++.+.|++ .+++++.+|.+++|+
T Consensus 298 ---------------------------------------------------~~la~~l~~~L~~-~g~~~~~~p~~~~v~ 325 (380)
T PRK02769 298 ---------------------------------------------------LDMAQYAVDRLQA-NGIPAWRNPNSITVV 325 (380)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHh-CCCEEEcCCCceEEE
Confidence 5688999998877 489999999999999
Q ss_pred EEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 633 Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
|+.+. ..+. +|| ++++. +..+|+++.+++|.++|+.+++++...-.
T Consensus 326 f~~~~-----~~~~-----~~w-~l~~~----~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 326 FPCPS-----ERIW-----KKW-HLATS----GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred EcCCC-----HHHH-----hCe-eEccc----CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 98653 2221 555 44432 24899999999999999999988877644
No 13
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=100.00 E-value=1.3e-37 Score=339.61 Aligned_cols=340 Identities=31% Similarity=0.419 Sum_probs=275.6
Q ss_pred eeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLI 273 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~ 273 (943)
|+++++++++++++++++++..+|++...|..+|.++++|.++++|+++++|++.. ...++||+|||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~--------~~~~~~t~ggt~a~~~ 72 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE--------DADGVFTSGGSESNLL 72 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC--------CCCEEEeCChhHHHHH
Confidence 67888888999999999999999999999999999999999999999999999722 1479999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCC
Q psy11047 274 CLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 274 AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~ 353 (943)
++.+++.+..++.+.. +. ...++.+|++|+.+|+|+.+++.+.+.+++.|++++++.+|+++|+++|.++..+|.
T Consensus 73 al~~~~~~~~~~~~~~--~~---~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~ 147 (345)
T cd06450 73 ALLAARDRARKRLKAG--GG---RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGL 147 (345)
T ss_pred HHHHHHHHhhhhhhcc--cc---cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999987543322110 00 001346899999999999999864455899999998899999999999998777777
Q ss_pred CcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccc
Q psy11047 354 IPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 433 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~ 433 (943)
.+.+|+++.+++.+|.++|+++|++ +|++||+ |+|+|+||+++ .+ +
T Consensus 148 ~~~~v~~~~~~~~tG~~~~~~~i~~--------------------~~~~~~~-------~l~vD~a~~~~-~~--~---- 193 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDPLEEIAD--------------------LAEKYDL-------WLHVDAAYGGF-LL--P---- 193 (345)
T ss_pred CcEEEEEecccCCCCCCCCHHHHHH--------------------HHHHhCC-------eEEEechhhHH-Hh--h----
Confidence 7889999999999999999999999 9999999 99999999876 22 0
Q ss_pred cceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCc
Q psy11047 434 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGL 513 (943)
Q Consensus 434 Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~ 513 (943)
.........+++.+|++++++|||++..-+.-+ -|+
T Consensus 194 -----------------------------~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~--------~~~------- 229 (345)
T cd06450 194 -----------------------------FPEPRHLDFGIERVDSISVDPHKYGLVPLGCSA--------VLV------- 229 (345)
T ss_pred -----------------------------ChhhHHHhcCccccCEEEEchhHhhCCCcchHH--------HHH-------
Confidence 111112233456799999999999884322111 011
Q ss_pred ccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccc
Q psy11047 514 AIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 593 (943)
Q Consensus 514 ~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~ 593 (943)
| ++++|..++.+|..|+.+++++
T Consensus 230 ------------~---~~~~~~~l~~l~~~g~~~~~~~------------------------------------------ 252 (345)
T cd06450 230 ------------R---ALKLWATLRRFGRDGYGEHIDR------------------------------------------ 252 (345)
T ss_pred ------------H---HHHHHHHHHHHhHHHHHHHHHH------------------------------------------
Confidence 0 8899999999999999998888
Q ss_pred ccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC---ChHHHHHHHHHhccCcEEEeecccCCCcEEEE
Q psy11047 594 ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE---NILTEKLLKRLNSKGRLHCVPASLRIQGLGRA 670 (943)
Q Consensus 594 ~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~---n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~ 670 (943)
..++++++.+.|++.++++++.++..++++|++.+. +..+..+.++|.++|.+++.+..+.+..++|+
T Consensus 253 ---------~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRi 323 (345)
T cd06450 253 ---------IVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRF 323 (345)
T ss_pred ---------HHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEE
Confidence 356899999999999999999888999999999763 34467899999999887777665556779999
Q ss_pred eec-CCCCHHHHHHHHHHHHH
Q psy11047 671 QNF-TRTTNDDITRDWNEIRN 690 (943)
Q Consensus 671 v~~-~~tt~edId~ll~~I~~ 690 (943)
+++ +.+|.+||+++++.|++
T Consensus 324 s~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 324 VVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EecCCCCCHHHHHHHHHHHHh
Confidence 655 55799999999999875
No 14
>KOG1383|consensus
Probab=100.00 E-value=4.2e-32 Score=302.91 Aligned_cols=419 Identities=16% Similarity=0.163 Sum_probs=325.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHH
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC-LGFTWASSPACTELEIITMNWL 240 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wL 240 (943)
..+|+.|.+-+++++.+.+..+-... |.-.+--+-++... .-.-.++...+|- |....+..|..+++|.++++++
T Consensus 54 ~~lP~~gl~~d~v~~~i~~~~~ld~~-~~~~~vS~~v~~~~---~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~ 129 (491)
T KOG1383|consen 54 FTLPSKGLPKDAVLELINDELMLDGN-PRLGLASGVVYWGE---PELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMI 129 (491)
T ss_pred ecCCCCCCCHHHHHHHHHHHhccCCC-cccCeeeEEEecCC---cchhhHHHHHHhhcCccCccccchhHHHHHHHHHHH
Confidence 47899999999999999987665434 44444444333331 2233555555665 6677889999999999999999
Q ss_pred HHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH
Q psy11047 241 GKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI 320 (943)
Q Consensus 241 a~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L 320 (943)
+.||+.|+. ..|.-|+|||||.+.+....|+++... .|+ ..+.++++...|.+++|++..
T Consensus 130 ~~L~~~~~~---------~~g~~t~G~Ses~l~~~k~~~~~r~~~-----k~I------~~p~iv~~~~v~~a~eK~a~y 189 (491)
T KOG1383|consen 130 ANLFNAPSD---------SCGCGTVGGSESGLAAKKSYRNRRKAQ-----KGI------DKPNIVTPQNVHAAFEKAARY 189 (491)
T ss_pred HHHhcCCcc---------ccCccccccchHHHHHHHHHHHHHHhc-----cCC------CCccccchHHHHHHHHHHHhh
Confidence 999999854 589999999999888888888765431 232 345678899999999999976
Q ss_pred CCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHH
Q psy11047 321 GLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 399 (943)
Q Consensus 321 G~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~i 399 (943)
-...++.||++ .+.+||+..+.+.++++ +.+||+.+|++-+|.+||++++++ +
T Consensus 190 f~v~l~~V~~~~~~~~~D~~k~~~~i~eN------ti~lv~~~~~~p~G~~e~ve~l~~--------------------l 243 (491)
T KOG1383|consen 190 FEVELREVPLDEGDYRVDPGKVVRMIDEN------TIMLVGSLPNFPTGEIEDVEKLAD--------------------L 243 (491)
T ss_pred EEEEEEeeeccccceEecHHHHHHHhccc------eEEEEEEcCCCCccchhhHHHHHH--------------------H
Confidence 56699999998 79999999999999998 789999999999999999999999 7
Q ss_pred HHH-cCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeE
Q psy11047 400 ILS-YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN 478 (943)
Q Consensus 400 ar~-~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADS 478 (943)
+.+ +++ .+|||||.||+ . +| ++ .....++... +.++-|
T Consensus 244 ~~e~w~i-------piHvDa~~GgF-i--~p----~~------------------------~~~~~~fdFr---~p~V~S 282 (491)
T KOG1383|consen 244 LLEIWDI-------PIHVDACLGGF-I--NP----AG------------------------YLNEEEFDFR---VPGVTS 282 (491)
T ss_pred HHHHhCC-------ceeecccCccc-c--cc----cc------------------------ccCccccccC---CCCcee
Confidence 666 999 99999999998 2 22 01 0011234443 456689
Q ss_pred EEEcCCCccC---------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHH
Q psy11047 479 FTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 479 ItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~ 548 (943)
|+.|+||+++ +|++..+...|-..+.|++. ++..+|+.+||+ +.....|++|..+|.+||.+.
T Consensus 283 isa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg-------~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~ 355 (491)
T KOG1383|consen 283 ISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGG-------IYASPTLNGSRPGSQVAAQWAALMSLGEEGYREN 355 (491)
T ss_pred EeeccceeeeeecCcEEEEEcccccccceEEEeccccCc-------cccCcccccCCcccHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999 68887776666667777653 466789999997 567899999999999999999
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCc
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHL 628 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l 628 (943)
.++| ++.++++++.|++++++.+..+|..
T Consensus 356 ~~~i---------------------------------------------------ve~~~~l~egie~i~~i~i~gkp~v 384 (491)
T KOG1383|consen 356 TQNI---------------------------------------------------VETARKLREGIENIKGIKIVGKPLV 384 (491)
T ss_pred HHHH---------------------------------------------------HHHHHHHHHhhhccccceecCCCcE
Confidence 9995 4568899999999999999999665
Q ss_pred cEEEEEecCCChHH-HHHHHHHhccCcEEEeecccCCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy11047 629 GMVVIRLLGENILT-EKLLKRLNSKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITRDWNEIRNTATEILAELAEETQRV 706 (943)
Q Consensus 629 ~iV~Fr~~g~n~l~-~~Ll~~L~~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ll~~~~~~~~~~ 706 (943)
.+++|. .+.++ .+|.+.|.+.||..-+ ++-+..+.+ ++--++.++-.++++..|+++.++|.+.
T Consensus 385 s~~~~~---s~~~~i~elsd~l~~~GW~lna---lq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~-------- 450 (491)
T KOG1383|consen 385 SFILFG---SNDVNIFELSDLLRKKGWILNA---LQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSL-------- 450 (491)
T ss_pred EEEEcc---CCccchhhhhHHHHhcCcCccc---cCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhC--------
Confidence 555554 44343 5788889999996544 233345555 4444455555899999999999998877
Q ss_pred cccccccccccccccccccccccccccCCCCccchhccchhhhcc
Q psy11047 707 QVTKRTRVPLKETKGRNALFGSSLLLANSPMSPKIMNGSFAAVFD 751 (943)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 751 (943)
|.+.|.+..+.||+..-.-...+++.++.++.+++|.
T Consensus 451 --------p~~~~~~~~a~yg~a~~~~~~~~~~e~~~~~~d~~y~ 487 (491)
T KOG1383|consen 451 --------PESKTHGMAAIYGLAQKTPDRSVVDELIVGFLDSVYT 487 (491)
T ss_pred --------CCcccCcccchhhhhhcCCchhhHHHHHHHHHHhhhc
Confidence 5566777799999766644577899999999999887
No 15
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.96 E-value=1e-27 Score=264.45 Aligned_cols=357 Identities=15% Similarity=0.141 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCcc
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEE 249 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~ 249 (943)
+..++|+.+.+.-.++... . ||++.+.+.+. |.++ +.+...+..+.......|...+++.++.+++++++|++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 77 (371)
T PRK13520 3 SEEEILEELEEYRSEDLKY-E--RILSSMCTEPH-PIAR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDA 77 (371)
T ss_pred CHHHHHHHHHHHHhcCCCH-H--HeeeeeecCch-HHHH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC
Confidence 4678888888776655433 3 68888777644 4444 4444455444333333466788889999999999999754
Q ss_pred ccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEe
Q psy11047 250 FLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIE 329 (943)
Q Consensus 250 fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp 329 (943)
.++||+|||+||+.++.+++.... .++..|++++.+|+|+.+++.+-+.+++.||
T Consensus 78 ----------~~~~~~ggt~a~~~a~~~~~~~~~---------------~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~ 132 (371)
T PRK13520 78 ----------YGYITSGGTEANIQAVRAARNLAK---------------AEKPNIVVPESAHFSFDKAADMLGVELRRAP 132 (371)
T ss_pred ----------CeEEecCcHHHHHHHHHHHHhhcc---------------CCCceEEecCcchHHHHHHHHHcCceEEEec
Confidence 589999999999999888764210 0123588899999999998854334889999
Q ss_pred cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCc
Q psy11047 330 SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 409 (943)
Q Consensus 330 ~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~ 409 (943)
++.++.+|+++|+++|+++ +.+|+.+.+++.+|.++|+++|++ +|+++|+
T Consensus 133 ~~~~~~~d~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~--------------------l~~~~g~---- 182 (371)
T PRK13520 133 LDDDYRVDVKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSK--------------------IALENGI---- 182 (371)
T ss_pred CCCCCcCCHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHH--------------------HHHHcCC----
Confidence 9888999999999999765 567788889999999999999999 9999999
Q ss_pred cchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-
Q psy11047 410 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR- 488 (943)
Q Consensus 410 l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~- 488 (943)
|+|||+||+++ .+ +... ..+.+. + ....+|++++++|||++
T Consensus 183 ---~livD~a~~~~-~~--~~~~-----------------------------~~~~~~--~-~~~~vd~~~~s~~K~~~a 224 (371)
T PRK13520 183 ---FLHVDAAFGGF-VI--PFLD-----------------------------DPPNFD--F-SLPGVDSITIDPHKMGLA 224 (371)
T ss_pred ---CEEEEecchhH-HH--Hhhc-----------------------------CCCCcc--c-cCCCCceEEECCccccCc
Confidence 99999999876 21 1000 000011 0 12467999999999976
Q ss_pred --------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy11047 489 --------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALP 559 (943)
Q Consensus 489 --------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~ 559 (943)
++++. +.+.+....+|+... ..+...++|. ..++.+|.++..++.+|+++.+++
T Consensus 225 ~~~~G~~~~~~~~-~~~~l~~~~~~~~~~--------~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~-------- 287 (371)
T PRK13520 225 PIPAGGILFRDES-YLDALAVDTPYLTSK--------KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVER-------- 287 (371)
T ss_pred cCCceEEEEcCHH-HHHhhcccCccccCC--------CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHH--------
Confidence 22222 212222223344321 1223345665 356789999999998998888777
Q ss_pred cccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCC
Q psy11047 560 AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639 (943)
Q Consensus 560 ~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n 639 (943)
..++++++.+.|++. +++++.++..++++|.+++
T Consensus 288 -------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~-- 321 (371)
T PRK13520 288 -------------------------------------------CMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPN-- 321 (371)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCC--
Confidence 356788888888877 8886667788999998862
Q ss_pred hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 640 ~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
.+++.++|.++|.+ +... ....++|+++++.+|++||+++++.|+++.
T Consensus 322 --~~~v~~~L~~~gi~-v~~~--~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 322 --PDEVREKLRERGWR-VSVT--RCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred --HHHHHHHHHHCCce-eccC--CCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 46788888888853 4432 335689998888999999999999998764
No 16
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.96 E-value=2.6e-26 Score=253.89 Aligned_cols=361 Identities=17% Similarity=0.166 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccc
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEF 250 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~f 250 (943)
.+++++++.+ +..++++.+++|+++.+...+.++. .. .+..++..+.......|....++..+.+++++++|+++.
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~- 77 (373)
T TIGR03812 2 EEEVLEELKE-YRSEDLKYSDGRILGSMCTNPHPIA-VK-AYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDA- 77 (373)
T ss_pred HHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCchHHH-HH-HHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC-
Confidence 4688999988 4567777799999988887655443 22 222333333222233466788899999999999999764
Q ss_pred cccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec
Q psy11047 251 LHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES 330 (943)
Q Consensus 251 l~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~ 330 (943)
.+++++|||++|+.++.+++..... + .+...|++++.+|+++.+++...+.+++.+++
T Consensus 78 ---------~~~~~~g~~~~~~~~~~~~~~~~~~-------~------~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 78 ---------YGYIVSGGTEANIQAVRAAKNLARE-------E------KRTPNIIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred ---------CeEEeccHHHHHHHHHHHHHHHHhc-------c------CCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence 6889999999999888766542110 0 01235788999999999988644458899999
Q ss_pred CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCcc
Q psy11047 331 DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 410 (943)
Q Consensus 331 D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l 410 (943)
+.++.+|+++|+++++++ +..++.+.+++.+|.++|+++|.+ +|+++|+
T Consensus 136 ~~~~~~d~~~l~~~l~~~------~~~vv~~~~~~~tG~~~~~~~i~~--------------------l~~~~~~----- 184 (373)
T TIGR03812 136 DEDYTVDVKDVEDLIDDN------TIGIVGIAGTTELGQIDDIEELSK--------------------IALENGI----- 184 (373)
T ss_pred CCCCCcCHHHHHHHHhhC------cEEEEEECCCCCCCccCCHHHHHH--------------------HHHHcCC-----
Confidence 889999999999999764 345566668999999999999999 9999999
Q ss_pred chhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--
Q psy11047 411 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-- 488 (943)
Q Consensus 411 ~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-- 488 (943)
|+|||+||+++ .+ +.. + .|. -.+.... ....+|++++++|||++
T Consensus 185 --~livD~a~~~~-~~--~~~------------------------~-~~~-~~~~~d~---~~~~~d~~~~s~~K~~~~~ 230 (373)
T TIGR03812 185 --YLHVDAAFGGF-VI--PFL------------------------K-KGY-NPPPFDF---SLPGVQSITIDPHKMGLSP 230 (373)
T ss_pred --eEEEEcCchhH-HH--HHH------------------------h-cCC-CCCCccc---cCCCCCEEEECccccCCCc
Confidence 99999999876 21 100 0 000 0001111 12357999999999875
Q ss_pred -------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy11047 489 -------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPA 560 (943)
Q Consensus 489 -------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~ 560 (943)
++++..+ +.+....+|+... ..+...|+|. ...+.+|..++.++..|+.+.+++
T Consensus 231 ~~~G~~~~~~~~~~-~~l~~~~~~~~~~--------~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~--------- 292 (373)
T TIGR03812 231 IPAGGILFRSKSYL-KYLSVDAPYLTVK--------KQATITGTRSGASAAATYAVIKYLGREGYRKIVAE--------- 292 (373)
T ss_pred CCceEEEEeCHHHH-hhhcccCcccCCC--------CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHH---------
Confidence 1222221 2222223343221 1233456775 456788999999998998888877
Q ss_pred ccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCCh
Q psy11047 561 FLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENI 640 (943)
Q Consensus 561 ~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~ 640 (943)
..++++++.+.|++. +++.+.++..++|+|++++
T Consensus 293 ------------------------------------------~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~--- 326 (373)
T TIGR03812 293 ------------------------------------------CMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDD--- 326 (373)
T ss_pred ------------------------------------------HHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCC---
Confidence 356788888888887 4555556788999999864
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
...+.++|.++|. +++.. .+..++|+++++++|++|++++++.|++
T Consensus 327 -~~~v~~~L~~~gi-~v~~~--~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 327 -PEEVRKKLRDRGW-YVSVT--RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -HHHHHHHHHHCCc-eeccC--CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 2478888888875 44432 2456899998899999999999999875
No 17
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.95 E-value=1e-25 Score=251.44 Aligned_cols=347 Identities=16% Similarity=0.071 Sum_probs=253.8
Q ss_pred eeEEccCCCChHHHHHHHHHHH----HhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHH
Q psy11047 194 MHAYFPALNSYPSLLGDMLSDA----INCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASE 269 (943)
Q Consensus 194 f~g~~~~~~s~~silgd~L~~a----lN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTe 269 (943)
|+.|--+.+..|.++..|+..+ .|++. .+..+-.+..+-.++++++|+++|.++. ..+|||||||
T Consensus 4 YlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~----------eIiFTSG~TE 72 (386)
T COG1104 4 YLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE----------EIIFTSGATE 72 (386)
T ss_pred cccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEecCCcH
Confidence 4555555555666665554432 36655 5666666777777899999999999874 7899999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HH--CCccEEEEecCCCCCcCHHHHHHHHH
Q psy11047 270 STLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LI--GLVNMRYIESDDKLSLRGDKLIEAIE 346 (943)
Q Consensus 270 ANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~L--G~~~v~~Vp~D~~grmD~daLe~aI~ 346 (943)
||++|+..+-..... + ..+-.|++|..+|.|+..++ ++ .+..|.++|+|.+|++|+++|+++|+
T Consensus 73 snNlaI~g~~~a~~~------~-------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~ 139 (386)
T COG1104 73 SNNLAIKGAALAYRN------A-------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR 139 (386)
T ss_pred HHHHHHHhhHHhhhc------c-------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC
Confidence 999999875332111 0 02236899999999999988 56 34489999999999999999999999
Q ss_pred HhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 347 RDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 347 ~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
.+ +.+|+..+.++++|.+.||++|++ +|+++|+ ++|+||+++.+ ..
T Consensus 140 ~~------T~LVSim~aNnE~G~IQpI~ei~~--------------------i~k~~~i-------~fHvDAvQa~G-ki 185 (386)
T COG1104 140 PD------TILVSIMHANNETGTIQPIAEIGE--------------------ICKERGI-------LFHVDAVQAVG-KI 185 (386)
T ss_pred CC------ceEEEEEecccCeeecccHHHHHH--------------------HHHHcCC-------eEEEehhhhcC-ce
Confidence 87 789999999999999999999999 9999999 99999999876 32
Q ss_pred ccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCcccc
Q psy11047 427 EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYL 506 (943)
Q Consensus 427 eLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL 506 (943)
|-+ .. . -.+|.+++++||+++.|.-+.|.-.-......+
T Consensus 186 --pi~-------------------------------~~-------~-~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~ 224 (386)
T COG1104 186 --PID-------------------------------LE-------E-LGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPL 224 (386)
T ss_pred --ecc-------------------------------cc-------c-cCcceEEeehhhccCCCceEEEEECCCCccCce
Confidence 211 11 1 138999999999999776655411000111111
Q ss_pred ccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 507 RHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 507 ~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
.+++ +.|.++|.. |.+..|+.|+++.++...+.+. . .+.+
T Consensus 225 i~GG----------gQE~g~RsG------Tenv~~Ivg~~~A~~~a~~~~~----------------~-----~~~~--- 264 (386)
T COG1104 225 IHGG----------GQERGLRSG------TENVPGIVGFGKAAEIAVEELE----------------E-----ENAR--- 264 (386)
T ss_pred eccC----------cCCCCCCCC------CccHHHHHHHHHHHHHHHHHHH----------------H-----HHHH---
Confidence 1111 224555554 6788899999999998654321 0 0000
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCC-CCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeec--
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGD-PRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-- 660 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~-p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-- 660 (943)
...|.++|.+.|++. |++.+...+ -.|+++|.+++.. .+.|+-.|...|. +++..
T Consensus 265 ----------------~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~--gE~ll~~L~~~gI-~vStGSA 325 (386)
T COG1104 265 ----------------LRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE--GESLLLALDLAGI-AVSTGSA 325 (386)
T ss_pred ----------------HHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc--HHHHHHhccccCe-EEecccc
Confidence 357888999998865 999998643 5899999999865 5888888988885 44321
Q ss_pred ----cc--------------CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 661 ----SL--------------RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 661 ----~~--------------~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
.+ .-++.+||+++.+||++||+++++.++++.+.+...
T Consensus 326 CsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 326 CSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred ccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 11 125799999999999999999999999998887653
No 18
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-23 Score=238.21 Aligned_cols=344 Identities=16% Similarity=0.102 Sum_probs=245.6
Q ss_pred hHHHHHHHHHHHH---hcc--CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHH-HHHHHHH
Q psy11047 204 YPSLLGDMLSDAI---NCL--GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASES-TLICLLA 277 (943)
Q Consensus 204 ~~silgd~L~~al---N~n--~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeA-NL~AL~a 277 (943)
.|..+.+.+..++ |.| ...+..+..++.++.++++.+++++|.++. ...+||+|.|+| |+.+...
T Consensus 34 ~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~---------~eIvft~~tT~aln~va~~l 104 (405)
T COG0520 34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS---------DEIVFTRGTTEALNLVARGL 104 (405)
T ss_pred CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEeCChhHHHHHHHHHh
Confidence 4555666666553 333 345566777888999999999999999852 378999999999 4444433
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCC
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~ 353 (943)
++. + .+| ..|++|+..|+|..-.. .-.+..++.+|++++|.++.+++++.|.+.
T Consensus 105 ~~~--~------~~g---------deIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~----- 162 (405)
T COG0520 105 GRS--L------KPG---------DEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK----- 162 (405)
T ss_pred hhh--h------cCC---------CEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCC-----
Confidence 332 1 122 35888999999965554 223448999999999999999999977765
Q ss_pred CcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccc
Q psy11047 354 IPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 433 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~ 433 (943)
+.+|+.++.++.+|.+.|+++|++ +|+++|. |+-||||++.. .. |.+
T Consensus 163 -Tklvais~vSn~tG~~~pv~~I~~--------------------la~~~ga-------~v~VDaaq~~~-h~--~id-- 209 (405)
T COG0520 163 -TKLVALSHVSNVTGTVNPVKEIAE--------------------LAHEHGA-------LVLVDAAQAAG-HL--PID-- 209 (405)
T ss_pred -ceEEEEECccccccccchHHHHHH--------------------HHHHcCC-------EEEEECccccC-cc--CCC--
Confidence 789999999999999999999999 9999999 99999999876 33 111
Q ss_pred cceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCcc-Ccchh---hhhcccCccccccC
Q psy11047 434 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVK-NSGAL---HRTFNVEPLYLRHE 509 (943)
Q Consensus 434 Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr-~~~~L---~~af~~~p~YL~~~ 509 (943)
++. -.+|.+.+++|||++-+ .-+.| .+.+....++...+
T Consensus 210 ------------------------------------v~~-l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg 252 (405)
T COG0520 210 ------------------------------------VQE-LGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGG 252 (405)
T ss_pred ------------------------------------chh-cCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCC
Confidence 111 26899999999988722 11111 01111123344333
Q ss_pred CCCccccc-Ccccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccccccc
Q psy11047 510 NSGLAIDY-MHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 587 (943)
Q Consensus 510 ~~g~~~d~-~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~ 587 (943)
+.....+. ...++ +..+||.+. +.+..|.-|+.+.++.+.+ .|...|.++
T Consensus 253 ~~~~~~~~~~~~~~~~~p~rfe~g----Tpn~~~~i~l~aAl~~~~~---------------ig~~~i~~~--------- 304 (405)
T COG0520 253 GMIEYVSRDEGVTLAELPLRFEAG----TPNIAGAIGLAAALDYLLE---------------IGMEAIEAH--------- 304 (405)
T ss_pred CceeeecccccccccCcchhhccC----CchHHHHHhHHHHHHHHHH---------------HhHHHHHHH---------
Confidence 22111222 12333 456777764 7888888889999888643 344444443
Q ss_pred CCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEee--c--
Q psy11047 588 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP--A-- 660 (943)
Q Consensus 588 ~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~--t-- 660 (943)
..+|++++.+.|.++|+++++.++ ..++++|++++.+ +..+...|..+|...-+. +
T Consensus 305 ---------------e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~--~~dv~~~L~~~gI~vr~g~~ca~ 367 (405)
T COG0520 305 ---------------ERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIH--PHDVATLLDEKGIAVRAGHHCAQ 367 (405)
T ss_pred ---------------HHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCC--HHHHHHHHHhCCeEEEecccccc
Confidence 478999999999999999999875 6999999999874 688999999988322221 1
Q ss_pred ----ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 661 ----SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 661 ----~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+.-...+|++++.++|++||+++++.|+++.+
T Consensus 368 p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 368 PLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 011134599999999999999999999998754
No 19
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.91 E-value=1.9e-22 Score=248.78 Aligned_cols=378 Identities=13% Similarity=0.064 Sum_probs=252.9
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChh-----HHHHHHHHHHHHHHHh
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPA-----CTELEIITMNWLGKMI 244 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPa-----ateLE~~Vi~wLa~Ll 244 (943)
+-.++++.+.++-.....-..+..++|+ ......| .+++.....+.....+-..|. ..+++.+..+|+++++
T Consensus 479 sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p--~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~elt 555 (954)
T PRK05367 479 SETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNA--AAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEIT 555 (954)
T ss_pred CHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCH--HHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888765444332334455777 2222222 334444444444333444554 7899999999999999
Q ss_pred CCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCcc
Q psy11047 245 GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVN 324 (943)
Q Consensus 245 G~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~ 324 (943)
|++. ......||+++|+.+|+++|.+... +|- ..+.+|++|+.+|+|+.+++.+-+.+
T Consensus 556 G~d~-----------~sl~~~~ga~ge~agL~a~r~~~~~------~G~-----~~r~~vlis~~aH~snp~sa~~~G~~ 613 (954)
T PRK05367 556 GYDA-----------VSLQPNAGAQGEYAGLLAIRAYHES------RGE-----GHRDVCLIPSSAHGTNPASAVMAGMK 613 (954)
T ss_pred CCCC-----------EEECccHHHHHHHHHHHHHHHHhhc------cCC-----CCCCEEEEEchhhhhhHHHHHHCCCE
Confidence 9973 2344668889999999888864321 221 13567999999999999988543448
Q ss_pred EEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcC
Q psy11047 325 MRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF 404 (943)
Q Consensus 325 v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G 404 (943)
++.|++|.+|.+|+++|+++|+.+. ..+.+|++|.++|..+..||+++|++ +|+++|
T Consensus 614 vv~v~~d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~~--------------------i~h~~G 670 (954)
T PRK05367 614 VVVVACDENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREICE--------------------IVHEHG 670 (954)
T ss_pred EEEECCCCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHHH--------------------HHHHcC
Confidence 9999999999999999999997631 23788999999998444599999999 999999
Q ss_pred CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCC
Q psy11047 405 PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPS 484 (943)
Q Consensus 405 l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpH 484 (943)
. |+|||||+.++ .+. +.+ +|-..||++++|+|
T Consensus 671 ~-------~v~VDgA~~~a-l~~----------------------------------l~~------pg~~GADi~~~s~H 702 (954)
T PRK05367 671 G-------QVYLDGANMNA-QVG----------------------------------LAR------PGDIGADVSHLNLH 702 (954)
T ss_pred C-------EEEEECcChhh-ccC----------------------------------CCC------hhhcCCCEEEecCc
Confidence 9 99999999655 220 111 12236899999999
Q ss_pred CccCccCcch-----hhhhcccCccccccCCCCcccccCccccCCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy11047 485 SLLRVKNSGA-----LHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF----RALKLWFVIRNFGIKGLQKHIREIFSG 555 (943)
Q Consensus 485 K~L~vr~~~~-----L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf----rALklW~tLr~~G~~Gl~~~I~~~l~~ 555 (943)
||++.+...- ....-..-.+||.....+...+....+...+.++ .+++.|+.++.+|.+|++++++.
T Consensus 703 K~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~---- 778 (954)
T PRK05367 703 KTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEV---- 778 (954)
T ss_pred ccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----
Confidence 9988443211 0000012234544321110011111122223333 45679999999999999999998
Q ss_pred CCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec--C--CCccEE
Q psy11047 556 LALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA--A--RHLGMV 631 (943)
Q Consensus 556 ~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~--~--~~l~iV 631 (943)
.+.+|+++++.|.+. ++++. + +..+-+
T Consensus 779 -----------------------------------------------~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~ 809 (954)
T PRK05367 779 -----------------------------------------------AILNANYIAKRLKDH--YPVLYTGANGRVAHEC 809 (954)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHhh--cCccccCCCCCcccce
Confidence 356788888888664 44432 2 223344
Q ss_pred EEEecCC----ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 632 VIRLLGE----NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 632 ~Fr~~g~----n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+|++... +..+..+.++|...|....+ ..+...+.+|+...-.++++|||+++++|+.+..++.+
T Consensus 810 i~~~~~~~~~~g~~~~di~krL~d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 810 ILDLRPLKESTGITVDDIAKRLIDYGFHAPT-MSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred EEEeecccccCCCCHHHHHHHHHHCCCeEee-cCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555321 12368899999998875443 23445678999888899999999999999999888766
No 20
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.91 E-value=4.8e-22 Score=242.48 Aligned_cols=374 Identities=11% Similarity=0.052 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCC--ChHHHHHHHHHHHHhccCccccCChh-----HHHHHHHHHHHHHH
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALN--SYPSLLGDMLSDAINCLGFTWASSPA-----CTELEIITMNWLGK 242 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~--s~~silgd~L~~alN~n~~~~~~SPa-----ateLE~~Vi~wLa~ 242 (943)
+--++++.+.++-..... ..+ +|.+.+. .+...+.+++....+.....+...|. ..+++.+...||++
T Consensus 467 sE~e~~r~~~~L~~kn~~-~~~----~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~e 541 (939)
T TIGR00461 467 SETEMLRYLHRLESKDLA-LNN----SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCS 541 (939)
T ss_pred CHHHHHHHHHHHHhcCCC-ccc----cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHH
Confidence 556777777665332211 112 3343332 24456778887777776666667776 88999999999999
Q ss_pred HhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCC
Q psy11047 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGL 322 (943)
Q Consensus 243 LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~ 322 (943)
+.|++. .++..+||+++++.+|+++|.+... .| -..+.+|++|+.+|.+..+++.+-+
T Consensus 542 ltGmd~-----------~Sl~p~aGA~gE~agL~aiR~y~~~------rg-----e~~R~~vlip~saHgtnPasa~~~G 599 (939)
T TIGR00461 542 ITGFDA-----------ISLQPNSGAQGEYAGLRVIRSYHES------RG-----ENHRNICLIPVSAHGTNPASAAMAG 599 (939)
T ss_pred HHCCCC-----------cccCCchHHHHHHHHHHHHHHHHHh------cC-----CCCCCEEEEEccccCcCHHHHHHCC
Confidence 999984 5788999999999999999875311 11 0145689999999999988885434
Q ss_pred ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-HHHhhhhccccccccccccccCchHHHHH
Q psy11047 323 VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-YCCLGTAMIVKGLGFYKMKLQTNFPNFIL 401 (943)
Q Consensus 323 ~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-L~eIa~~~~~~d~~~~~i~L~RrfR~iar 401 (943)
.+++.|++|++|.+|+++|++.|++ .+..+.+|++|.++| +|.++| +++|++ +|+
T Consensus 600 ~~Vv~V~~d~~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~--------------------iah 655 (939)
T TIGR00461 600 MQVVPVNCDQDGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACD--------------------IVH 655 (939)
T ss_pred CEEEEeccCCCCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-CceecccHHHHHH--------------------HHH
Confidence 5999999999999999999999986 233488999999999 699977 999999 999
Q ss_pred HcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEE
Q psy11047 402 SYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTI 481 (943)
Q Consensus 402 ~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSIti 481 (943)
++|. |+|||||+..+... ...+ |-..||.+.+
T Consensus 656 ~~G~-------~v~VDgAq~~al~~-----------------------------------l~~P------g~~GaDi~~~ 687 (939)
T TIGR00461 656 SFGG-------QVYLDGANMNAQVG-----------------------------------LTSP------GDLGADVCHL 687 (939)
T ss_pred HcCC-------EEEEEecChhhCCC-----------------------------------CCCc------cccCCCEEEe
Confidence 9999 99999998654111 1111 3347999999
Q ss_pred cCCCccCccCcch--hhhhcc---cCccccccCCCCccccc----CccccCCCCCcch----HHHHHHHHHHHHHHHHHH
Q psy11047 482 VPSSLLRVKNSGA--LHRTFN---VEPLYLRHENSGLAIDY----MHWQIPLSKRFRA----LKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 482 DpHK~L~vr~~~~--L~~af~---~~p~YL~~~~~g~~~d~----~~~tie~SRrfrA----LklW~tLr~~G~~Gl~~~ 548 (943)
|+||+++.+...- -...+. .-.+|+.....+...+. .+.+...++.+++ ++.|+.|+.+|.+|+++.
T Consensus 688 s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~ 767 (939)
T TIGR00461 688 NLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKA 767 (939)
T ss_pred cCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHH
Confidence 9999887222110 000000 01123322111110010 1223344455665 899999999999999999
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC--
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR-- 626 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~-- 626 (943)
.+. .+.+|.|+++.|.+ +++++.+.
T Consensus 768 a~~---------------------------------------------------ailnAnYl~~rL~~--~~~~l~~~~~ 794 (939)
T TIGR00461 768 SVV---------------------------------------------------AILNANYMATRLKD--HYPILFVGTL 794 (939)
T ss_pred HHH---------------------------------------------------HHHHHHHHHHHhhc--cCcccccCCC
Confidence 988 35678888888876 56887754
Q ss_pred --CccEEEEEecCC----ChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 627 --HLGMVVIRLLGE----NILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 627 --~l~iV~Fr~~g~----n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
..+-++|++.+. +..+..+.++|...|....+.+ ...+...+|.. -.++.+|||++++++.++.+++.+
T Consensus 795 ~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepT--E~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 795 KHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPT--ESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred CceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEee--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344488888742 2447899999999997544422 22343344442 277899999999999999888776
No 21
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.89 E-value=2.4e-20 Score=216.47 Aligned_cols=380 Identities=13% Similarity=0.090 Sum_probs=246.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEc-cCCCChHHHHHHHHHHHHhccCccc---cCChhHHHHHHHHHH
Q psy11047 163 SAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYF-PALNSYPSLLGDMLSDAINCLGFTW---ASSPACTELEIITMN 238 (943)
Q Consensus 163 ~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~-~~~~s~~silgd~L~~alN~n~~~~---~~SPaateLE~~Vi~ 238 (943)
.+|+ .+-.++++.+.++-..... ..+ .|.|.- +....+|.+...++......+-..| ..+....++..++.+
T Consensus 45 ~~~~--~se~~~~~~~~~l~~~n~~-~~~-~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~ 120 (481)
T PRK04366 45 ELPE--VSELEVVRHYTRLSQKNYG-VDT-GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQE 120 (481)
T ss_pred CCCC--CCHHHHHHHHHHHHhcCCC-CCc-ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHH
Confidence 4565 7888999998876443322 122 455443 2223455555555544111233445 245567788899999
Q ss_pred HHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH
Q psy11047 239 WLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG 318 (943)
Q Consensus 239 wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa 318 (943)
|+++++|++. ..++.++|+.+++.++.++|..... +|. ..+..|++++..|.+..+++
T Consensus 121 ~la~l~G~~~-----------~~l~~~~GA~a~~~~l~~~r~~~~~------~Gd-----~~~~~Vlv~~~~hp~~~~~~ 178 (481)
T PRK04366 121 WLKEITGMDA-----------VTLQPAAGAHGELTGLLMIRAYHEA------RGD-----TKRTEVIVPDSAHGTNPASA 178 (481)
T ss_pred HHHHHhCCCc-----------eEEEeCcHHHHHHHHHHHHHHHhhc------cCc-----CCCCEEEEcCCccHhHHHHH
Confidence 9999999973 3566788888888887766643221 221 02345888999999999888
Q ss_pred HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhccccccccccccccCchH
Q psy11047 319 LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGFYKMKLQTNFP 397 (943)
Q Consensus 319 ~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~~~i~L~RrfR 397 (943)
.+.+.+++.++++.+|.+|+++|+++|..+ +.+|+.+..+ .+|.+ +|+++|++
T Consensus 179 ~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~------t~~V~v~~Pn-~tG~~~~dl~eI~~------------------- 232 (481)
T PRK04366 179 AMAGFKVVEIPSNEDGLVDLEALKAAVGED------TAALMLTNPN-TLGLFERNILEIAE------------------- 232 (481)
T ss_pred HHcCCEEEEeecCCCCCcCHHHHHhhcccC------CeEEEEeCCC-CccccchHHHHHHH-------------------
Confidence 655558999999888999999999999764 5567777766 78888 68999999
Q ss_pred HHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCee
Q psy11047 398 NFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQ 477 (943)
Q Consensus 398 ~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~AD 477 (943)
+|+++|. |+|||+|+..+ .+ | ..+. |-..||
T Consensus 233 -~a~~~ga-------l~iVD~a~~~~-~~--------g--------------------------~~~~------~~~GaD 263 (481)
T PRK04366 233 -IVHEAGG-------LLYYDGANLNA-IL--------G--------------------------KARP------GDMGFD 263 (481)
T ss_pred -HHHHcCC-------EEEEEecChhh-hc--------c--------------------------cCCc------cccCCC
Confidence 9999999 99999998544 11 0 0111 123689
Q ss_pred EEEEcCCCccCccCcc------h------hhhhcccCccccccCCCCccccc-CccccCCCCCcc-----hHHHHHHHHH
Q psy11047 478 NFTIVPSSLLRVKNSG------A------LHRTFNVEPLYLRHENSGLAIDY-MHWQIPLSKRFR-----ALKLWFVIRN 539 (943)
Q Consensus 478 SItiDpHK~L~vr~~~------~------L~~af~~~p~YL~~~~~g~~~d~-~~~tie~SRrfr-----ALklW~tLr~ 539 (943)
++++++||||+.+... . +.+.+ .+.++...+.+...++ +...+...|.+. ++++|..++.
T Consensus 264 ~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l--p~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~ 341 (481)
T PRK04366 264 VVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL--PVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS 341 (481)
T ss_pred EEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC--CCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH
Confidence 9999999998733211 1 11111 1111111111111111 111222233333 3799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCC
Q psy11047 540 FGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 619 (943)
Q Consensus 540 ~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~ 619 (943)
+|.+|+++..++ .+++|++|++.|+++
T Consensus 342 ~G~~Gl~~~a~~---------------------------------------------------~~~~a~~l~~~L~~~-- 368 (481)
T PRK04366 342 LGAEGLREVSED---------------------------------------------------AVLNANYLKARLKDI-- 368 (481)
T ss_pred HHHHHHHHHHHH---------------------------------------------------HHHHHHHHHHHhHhh--
Confidence 999999998887 356788888888876
Q ss_pred eEEecC-CCccEEEEEecC--C-ChHHHHHHHHHhccCcEEEee-cccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 620 FEIPAA-RHLGMVVIRLLG--E-NILTEKLLKRLNSKGRLHCVP-ASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 620 ~eIl~~-~~l~iV~Fr~~g--~-n~l~~~Ll~~L~~~G~~~~s~-t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++..+ +..+.+.|.... . +..+..+.++|.++|+..... ........+|++++..+|++|||+++++|+++.++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~ 448 (481)
T PRK04366 369 YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEE 448 (481)
T ss_pred CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHH
Confidence 444432 333444444321 0 113678999999998643211 00112458999999999999999999999999888
Q ss_pred HHHH
Q psy11047 695 ILAE 698 (943)
Q Consensus 695 ll~~ 698 (943)
+.++
T Consensus 449 ~~~~ 452 (481)
T PRK04366 449 AKEN 452 (481)
T ss_pred HHhC
Confidence 7765
No 22
>PLN02651 cysteine desulfurase
Probab=99.87 E-value=3.1e-20 Score=206.69 Aligned_cols=298 Identities=15% Similarity=0.089 Sum_probs=199.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.++...++..++++.+++++|.+.+ ..+||+|||++++.++..+..... . ++..|
T Consensus 37 ~~~~~~~~~~~~r~~la~~~g~~~~----------~v~~t~~~t~a~~~~l~~~~~~~~------~---------~g~~v 91 (364)
T PLN02651 37 YGWESEDAVEKARAQVAALIGADPK----------EIIFTSGATESNNLAIKGVMHFYK------D---------KKKHV 91 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCCHHHHHHHHHHHHHHhcc------C---------CCCEE
Confidence 3455667777899999999998653 689999999999999877643211 1 12357
Q ss_pred EecCCCchHHHHHH-HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 305 YCSDQAHSSVEKAG-LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+++..+|.|+.+++ .+ .+.+++.|+++.++.+|+++|+++|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 92 l~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------t~lv~v~~~~n~tG~~~~l~~I~~--- 162 (364)
T PLN02651 92 ITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPD------TALVSVMAVNNEIGVIQPVEEIGE--- 162 (364)
T ss_pred EEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCC------cEEEEEECCCCCceecccHHHHHH---
Confidence 88999999987766 22 2357889999888999999999999754 668888999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|+++|+ |+||||+++.+ .+ |
T Consensus 163 -----------------~~~~~g~-------~~~vD~a~~~g-~~--~-------------------------------- 183 (364)
T PLN02651 163 -----------------LCREKKV-------LFHTDAAQAVG-KI--P-------------------------------- 183 (364)
T ss_pred -----------------HHHHcCC-------EEEEEcchhhC-Cc--c--------------------------------
Confidence 9999999 99999999876 32 1
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hh-hc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HR-TF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~-af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tL 537 (943)
.. +..+ .+|.+++++|||++.+..+.+ .+ .. ...|.+.+ | +.+ +++++ .+.
T Consensus 184 -~~-----~~~~-~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g----~--------~~~--~~~~~----GT~ 238 (364)
T PLN02651 184 -VD-----VDDL-GVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSG----G--------GQE--RGRRS----GTE 238 (364)
T ss_pred -cC-----cccC-CCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccC----C--------Ccc--CCccC----CCc
Confidence 11 1112 479999999999763222222 00 00 11121111 0 001 12221 144
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC-
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG- 616 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~- 616 (943)
...+..|+.+.++.+.+ +.+.++++ ..+|++++.+.|.+
T Consensus 239 ~~~~~~~l~~al~~~~~----------------~~~~i~~~------------------------~~~l~~~l~~~l~~~ 278 (364)
T PLN02651 239 NTPLVVGLGAACELAMK----------------EMDYDEKH------------------------MKALRERLLNGLRAK 278 (364)
T ss_pred cHHHHHHHHHHHHHHHH----------------hHHHHHHH------------------------HHHHHHHHHHHHHhh
Confidence 45555566666665321 11222211 57789999998875
Q ss_pred CCCeEEecC--C---CccEEEEEecCCChHHHHHHHHHhc---cCcEEEeecc------c---C-----CCcEEEEeecC
Q psy11047 617 DPRFEIPAA--R---HLGMVVIRLLGENILTEKLLKRLNS---KGRLHCVPAS------L---R-----IQGLGRAQNFT 674 (943)
Q Consensus 617 ~p~~eIl~~--~---~l~iV~Fr~~g~n~l~~~Ll~~L~~---~G~~~~s~t~------~---~-----g~~~lR~v~~~ 674 (943)
.|+++++.+ + ..++++|.+++.+ .+.+.++|.+ +...+|++.. + . ..+++|+++++
T Consensus 279 ~~~~~i~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~L~~i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~ 356 (364)
T PLN02651 279 LGGVRVNGPRDPEKRYPGTLNLSFAYVE--GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGR 356 (364)
T ss_pred CCCEEEECCCCcccCcCCEEEEEeCCCC--HHHHHHHhCCEEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCC
Confidence 789999985 2 2569999998754 4667777743 1111222110 1 1 24799999999
Q ss_pred CCCHHHHH
Q psy11047 675 RTTNDDIT 682 (943)
Q Consensus 675 ~tt~edId 682 (943)
+||++|||
T Consensus 357 ~~t~~did 364 (364)
T PLN02651 357 FTTEEEVD 364 (364)
T ss_pred CCCHHHcC
Confidence 99999985
No 23
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.87 E-value=8.8e-20 Score=202.22 Aligned_cols=316 Identities=12% Similarity=0.049 Sum_probs=212.4
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
...+..++....+..++++++++++|.++. ...++|+|+|+++..++.+.... ..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------~~v~~~~g~t~a~~~~~~~l~~~-------~~~-------- 87 (373)
T cd06453 32 RGVHELSARATDAYEAAREKVARFINAPSP---------DEIIFTRNTTEAINLVAYGLGRA-------NKP-------- 87 (373)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEeCCHHHHHHHHHHHhhhc-------CCC--------
Confidence 345566677788888899999999998732 25789999999987776653210 001
Q ss_pred CceEEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHH
Q psy11047 300 SRLVAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCC 375 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~e 375 (943)
...|++++.+|++...+ +...+.+++.|+.+.++.+|++++++.|.++ +.+|+.+..++.+|.++|+++
T Consensus 88 -g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~ 160 (373)
T cd06453 88 -GDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTER------TKLVAVTHVSNVLGTINPVKE 160 (373)
T ss_pred -CCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCC------ceEEEEeCcccccCCcCCHHH
Confidence 23477899999996443 3222348999999989999999999999753 678888999999999999999
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
|.+ +|+++|+ |+|+|+|++.. .+ +
T Consensus 161 i~~--------------------~~~~~~~-------~li~D~a~~~~-~~--~-------------------------- 184 (373)
T cd06453 161 IGE--------------------IAHEAGV-------PVLVDGAQSAG-HM--P-------------------------- 184 (373)
T ss_pred HHH--------------------HHHHcCC-------EEEEEhhhhcC-ce--e--------------------------
Confidence 999 9999999 99999998755 22 1
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--h-hcccCccccccCCCCccc--ccCccc-----cC-C
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--R-TFNVEPLYLRHENSGLAI--DYMHWQ-----IP-L 524 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~-af~~~p~YL~~~~~g~~~--d~~~~t-----ie-~ 524 (943)
. .. .. ..+|++++++|||++....+.+. . ....-..|..+...-... +...|. ++ +
T Consensus 185 -------~-~~----~~-~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 251 (373)
T cd06453 185 -------V-DV----QD-LGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAG 251 (373)
T ss_pred -------e-ec----cc-cCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCC
Confidence 0 01 11 14799999999998842211110 0 000001122111000000 011111 11 1
Q ss_pred CCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHH
Q psy11047 525 SKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 603 (943)
Q Consensus 525 SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~ 603 (943)
+.. ...+.+|.+++.+...|+.+..++ .
T Consensus 252 t~~~~~~~al~~al~~l~~~g~~~~~~~---------------------------------------------------~ 280 (373)
T cd06453 252 TPNIAGAIGLGAAIDYLEKIGMEAIAAH---------------------------------------------------E 280 (373)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHHH---------------------------------------------------H
Confidence 222 234577777777777777665555 3
Q ss_pred HHHHHHHHHHHhCCCCeEEecCC--CccEEEEEecCCChHHHHHHHHHhccCcEEEeecc--------cCCCcEEEEeec
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAAR--HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS--------LRIQGLGRAQNF 673 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~--~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~--------~~g~~~lR~v~~ 673 (943)
.++++++.+.|.++|+++++.++ ..++++|++++.+ ..++.++|..+|...-.... ....+.+|++++
T Consensus 281 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~ 358 (373)
T cd06453 281 HELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIH--PHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFG 358 (373)
T ss_pred HHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcC--HHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEec
Confidence 56888999999999999998543 5789999987543 46788888887764321110 112568999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEI 688 (943)
Q Consensus 674 ~~tt~edId~ll~~I 688 (943)
+.+|.+|+++++++|
T Consensus 359 ~~~t~~di~~~~~~l 373 (373)
T cd06453 359 LYNTEEEIDALVEAL 373 (373)
T ss_pred CCCCHHHHHHHHhhC
Confidence 999999999998764
No 24
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.87 E-value=1.2e-19 Score=202.36 Aligned_cols=308 Identities=17% Similarity=0.100 Sum_probs=209.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++....+..++++++++++|.+.+ ..+||+|||+++..++.+..... + ++.+|+
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~----------~i~~t~~~t~a~~~al~~~~~~~--------~--------~~~~vv 90 (379)
T TIGR03402 37 GGEVGKAVEEAREQVAKLLGAEPD----------EIIFTSGGTESDNTAIKSALAAQ--------P--------EKRHII 90 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCcHHHHHHHHHHHHHHhc--------C--------CCCeEE
Confidence 455667777899999999998753 68999999999998887653210 1 123577
Q ss_pred ecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 306 CSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..+|.|+..++. + .+.+++.||++.+|.+|++++++.|+++ +.+|+.+..++.+|.+.|+++|++
T Consensus 91 ~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~I~~---- 160 (379)
T TIGR03402 91 TTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD------TALVSVMWANNETGTIFPIEEIGE---- 160 (379)
T ss_pred EcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC------cEEEEEEcccCCeeecccHHHHHH----
Confidence 88999999877652 2 3458899999888999999999998654 678888889999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|+ ++|+|++++.. .. |
T Consensus 161 ----------------l~~~~g~-------~vivD~~~~~g-~~--~--------------------------------- 181 (379)
T TIGR03402 161 ----------------IAKERGA-------LFHTDAVQAVG-KI--P--------------------------------- 181 (379)
T ss_pred ----------------HHHHcCC-------EEEEECccccc-cc--c---------------------------------
Confidence 9999999 99999998765 22 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~ 540 (943)
.+ +.. ..+|.+++++||+++...-..+ ...+...| ++. | . ..+ +++++ .+.+..
T Consensus 182 ~~-----~~~-~~~D~~~~s~~K~~gp~G~g~l~v~~~~~~~p-~~~----g------~-~~~--~~~~~----gt~~~~ 237 (379)
T TIGR03402 182 ID-----LKE-MNIDMLSLSGHKLHGPKGVGALYIRKGTRFRP-LLR----G------G-HQE--RGRRA----GTENVP 237 (379)
T ss_pred cC-----ccc-CCCCEEEEcHHHcCCCCceEEEEECCCCCCCC-ccc----C------C-ccC--CCcCC----CCccHH
Confidence 00 111 2579999999996663322211 00001111 111 0 0 001 11221 144555
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC-CCC
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG-DPR 619 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~-~p~ 619 (943)
|..++.+.++.+.+ +++.+.++ ..++++++.+.|++ +|+
T Consensus 238 ~~~~l~~al~~~~~----------------~~~~~~~~------------------------~~~l~~~l~~~l~~~~~~ 277 (379)
T TIGR03402 238 GIVGLGKAAELATE----------------HLEEENTR------------------------VRALRDRLEAGLLARIPD 277 (379)
T ss_pred HHHHHHHHHHHHHH----------------hHHHHHHH------------------------HHHHHHHHHHHHHhhCCC
Confidence 55666666665321 01111110 46788888888885 899
Q ss_pred eEEecCCC---ccEEEEEecCCChHHHHHHHHHhccCcEEEeec-----c--------------cCCCcEEEEeecCCCC
Q psy11047 620 FEIPAARH---LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-----S--------------LRIQGLGRAQNFTRTT 677 (943)
Q Consensus 620 ~eIl~~~~---l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-----~--------------~~g~~~lR~v~~~~tt 677 (943)
+++..++. .++++|.+.+.+ .+.+.+.|.++|...-+.+ . ....+.+|++++++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t 355 (379)
T TIGR03402 278 ARLNGDPTKRLPNTVNISFEYIE--GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNT 355 (379)
T ss_pred EEEeCCCccCCCCEEEEEecCCC--HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCC
Confidence 99987542 468999887654 4678888877775432211 0 0114689999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATE 694 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~ 694 (943)
++||+++++.|+++.+.
T Consensus 356 ~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 356 EEDIDYVLEVLPPIIAR 372 (379)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997765
No 25
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.86 E-value=3e-19 Score=200.54 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=206.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..++...+.-.++++.+++++|.++. ...+||+|+|+++..++.+...... . +..
T Consensus 54 ~~~~~~~~~~~~~~r~~ia~~~~~~~~---------~~v~~~~g~t~~l~~~~~~~~~~~~------~---------~g~ 109 (403)
T TIGR01979 54 HTLSVRATEAYEAVREKVAKFINAASD---------EEIVFTRGTTESINLVAYSWGDSNL------K---------AGD 109 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcCCC---------CeEEEeCCHHHHHHHHHHHhhhhcC------C---------CCC
Confidence 334455555666788999999999732 2689999999997655543211100 1 223
Q ss_pred EEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|++++.+|.|.. +++...+.+++.++++++|.+|++++++.+.++ +.+|+.+..++.+|.+.|+++|++
T Consensus 110 ~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~------~~lv~~~~~~~~tG~~~~~~~i~~ 183 (403)
T TIGR01979 110 EIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEK------TKLVAITHVSNVLGTVNPVEEIAK 183 (403)
T ss_pred EEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccC------CeEEEEEcccccccccCCHHHHHH
Confidence 5888999998854 344333458899999989999999999998654 778889999999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ |+|+|+|++.. .. +
T Consensus 184 --------------------~~~~~~~-------~~ivD~a~~~g-~~--~----------------------------- 204 (403)
T TIGR01979 184 --------------------LAHQVGA-------KVLVDGAQAVP-HM--P----------------------------- 204 (403)
T ss_pred --------------------HHHHcCC-------EEEEEchhhcC-cc--c-----------------------------
Confidence 9999999 99999999765 21 1
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcccccCc-------cccC-CCCC
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLAIDYMH-------WQIP-LSKR 527 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~~d~~~-------~tie-~SRr 527 (943)
. . +.. ..+|.+++++||+++...-+.+. +....-.+|..+.......+... +.++ ++..
T Consensus 205 ----~-~----~~~-~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 274 (403)
T TIGR01979 205 ----V-D----VQA-LDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPN 274 (403)
T ss_pred ----c-C----ccc-cCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCcc
Confidence 0 0 111 14799999999988732211110 00010112222111000000000 1111 1111
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 528 F-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 528 f-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
. ..+.++.+++.+...|+.+..++ ..++
T Consensus 275 ~~~~~al~~al~~~~~~g~~~~~~~---------------------------------------------------~~~l 303 (403)
T TIGR01979 275 IAGVIGLGAAIDYLEAIGLENIEAH---------------------------------------------------EHEL 303 (403)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHH---------------------------------------------------HHHH
Confidence 1 12334444444433344333333 3567
Q ss_pred HHHHHHHHhCCCCeEEecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeec---------ccCCCcEEEEeec
Q psy11047 607 AQKFEALVLGDPRFEIPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA---------SLRIQGLGRAQNF 673 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t---------~~~g~~~lR~v~~ 673 (943)
++++.+.|+++++++++.+. ..++++|++.+.+ ..++.+.|.++|.. +... .....+++|++++
T Consensus 304 ~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~L~~~gI~-v~~g~~~~~~~~~~~~~~~~iRiS~~ 380 (403)
T TIGR01979 304 TAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVH--PHDVGTILDEEGIA-VRSGHHCAQPLMRRFGVPATCRASFY 380 (403)
T ss_pred HHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcC--HHHHHHHHhhCCEE-EcchhhhhHHHHHHhCCCCEEEEEec
Confidence 88899999999999998754 3789999987643 45777888888753 3311 1122568999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 674 ~~tt~edId~ll~~I~~~~~~l 695 (943)
+++|++||+++++.|+++.+.+
T Consensus 381 ~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 381 IYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876543
No 26
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.86 E-value=2e-19 Score=206.74 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=180.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCC--------CCc---------eeEEccC---CCChHHHHHHHHHHHHhccCc
Q psy11047 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQ--------SPY---------MHAYFPA---LNSYPSLLGDMLSDAINCLGF 221 (943)
Q Consensus 162 ~~lPe~G~~~e~iL~~l~~~I~~~~~~~~--------sPr---------f~g~~~~---~~s~~silgd~L~~alN~n~~ 221 (943)
..+|++|.+.+.|...|.++-.-...+|. -.| ++++.++ ... ++. ..-
T Consensus 28 ~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~-------l~~-----~q~ 95 (444)
T TIGR03531 28 RKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGD-------LVA-----PQP 95 (444)
T ss_pred CcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccc-------ccc-----cCc
Confidence 47899999999999888876444555565 112 2222222 111 100 000
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH-HHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS-ESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT-eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
--..|+....++.....|+++++|.+.. ..+++++||| +++.++|.++|.+. + .+
T Consensus 96 ka~gss~~~~l~~~~e~~~~~~~G~~~~---------~~a~~v~~~Tg~al~laL~alr~~~--------~-------~g 151 (444)
T TIGR03531 96 KAAGSSLLYKLTNKLVKDFLKLLGLRSI---------KSAFVVPLATGMSLSLCLSALRHKR--------P-------KA 151 (444)
T ss_pred cccCccHHHHHHHHHHHHHHHHcCCCCC---------CEEEEECCHHHHHHHHHHHHcCCcC--------C-------CC
Confidence 1123566788999999999999999743 3578999999 79999988765310 0 13
Q ss_pred ceEEEecCCCchHHHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 301 RLVAYCSDQAHSSVEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
+.||+.+ .+|+|+.||+.+.+...+.|++ ++++.||+++|+++|++... ..+++|+.|.+|+..|..||+++|+
T Consensus 152 d~VI~p~-~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~--kai~~Vv~Tp~t~~~g~~ddL~eIa 228 (444)
T TIGR03531 152 KYVIWPR-IDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGP--DNILCVLSTTSCFAPRSPDDIEEIA 228 (444)
T ss_pred CEEEEEC-cChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccC--CCEEEEEEcCCcCCCcchhCHHHHH
Confidence 4556554 6799999999654447777774 46789999999999985321 2356677777777778999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+ +|++||+ |+|+|+|||....
T Consensus 229 ~--------------------la~k~gI-------~lIvDaAyg~~~~-------------------------------- 249 (444)
T TIGR03531 229 K--------------------ICANYDI-------PHIVNNAYGLQSN-------------------------------- 249 (444)
T ss_pred H--------------------HHHHcCC-------EEEEECcCcCcCh--------------------------------
Confidence 9 9999999 9999999986411
Q ss_pred cCcccccchhhhh-cCC--CCeeEEEEcCCCccCcc-CcchhhhhcccCccccccCCCCcccccCccccCCC-CCcchHH
Q psy11047 458 KGRLHCVPASLRI-QGL--GRAQNFTIVPSSLLRVK-NSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLS-KRFRALK 532 (943)
Q Consensus 458 ~G~~~~p~~r~~l-~Gi--e~ADSItiDpHK~L~vr-~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~S-RrfrALk 532 (943)
.+.+.+ +|. .++|++++|+||++.+. +...+. ..++.++..-. .. | .+. ....+++
T Consensus 250 -------~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~---~~d~el~~~i~----~~---y--~g~~~~s~~~~ 310 (444)
T TIGR03531 250 -------KYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIY---SFDENFIQEIS----KS---Y--PGRASASPSLD 310 (444)
T ss_pred -------hhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEE---ECCHHHHHHHH----Hh---c--cCCCCChHHHH
Confidence 111122 232 25899999999999842 222210 01111111000 00 0 011 1234789
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIRE 551 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~ 551 (943)
+|++++.+|.+||++++++
T Consensus 311 ~~~~ll~~G~~g~~~li~~ 329 (444)
T TIGR03531 311 VLITLLSLGSKGYLELLKE 329 (444)
T ss_pred HHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999998
No 27
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.86 E-value=2.4e-19 Score=204.93 Aligned_cols=373 Identities=13% Similarity=0.036 Sum_probs=235.6
Q ss_pred ChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHH------HHHHHHHhccCccccC
Q psy11047 152 KPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLG------DMLSDAINCLGFTWAS 225 (943)
Q Consensus 152 ~p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silg------d~L~~alN~n~~~~~~ 225 (943)
=|..++...+..+|+++ +.+++++++.+..........|+.++|.-..+...|..+- ++++. +|++.. +.
T Consensus 31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~ 106 (447)
T PRK00451 31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EI 106 (447)
T ss_pred CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--cc
Confidence 36778777777899876 9999999999876544443347888774222222232222 33333 444333 33
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++...+.+.+...|+++++|++.. .+.+|+|||+++ .+++.|+.. . + +..|+
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~----------~v~~~~g~t~~~-~~~~~a~~~--~------~---------g~~Vl 158 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVA----------NASMYDGATALA-EAALMAVRI--T------K---------RKKVL 158 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcc----------eEEecCcHHHHH-HHHHHHHHh--c------C---------CCEEE
Confidence 555677777788899999999754 588999999854 455545421 0 1 22478
Q ss_pred ecCCCchHHHHHHH-H---CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 306 CSDQAHSSVEKAGL-I---GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L---G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+++.+|.+..+++. + .+.+++.++++++ ++|+++|+++|+++ +.+|+.+.. +.+|.++|+++|++
T Consensus 159 v~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~------t~~v~l~~p-n~tG~v~~l~~I~~--- 227 (447)
T PRK00451 159 VSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDD------TAAVVVQYP-NFFGVIEDLEEIAE--- 227 (447)
T ss_pred EeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCC------eEEEEEECC-CCCCeeCCHHHHHH---
Confidence 89999999998873 2 2358999999877 99999999999754 567777765 78999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhH--HhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF--EALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHV--DAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|+++|+ |++| |+...|. +
T Consensus 228 -----------------~a~~~~~-------~~iv~~d~~~~g~--~--------------------------------- 248 (447)
T PRK00451 228 -----------------IAHAGGA-------LFIVGVDPVSLGL--L--------------------------------- 248 (447)
T ss_pred -----------------HHHHCCC-------EEEEEcChHHhcc--C---------------------------------
Confidence 9999999 9988 6443222 1
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccC------ccC-----cchhhhhcccCccccccC--CCCc-cc--c-------
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLR------VKN-----SGALHRTFNVEPLYLRHE--NSGL-AI--D------- 516 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~------vr~-----~~~L~~af~~~p~YL~~~--~~g~-~~--d------- 516 (943)
..+ +-..+|.++.++|||.. .+- +..+.+.+ .+..+... ..+. .+ +
T Consensus 249 --~~~-------~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (447)
T PRK00451 249 --KPP-------GEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQM--PGRLVGETVDADGKRGFVLTLQAREQH 317 (447)
T ss_pred --CCc-------ccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhC--CCCEeeeecccCCCeeeEeeccccccc
Confidence 011 11367999999999721 110 00111111 01000000 0000 00 0
Q ss_pred --cCcccc-CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcc
Q psy11047 517 --YMHWQI-PLSKR-FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPN 592 (943)
Q Consensus 517 --~~~~ti-e~SRr-frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~ 592 (943)
....+. .+++. ..++..+..++.+|..|+++..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~----------------------------------------- 356 (447)
T PRK00451 318 IRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQ----------------------------------------- 356 (447)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHH-----------------------------------------
Confidence 000000 01111 122445555667777887776666
Q ss_pred cccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEE---EeecccCCCcEEE
Q psy11047 593 FILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH---CVPASLRIQGLGR 669 (943)
Q Consensus 593 ~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~---~s~t~~~g~~~lR 669 (943)
..++++++.+.|++++++++...+.++.+++++. .+ ..++.++|.++|.+- .++.......++|
T Consensus 357 ----------~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~-~~--~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~r 423 (447)
T PRK00451 357 ----------NHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLP-KP--AEEVNEALLEKGILGGYDLGRYYPELGNHLL 423 (447)
T ss_pred ----------HHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecC-CC--HHHHHHHHHhcCCCCCcccccccCCcCCEEE
Confidence 3567889999999999999874444555566653 22 467888888887541 1111001135899
Q ss_pred EeecCCCCHHHHHHHHHHHHHH
Q psy11047 670 AQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 670 ~v~~~~tt~edId~ll~~I~~~ 691 (943)
++++..+|++||+++++.|+++
T Consensus 424 vs~~~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 424 VCVTEKRTKEDIDALVAALGEV 445 (447)
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 28
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.86 E-value=4.3e-19 Score=199.38 Aligned_cols=356 Identities=13% Similarity=0.042 Sum_probs=223.5
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhcc-----CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCL-----GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n-----~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.+-..++.+..++ +.+..+++.. ...+..++...++-..+++.+++++|.++. ...+||+|+
T Consensus 18 iyld~a~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~~i~~t~g~ 87 (398)
T TIGR03392 18 VYLDSAATALKPQAVI-DATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA---------ENIVWTRGT 87 (398)
T ss_pred EEeeCccccCCCHHHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC---------CeEEEeCCh
Confidence 3455444444344443 4444444221 122333445566667799999999998532 258899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|+++..++.+.... .. .+ .-.|++++.+|+|.. ..+...+.+++.+|++.++.+|+++|++
T Consensus 88 t~~l~~~~~~~~~~---~~---~~---------gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~ 152 (398)
T TIGR03392 88 TESINLVAQSYARP---RL---QP---------GDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPE 152 (398)
T ss_pred HHHHHHHHHHhhhc---cC---CC---------CCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHH
Confidence 99987665542100 00 11 225788899998843 3333344588999998888999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.++ +.+|+.+..++.+|.+.|+++|++ +|+++|+ ++++|++++..
T Consensus 153 ~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~--------------------~~~~~~~-------~~ivD~a~~~~ 199 (398)
T TIGR03392 153 LLTPR------TRILALGQMSNVTGGCPDLARAIT--------------------LAHQYGA-------VVVVDGAQGVV 199 (398)
T ss_pred HhccC------ceEEEEECccccccccCCHHHHHH--------------------HHHHcCC-------EEEEEhhhhcC
Confidence 98654 668888899999999999999999 9999999 99999999754
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcc
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFN 500 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~ 500 (943)
.+ + .... .. .+|.+++++||+++...-+.+. +...
T Consensus 200 -~~--~----------------------------------~~~~----~~-~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 200 -HG--P----------------------------------PDVQ----AL-DIDFYAFSGHKLYGPTGIGVLYGKTELLE 237 (398)
T ss_pred -CC--C----------------------------------CChh----hc-CCCEEEEecccccCCCceEEEEEcHHHHh
Confidence 22 1 0111 11 4799999999977732222110 0011
Q ss_pred cCccccccCCCCcccccCcccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccc
Q psy11047 501 VEPLYLRHENSGLAIDYMHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579 (943)
Q Consensus 501 ~~p~YL~~~~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~ 579 (943)
.-+++..........++..+.. +..++|++. +....+..++.+.++.+.+ .|.+.++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~G----T~~~~~~~a~~~al~~l~~---------------~g~~~i~~~- 297 (398)
T TIGR03392 238 AMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAG----TPNIAGVIGLSAALEWLTD---------------IDIAAAEAW- 297 (398)
T ss_pred hCCCeecCCceEeeccccccccCCChhhccCC----CCCHHHHHHHHHHHHHHHH---------------hCHHHHHHH-
Confidence 1112221111000011111221 233444421 3444455555555554311 122222211
Q ss_pred ccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee
Q psy11047 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 580 ~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~ 659 (943)
..++++++.+.|.++|++++..++..++++|++++.+ .+.+.++|.++|. .+..
T Consensus 298 -----------------------~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~--~~~l~~~L~~~gI-~v~~ 351 (398)
T TIGR03392 298 -----------------------SVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVH--HSDLAALLAESGI-ALRA 351 (398)
T ss_pred -----------------------HHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcC--HHHHHHHHHhCCE-EEec
Confidence 4678999999999999999987778899999987654 4678888888775 3432
Q ss_pred cc---------cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 660 AS---------LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 660 t~---------~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.. +...+++|++.++++|.+||++++++|+++.+.
T Consensus 352 g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 352 GQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred CccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 11 122468999999999999999999999887654
No 29
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.85 E-value=5.1e-19 Score=199.67 Aligned_cols=355 Identities=11% Similarity=0.006 Sum_probs=225.6
Q ss_pred ceeEEccCCCChHHHHHHHHHHHH-----hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAI-----NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~al-----N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.+-.+++.+..++. .+...+ |+....+..++.+..+-..+++.+|+++|.++. ...+||+|+
T Consensus 25 iYld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---------~~v~~t~g~ 94 (406)
T PRK09295 25 AYLDSAASAQKPSQVID-AEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA---------EELVFVRGT 94 (406)
T ss_pred EEEeCcccccCCHHHHH-HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC---------CeEEEeCCH
Confidence 45555544444455543 333333 222233444566667677799999999997422 268999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|+++..++.+-....+ .+ .-.|++++.+|.|... .+...+.+++.++.+.++.+|+++|++
T Consensus 95 t~~l~~~~~~~~~~~~------~~---------gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 159 (406)
T PRK09295 95 TEGINLVANSWGNSNV------RA---------GDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPA 159 (406)
T ss_pred HHHHHHHHHHhhhhcC------CC---------cCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHH
Confidence 9997766543211000 11 2357888999987533 333334588899998899999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.++ +.+|+.+..++.+|.+.|+++|++ +|+++|+ ++++|++++..
T Consensus 160 ~i~~~------t~lv~l~~~~n~tG~~~~~~~i~~--------------------~~~~~~~-------~vivD~a~~~g 206 (406)
T PRK09295 160 LFDER------TRLLAITHVSNVLGTENPLAEMIA--------------------LAHQHGA-------KVLVDGAQAVM 206 (406)
T ss_pred hcCCC------cEEEEEecchhcccccCCHHHHHH--------------------HHHHcCC-------EEEEEcccccC
Confidence 98653 678889999999999999999999 9999999 99999998655
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcc
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFN 500 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~ 500 (943)
.. + .+ +.. ..+|.+++++||+++...-+.+. +...
T Consensus 207 -~~--~---------------------------------~~-----~~~-~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~ 244 (406)
T PRK09295 207 -HH--P---------------------------------VD-----VQA-LDCDFYVFSGHKLYGPTGIGILYVKEALLQ 244 (406)
T ss_pred -cc--c---------------------------------cC-----chh-cCCCEEEeehhhccCCCCcEEEEEchHhHh
Confidence 21 1 00 111 25799999999977732211110 0111
Q ss_pred cCccccccCCCCccccc-Ccccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcc
Q psy11047 501 VEPLYLRHENSGLAIDY-MHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKG 578 (943)
Q Consensus 501 ~~p~YL~~~~~g~~~d~-~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~ 578 (943)
.-+++..........+. ..+.+ +..+||++. +....+..++.+.++.+.+ .|.+.|+++
T Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~G----T~~~~~~~~l~~al~~~~~---------------~g~~~i~~~ 305 (406)
T PRK09295 245 EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAG----TPNTGGIIGLGAALDYVSA---------------LGLNNIAEY 305 (406)
T ss_pred hCCCcccCCceeeeeecCCccccCCchhhcCCC----CccHHHHHHHHHHHHHHHH---------------hCHHHHHHH
Confidence 11223222110000011 01111 233445432 4455556666666665321 233333322
Q ss_pred cccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEE
Q psy11047 579 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 657 (943)
Q Consensus 579 ~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~ 657 (943)
..+|++++.+.|.+++++++..+ ...++|+|.+++.+ .+.+.+.|.++|. ++
T Consensus 306 ------------------------~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~--~~~~~~~L~~~gI-~v 358 (406)
T PRK09295 306 ------------------------EQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH--AYDVGSFLDNYGI-AV 358 (406)
T ss_pred ------------------------HHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcC--HHHHHHHHHhCCe-EE
Confidence 45788999999999999999875 34789999987643 4677778877775 33
Q ss_pred eec---------ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 658 VPA---------SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 658 s~t---------~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
..- .....+++|+++++++|++||++++++|+++..
T Consensus 359 ~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 359 RTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred eccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 211 112246899999999999999999999998754
No 30
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.85 E-value=8e-19 Score=197.37 Aligned_cols=357 Identities=13% Similarity=0.034 Sum_probs=222.5
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhcc-----CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCL-----GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n-----~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.+-..++.+..++. .+..+++.. ...+..+....++-..+++.+++++|.++. ...+||+|+
T Consensus 21 ~yld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~~i~~~~~~ 90 (401)
T PRK10874 21 VYLDSAATALKPQAVIE-ATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA---------KNIVWTRGT 90 (401)
T ss_pred EEEeCCcccCCCHHHHH-HHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC---------CEEEEECCH
Confidence 35555555544445443 333343221 122233445566677899999999998422 368899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH----HHHHHHCCccEEEEecCCCCCcCHHHHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV----EKAGLIGLVNMRYIESDDKLSLRGDKLIE 343 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv----~KAa~LG~~~v~~Vp~D~~grmD~daLe~ 343 (943)
|+++..++.+... ..+ .+| -.|++++.+|+|. .+.+...+.+++.|+++.++.+|++++++
T Consensus 91 t~~i~~~~~~~~~---~~~---~~g---------d~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 155 (401)
T PRK10874 91 TESINLVAQSYAR---PRL---QPG---------DEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPE 155 (401)
T ss_pred HHHHHHHHHHhhh---ccC---CCc---------CEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHH
Confidence 9997665543210 000 122 3578889999874 33343334589999998889999999999
Q ss_pred HHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 344 AIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 344 aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++ +.+|+.+..++.+|.+.|+++|++ +|+++|+ ++++|++++..
T Consensus 156 ~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~--------------------l~~~~g~-------~~ivD~a~~~g 202 (401)
T PRK10874 156 LITPR------TRILALGQMSNVTGGCPDLARAIT--------------------LAHQAGM-------VVMVDGAQGAV 202 (401)
T ss_pred hcCcC------cEEEEEeCCcccccCcCCHHHHHH--------------------HHHHcCC-------EEEEECCcccc
Confidence 99654 678888999999999999999999 9999999 99999999754
Q ss_pred CccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcc
Q psy11047 424 PRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFN 500 (943)
Q Consensus 424 ~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~ 500 (943)
.+ + . . +..+ .+|.+++++||+++.+.-+.+. +...
T Consensus 203 -~~--~---------------------------------~-~----~~~~-~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 240 (401)
T PRK10874 203 -HF--P---------------------------------A-D----VQAL-DIDFYAFSGHKLYGPTGIGVLYGKSELLE 240 (401)
T ss_pred -cc--c---------------------------------C-C----chhc-CCCEEEEecccccCCCccEEEEEchHHHh
Confidence 22 1 0 0 1111 4799999999977733222210 0001
Q ss_pred cCccccccCCCCcccccCcccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccc
Q psy11047 501 VEPLYLRHENSGLAIDYMHWQI-PLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579 (943)
Q Consensus 501 ~~p~YL~~~~~g~~~d~~~~ti-e~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~ 579 (943)
.-.++..+.......++..+.. +..++|+.. +....+..++.+.++.+.+ .|...++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~G----t~~~~~~~al~~al~~l~~---------------~g~~~~~~~- 300 (401)
T PRK10874 241 AMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAG----TPNVAGVIGLSAALEWLAD---------------IDINQAESW- 300 (401)
T ss_pred cCCCeecCCcceEeeccCccCCCCChhhccCC----CcCHHHHHHHHHHHHHHHH---------------hCHHHHHHH-
Confidence 1112222111000001111111 122333321 3333444444444443211 112222111
Q ss_pred ccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEee
Q psy11047 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 580 ~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~ 659 (943)
..++++++.+.|+++|++++..++..++++|++.+.+ .+++.+.|.++|.+..+.
T Consensus 301 -----------------------~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~L~~~gI~v~~g 355 (401)
T PRK10874 301 -----------------------SRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVH--HSDLVTLLAEYGIALRAG 355 (401)
T ss_pred -----------------------HHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcC--HHHHHHHHHHCCcEEecc
Confidence 3568889999999999999988888899999987644 467888888888654332
Q ss_pred cc--------cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 660 AS--------LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 660 t~--------~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.. +...+++|+++++++|++||++++++|++++..
T Consensus 356 ~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 356 QHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred ccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 11 122478999999999999999999999987654
No 31
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.85 E-value=1.6e-19 Score=203.83 Aligned_cols=343 Identities=15% Similarity=0.105 Sum_probs=210.1
Q ss_pred ceeEEccCCCChHHHHHHHHHHHHhccCcc----ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAINCLGFT----WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS 268 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~alN~n~~~----~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT 268 (943)
-|+.+-.+.+.++.++..+...+.+..+.. +..+..+...-..+++.+++++|.+++ ..+||+|||
T Consensus 5 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----------~v~~~~g~t 74 (402)
T TIGR02006 5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR----------EIVFTSGAT 74 (402)
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCCHH
Confidence 455555555555555543333221111111 111222345566788999999998653 589999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHH
Q psy11047 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAI 345 (943)
Q Consensus 269 eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI 345 (943)
+++..++.+.+.... . +...|+++..+|.|+.+++. + .+.+++.|+++.++.+|+++|++.|
T Consensus 75 ~a~~~~l~~l~~~~~------~---------~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l 139 (402)
T TIGR02006 75 ESNNLAIKGIAHFYK------S---------KGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAI 139 (402)
T ss_pred HHHHHHHHHHHHhhc------C---------CCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhc
Confidence 999888765432110 1 12357888999999888762 2 2458899999999999999999988
Q ss_pred HHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCc
Q psy11047 346 ERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 425 (943)
Q Consensus 346 ~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~a 425 (943)
.++ +.+|+.+..++.+|.+.|+++|.+ +|+++|+ |+|||++++.. .
T Consensus 140 ~~~------~~lv~v~~~~n~tG~~~~~~~I~~--------------------l~~~~g~-------~livD~a~a~g-~ 185 (402)
T TIGR02006 140 RDD------TILVSIMHVNNEIGVIQDIAAIGE--------------------ICRERKV-------FFHVDAAQSVG-K 185 (402)
T ss_pred CCC------CEEEEEECCCcCceecccHHHHHH--------------------HHHHcCC-------EEEEEcchhcC-C
Confidence 653 578888999999999999999999 9999999 99999999765 3
Q ss_pred cccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hhhcccCc
Q psy11047 426 FEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVEP 503 (943)
Q Consensus 426 feLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~p 503 (943)
. | .. +.+ ..+|++++++||+++....+.+ .+......
T Consensus 186 ~--~---------------------------------~~-----~~~-~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~ 224 (402)
T TIGR02006 186 I--P---------------------------------IN-----VNE-LKVDLMSISGHKIYGPKGIGALYVRRKPRVRL 224 (402)
T ss_pred c--c---------------------------------cC-----ccc-cCCCEEEEehhhhcCCCceEEEEEccCCCCCC
Confidence 2 1 00 111 2589999999998773222221 00000000
Q ss_pred cccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhccccccc
Q psy11047 504 LYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 583 (943)
Q Consensus 504 ~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~ 583 (943)
.++..+ +. ..|++++. +....+..++.+.++.+.+ +++.+.++
T Consensus 225 ~~~~~g--~~----------~~~~~~~g----t~~~~~~~al~~al~~~~~----------------~~~~~~~~----- 267 (402)
T TIGR02006 225 EALIHG--GG----------HERGMRSG----TLPTHQIVGMGEAFRIAKE----------------EMAQDTAH----- 267 (402)
T ss_pred CceecC--CC----------ccCCccCC----CccHHHHHHHHHHHHHHHH----------------hHHHHHHH-----
Confidence 111110 00 01223221 2233333444444443211 01111111
Q ss_pred ccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC--Cc-c--EEEEEecCCChHHHHHHHHHhc---cCcE
Q psy11047 584 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR--HL-G--MVVIRLLGENILTEKLLKRLNS---KGRL 655 (943)
Q Consensus 584 i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~--~l-~--iV~Fr~~g~n~l~~~Ll~~L~~---~G~~ 655 (943)
..+|++++.+.|.++|+++++.++ .. + +|+|.. .+ .+.+..+|+. +...
T Consensus 268 -------------------~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~~--~~~~~~~l~~i~v~~G~ 324 (402)
T TIGR02006 268 -------------------VLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY--VE--GESLIMALKDLAVSSGS 324 (402)
T ss_pred -------------------HHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC--cC--HHHHHHhcCCEEEechh
Confidence 467899999999999999887532 22 3 355553 22 2344444431 1223
Q ss_pred EEeeccc--------------CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 656 HCVPASL--------------RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 656 ~~s~t~~--------------~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+|++... ...+++|++++++||++||+++++.|+++.+.+
T Consensus 325 ~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 325 ACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred hcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 4544211 113789999999999999999999999987664
No 32
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.84 E-value=8.4e-20 Score=200.91 Aligned_cols=308 Identities=15% Similarity=0.160 Sum_probs=203.7
Q ss_pred cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhc
Q psy11047 219 LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI 298 (943)
Q Consensus 219 n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i 298 (943)
....|..+|.+..+|. ++++++|. . .++|+++||+||.+||.+.- + |+
T Consensus 27 ~~~~YG~D~~~~~~e~----~~ae~~g~-~-----------a~~Fv~sGT~aN~lal~~~~----~------~~------ 74 (342)
T COG2008 27 GDDVYGEDPTTNALEQ----RIAELFGK-E-----------AALFVPSGTQANQLALAAHC----Q------PG------ 74 (342)
T ss_pred CCCCCCCCHHHHHHHH----HHHHHhCC-c-----------eEEEecCccHHHHHHHHHhc----C------CC------
Confidence 3567899999998887 56899988 3 48999999999999988642 1 22
Q ss_pred CCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhh-ccCCCcEEEEEecCCCcccccccHH
Q psy11047 299 NSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDK-KKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 299 ~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~-~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
-.|+|.+.+|....+++ .+|.+..+.+....+|.|++++++..|..+. +....|.++.-|.-| +.|.+-|++
T Consensus 75 ---~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~ 150 (342)
T COG2008 75 ---ESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLD 150 (342)
T ss_pred ---CeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCceecCHH
Confidence 24889999999999976 3666655555556899999999999998643 444556666666555 889998877
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|.+ +..+|+++|+ .+|+|||--+. +. +.+|
T Consensus 151 el~~-----------------i~~~~k~~~l-------~LHmDGAR~~n-A~-----valg------------------- 181 (342)
T COG2008 151 ELEA-----------------ISAVCKEHGL-------PLHMDGARLAN-AL-----VALG------------------- 181 (342)
T ss_pred HHHH-----------------HHHHHHHhCC-------ceeechHHHHH-HH-----HHcC-------------------
Confidence 6655 2339999999 99999995443 21 0111
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhh--hhcccCccccccCCCCcccccCccccCCCCCcchHH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH--RTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALK 532 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~--~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALk 532 (943)
+....+- .++||++|++.|.|+..-.+.+. ..|..+..|...... ++-|..+-
T Consensus 182 ---------~~~~~~~---~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~G-----------gl~~k~r~-- 236 (342)
T COG2008 182 ---------VALKTIK---SYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAG-----------GLMRKARF-- 236 (342)
T ss_pred ---------CCHHHHH---hhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhc-----------ccHhhhhH--
Confidence 1112222 46799999999999955444331 111112223221100 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
+..-+..-|++.+ |+.-..|..++|+++++
T Consensus 237 ----laA~~~~~l~~~~----------------------------------------------~~~~~~Han~mA~~La~ 266 (342)
T COG2008 237 ----LAAQGLYALEDDV----------------------------------------------WRLAADHANAMAARLAE 266 (342)
T ss_pred ----HHHHHHHHHhccH----------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 1111111222222 22223335788999999
Q ss_pred HHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCC-cEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 613 LVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ-GLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 613 ~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~-~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.+.+.|++++..|++.|+|..+++. ...+.+...|+++...--.... ..+||++|+.|+++||++++..++++
T Consensus 267 ~~~~~~G~~~~~~~~tN~vf~~l~~------~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 267 GLEAKPGVKLAFPVETNMVFVRLPE------SAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKAL 340 (342)
T ss_pred hhhhcCCceeccCCcccEEEEECCh------HHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999863 2235566666544332111122 48999999999999999999998876
Q ss_pred H
Q psy11047 692 A 692 (943)
Q Consensus 692 ~ 692 (943)
.
T Consensus 341 ~ 341 (342)
T COG2008 341 L 341 (342)
T ss_pred h
Confidence 4
No 33
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.83 E-value=7.1e-18 Score=191.67 Aligned_cols=323 Identities=14% Similarity=0.092 Sum_probs=210.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
.....+-..+++.+++++|.++. ...+||+|+|+++..++.... +..+ .+ ...|++
T Consensus 72 ~~~~~~~~~~r~~la~~~~~~~~---------~~v~~t~g~t~al~~i~~~~~---~~~~---~~---------gd~vl~ 127 (424)
T PLN02855 72 AKATDAYELARKKVAAFINASTS---------REIVFTRNATEAINLVAYTWG---LANL---KP---------GDEVIL 127 (424)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC---------CEEEEeCCHHHHHHHHHHHhh---hhcC---CC---------cCEEEE
Confidence 34445556788999999998532 268999999999765543210 0000 11 235788
Q ss_pred cCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 307 SDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 307 S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+..+|.|...+ +...+.+++.++++.++.+|++++++.|+.+ +.+|+.+..++.+|.+.|+++|++
T Consensus 128 ~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~---- 197 (424)
T PLN02855 128 SVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEK------TKLVATHHVSNVLGSILPVEDIVH---- 197 (424)
T ss_pred CCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccC------ceEEEEeCccccccccCCHHHHHH----
Confidence 88999875443 2233358889999888889999999999653 678899999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|+ ++++|++++.. .. +
T Consensus 198 ----------------l~~~~g~-------~vivD~a~~~g-~~--~--------------------------------- 218 (424)
T PLN02855 198 ----------------WAHAVGA-------KVLVDACQSVP-HM--P--------------------------------- 218 (424)
T ss_pred ----------------HHHHcCC-------EEEEEhhhhcC-Cc--C---------------------------------
Confidence 9999999 99999999654 21 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcc-c-ccCccccCCCCCcchHHHHHHH
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLA-I-DYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~-~-d~~~~tie~SRrfrALklW~tL 537 (943)
.+ +... .+|.+++++||+++...-+.+. +....-++++.+...... + +...+ .+..+||+.. +.
T Consensus 219 ~~-----~~~~-~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-~~~~~r~e~G----T~ 287 (424)
T PLN02855 219 VD-----VQTL-GADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTY-APPPSRFEAG----TP 287 (424)
T ss_pred CC-----chhc-CCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCcccc-CCChhhccCC----Ch
Confidence 00 1111 4699999999977632211110 000111223221110000 0 00001 1223455432 45
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 617 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~ 617 (943)
...+..++.+.++.+.+ .|++.|+++ ..+|++++.+.|+++
T Consensus 288 ~~~~~~~l~~al~~~~~---------------~g~~~i~~~------------------------~~~l~~~l~~~L~~~ 328 (424)
T PLN02855 288 AIGEAIGLGAAIDYLSE---------------IGMDRIHEY------------------------EVELGTYLYEKLSSV 328 (424)
T ss_pred HHHHHHHHHHHHHHHHH---------------hCHHHHHHH------------------------HHHHHHHHHHHHhcC
Confidence 56666666666665321 244444332 467899999999999
Q ss_pred CCeEEecCC------CccEEEEEecCCChHHHHHHHHHhcc-CcEEEeecc---------cCCCcEEEEeecCCCCHHHH
Q psy11047 618 PRFEIPAAR------HLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPAS---------LRIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 618 p~~eIl~~~------~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~---------~~g~~~lR~v~~~~tt~edI 681 (943)
|+++++.+. ..++|+|++.+.+ .+.+.+.|.++ |. .+.... +.-..++|+++++++|++||
T Consensus 329 ~g~~i~~~~~~~~~~r~~~v~~~~~~~~--~~~v~~~L~~~~gI-~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di 405 (424)
T PLN02855 329 PGVRIYGPKPSEGVGRAALCAFNVEGIH--PTDLSTFLDQQHGV-AIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEV 405 (424)
T ss_pred CCEEEeCCCcccccCcccEEEEEECCcC--HHHHHHHhcccCCE-EEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHH
Confidence 999998642 3689999997643 46788888777 64 333211 11246899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATEI 695 (943)
Q Consensus 682 d~ll~~I~~~~~~l 695 (943)
++++++|+++...+
T Consensus 406 ~~l~~~l~~~~~~~ 419 (424)
T PLN02855 406 DAFIHALKDTIAFF 419 (424)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987663
No 34
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.83 E-value=8.4e-18 Score=186.40 Aligned_cols=310 Identities=16% Similarity=0.124 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
......+.+++++++|.+.. ...+||+|||+++..++.+- + .+ .-.|+++..
T Consensus 43 ~~~~~~~~~~la~~~~~~~~---------~~v~~~~g~t~al~~~~~~~----~------~~---------gd~vl~~~~ 94 (376)
T TIGR01977 43 SREVEETRQLLAKLFNAPSS---------AHVVFTNNATTALNIALKGL----L------KE---------GDHVITTPM 94 (376)
T ss_pred HHHHHHHHHHHHHHhCcCCC---------CeEEEeCCHHHHHHHHHHhc----c------CC---------CCEEEECcc
Confidence 45556788899999998643 25789999999987665431 1 11 234777888
Q ss_pred CchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccc
Q psy11047 310 AHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 310 aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~ 385 (943)
+|.++..+. ...+..++.++.+.++.+|+++++++++++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~------- 161 (376)
T TIGR01977 95 EHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGE------- 161 (376)
T ss_pred hhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHH-------
Confidence 999876543 222458888998888999999999998643 678889999999999999999999
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
+|+++|+ ++++|+|++.+ .. + ..
T Consensus 162 -------------l~~~~~~-------~livD~a~~~g-~~--~---------------------------------~~- 184 (376)
T TIGR01977 162 -------------LAQENGI-------FFILDAAQTAG-VI--P---------------------------------ID- 184 (376)
T ss_pred -------------HHHHcCC-------EEEEEhhhccC-cc--C---------------------------------CC-
Confidence 9999999 99999999766 22 1 00
Q ss_pred hhhhhcCCCCeeEEEEcCCCccCccCc-chh--hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH
Q psy11047 466 ASLRIQGLGRAQNFTIVPSSLLRVKNS-GAL--HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542 (943)
Q Consensus 466 ~r~~l~Gie~ADSItiDpHK~L~vr~~-~~L--~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~ 542 (943)
.. -..+|++++++|||++.+.. +.+ .+.....+ +.. ...+....+.+..-...+|++.. +....+.
T Consensus 185 ~~-----~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~r~~~~----t~~~~~~ 253 (376)
T TIGR01977 185 MT-----ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP-LKS-GGTGSHSALIDQPSELPDRFESG----TLNTPGI 253 (376)
T ss_pred ch-----hcCCCEEEecccccccCCCCceEEEEcCCcCcCc-eec-CCCccccccccccccchhhccCC----CCCHHHH
Confidence 00 13689999999999873221 111 00000011 111 00000000000000111223210 1222222
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.++.+.++.+.+ .|.+.++++ ..++++++.+.|.+.+++++
T Consensus 254 ~a~~~al~~~~~---------------~g~~~~~~~------------------------~~~l~~~~~~~l~~~~~~~~ 294 (376)
T TIGR01977 254 AGLNAGIKFIEK---------------IGIANIAKK------------------------ECMLTEKLLNGLREINKVKI 294 (376)
T ss_pred HHHHHHHHHHHH---------------hCHHHHHHH------------------------HHHHHHHHHHHHhcCCCeEE
Confidence 333333333211 122222221 46789999999999999999
Q ss_pred ecCC----CccEEEEEecCCChHHHHHHHHHhcc-CcEEEeecc-----------cCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 623 PAAR----HLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPAS-----------LRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 623 l~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~-----------~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
+.+. ..++++|++.+.+ ...+.+.|.++ |. ++.... ....+.+|++++.++|.+||+++++
T Consensus 295 ~~~~~~~~~~~~v~~~~~~~~--~~~~~~~L~~~~gi-~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~ 371 (376)
T TIGR01977 295 YGPADPANRVGVVSFTVEGID--SEEVADILDEKFDI-ATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLE 371 (376)
T ss_pred eCCCCccccCCeEEEEECCCC--HHHHHHHHhccCCE-EEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHH
Confidence 8642 4789999997654 46788888877 53 332110 1134689999999999999999999
Q ss_pred HHHH
Q psy11047 687 EIRN 690 (943)
Q Consensus 687 ~I~~ 690 (943)
.|++
T Consensus 372 ~l~~ 375 (376)
T TIGR01977 372 ALSE 375 (376)
T ss_pred HHhh
Confidence 9875
No 35
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.82 E-value=3.7e-18 Score=190.09 Aligned_cols=315 Identities=16% Similarity=0.101 Sum_probs=205.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..+..+....++-..+.+.+++++|.+++ ...+||+|+|+++..++...+... . +
T Consensus 33 ~~~~~~~~~~~~~~~~r~~la~~lg~~~~---------~~v~~~~~~t~a~~~~~~~l~~~~-------~---------~ 87 (371)
T PF00266_consen 33 GVSHRSREFAEILEEAREALAKLLGAPPD---------EEVVFTSNGTEALNAVASSLLNPL-------K---------P 87 (371)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHHHHTSSTT---------EEEEEESSHHHHHHHHHHHHHHHG-------T---------T
T ss_pred cccchhhhhhHHHHHHHHHHHHhcCCccc---------cccccccccchhhhhhhhcccccc-------c---------c
Confidence 44555666667777899999999999873 257899999998877776653221 1 2
Q ss_pred ceEEEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHh
Q psy11047 301 RLVAYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCL 376 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eI 376 (943)
...|+++...|+|...++ ...+.+++.|+.+.++.+|+++++++|..+ +.+|+.++..+.+|...|+++|
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~------~~lv~~~~~~~~tG~~~pi~~I 161 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD------TRLVSISHVENSTGVRNPIEEI 161 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT------ESEEEEESBETTTTBBSSHHHH
T ss_pred ccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccc------cceEEeecccccccEEeeecee
Confidence 235788899999987554 234568999999999999999999999755 7799999999999999999999
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhh
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 456 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~ 456 (943)
++ +|+++|. +++|||+++.+ ..++
T Consensus 162 ~~--------------------~~~~~~~-------~~~vD~~~~~g-~~~i---------------------------- 185 (371)
T PF00266_consen 162 AK--------------------LAHEYGA-------LLVVDAAQSAG-CVPI---------------------------- 185 (371)
T ss_dssp HH--------------------HHHHTTS-------EEEEE-TTTTT-TSS-----------------------------
T ss_pred hh--------------------hhhccCC-------ceeEechhccc-cccc----------------------------
Confidence 99 9999999 99999999876 3211
Q ss_pred ccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh------hhhcccCccccccCCCCcccccCcccc-CCCCCcc
Q psy11047 457 SKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL------HRTFNVEPLYLRHENSGLAIDYMHWQI-PLSKRFR 529 (943)
Q Consensus 457 ~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L------~~af~~~p~YL~~~~~g~~~d~~~~ti-e~SRrfr 529 (943)
. ++. -.+|.+++++||+++.+.-+.| ...+ .|...... .........++. +..+++.
T Consensus 186 -----d-------~~~-~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~--~p~~~~~~-~~~~~~~~~~~~~~~~~~~~ 249 (371)
T PF00266_consen 186 -----D-------LDE-LGADFLVFSSHKLGGPPGLGFLYVRPEAIERL--RPAKPGGG-YLDFPSLQEYGLADDARRFE 249 (371)
T ss_dssp -------------TTT-TTESEEEEESTSTTSSSTEEEEEEEHHHHHHH--HTSSSSSS-TTTHHHHHHHCHHSTTTGSS
T ss_pred -----c-------ccc-cccceeeecccccCCCCchhhheehhhhhhcc--cccccccc-ccccccchhccccccccccc
Confidence 1 111 2689999999995552221111 1111 11111111 000001111111 1222332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 609 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~ 609 (943)
+. +....+..++...++.+.+ .|++.|+++ ..+++++
T Consensus 250 ~G----T~~~~~~~~l~~al~~~~~---------------~g~~~i~~~------------------------~~~l~~~ 286 (371)
T PF00266_consen 250 GG----TPNVPAIYALNEALKLLEE---------------IGIERIRER------------------------IRELAEY 286 (371)
T ss_dssp SS----S--HHHHHHHHHHHHHHHH---------------HHHHHHHHH------------------------HHHHHHH
T ss_pred cc----ceeeehhhhHHHHHhhhhc---------------cccccchhh------------------------hhhHHHH
Confidence 11 2223333333334433211 233333322 4678999
Q ss_pred HHHHHhCCCCeEEecC----CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc---------CCCcEEEEeecCCC
Q psy11047 610 FEALVLGDPRFEIPAA----RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL---------RIQGLGRAQNFTRT 676 (943)
Q Consensus 610 l~~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~---------~g~~~lR~v~~~~t 676 (943)
+.+.|.+.++++++.+ ...++++|.+.+.+ ...+.+.|.++|. .++.... .-.+++|+++++++
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~L~~~~I-~~~~G~~~~~~~~~~~~~~~~iRvS~~~~n 363 (371)
T PF00266_consen 287 LREALEELPGIEVLGPDDEPRRPSIVSFNLPGSD--ADDVVKYLEERGI-AVSTGSACAGPSLDILGMGGVIRVSLHYYN 363 (371)
T ss_dssp HHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSS--HHHHHHHHHHHTE-EEEESTTTCHHHHHHHHTTTEEEEE-GTTS
T ss_pred HHhhhhcCCceeEeeecccccccceEEEeecCCC--HHHHHHHHhhcCE-EEeccCcccHHHHHHhCCCCEEEEeccCCC
Confidence 9999999999999763 35899999997765 3788888888864 4443111 12379999999999
Q ss_pred CHHHHHHH
Q psy11047 677 TNDDITRD 684 (943)
Q Consensus 677 t~edId~l 684 (943)
|++||+++
T Consensus 364 t~~dv~~l 371 (371)
T PF00266_consen 364 TEEDVDRL 371 (371)
T ss_dssp SHHHHHHH
T ss_pred CHHHHhhC
Confidence 99999986
No 36
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.82 E-value=3.1e-17 Score=183.50 Aligned_cols=307 Identities=14% Similarity=0.097 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
.-++.+..+++.+|..+. ...+||+|+|+++..++.+.....+. .+ ++..|+++..+|
T Consensus 43 ~l~~a~~~~~~~~~~~~~---------~~i~~t~g~teal~~~~~~~~~~~~~-----~~--------~~~~vi~~~~e~ 100 (382)
T TIGR03403 43 AIAEALDKLYKGINARDL---------DDIIITSCATESNNWVLKGVYFDEIL-----KG--------GKNHIITTEVEH 100 (382)
T ss_pred HHHHHHHHHHHHcCcCCC---------CeEEEeCCHHHHHHHHHHHHHHhhcc-----cC--------CCCEEEEcCCcc
Confidence 334455566667776322 26899999999998877654211000 01 123578899999
Q ss_pred hHHHHHHH---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 312 SSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 312 ySv~KAa~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.|+..+.. ..+.+++.||++++|.+|+++|+++++.+ +.+++.+..++.+|.+.|+++|.+
T Consensus 101 ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~---------- 164 (382)
T TIGR03403 101 PAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEK------TALVSVMWANNETGMIFPIKEIGE---------- 164 (382)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccC------CeEEEEEcccCCCccccCHHHHHH----------
Confidence 99887752 23458999999989999999999998754 567888899999999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|+++|+ |+|+|++++.+ .. | ++ ..
T Consensus 165 ----------la~~~g~-------~~ivD~a~~~g-~~--~---------------------------------~~-~~- 189 (382)
T TIGR03403 165 ----------ICKERGV-------LFHTDAVQAIG-KI--P---------------------------------VD-VQ- 189 (382)
T ss_pred ----------HHHHcCC-------EEEEechhhcC-CC--c---------------------------------cC-cc-
Confidence 9999999 99999998755 22 1 11 00
Q ss_pred hhcCCCCeeEEEEcCCCccCccCcchh--hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHH
Q psy11047 469 RIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ 546 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~ 546 (943)
. ..+|.+++++|||++.+.-+.+ +..+...| ++... . ... ++++ .+....+..++.
T Consensus 190 ---~-~~~D~~~~s~~K~~gp~G~g~l~vr~~~~~~p-~~~g~---~-------~~~---~~~~----gt~~~~~~~al~ 247 (382)
T TIGR03403 190 ---K-AGVDFLSFSAHKFHGPKGVGGLYIRKGVELTP-LFHGG---E-------HMG---GRRS----GTLNVPYIVAMG 247 (382)
T ss_pred ---c-cCCCEEEEcchhhCCCCceEEEEECCCCCCCC-cccCC---C-------CCC---Cccc----CCcChHHHHHHH
Confidence 1 2579999999999774332222 11111112 11100 0 001 1111 133444444555
Q ss_pred HHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC
Q psy11047 547 KHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR 626 (943)
Q Consensus 547 ~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~ 626 (943)
+.++...+ +++.+.+ +..++++++.+.|.++|+++++.+.
T Consensus 248 ~al~~~~~----------------~~~~~~~------------------------~~~~l~~~l~~~L~~~~~~~~~~~~ 287 (382)
T TIGR03403 248 EAMRLANE----------------YLDFEKS------------------------HVRRLRDRLEDALLELPDVFVVGDR 287 (382)
T ss_pred HHHHHHHH----------------hHHHHHH------------------------HHHHHHHHHHHHHhcCCCEEEECCC
Confidence 55544211 0111111 1457888999999999999998753
Q ss_pred ---CccEEEEEecCCChHHHHHHHHHhccCcEEEee--c---cc---------C-----CCcEEEEeecCCCCHHHHHHH
Q psy11047 627 ---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP--A---SL---------R-----IQGLGRAQNFTRTTNDDITRD 684 (943)
Q Consensus 627 ---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~--t---~~---------~-----g~~~lR~v~~~~tt~edId~l 684 (943)
..++++|.+++.+ .+.+...|.++|...-+. + .+ . ..+++|+++++++|++||+++
T Consensus 288 ~~~~~~~~~~~~~~~~--~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~ 365 (382)
T TIGR03403 288 EHRVPNTILISIKGVE--GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYT 365 (382)
T ss_pred CCCcCCEEEEEeCCCC--HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHH
Confidence 2578899987644 467777787777533211 1 11 0 136899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy11047 685 WNEIRNTATEI 695 (943)
Q Consensus 685 l~~I~~~~~~l 695 (943)
+++|+++.+++
T Consensus 366 ~~~l~~~~~~~ 376 (382)
T TIGR03403 366 IEVFKKAVQRL 376 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999876664
No 37
>PRK14012 cysteine desulfurase; Provisional
Probab=99.79 E-value=1.3e-17 Score=188.43 Aligned_cols=301 Identities=15% Similarity=0.099 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
-..+.+++++++|.+.+ ..+||+|||+++..++.+...... .+ ...|+++..+|+
T Consensus 51 ~~~~r~~ia~~~g~~~~----------~v~~~~g~t~al~~~l~~l~~~~~------~~---------gd~Vi~~~~~~~ 105 (404)
T PRK14012 51 VDIARNQIADLIGADPR----------EIVFTSGATESDNLAIKGAAHFYQ------KK---------GKHIITSKTEHK 105 (404)
T ss_pred HHHHHHHHHHHcCcCcC----------eEEEeCCHHHHHHHHHHHHHHhhc------CC---------CCEEEEecCccH
Confidence 33577899999998653 589999999999888876532211 11 234778899999
Q ss_pred HHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 313 SVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 313 Sv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
|+..++. + .+.+++.|+++.+|.+|+++|+++|+++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 106 s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~----------- 168 (404)
T PRK14012 106 AVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDD------TILVSIMHVNNEIGVIQDIAAIGE----------- 168 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCC------CEEEEEECcCCCccchhhHHHHHH-----------
Confidence 9877763 2 2447889999999999999999999754 568889999999999999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|+++|+ ++|+|+|++.. .. + .+
T Consensus 169 ---------la~~~g~-------~vivD~a~~~g-~~--~---------------------------------~~----- 191 (404)
T PRK14012 169 ---------ICRERGI-------IFHVDAAQSVG-KV--P---------------------------------ID----- 191 (404)
T ss_pred ---------HHHHcCC-------EEEEEcchhcC-Cc--c---------------------------------cC-----
Confidence 9999999 99999999765 22 1 01
Q ss_pred hcCCCCeeEEEEcCCCccCccCcchh-hh-h--cccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKNSGAL-HR-T--FNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~~~~L-~~-a--f~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl 545 (943)
+.. ..+|.+++++||+++....+.+ .. . ....+.+.+. + . .+++++. +....+.-|+
T Consensus 192 ~~~-~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~---~---------~--~~~~~~g----t~~~~~~~~l 252 (404)
T PRK14012 192 LSK-LKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGG---G---------H--ERGMRSG----TLPTHQIVGM 252 (404)
T ss_pred ccc-CCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCC---C---------c--cCCccCC----CcCHHHHHHH
Confidence 011 2579999999998763321221 00 0 0111111100 0 0 1122211 0111112233
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 625 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~ 625 (943)
.+.++.+.. +...+.++ ..++++++.+.|++.|++.+..+
T Consensus 253 ~~al~~~~~----------------~~~~~~~~------------------------~~~l~~~l~~~L~~~~~i~~~~~ 292 (404)
T PRK14012 253 GEAARIAKE----------------EMATENER------------------------IRALRDRLWNGIKDIEEVYLNGD 292 (404)
T ss_pred HHHHHHHHh----------------hHHHHHHH------------------------HHHHHHHHHHHHhcCCCEEEeCC
Confidence 333333110 01111111 46788999999999998887643
Q ss_pred C-----CccEEEEEecCCChHHHHHHHHHhcc---CcEEEeeccc--------------CCCcEEEEeecCCCCHHHHHH
Q psy11047 626 R-----HLGMVVIRLLGENILTEKLLKRLNSK---GRLHCVPASL--------------RIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 626 ~-----~l~iV~Fr~~g~n~l~~~Ll~~L~~~---G~~~~s~t~~--------------~g~~~lR~v~~~~tt~edId~ 683 (943)
. ....++|.+.+. ..+...|... ...+|.+... ...+++|+++++.+|++||++
T Consensus 293 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~ 368 (404)
T PRK14012 293 LEQRVPGNLNVSFNYVEG----ESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY 368 (404)
T ss_pred ccccCCCEEEEEEeCcCH----HHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHH
Confidence 1 222466665432 3444444321 1123333211 124689999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 684 DWNEIRNTATEI 695 (943)
Q Consensus 684 ll~~I~~~~~~l 695 (943)
+++.|+++.+.+
T Consensus 369 ~~~~l~~~~~~~ 380 (404)
T PRK14012 369 AIELVRKSIGKL 380 (404)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 38
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.79 E-value=3.9e-17 Score=182.67 Aligned_cols=308 Identities=15% Similarity=0.047 Sum_probs=196.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+....++...+.+++++++|.+.. ..+++.+||.+...++.+++.. ++ +.-.|+
T Consensus 59 ~~g~~~~~~~~~~~la~~~g~~~~----------~v~~~~~g~~~~~~~~~~~~~~---------~~-------~gd~Vl 112 (398)
T cd00613 59 SQGRLQALFELQTMLCELTGMDVA----------NASLQDEATAAAEAAGLAAIRA---------YH-------KRNKVL 112 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcc----------ceeccCchHHHHHHHHHHHHhc---------cc-------CCCEEE
Confidence 455667888999999999998643 3567776665555555554321 10 123477
Q ss_pred ecCCCchHHHHHHH-HC---CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH-HHhhhhc
Q psy11047 306 CSDQAHSSVEKAGL-IG---LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY-CCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~-LG---~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL-~eIa~~~ 380 (943)
+++..|.+...++. +| +.+++.++.++++.+|+++|++++..+ +.+|+.+..+ .+|.+.|+ ++|++
T Consensus 113 ~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~-- 183 (398)
T cd00613 113 VPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIAD-- 183 (398)
T ss_pred EcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHH--
Confidence 88999999888774 44 247888998878899999999988643 5677777765 57999885 99999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+|++||+ |+++|+++++. ..
T Consensus 184 ------------------la~~~g~-------~livD~~~~~~-~~---------------------------------- 203 (398)
T cd00613 184 ------------------IAHSAGA-------LVYVDGDNLNL-TG---------------------------------- 203 (398)
T ss_pred ------------------HHHhcCC-------EEEEEeccccc-cC----------------------------------
Confidence 9999999 99999987654 11
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccC------------ccCcchhhhhcccCccccccCCCCc-c--cccC----ccc
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLR------------VKNSGALHRTFNVEPLYLRHENSGL-A--IDYM----HWQ 521 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~------------vr~~~~L~~af~~~p~YL~~~~~g~-~--~d~~----~~t 521 (943)
.... +-..+|+++.++|||+. +.++. +...+.....+......+. . .++. .+.
T Consensus 204 -~~~~------~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 275 (398)
T cd00613 204 -LKPP------GEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKE-LVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIR 275 (398)
T ss_pred -CCCh------HHcCCCEEEeeccccCCCCCCCCCceeEEEEhhh-hHhhCCCCeeccccccCCCcceEEecccchhhcc
Confidence 0111 01257999999999971 11111 1111110000000000000 0 0000 000
Q ss_pred cCCCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccc
Q psy11047 522 IPLSK-------RFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 594 (943)
Q Consensus 522 ie~SR-------rfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~ 594 (943)
.+.+. ...+...|.++..++..|+.+..++
T Consensus 276 ~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~------------------------------------------- 312 (398)
T cd00613 276 REKATSNICTGQALLALMAAMYIVYLGPEGLKEIAER------------------------------------------- 312 (398)
T ss_pred cccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHH-------------------------------------------
Confidence 00011 1233466777787888888776666
Q ss_pred cccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeec
Q psy11047 595 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF 673 (943)
Q Consensus 595 ~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~ 673 (943)
..++++++.+.|++++.......+..++++|++.+. +....++.++|.++|.+ +....+.+...+|++.+
T Consensus 313 --------~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~-~~~~~~~~~~~lRis~~ 383 (398)
T cd00613 313 --------AHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFH-APTMYLPVDGTLMIEPT 383 (398)
T ss_pred --------HHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCcc-ccccccCCCCeEEEEcC
Confidence 346788888888887765533344567788888642 22357788888888864 33222345679999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEI 688 (943)
Q Consensus 674 ~~tt~edId~ll~~I 688 (943)
.++|++||+++++.|
T Consensus 384 ~~~t~edid~~~~~L 398 (398)
T cd00613 384 ETETKEELDALLEAL 398 (398)
T ss_pred CCCCHHHHHHHHHhC
Confidence 999999999998764
No 39
>PRK02948 cysteine desulfurase; Provisional
Probab=99.78 E-value=1.4e-16 Score=177.89 Aligned_cols=315 Identities=14% Similarity=0.098 Sum_probs=202.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..+..+.....+...+.+++++++|.+++ ..+||+|+|++|..++.+...... . +
T Consensus 33 ~~~~~~~~~~~~~~~~r~~la~~~g~~~~----------~i~~~~g~t~a~~~~~~~~~~~~~------~---------~ 87 (381)
T PRK02948 33 SLHDIGGTASSLLQVCRKTFAEMIGGEEQ----------GIYFTSGGTESNYLAIQSLLNALP------Q---------N 87 (381)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCcHHHHHHHHHHHHHHhcc------C---------C
Confidence 33445566677788899999999998654 688999999999888766532110 0 1
Q ss_pred ceEEEecCCCchHHHHHHH---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 301 RLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
+.+|+++..+|.|+..+.. ..+.+++.++++.+|.+|+++|++.+.++ +.+|+.+..++.+|.+.|+++|.
T Consensus 88 g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~ 161 (381)
T PRK02948 88 KKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPD------TVLASIQHANSEIGTIQPIAEIG 161 (381)
T ss_pred CCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCC------CEEEEEECCcCCcEeehhHHHHH
Confidence 2357789999999877652 23458899999888999999999988643 67899999999999999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhc
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNS 457 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~ 457 (943)
+ +|+++|+ |+|||++++.. .. +
T Consensus 162 ~--------------------l~~~~~~-------~vivD~~~~~g-~~--~---------------------------- 183 (381)
T PRK02948 162 A--------------------LLKKYNV-------LFHSDCVQTFG-KL--P---------------------------- 183 (381)
T ss_pred H--------------------HHHHcCC-------EEEEEChhhcc-cc--c----------------------------
Confidence 9 9999999 99999886543 21 1
Q ss_pred cCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccc-cccCCCCcccccCccccCCCCCcchHHHHHH
Q psy11047 458 KGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLY-LRHENSGLAIDYMHWQIPLSKRFRALKLWFV 536 (943)
Q Consensus 458 ~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~Y-L~~~~~g~~~d~~~~tie~SRrfrALklW~t 536 (943)
.. +.. ..+|.+++++||+++...-+.+. ..+.. +.....+. ...+++.+. +
T Consensus 184 -----~~-----~~~-~~~d~~~~s~~K~~gp~G~G~l~----~~~~~~~~~~~~~~---------~~~~~~~~~----t 235 (381)
T PRK02948 184 -----ID-----VFE-MGIDSLSVSAHKIYGPKGVGAVY----INPQVRWKPVFPGT---------THEKGFRPG----T 235 (381)
T ss_pred -----cC-----ccc-CCCCEEEecHHhcCCCCcEEEEE----EcCCCCCCCcccCC---------CCCCCcCCC----C
Confidence 00 011 14799999999988743322220 01100 00000000 001122210 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
....+..++.+.++...+ +.+.++++ ..++++++.+.|++
T Consensus 236 ~~~~~~~a~~~al~~~~~----------------~~~~~~~~------------------------~~~~~~~l~~~L~~ 275 (381)
T PRK02948 236 VNVPGIAAFLTAAENILK----------------NMQEESLR------------------------FKELRSYFLEQIQT 275 (381)
T ss_pred ccHHHHHHHHHHHHHHHH----------------HHHHHHHH------------------------HHHHHHHHHHHHhc
Confidence 333333344444433211 00111111 46688888888887
Q ss_pred CCCeEEe--cC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecc----c---------------CCCcEEEEee
Q psy11047 617 DPRFEIP--AA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----L---------------RIQGLGRAQN 672 (943)
Q Consensus 617 ~p~~eIl--~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~---------------~g~~~lR~v~ 672 (943)
. ++++. .+ ....++.|.+.+.+ .+.+...|.++|........ + ....++|+++
T Consensus 276 ~-~~~v~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~ 352 (381)
T PRK02948 276 L-PLPIEVEGHSTSCLPHIIGVTIKGIE--GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSF 352 (381)
T ss_pred C-CCCEEEeCCCccCcCCEEEEEeCCCC--HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEc
Confidence 7 34433 21 12457889887644 46677778777754322110 1 1246899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 673 ~~~tt~edId~ll~~I~~~~~~l 695 (943)
++++|++||+++++.|+++.+.+
T Consensus 353 ~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 353 GQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876544
No 40
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.77 E-value=1.4e-16 Score=175.68 Aligned_cols=309 Identities=10% Similarity=-0.010 Sum_probs=196.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|...++..++.+++++++|.+.. ...++|+|||+|+..++.+. . .+| -.|
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~---------~~~~~~~~~t~al~~~~~~~----~------~~g---------~~v 77 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENG---------LTFLLSGSGTGAMEAALSNL----L------EPG---------DKV 77 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCC---------CEEEEecCcHHHHHHHHHHh----C------CCC---------CEE
Confidence 4667778788899999999999543 24789999999987777542 1 122 235
Q ss_pred EecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 305 YCSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 305 ~~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
+++...|++. ..++...+.+++.++++.++.+|++++++.++.. .|.+|+.+...+.+|.+.|+++|.+
T Consensus 78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~~~~i~~---- 148 (356)
T cd06451 78 LVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNPLEGIGA---- 148 (356)
T ss_pred EEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccCHHHHHH----
Confidence 6667788873 3444433348899999888899999999999751 2667888888889999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|+ ++++|++++.. .. +
T Consensus 149 ----------------~a~~~~~-------~li~D~~~~~g-~~--~--------------------------------- 169 (356)
T cd06451 149 ----------------LAKKHDA-------LLIVDAVSSLG-GE--P--------------------------------- 169 (356)
T ss_pred ----------------HHHhcCC-------EEEEeeehhcc-Cc--c---------------------------------
Confidence 9999999 99999987533 11 0
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccCccCc-ch------hhhhcc----cCccccccCCCCcccccCccc-cC-CCCCc-
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLRVKNS-GA------LHRTFN----VEPLYLRHENSGLAIDYMHWQ-IP-LSKRF- 528 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~vr~~-~~------L~~af~----~~p~YL~~~~~g~~~d~~~~t-ie-~SRrf- 528 (943)
.+.. . ..+|.+..++|||++...+ +. +...+. ....|+.... ..++...+ .. ++-..
T Consensus 170 ~~~~-----~-~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~~~ 240 (356)
T cd06451 170 FRMD-----E-WGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL---LLKYWGEGYSYPHTPPVN 240 (356)
T ss_pred cccc-----c-cCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH---HHhhhcccCCCCCCChHH
Confidence 0000 0 1468999999999883221 11 111111 0011110000 00000000 00 01011
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
....++.+++.+...|+.+..++ ..++++
T Consensus 241 ~~~a~~aal~~l~~~~~~~~~~~---------------------------------------------------~~~~~~ 269 (356)
T cd06451 241 LLYALREALDLILEEGLENRWAR---------------------------------------------------HRRLAK 269 (356)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH---------------------------------------------------HHHHHH
Confidence 11244455555555566555554 346778
Q ss_pred HHHHHHhCCCCeEEecCC--CccEE-EEEecCCChHHHHHHHHHhcc-CcEEEeecc-cCCCcEEEEeecCCCCHHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAAR--HLGMV-VIRLLGENILTEKLLKRLNSK-GRLHCVPAS-LRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~~--~l~iV-~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t~-~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.+.|.+. ++++..++ ..+++ .+++.+ ......+.++|.++ |. ++++.. .....++|+++++.+|++||++
T Consensus 270 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~gI-~~~~g~~~~~~~~iRis~~~~~~~e~v~~ 346 (356)
T cd06451 270 ALREGLEAL-GLKLLAKPELRSPTVTAVLVPE-GVDGDEVVRRLMKRYNI-EIAGGLGPTAGKVFRIGHMGEATREDVLG 346 (356)
T ss_pred HHHHHHHHc-CCeeccCcccCCCceEEEECCC-CCCHHHHHHHHHHhCCE-EEecccccccCCEEEEecCCCCCHHHHHH
Confidence 888888776 78887543 24555 455542 12256888888887 65 444321 1224599999999999999999
Q ss_pred HHHHHHHHH
Q psy11047 684 DWNEIRNTA 692 (943)
Q Consensus 684 ll~~I~~~~ 692 (943)
++++|+++.
T Consensus 347 ~~~~l~~~~ 355 (356)
T cd06451 347 VLSALEEAL 355 (356)
T ss_pred HHHHHHHHh
Confidence 999998753
No 41
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.76 E-value=5.6e-16 Score=173.57 Aligned_cols=312 Identities=11% Similarity=0.032 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
....++...+.+.+++++|.+.. ..++++|+|+++...+.+.... ..+| ..|++
T Consensus 56 ~~~~~~~~~l~~~ia~~~~~~~~----------~v~~~~~~t~~l~~~~~~~~~~-------~~~g---------d~vl~ 109 (397)
T TIGR01976 56 RRADQVVDDAREAVADLLNADPP----------EVVFGANATSLTFLLSRAISRR-------WGPG---------DEVIV 109 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC----------eEEEeCCHHHHHHHHHHHHHhc-------CCCC---------CEEEE
Confidence 34456667889999999998653 4789999999975444332110 0122 34777
Q ss_pred cCCCchHHHHH----HHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 307 SDQAHSSVEKA----GLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 307 S~~aHySv~KA----a~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
++..|+|...+ +...+.+++.++.+. ++.+|++++++.|.++ +.+|+.+..++.+|.+.|+++|++
T Consensus 110 ~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~------~~lv~i~~~~n~tG~~~~~~~i~~--- 180 (397)
T TIGR01976 110 TRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPR------TRLVAVTAASNTLGSIVDLAAITE--- 180 (397)
T ss_pred cCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCC------ceEEEEeCCCCCCCccCCHHHHHH---
Confidence 88899886543 333345788888875 7899999999998643 678888899999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|++||+ ++++|+|+... ..
T Consensus 181 -----------------~~~~~~~-------~~ivD~a~~~~-~~----------------------------------- 200 (397)
T TIGR01976 181 -----------------LVHAAGA-------LVVVDAVHYAP-HG----------------------------------- 200 (397)
T ss_pred -----------------HHHHcCC-------EEEEehhhhcc-cc-----------------------------------
Confidence 9999999 99999998543 21
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchhh-h-hcccCccccccCCCCcccccCcccc-CCCCCcc-hHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH-R-TFNVEPLYLRHENSGLAIDYMHWQI-PLSKRFR-ALKLWFVI 537 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~-~-af~~~p~YL~~~~~g~~~d~~~~ti-e~SRrfr-ALklW~tL 537 (943)
.. ... . ..+|.+++++|||++.+-...+. . ....-.++... ..+......+ .|++.+. .+.++.++
T Consensus 201 ~~-~~~----~-~~~d~~~~s~~K~~g~~~G~l~~~~~~~~~l~~~~~~----~~~~~~~~~~~~gt~~~~~~~~l~~al 270 (397)
T TIGR01976 201 LI-DVQ----A-TGADFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLT----FSYDTGPERFELGTPQYELLAGVVAAV 270 (397)
T ss_pred CC-CHH----H-cCCCEEEEechhhcCCceEEEEEcHHHHhhCCCcccc----CccCCCcchhcCCCCCHHHHHHHHHHH
Confidence 00 111 1 15799999999999843211110 0 00000001000 0000000001 1222221 22333333
Q ss_pred HHHHHHHH------HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 538 RNFGIKGL------QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 538 r~~G~~Gl------~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
+.+-..|. +..+.. +++.++++ ..++++++.
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~-------------------~~~~~~~~------------------------~~~l~~~l~ 307 (397)
T TIGR01976 271 DYLAGLGESANGSRRERLVA-------------------SFQAIDAY------------------------ENRLAEYLL 307 (397)
T ss_pred HHHHHhCcccccchhhhhhH-------------------HHHHHHHH------------------------HHHHHHHHH
Confidence 33322210 000000 01111111 367889999
Q ss_pred HHHhCCCCeEEecC----CCccEEEEEecCCChHHHHHHHHHhccCcEEEeec----------cc-CCCcEEEEeecCCC
Q psy11047 612 ALVLGDPRFEIPAA----RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA----------SL-RIQGLGRAQNFTRT 676 (943)
Q Consensus 612 ~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t----------~~-~g~~~lR~v~~~~t 676 (943)
+.|++.++++++.+ ...+++.|.+.+.+ ...+.++|.++|.+.-+.. .+ ....++|+++++++
T Consensus 308 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 385 (397)
T TIGR01976 308 VGLSDLPGVTLYGVARLAARVPTVSFTVHGLP--PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYN 385 (397)
T ss_pred HHHhcCCCEEEeCCCCccCCCceEEEEeCCcC--HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccC
Confidence 99999888999764 36899999987543 4678888988876432211 11 13468999999999
Q ss_pred CHHHHHHHHHHH
Q psy11047 677 TNDDITRDWNEI 688 (943)
Q Consensus 677 t~edId~ll~~I 688 (943)
|++||++++++|
T Consensus 386 t~~di~~l~~~l 397 (397)
T TIGR01976 386 TAEEVDRLLEAL 397 (397)
T ss_pred CHHHHHHHHHhC
Confidence 999999998764
No 42
>KOG1368|consensus
Probab=99.76 E-value=9.5e-18 Score=179.85 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=214.0
Q ss_pred HHHHHHHhcc--CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 210 DMLSDAINCL--GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 210 d~L~~alN~n--~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+|-..+.|.. -+.|...|.+.+||.+| |+|+|-+ .|.|+++||++|++|+.+...+
T Consensus 37 eMr~am~eA~vgDdVyGeD~tt~rLE~~v----A~l~GKE------------AgLFv~SGTmgNllaIm~Hc~~------ 94 (384)
T KOG1368|consen 37 EMRRAMAEASVGDDVYGEDPTTNRLEQRV----AELFGKE------------AGLFVPSGTMGNLLAIMVHCHQ------ 94 (384)
T ss_pred HHHHHHhhcccCcccccCCccHHHHHHHH----HHHhCcc------------ceeeecccccccHHHHHHHhcC------
Confidence 4444444443 35789999999999977 7888864 5899999999999999875421
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhh-ccCCCc-EEEEEec
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDK-KKHLIP-FFIFSGL 362 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~-~kG~~P-~~VVaTa 362 (943)
+| --|++.+.+|.-..+++ .+++..++.|...++|.|++++++.+|.... .-..+| .++|. -
T Consensus 95 ---rg---------~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIcl-E 161 (384)
T KOG1368|consen 95 ---RG---------SEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICL-E 161 (384)
T ss_pred ---CC---------ceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEe-e
Confidence 22 23789999998877765 4788899999999999999999999998432 222233 34444 3
Q ss_pred CCCc-cc-ccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh--hcCCCccccccccccceee
Q psy11047 363 ALPA-FL-VVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL--VLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 363 GTT~-tG-aIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA--~GG~~afeLp~~~~Lg~Vc 438 (943)
.|.. +| .+-||+++.+ +..+|+++|+ .+|+||| |.++.+.-+
T Consensus 162 NT~~~~Gg~vlPle~~~~-----------------v~~lak~~gl-------kLH~DGARi~NAavasgV---------- 207 (384)
T KOG1368|consen 162 NTHNNCGGKVLPLEELDR-----------------VKALAKRHGL-------KLHMDGARIFNAAVASGV---------- 207 (384)
T ss_pred ccccccCceEeeHHHHHH-----------------HHHHHhccCC-------eeecchhhhhhHHHHcCC----------
Confidence 3433 34 8889887665 2238999999 9999999 544422211
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhh--hcccCccccccCCCCcccc
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHR--TFNVEPLYLRHENSGLAID 516 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~--af~~~p~YL~~~~~g~~~d 516 (943)
| .... .+.+||++++..|.|+.+-++.+.. .|-..+..+..
T Consensus 208 -------------------------~-vk~i---~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RK-------- 250 (384)
T KOG1368|consen 208 -------------------------P-VKKI---CSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRK-------- 250 (384)
T ss_pred -------------------------C-HHHH---HHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHH--------
Confidence 1 1111 3578999999999999555544321 11112222221
Q ss_pred cCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccc
Q psy11047 517 YMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596 (943)
Q Consensus 517 ~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~ 596 (943)
++.|+-|- -..|...|...+++.+..+.
T Consensus 251 ----alGGGmRQ-----sGvLaaaaLval~~~~~~L~------------------------------------------- 278 (384)
T KOG1368|consen 251 ----ALGGGMRQ-----SGVLAAAALVALDENVPLLR------------------------------------------- 278 (384)
T ss_pred ----HhcCchhH-----HHHHHHHHHHHhhcchHHHH-------------------------------------------
Confidence 11222121 12445555555555444321
Q ss_pred cCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCC
Q psy11047 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR 675 (943)
Q Consensus 597 ~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~ 675 (943)
+.+..|+.+++++.+.+++++-.+ .+.|+|...+....--.+.|.+.+.+.|.+.+.... .-+|+++|+.
T Consensus 279 -----~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s----~r~Rivlh~Q 349 (384)
T KOG1368|consen 279 -----ADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGAS----RRIRIVLHHQ 349 (384)
T ss_pred -----HHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeeccc----cceEEEEEEe
Confidence 056789999999999888988765 789999887764433368899999999987765432 2389999999
Q ss_pred CCHHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEIR 689 (943)
Q Consensus 676 tt~edId~ll~~I~ 689 (943)
+|.++++.++..++
T Consensus 350 vt~~~ve~~~~~~~ 363 (384)
T KOG1368|consen 350 VTDEDVEYVKSVLS 363 (384)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999988885
No 43
>KOG1549|consensus
Probab=99.75 E-value=1.1e-16 Score=180.30 Aligned_cols=203 Identities=16% Similarity=0.069 Sum_probs=151.8
Q ss_pred CCCCCceeEEccCCCChHHHHHHHHHHHH----hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEE
Q psy11047 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAI----NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVL 263 (943)
Q Consensus 188 ~~~sPrf~g~~~~~~s~~silgd~L~~al----N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf 263 (943)
+-..|-|+.+...++..+.++..|+.... |+... ....-+-.++| .+++.+|+|+|.++. +.+|
T Consensus 40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E-~aR~~VAklInAd~~----------dIiF 107 (428)
T KOG1549|consen 40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVE-AAREQVAKLINADPS----------DIVF 107 (428)
T ss_pred CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHH-HHHHHHHHHhCCCCC----------cEEE
Confidence 34567788777777777777765554433 44333 12222333456 589999999999875 5999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHH
Q psy11047 264 QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDK 340 (943)
Q Consensus 264 TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~da 340 (943)
|+|+||||.+++..--+ .++ + ..+-+|++.+.+|.|+.+++. + -+..++.||++++|..|.+.
T Consensus 108 ts~ATEs~Nlvl~~v~~---------~~~---~--~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~ 173 (428)
T KOG1549|consen 108 TSGATESNNLVLKGVAR---------FFG---D--KTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISK 173 (428)
T ss_pred eCCchHHHHHHHHHhhc---------ccc---c--cccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHH
Confidence 99999999887764211 011 0 011268889999999999984 4 22589999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
++++|+.+ +.+|...+-++..|.+.|+++|.. +|+++|+ .+|+|||+
T Consensus 174 ~~~~i~~~------T~lv~I~~Vnn~~gv~~Pv~EI~~--------------------icr~~~v-------~v~~DaAQ 220 (428)
T KOG1549|consen 174 LREAIRSK------TRLVSIMHVNNEIGVLQPVKEIVK--------------------ICREEGV-------QVHVDAAQ 220 (428)
T ss_pred HHHhcCCC------ceEEEEEecccCccccccHHHHHH--------------------HhCcCCc-------EEEeehhh
Confidence 99999986 789999999999999999999999 9999999 99999999
Q ss_pred cCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC
Q psy11047 421 LGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN 491 (943)
Q Consensus 421 GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~ 491 (943)
+-+ .. +.+ ++.+ .+|.++++.|||++.+.
T Consensus 221 avG-~i--~vD--------------------------------------V~el-n~D~~s~s~HK~ygp~~ 249 (428)
T KOG1549|consen 221 AVG-KI--PVD--------------------------------------VQEL-NADFLSISAHKIYGPPG 249 (428)
T ss_pred hcC-Cc--ccc--------------------------------------HHHc-CchheeeecccccCCCc
Confidence 877 22 211 1112 68999999999999554
No 44
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.74 E-value=2.6e-15 Score=169.35 Aligned_cols=301 Identities=12% Similarity=0.028 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..+..+.+|+++|.+. .+||+|||++|..++.+.. .+| -.|+++..+|+
T Consensus 65 ~~~l~~~lA~~~g~~~------------~~~~~g~t~a~~~al~~l~----------~~g---------d~Vlv~~~~h~ 113 (387)
T PRK09331 65 IADFHEDLAEFLGMDE------------ARVTHGAREGKFAVMHSLC----------KKG---------DYVVLDGLAHY 113 (387)
T ss_pred HHHHHHHHHHHhCCCc------------EEEeCCHHHHHHHHHHHhc----------CCC---------CEEEECCCchH
Confidence 3345567788899853 5789999999987776531 122 24778899999
Q ss_pred HHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhc-cCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKK-KHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~-kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
|+..++.+.+.+++.+++ +.++.+|+++++++|+.... .+..+.+|+.+..++.+|.+.|+++|++
T Consensus 114 s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~----------- 182 (387)
T PRK09331 114 TSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAK----------- 182 (387)
T ss_pred HHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHH-----------
Confidence 999887654558889988 67899999999999976421 1224778888888889999999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++||+ ++|||+|++.. .+ | .+ ...
T Consensus 183 ---------la~~~g~-------~livD~a~~~g-~~--~---------------------------------~~-~~~- 208 (387)
T PRK09331 183 ---------VAHEYGI-------PFLLNGAYTVG-RM--P---------------------------------VD-GKK- 208 (387)
T ss_pred ---------HHHHcCC-------EEEEECCcccC-Cc--C---------------------------------CC-HHH-
Confidence 9999999 99999999866 32 1 00 011
Q ss_pred hcCCCCeeEEEEcCCCccCccC-cchhhhhcccCccccccC-CCCcccccCccc-cCCCCC-cchHHHHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKN-SGALHRTFNVEPLYLRHE-NSGLAIDYMHWQ-IPLSKR-FRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~-~~~L~~af~~~p~YL~~~-~~g~~~d~~~~t-ie~SRr-frALklW~tLr~~G~~Gl 545 (943)
..+|.+++++|||++..- .+.+ ..++.++..- .....+...... +.++-+ ..+..++.++. -+
T Consensus 209 ----~g~D~~~~s~~K~l~~~~~~G~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~-----~~ 275 (387)
T PRK09331 209 ----LGADFIVGSGHKSMAASAPSGVL----ATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP-----HV 275 (387)
T ss_pred ----cCCCEEEeeCcccccCCCCEEEE----EECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHH-----HH
Confidence 147999999999997221 1111 0011111100 000000000000 111111 12222222221 12
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec-
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA- 624 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~- 624 (943)
.+.++.. . ++.+.++++.+.|.++++++++.
T Consensus 276 ~~~~~~~-----------------------------~-------------------~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 276 VERVKRW-----------------------------D-------------------EEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred HHHHHHH-----------------------------H-------------------HHHHHHHHHHHHHhcCCCEEEecc
Confidence 2222220 0 04667889999999999999985
Q ss_pred -CCCccEEEEEecCCChH-------HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 625 -ARHLGMVVIRLLGENIL-------TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 625 -~~~l~iV~Fr~~g~n~l-------~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+...+++.|........ ...+.+.|.++|.....+ ....++|+ .+...|.+|+++++++|+++..+
T Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~---~~~~i~ri-~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 308 KPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP---GATKEFKL-STYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred CcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc---CCceEEEE-EeccCCHHHHHHHHHHHHHHHHh
Confidence 33577887776532111 245888888888642221 12335555 33336899999999999887554
No 45
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.73 E-value=2.9e-16 Score=192.83 Aligned_cols=361 Identities=13% Similarity=-0.016 Sum_probs=220.3
Q ss_pred ceeEEccCCCChHHHHHHHHHHHH-----hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 193 YMHAYFPALNSYPSLLGDMLSDAI-----NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 193 rf~g~~~~~~s~~silgd~L~~al-----N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
-|+.|-.+++..+..+.+++..++ |+. ..+..+..++.+-..+++.+|++||.++.. ...+||+|+
T Consensus 36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~lga~~~~--------~~VvFtsna 106 (805)
T PLN02724 36 VYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYFNAPPSD--------YACVFTSGA 106 (805)
T ss_pred EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHhCCCccc--------eEEEEeCCh
Confidence 455555444434556666655443 332 223345566777778999999999996530 146999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH---CCccEEEEecC--------CCCCc
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI---GLVNMRYIESD--------DKLSL 336 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L---G~~~v~~Vp~D--------~~grm 336 (943)
|+|+..+... +. + .+| -.|+++...|.|+.-...+ .+..++.++++ ..+.+
T Consensus 107 T~alnlva~~-----l~-~---~~g---------d~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~ 168 (805)
T PLN02724 107 TAALKLVGET-----FP-W---SSE---------SHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSV 168 (805)
T ss_pred HHHHHHHHHH-----CC-C---CCC---------CeEEEeeccccchHHHHHHHHHcCCeEEeccchhcccccccccccc
Confidence 9996644321 10 0 112 2466689999987633222 23578888876 45555
Q ss_pred CH--HHHHHHHHH----hhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHc-------
Q psy11047 337 RG--DKLIEAIER----DKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY------- 403 (943)
Q Consensus 337 D~--daLe~aI~~----d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~------- 403 (943)
+. ++|++.++. ....+..+.+|+.++.++.+|.+.|++.|.. +++..
T Consensus 169 ~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~--------------------~~~~~~~~~~~~ 228 (805)
T PLN02724 169 VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKL--------------------IKDNQHSNFSKS 228 (805)
T ss_pred ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHH--------------------HHHhcccccccC
Confidence 54 567665431 1111223569999999999999999997755 44432
Q ss_pred C-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEc
Q psy11047 404 F-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIV 482 (943)
Q Consensus 404 G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiD 482 (943)
| + +++||||++.+ .. |. . +..+ .+|.++++
T Consensus 229 g~~-------~v~vDaaQ~~g-~~--pi---------------------------------D-----v~~~-~~Dfl~~S 259 (805)
T PLN02724 229 GRW-------MVLLDAAKGCG-TS--PP---------------------------------D-----LSRY-PADFVVVS 259 (805)
T ss_pred cce-------EEEeehhhhcC-CC--CC---------------------------------C-----hhhc-CCCEEEEe
Confidence 2 4 69999999876 32 10 0 1111 58999999
Q ss_pred CCCccCccC-cchh--hh-hc-ccCccccccCCCCcccccCcc--c-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 483 PSSLLRVKN-SGAL--HR-TF-NVEPLYLRHENSGLAIDYMHW--Q-IPLSKRFRALKLWFVIRNFGIKGLQKHIREIFS 554 (943)
Q Consensus 483 pHK~L~vr~-~~~L--~~-af-~~~p~YL~~~~~g~~~d~~~~--t-ie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~ 554 (943)
+|||++.+. -+.| .. .+ ...|.|.+.+..........+ . ....+||++. +....|+.|+.+.++.+.+
T Consensus 260 ~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~G----T~n~~~i~~l~aal~~l~~ 335 (805)
T PLN02724 260 FYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDG----TISFLSIAALRHGFKLLNR 335 (805)
T ss_pred cceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCC----CcchhHHHHHHHHHHHHHH
Confidence 999999322 2222 11 11 234555443210000000001 1 1234566653 7788888888888887532
Q ss_pred cCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC------CeEEecCC--
Q psy11047 555 GLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP------RFEIPAAR-- 626 (943)
Q Consensus 555 ~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p------~~eIl~~~-- 626 (943)
.|++.|.++ ..+|++++.+.|++++ +++++++.
T Consensus 336 ---------------ig~~~I~~~------------------------~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~ 376 (805)
T PLN02724 336 ---------------LTISAIAMH------------------------TWALTHYVANSLRNLKHGNGAPVCVLYGNHTF 376 (805)
T ss_pred ---------------hChHHHHHH------------------------HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCC
Confidence 345555443 4689999999999886 58888643
Q ss_pred ------CccEEEEEecCCC--hH----HHHHHHH--HhccCcEEEeeccc----------------------------CC
Q psy11047 627 ------HLGMVVIRLLGEN--IL----TEKLLKR--LNSKGRLHCVPASL----------------------------RI 664 (943)
Q Consensus 627 ------~l~iV~Fr~~g~n--~l----~~~Ll~~--L~~~G~~~~s~t~~----------------------------~g 664 (943)
..++|+|.+.+.+ .+ ...|++. +.-+...||.+-.. .+
T Consensus 377 ~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~ 456 (805)
T PLN02724 377 KLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHG 456 (805)
T ss_pred CCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecC
Confidence 5789999998754 12 2233322 33333456654211 01
Q ss_pred --CcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 665 --QGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 665 --~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
.+++|+++++++|.+||+++++.|++.-
T Consensus 457 ~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 457 RPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred cccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 3899999999999999999999998864
No 46
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.72 E-value=8.1e-16 Score=190.26 Aligned_cols=319 Identities=14% Similarity=0.044 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChH----HHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS----ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGT----eANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..++-.++.+||++++|++ ..+||+++| +|+++++.+... .+|- ..+-+|
T Consensus 566 ~~~~~~~~r~~la~i~g~~------------~v~f~pnaga~ge~a~~~vi~~~~~---------~~Gd-----~~r~~v 619 (993)
T PLN02414 566 YQEMFEDLGDLLCEITGFD------------SFSLQPNAGAAGEYAGLMVIRAYHL---------SRGD-----HHRNVC 619 (993)
T ss_pred HHHHHHHHHHHHHHHhCCC------------eEEEcCCCcHHHHHHHHHHHHHHHh---------ccCC-----CCCCEE
Confidence 3456668999999999993 478999999 888777765421 0121 134578
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++|..+|.|+..++.+.+.+++.|++|++|.+|+++|++.|+.... .+.+|+.|.++|..|.++|+++|++
T Consensus 620 li~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~------ 690 (993)
T PLN02414 620 IIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICD------ 690 (993)
T ss_pred EeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHH------
Confidence 9999999999998866556999999999999999999999985321 2689999999999999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|+++|. .++||||+..+ ... ...
T Consensus 691 --------------iah~~Ga-------lv~vDgAq~~a-~~~----------------------------------l~~ 714 (993)
T PLN02414 691 --------------IIHDNGG-------QVYMDGANMNA-QVG----------------------------------LTS 714 (993)
T ss_pred --------------HHHHcCC-------EEEEEecCHHh-ccC----------------------------------cCC
Confidence 9999999 99999998654 210 111
Q ss_pred chhhhhcCCCCeeEEEEcCCCccCccCc------chhhhhcccCccccccCC---CCcccccCccccCCCCCc-------
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLRVKNS------GALHRTFNVEPLYLRHEN---SGLAIDYMHWQIPLSKRF------- 528 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~vr~~------~~L~~af~~~p~YL~~~~---~g~~~d~~~~tie~SRrf------- 528 (943)
+ +--.||.+.+++|||++.+.+ +.+.-. ..-.+|+.... .+...+.....--|+++.
T Consensus 715 p------~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~-~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al 787 (993)
T PLN02414 715 P------GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSAL 787 (993)
T ss_pred c------cccCCCEEEecCCccCCcCcccCCCCeeeEEEc-hhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHH
Confidence 1 113689999999998883331 111000 00112222110 010000001111245432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
-++..|..++.+|.+|+++.-+.+ +.+|.
T Consensus 788 ~l~~A~~yi~~lG~~Gl~~~a~~a---------------------------------------------------~~nAn 816 (993)
T PLN02414 788 ILPISYTYIAMMGSEGLTDASKIA---------------------------------------------------ILNAN 816 (993)
T ss_pred HHHHHHHHHHHHCHhHHHHHHHHH---------------------------------------------------HHHHH
Confidence 235778899999999998877773 45677
Q ss_pred HHHHHHhCCCCeEEecC--CCccEEEEEecCCC----hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAA--RHLGMVVIRLLGEN----ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDIT 682 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~--~~l~iV~Fr~~g~n----~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId 682 (943)
|+++.|.+..++....+ +.++=..+.+.... .-...+.++|...|....+ ..+.....+|+...-..+++|||
T Consensus 817 Yl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt-~~~pv~~~lmiepTE~~skeelD 895 (993)
T PLN02414 817 YMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPT-MSWPVPGTLMIEPTESESKAELD 895 (993)
T ss_pred HHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEee-eccccCCEEEEEeeeeCCHHHHH
Confidence 88887766433333332 22222222332111 1237799999977753222 33556789999888999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 683 RDWNEIRNTATEILA 697 (943)
Q Consensus 683 ~ll~~I~~~~~~ll~ 697 (943)
+++++|+.+..++.+
T Consensus 896 rf~~al~~i~~e~~~ 910 (993)
T PLN02414 896 RFCDALISIREEIAD 910 (993)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888765
No 47
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.71 E-value=4.2e-15 Score=168.38 Aligned_cols=301 Identities=15% Similarity=0.089 Sum_probs=194.7
Q ss_pred HHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH---
Q psy11047 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG--- 318 (943)
Q Consensus 242 ~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa--- 318 (943)
+++|.+++ ..+||+|+|+++..++... ++ ++ .++.+|+++..+|.|+..+.
T Consensus 80 ~l~g~~~~----------~v~~~~~~t~~l~~~~~~~----~~------~~------~~~~~i~~~~~~~~s~~~~~~~~ 133 (406)
T TIGR01814 80 RLVGAKED----------EVVVMNTLTINLHLLLASF----YK------PT------PKRYKILLEAKAFPSDHYAIESQ 133 (406)
T ss_pred cccCCCCC----------cEEEeCCchHHHHHHHHHh----cC------Cc------CCccEEEecCCCCChHHHHHHHH
Confidence 88998653 5799999999977665431 10 11 01235778999999865543
Q ss_pred --HHCCccE----EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccc
Q psy11047 319 --LIGLVNM----RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 319 --~LG~~~v----~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L 392 (943)
..|. .+ +.++.+.+|.+|++++++.++... ..+.+|+.++.++.+|.+.|+++|++
T Consensus 134 ~~~~g~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~t~lv~~~~v~~~tG~~~~~~~i~~-------------- 195 (406)
T TIGR01814 134 LQLHGL-TVEESMVQIEPREEETLRLEDILDTIEKNG---DDIAVILLSGVQYYTGQLFDMAAITR-------------- 195 (406)
T ss_pred HHhcCC-CcccceEEeccCCCCccCHHHHHHHHHhcC---CCeEEEEEeccccccceecCHHHHHH--------------
Confidence 2353 44 567777788999999999886431 23678999999999999999999999
Q ss_pred cCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcC
Q psy11047 393 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQG 472 (943)
Q Consensus 393 ~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~G 472 (943)
+|+++|+ +++||++++.+ .. |. . +..
T Consensus 196 ------~~~~~g~-------~~~vD~aq~~G-~~--~i---------------------------------d-----~~~ 221 (406)
T TIGR01814 196 ------AAHAKGA-------LVGFDLAHAVG-NV--PL---------------------------------D-----LHD 221 (406)
T ss_pred ------HHHHcCC-------EEEEEcccccC-Cc--cc---------------------------------c-----ccc
Confidence 9999999 99999999877 32 10 0 111
Q ss_pred CCCeeEEEEcCCCccC-ccCcchh-hh-hc-ccCccccccCCCCc--cccc-CccccCCCCCcchHHHHHHHHHHHHHHH
Q psy11047 473 LGRAQNFTIVPSSLLR-VKNSGAL-HR-TF-NVEPLYLRHENSGL--AIDY-MHWQIPLSKRFRALKLWFVIRNFGIKGL 545 (943)
Q Consensus 473 ie~ADSItiDpHK~L~-vr~~~~L-~~-af-~~~p~YL~~~~~g~--~~d~-~~~tie~SRrfrALklW~tLr~~G~~Gl 545 (943)
..+|.+++++||||+ -+....+ .. .. ...|.+.+...... ..+. ..+.. ..+++++. +....+..++
T Consensus 222 -~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~G----T~~~~~~~~l 295 (406)
T TIGR01814 222 -WGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGL-IPCGFRIS----NPPILSVAAL 295 (406)
T ss_pred -CCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCC-CccceeeC----CccHHHHHHH
Confidence 257999999999975 2221111 01 11 11221111000000 0000 01111 11234431 5566666777
Q ss_pred HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC----CCeE
Q psy11047 546 QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD----PRFE 621 (943)
Q Consensus 546 ~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~----p~~e 621 (943)
.+.++.+.+ .|.+.++++ ..+|++++.+.|.+. ++++
T Consensus 296 ~~al~~~~~---------------~g~~~i~~~------------------------~~~l~~~l~~~l~~~~~~~~~~~ 336 (406)
T TIGR01814 296 RGSLDIFDQ---------------AGMEALRKK------------------------SLLLTDYLEELIKARCGGPPVLT 336 (406)
T ss_pred HHHHHHHHh---------------cCHHHHHHH------------------------HHHHHHHHHHHHHhhcCCCCceE
Confidence 777776422 244444332 467888888888765 4699
Q ss_pred EecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEee-cCCCCHHHHHHHHHHHHHHH
Q psy11047 622 IPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN-FTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 622 Il~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~-~~~tt~edId~ll~~I~~~~ 692 (943)
++.+. ..++|+|+++ .+ .+.+.++|.++|. ++. ..+.+.+|++. +.+||++||+++++.|+++.
T Consensus 337 i~~~~~~~~r~~~v~~~~~-~~--~~~~~~~L~~~gi-~v~---~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 337 IITPRDHAQRGCQLSLTHP-VP--GKAVFQALIKRGV-IGD---KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred EeCCCChhhcCCeEEEEec-CC--HHHHHHHHHHCCE-EEe---ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 98753 3579999986 32 4678888888875 443 23456999987 68999999999999998753
No 48
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.68 E-value=6.3e-15 Score=163.06 Aligned_cols=141 Identities=12% Similarity=0.074 Sum_probs=112.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+.....+..++.+++++++|.+.+ ..+||+|+|+++..++.+.... +.. .++..|+
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~----------~v~~~~g~t~a~~~~l~~l~~~----------~~~----~g~~~vi 92 (353)
T TIGR03235 37 GHNAKKAVERARKQVAEALGADTE----------EVIFTSGATESNNLAILGLARA----------GEQ----KGKKHII 92 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC----------eEEEeCCHHHHHHHHHHHHHHh----------ccc----CCCCeee
Confidence 444566777899999999999753 5899999999998877654321 000 1224688
Q ss_pred ecCCCchHHHHHHH-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 306 CSDQAHSSVEKAGL-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 306 ~S~~aHySv~KAa~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..+|.|+..+.. + -+.+++.|+.+.++.+|+++|+++++++ +.+|+.+..++.+|.+.|+++|.+
T Consensus 93 ~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~------~~lv~~~~~~n~tG~~~~~~~I~~---- 162 (353)
T TIGR03235 93 TSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPD------TLLVSIMHVNNETGSIQPIREIAE---- 162 (353)
T ss_pred EcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCC------CEEEEEEcccCCceeccCHHHHHH----
Confidence 89999999877652 2 2358899999888999999999988643 678889999999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+|||++++.+
T Consensus 163 ----------------l~~~~~~-------~~ivD~a~~~g 180 (353)
T TIGR03235 163 ----------------VLEAHEA-------FFHVDAAQVVG 180 (353)
T ss_pred ----------------HHHHcCC-------EEEEEchhhcC
Confidence 9999999 99999998765
No 49
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.66 E-value=1e-13 Score=154.35 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=183.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.+++++|. + ..++|+|||+++..++.+.. .+| -.|+++..+|++.
T Consensus 48 ~l~~~la~~~g~-~-----------~i~~~~g~t~al~~~l~~~~----------~~g---------d~Vl~~~~~~~~~ 96 (361)
T cd06452 48 DFHHDLAEFLGM-D-----------EARVTPGAREGKFAVMHSLC----------EKG---------DWVVVDGLAHYTS 96 (361)
T ss_pred HHHHHHHHHcCC-c-----------eEEEeCCHHHHHHHHHHHhc----------CCC---------CEEEEcCCcchHH
Confidence 344567888988 2 47899999999887775421 122 2477788999999
Q ss_pred HHHHHHCCccEEEEecCCCC--CcCHHHHHHHHHHhhcc-CCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKL--SLRGDKLIEAIERDKKK-HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~g--rmD~daLe~aI~~d~~k-G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
..++..-+.+++.|+.+.++ .+|+++|++++++.... +..+.+|+.+..++.+|.+.|+++|.+
T Consensus 97 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~------------- 163 (361)
T cd06452 97 YVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAK------------- 163 (361)
T ss_pred HHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHH-------------
Confidence 88775544588889987655 99999999999753221 223678888888889999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|+++|+ ++|+|+||+.. .+ + + + ..
T Consensus 164 -------~~~~~~~-------~vivD~a~~~g-~~--~--------------------------------~-~-~~---- 188 (361)
T cd06452 164 -------VCHEYGV-------PLLLNGAYTVG-RM--P--------------------------------V-S-GK---- 188 (361)
T ss_pred -------HHHHcCC-------eEEEECCcccC-Cc--C--------------------------------C-C-HH----
Confidence 9999999 99999999754 21 0 0 0 00
Q ss_pred CCCCeeEEEEcCCCccCccCc-ch------hhhhcccCccccccCCCCcccccCccccCC-CCC-cchHHHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKNS-GA------LHRTFNVEPLYLRHENSGLAIDYMHWQIPL-SKR-FRALKLWFVIRNFGI 542 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~~-~~------L~~af~~~p~YL~~~~~g~~~d~~~~tie~-SRr-frALklW~tLr~~G~ 542 (943)
.. .+|.++.++||+++..-+ +. +...+.....++ +....+..+ +.+ ..+..++..+..+
T Consensus 189 ~~-~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~-- 256 (361)
T cd06452 189 EL-GADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMF---------KIKEVELLGCTLRGAPLVTLMASFPHV-- 256 (361)
T ss_pred Hc-CCCEEEecCCccccCCCCeEEEEECHHHHHHHhcccccc---------ccceeeeeccccCchHHHHHHHHHHHH--
Confidence 01 469999999999872111 11 111110000010 000001111 111 2233333333221
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.+.+++.. +..+.++++.+.|.++|++++
T Consensus 257 ---~~~~~~~~------------------------------------------------~~~~~~~~l~~~L~~l~g~~v 285 (361)
T cd06452 257 ---KERVKRWD------------------------------------------------EEVEKARWFVAELEKIEGIKQ 285 (361)
T ss_pred ---HHHHHHHH------------------------------------------------HHHHHHHHHHHHHhcCCCeEE
Confidence 22233210 034567889999999999999
Q ss_pred ec--CCCccEEEEEecCCChH-------HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 623 PA--ARHLGMVVIRLLGENIL-------TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 623 l~--~~~l~iV~Fr~~g~n~l-------~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
+. +...|++.|+..+.... ...+.+.|.++|.. +.. .....++|++. ...++++++.++++|+++.
T Consensus 286 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~-~~~--~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 286 LGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIH-GIK--PGLTRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCce-EEc--CCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 74 45678888887532111 12588888888865 221 11234788844 2268899999999998653
No 50
>PLN02721 threonine aldolase
Probab=99.66 E-value=1.3e-14 Score=159.27 Aligned_cols=306 Identities=14% Similarity=0.103 Sum_probs=188.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+..+|...++|.. +++++|.+ .++++++||++|+.++.+... .+| -
T Consensus 36 ~~~~~~~~~l~~~----la~~~~~~------------~~~~~~~Gs~a~~~~l~~~~~---------~~g---------d 81 (353)
T PLN02721 36 LGYDPTALRLEEE----MAKIFGKE------------AALFVPSGTMGNLISVLVHCD---------VRG---------S 81 (353)
T ss_pred cCCCHHHHHHHHH----HHHHhCCc------------eeEEecCccHHHHHHHHHHcc---------CCC---------C
Confidence 4456666666665 56777764 368899999999877765321 022 2
Q ss_pred EEEecCCCchHHHHH---HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccC-CCcEEEEEecCC-Cccccccc---HH
Q psy11047 303 VAYCSDQAHSSVEKA---GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKH-LIPFFIFSGLAL-PAFLVVDS---YC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KA---a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG-~~P~~VVaTaGT-T~tGaIDp---L~ 374 (943)
.|++++.+|+++.++ +...+.+++.+|.++++.+|+++|++.|++....+ ..+.+|+.+.-. +.+|.+-| ++
T Consensus 82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~ 161 (353)
T PLN02721 82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTD 161 (353)
T ss_pred eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHH
Confidence 377788999988874 33445678889988889999999999997542211 125556654433 33566544 78
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|.+ +|++||+ |+|+|+|+... .+. ..
T Consensus 162 ~l~~--------------------l~~~~g~-------~livD~a~~~~-~~~-~~------------------------ 188 (353)
T PLN02721 162 KVGE--------------------LAKRHGL-------KLHIDGARIFN-ASV-AL------------------------ 188 (353)
T ss_pred HHHH--------------------HHHHcCC-------EEEEEchhhhc-chh-hh------------------------
Confidence 8888 9999999 99999997432 110 00
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLW 534 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW 534 (943)
..+ .... ++.+|++++++|||++.+-...+ ..++.++.... .......++-+. +
T Consensus 189 -------~~~-~~~~---~~~~d~~~~s~sK~l~~~~G~~~----~~~~~~~~~~~------~~~~~~~~~~~~-----~ 242 (353)
T PLN02721 189 -------GVP-VHRL---VKAADSVSVCLSKGLGAPVGSVI----VGSKSFIRKAK------RLRKTLGGGMRQ-----V 242 (353)
T ss_pred -------CCC-HHHH---hhhCCEEEEecccccCCceeeEE----ecCHHHHHhHH------HHHHhcCCCeeh-----h
Confidence 000 0111 24679999999999884322211 01122211100 000000111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHH
Q psy11047 535 FVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 614 (943)
Q Consensus 535 ~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L 614 (943)
..+...+..+++++++++-. ..++++++.+.|
T Consensus 243 ~~~~~~~~~~l~~~~~~~~~------------------------------------------------~~~~~~~l~~~L 274 (353)
T PLN02721 243 GVLAAAALVALQENVPKLED------------------------------------------------DHKKAKLLAEGL 274 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------------------------------------HHHHHHHHHHHH
Confidence 11222334445444443110 235677888889
Q ss_pred hCCCCeEE-ecCCCccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 615 LGDPRFEI-PAARHLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 615 ~~~p~~eI-l~~~~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
.+.+++++ +.++..|++.|++.... .....+.++|.++|.. +.+ .+..++|++++..++++|++++++.|+++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~-v~~---~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 275 NQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVL-LMP---GNSSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred HhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcE-Eec---CCCceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 88888876 66777889999986421 1257888899887764 433 245689998888999999999999998865
Q ss_pred H
Q psy11047 693 T 693 (943)
Q Consensus 693 ~ 693 (943)
.
T Consensus 351 ~ 351 (353)
T PLN02721 351 L 351 (353)
T ss_pred h
Confidence 3
No 51
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.65 E-value=5.7e-15 Score=161.10 Aligned_cols=292 Identities=12% Similarity=0.068 Sum_probs=174.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+++++++| ++ ..++|+|||++|..++.+.. .+| -.|+++..+|+++
T Consensus 36 ~l~~~~a~~~g-~~-----------~~~~~~~gt~a~~~~~~~l~----------~~g---------d~v~~~~~~~~~~ 84 (338)
T cd06502 36 KLEARAAELFG-KE-----------AALFVPSGTAANQLALAAHT----------QPG---------GSVICHETAHIYT 84 (338)
T ss_pred HHHHHHHHHhC-CC-----------eEEEecCchHHHHHHHHHhc----------CCC---------CeEEEecCcceee
Confidence 44568899998 42 58999999999887766421 122 2467889999987
Q ss_pred HHH---HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccC-CCcEEEEEecCCCcccc---cccHHHhhhhcccccccc
Q psy11047 315 EKA---GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKH-LIPFFIFSGLALPAFLV---VDSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 315 ~KA---a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG-~~P~~VVaTaGTT~tGa---IDpL~eIa~~~~~~d~~~ 387 (943)
.++ +.+.+.+++.++.+. +.+|.++|++++++..+++ ..+.+|+.+..++ +|. .+++++|.+
T Consensus 85 ~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n-~g~~~~~~~l~~i~~--------- 153 (338)
T cd06502 85 DEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE-GGTVYPLDELKAISA--------- 153 (338)
T ss_pred ecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecC-CccccCHHHHHHHHH---------
Confidence 664 234445788888865 8899999999997532221 1255666555443 564 466788888
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+|++||+ |+|+|+||..+ ... ..| . ...
T Consensus 154 -----------~~~~~~~-------~livDea~~~~-~~~-----------------------------~~~---~-~~~ 181 (338)
T cd06502 154 -----------LAKENGL-------PLHLDGARLAN-AAA-----------------------------ALG---V-ALK 181 (338)
T ss_pred -----------HHHHcCC-------eEeechHHHHH-HHH-----------------------------hcC---C-CHH
Confidence 9999999 99999998533 110 000 0 111
Q ss_pred hhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHH
Q psy11047 468 LRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 468 ~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~ 547 (943)
.. ...+|.++.++|||++......+ ..++..+.. .........++-+..++..+..+..+...++.+
T Consensus 182 ~~---~~~~d~~~~s~sK~~~~~~g~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~ 248 (338)
T cd06502 182 TY---KSGVDSVSFCLSKGGGAPVGAVV----VGNRDFIAR------ARRRRKQAGGGMRQSGFLAAAGLAALENDLWLR 248 (338)
T ss_pred HH---HhcCCEEEEeccccCCCccceEE----ECCHHHHHH------HHHHHHHhCCChhhHHHHHHHHHHHhcCchHHH
Confidence 11 13578999999999985432211 001111100 000000000111111222222233232223333
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
.+++ ..++++++.+.|++.+ +. +.++.
T Consensus 249 ~~~~---------------------------------------------------~~~~~~~l~~~L~~~~-~~-~~~~~ 275 (338)
T cd06502 249 RLRH---------------------------------------------------DHEMARRLAEALEELG-GL-ESEVQ 275 (338)
T ss_pred HHHH---------------------------------------------------HHHHHHHHHHHHHhcC-CC-ccccc
Confidence 3333 2456788888888774 33 44678
Q ss_pred ccEEEEEecCCChHHHHHHHHHh---ccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLN---SKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~---~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
.|++++++.+.+....++.+++. ++|.+ +.+. +..++|++.+..+|.+|++++++.+++
T Consensus 276 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~-~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 276 TNIVLLDPVEANAVFVELSKEAIERRGEGVL-FYAW---GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CCeEEEecCCccHHHHHHHHHHHHhhhCCEE-EEec---CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 99999998654555556666654 56754 3332 226899999999999999999998864
No 52
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.63 E-value=1.4e-13 Score=168.39 Aligned_cols=316 Identities=13% Similarity=0.053 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC-ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT-TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs-GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
++-.+.-.|+++++|++.. .+.. +|+.+++.+|++-|.+... +| -..+-+|++|..
T Consensus 543 q~i~elq~~l~eLtGmd~~------------Sl~p~sGA~gE~A~Lmair~yh~~------~G-----e~~r~~vLIp~s 599 (954)
T PRK12566 543 AMIDELEAWLCAITGFDAI------------CMQPNSGAQGEYAGLLAIRRYHRS------RG-----QSQRDICLIPSS 599 (954)
T ss_pred HHHHHHHHHHHHHHCCCeE------------eecCCchHHHHHHHHHHHHHHHHh------cC-----CCCCCEEEeccc
Confidence 3333444799999999752 4555 7888999998887754321 12 013456889999
Q ss_pred CchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
+|.+..-++.+.+.+++.|++|++|.+|+++|++.|++.. ..+.+|+.|..++..+..+|+++|++
T Consensus 600 aHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~----------- 665 (954)
T PRK12566 600 AHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICE----------- 665 (954)
T ss_pred ccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHH-----------
Confidence 9988765565555699999999999999999999997321 13678888999888878889999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+++++|. .++||||..-+ ... +..+
T Consensus 666 ---------iah~~Ga-------lv~vDgA~~~a-~~~----------------------------------l~~P---- 690 (954)
T PRK12566 666 ---------VVHQHGG-------QVYMDGANLNA-QVG----------------------------------LARP---- 690 (954)
T ss_pred ---------HHHHcCC-------EEEEEeeChhh-ccC----------------------------------CCCh----
Confidence 9999999 89999998533 110 1111
Q ss_pred hcCCCCeeEEEEcCCCccCccCcchh--hhhcccC---ccccccCCCCccccc-CccccCCCCC----cc---hHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKNSGAL--HRTFNVE---PLYLRHENSGLAIDY-MHWQIPLSKR----FR---ALKLWFV 536 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~~~~L--~~af~~~---p~YL~~~~~g~~~d~-~~~tie~SRr----fr---ALklW~t 536 (943)
|--.||.+.+++|||++.+...-. ...+... .+|+..-. + .|. +...-+++.. .. ++..|..
T Consensus 691 --g~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P-~--~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Y 765 (954)
T PRK12566 691 --ADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHP-V--VPVEGPDPNNGAVSAAPWGSASILPISWMY 765 (954)
T ss_pred --hhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCC-C--cCCCCCCCCCCceeecccchHHHHHHHHHH
Confidence 113789999999999983222110 0111111 13444210 0 000 0000022221 12 4577888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhC
Q psy11047 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 616 (943)
Q Consensus 537 Lr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~ 616 (943)
++.+|.+ +.+.-.. .+.+|.|+++.|.+
T Consensus 766 i~~lG~e-Lk~aa~~---------------------------------------------------ailnAnYla~rL~~ 793 (954)
T PRK12566 766 IAMMGPQ-LADASEV---------------------------------------------------AILSANYLANQLGG 793 (954)
T ss_pred HHHHCHH-HHHHHHH---------------------------------------------------HHHHHHHHHHHhHh
Confidence 8888876 4433322 35577888887766
Q ss_pred CCCeEEecCC-------CccEEEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 617 DPRFEIPAAR-------HLGMVVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 617 ~p~~eIl~~~-------~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
. +++...+ +..+.++.+++. ..-...+.++|...|. +.....+.....+|+...-..+++|||+++++|
T Consensus 794 ~--~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gi-hapt~~fPv~~~LmIepTE~eskeEIDrf~eAL 870 (954)
T PRK12566 794 A--FPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGF-HAPTMSFPVPGTLMVEPTESESKAELDRFVEAM 870 (954)
T ss_pred h--CCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCc-EEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHH
Confidence 3 4444321 233444444421 1113678999987775 332234556789999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy11047 689 RNTATEILAE 698 (943)
Q Consensus 689 ~~~~~~ll~~ 698 (943)
+.+.+++.+-
T Consensus 871 ~~I~~e~~~v 880 (954)
T PRK12566 871 LSIRAEIGKV 880 (954)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 53
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.62 E-value=1.9e-13 Score=149.76 Aligned_cols=305 Identities=10% Similarity=0.008 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.++-..+.+.+++++|.++.. ...++|+|||+++..++.... . + ++-+++.+..
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~--------~~i~~~~~gt~~l~~~~~~~~----~------~--------~~~vi~~~~~ 83 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNH--------TCVLLQGSGTFAVEATIGSLV----P------R--------DGKLLVLING 83 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCC--------cEEEEeCCcHHHHHHHHHhcc----C------C--------CCeEEEECCC
Confidence 456667899999999998641 246789999999977765421 0 1 1223444444
Q ss_pred CchH-HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 310 AHSS-VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 310 aHyS-v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.+.+ +..++...+.+++.++.+.++.+|+++++++++++. .+.+++.++..|.+|.+.|+++|++
T Consensus 84 ~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~~G~~~~~~~i~~---------- 149 (355)
T TIGR03301 84 AYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADP----DITHVATVHHETTTGILNPLEAIAK---------- 149 (355)
T ss_pred chhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCC----CceEEEEEecCCcccchhHHHHHHH----------
Confidence 4333 345554334478889988788999999999997642 2457777788888999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|++||+ ++++|++++.. .. + . ...
T Consensus 150 ----------l~~~~~~-------~livD~~~s~g-~~--~---------------------------------~-~~~- 174 (355)
T TIGR03301 150 ----------VARSHGA-------VLIVDAMSSFG-AI--P---------------------------------I-DIE- 174 (355)
T ss_pred ----------HHHHcCC-------EEEEEeccccC-Cc--c---------------------------------c-chh-
Confidence 9999999 99999875432 11 0 0 011
Q ss_pred hhcCCCCeeEEEEcCCCccC-cc-------Ccchhhhhcc-cCccccccCCCCcccccCccccCCCCCcc-h----HHHH
Q psy11047 469 RIQGLGRAQNFTIVPSSLLR-VK-------NSGALHRTFN-VEPLYLRHENSGLAIDYMHWQIPLSKRFR-A----LKLW 534 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~-vr-------~~~~L~~af~-~~p~YL~~~~~g~~~d~~~~tie~SRrfr-A----LklW 534 (943)
. -.+|.+..++|||++ .. ++..+ +.+. ....|.... .. ++..+.-.+..++. + ..+.
T Consensus 175 ---~-~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~t~~~~~~~a~~ 245 (355)
T TIGR03301 175 ---E-LDVDALIASANKCLEGVPGFGFVIARRDLL-EASAGNARSLYLDL--YD--QWAYMEKTGKWRFTPPTHTVYAFA 245 (355)
T ss_pred ---h-cCccEEEecCCcccccCCceeEEEECHHHH-HHhhCCCCCceeeH--HH--HHHHhhhcCCCCCCCcHHHHHHHH
Confidence 1 146999999999875 11 11111 1111 000010000 00 00000001111111 1 1112
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHH
Q psy11047 535 FVIRNFGIKG-LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 613 (943)
Q Consensus 535 ~tLr~~G~~G-l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~ 613 (943)
.+++.+-.+| +.+.+++ ..++++++.+.
T Consensus 246 ~al~~~~~~g~~~~~~~~---------------------------------------------------~~~~~~~~~~~ 274 (355)
T TIGR03301 246 QALEELEAEGGVPARIAR---------------------------------------------------YRRNRELLVDG 274 (355)
T ss_pred HHHHHHHHcccHHHHHHH---------------------------------------------------HHHHHHHHHHH
Confidence 2222222222 2222222 24566777777
Q ss_pred HhCCCCeEEecCC--Ccc-EEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHH
Q psy11047 614 VLGDPRFEIPAAR--HLG-MVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIR 689 (943)
Q Consensus 614 L~~~p~~eIl~~~--~l~-iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~ 689 (943)
|.+. ++++..++ ..+ +++|++++.. ....++.++|.++|.+ +.+.......++|++++..++.+|++++++.|+
T Consensus 275 L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~ 352 (355)
T TIGR03301 275 LRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFV-IYPGKLTLADTFRIGTIGEIDAADIERLLEAIK 352 (355)
T ss_pred HHHc-CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEE-EECCccccccEEEEecCCCCCHHHHHHHHHHHH
Confidence 7765 77876543 233 4678876421 2246788889888854 444322223689998888899999999999997
Q ss_pred HH
Q psy11047 690 NT 691 (943)
Q Consensus 690 ~~ 691 (943)
++
T Consensus 353 ~~ 354 (355)
T TIGR03301 353 DA 354 (355)
T ss_pred hh
Confidence 64
No 54
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.60 E-value=2.8e-13 Score=150.54 Aligned_cols=314 Identities=11% Similarity=0.055 Sum_probs=188.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+....+-..+++.+++++|.++.. ...+||+|||+++..++.+.- .+ ++-++++
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~--------~~i~~t~~~t~al~~~~~~l~----------~~--------~~~vlv~ 84 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGY--------TSVLLQGSGTFAVEAVIGSAV----------PK--------DGKLLVV 84 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEcCCCHHHHHHHHHhcC----------CC--------CCeEEEE
Confidence 344445556899999999997531 247899999999987765421 01 2234555
Q ss_pred cCCCchH-HHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 307 SDQAHSS-VEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 307 S~~aHyS-v~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
+...|.+ +.+.+. .| .+++.|+++.++.+|+++++++|+.+.. +.+|+.++..+.+|.+.|+++|++
T Consensus 85 ~~~~~~~~~~~~a~~~g-~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~i~~I~~------ 153 (363)
T TIGR02326 85 INGAYGARIVQIAEYLG-IPHHVVDTGEVEPPDVVEVEAILAADPA----ITHIALVHCETTTGILNPIEAVAK------ 153 (363)
T ss_pred eCChhhHHHHHHHHHcC-CceEEEeCCCCCCCCHHHHHHHHhhCCC----ccEEEEEeecCCccccCcHHHHHH------
Confidence 6656655 345553 45 4788899988999999999999986421 346777888999999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|++||+ +++||++++.. .. | .+
T Consensus 154 --------------l~~~~g~-------~livD~~~~~g-~~--~---------------------------------~~ 176 (363)
T TIGR02326 154 --------------LAHRHGK-------VTIVDAMSSFG-GI--P---------------------------------ID 176 (363)
T ss_pred --------------HHHHcCC-------EEEEEcccccc-Cc--c---------------------------------cc
Confidence 9999999 99999987543 21 1 00
Q ss_pred chhhhhcCCCCeeEEEEcCCCccCcc-Ccchhh---hhcccCccccccCCCCcccccC-cc---c-cCCCCCcchHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLRVK-NSGALH---RTFNVEPLYLRHENSGLAIDYM-HW---Q-IPLSKRFRALKLWF 535 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~vr-~~~~L~---~af~~~p~YL~~~~~g~~~d~~-~~---t-ie~SRrfrALklW~ 535 (943)
+..+ .+|.+..++|||++.. .-+.+. +.+. ++.....+...+.. .| . -.+.++|.+
T Consensus 177 -----~~~~-~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~----- 241 (363)
T TIGR02326 177 -----IAEL-HIDYLISSANKCIQGVPGFGFVIARQAELA----ACKGNARSLSLDLYDQWRCMEDNHGKWRFTS----- 241 (363)
T ss_pred -----hhhc-CccEEEecCccccccCCcceEEEECHHHHH----HhhcCCCceeecHHHHHHHHhccCCCCCCCC-----
Confidence 1111 4799999999998621 111110 0000 00000000000000 00 0 012233322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
...+..++.+.++.+++. .|++.++++ ..++++++.+.|+
T Consensus 242 --~~~~~~al~~al~~l~~~--------------g~~~~~~~~------------------------~~~~~~~l~~~L~ 281 (363)
T TIGR02326 242 --PTHVVHAFAQALLELEKE--------------GGVAARHQR------------------------YQQNQKTLVAGMR 281 (363)
T ss_pred --cHHHHHHHHHHHHHHHHh--------------hCHHHHHHH------------------------HHHHHHHHHHHHH
Confidence 222333434444432210 011111111 3566778888887
Q ss_pred CCCCeEEecCC--CccE-EEEEecCC-ChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 616 GDPRFEIPAAR--HLGM-VVIRLLGE-NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 616 ~~p~~eIl~~~--~l~i-V~Fr~~g~-n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+. +++++.++ ..++ ++|++.+. ......+.+.|.++|.. +.+........+|++.+.+++.+|++++++.|+++
T Consensus 282 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~-v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 282 AL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFV-IYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKA 359 (363)
T ss_pred Hc-CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEE-EECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 76 77876543 4554 57887642 11246788888888754 44332223468999776678999999999998875
No 55
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.60 E-value=4.4e-13 Score=152.25 Aligned_cols=315 Identities=10% Similarity=0.011 Sum_probs=198.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++...++-..+.+++++++|.+.. ...++++|||+++..++... + .+| -.|+
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~~~---------~~vi~~~~gt~a~~~a~~~~----~------~~G---------d~Vl 88 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTKSG---------TPFIFPTTGTGAWESALTNT----L------SPG---------DKVV 88 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHhc----C------CCC---------CEEE
Confidence 677778888999999999998643 25789999999986665431 1 122 2366
Q ss_pred ecCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 306 CSDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 306 ~S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..|++. ...+..-+.+++.++.+..+.+|+++++++|+.+.+ ..+.+|+.++..|.+|.+-|+++|++
T Consensus 89 v~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~--~~~k~v~~~~~~~~tG~~~~~~~i~~----- 161 (401)
T PLN02409 89 SFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTN--HKIKAVCVVHNETSTGVTNDLAGVRK----- 161 (401)
T ss_pred EeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcC--CCccEEEEEeecccccccCCHHHHHH-----
Confidence 677889875 344433234889999876667899999999986421 12678888999999999999999999
Q ss_pred ccccccccccCchHHH--HHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 384 GLGFYKMKLQTNFPNF--ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 384 d~~~~~i~L~RrfR~i--ar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+ |+++|+ +++||++++.. .. |
T Consensus 162 ---------------l~~~~~~g~-------~~vvD~v~s~g-~~--~-------------------------------- 184 (401)
T PLN02409 162 ---------------LLDCAQHPA-------LLLVDGVSSIG-AL--D-------------------------------- 184 (401)
T ss_pred ---------------HHhhhccCc-------EEEEEcccccC-Cc--c--------------------------------
Confidence 9 999999 99999998744 22 1
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccC--------cchhhhhcc--cCccccccCCCCcccccCccccCCCC-Ccch
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKN--------SGALHRTFN--VEPLYLRHENSGLAIDYMHWQIPLSK-RFRA 530 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~--------~~~L~~af~--~~p~YL~~~~~g~~~d~~~~tie~SR-rfrA 530 (943)
.. +.. -.+|.+.+++|||++.+. +..+..... ..+.|+... ....+.-.+.+ .+
T Consensus 185 -id-----~~~-~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~-- 249 (401)
T PLN02409 185 -FR-----MDE-WGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWA------DYLKFYKLGTYWPY-- 249 (401)
T ss_pred -cc-----ccc-cCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHH------HHHHHHhcCCCCCC--
Confidence 00 011 157999999999997221 111111100 011121100 00000001111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 531 LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 531 LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
+....+..++.+.++.+.+ .|++.++++ +.++++++
T Consensus 250 -----Tp~~~~~~al~~al~~~~~---------------~G~e~i~~~------------------------~~~l~~~l 285 (401)
T PLN02409 250 -----TPSIQLLYGLRAALDLIFE---------------EGLENVIAR------------------------HARLGEAT 285 (401)
T ss_pred -----CccHHHHHHHHHHHHHHHH---------------hhHHHHHHH------------------------HHHHHHHH
Confidence 2233334455555554321 233333332 46788899
Q ss_pred HHHHhCCCCeEEecCC---Cc-cEEEEEec-CCChHHHHHHHHHhccCcEEEeecccC-CCcEEEEeecCCCCHHHHHHH
Q psy11047 611 EALVLGDPRFEIPAAR---HL-GMVVIRLL-GENILTEKLLKRLNSKGRLHCVPASLR-IQGLGRAQNFTRTTNDDITRD 684 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~---~l-~iV~Fr~~-g~n~l~~~Ll~~L~~~G~~~~s~t~~~-g~~~lR~v~~~~tt~edId~l 684 (943)
.+.|.+. +++++.+. .. .+++|+++ +.+ ...+.++|..+..+.+...... ...++|+....+++.+||..+
T Consensus 286 ~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~--~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~ 362 (401)
T PLN02409 286 RLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGID--SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGA 362 (401)
T ss_pred HHHHHHc-CCeeccCChhhcccceEEEeCCCCCC--HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHH
Confidence 9988876 78988642 23 56678874 333 3567777655444555543222 346899977778899999999
Q ss_pred HHHHHHHHHH
Q psy11047 685 WNEIRNTATE 694 (943)
Q Consensus 685 l~~I~~~~~~ 694 (943)
++++.++..+
T Consensus 363 ~~~~~~~l~~ 372 (401)
T PLN02409 363 LAGVEMVLKD 372 (401)
T ss_pred HHHHHHHHHH
Confidence 9999886443
No 56
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.60 E-value=1.2e-13 Score=159.34 Aligned_cols=308 Identities=15% Similarity=0.070 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEc---CChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQ---TTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfT---sGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.......+|..+++.++++||.+.+ .-+++ +|||+||+.++.+- + .+|
T Consensus 74 g~~~~~~iE~~ar~~~a~lf~a~~~----------~~~~~~~~~sgt~an~~v~~al----~------~~g--------- 124 (452)
T PTZ00094 74 GNEVVDKIENLCQKRALEAFGLDPE----------EWGVNVQPYSGSPANFAVYTAL----L------QPH--------- 124 (452)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcc----------cceeecCCCchHHHHHHHHHHh----c------CCC---------
Confidence 3445678898899999999998653 22345 89999998877652 1 122
Q ss_pred eEEEecCCCchHHHHHH-HH--------CC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 302 LVAYCSDQAHSSVEKAG-LI--------GL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa-~L--------G~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
-.|+++...|.+....+ .+ |. ..+..++++.+|.+|.++|++.++... |.+|+.+ .+++|.+-
T Consensus 125 d~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~-----~~lvi~~--~s~~g~~~ 197 (452)
T PTZ00094 125 DRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR-----PKLIIAG--ASAYPRDI 197 (452)
T ss_pred CEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC-----CCEEEEe--CCCCCCcc
Confidence 25778888997764433 11 10 133455677789999999999997531 4344432 44699999
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHH
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKL 451 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kl 451 (943)
|+++|++ +|+++|. ++|||+|++.+ .+ +.+
T Consensus 198 di~~I~~--------------------i~~~~ga-------~l~vDaaq~~G-~i--~~~-------------------- 227 (452)
T PTZ00094 198 DYKRFRE--------------------ICDSVGA-------YLMADIAHTSG-LV--AAG-------------------- 227 (452)
T ss_pred CHHHHHH--------------------HHHHcCC-------EEEEeccchhc-cc--cCC--------------------
Confidence 9999999 9999999 99999999877 32 100
Q ss_pred HHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcch
Q psy11047 452 LKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRA 530 (943)
Q Consensus 452 l~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrA 530 (943)
..+ ..+.++|.+++++|||++ .+ +..+.-. ....+++... ... .....+++
T Consensus 228 ----------~~~------~~~~~~D~l~~S~hK~l~GP~-Gg~l~~~-~~~~~~l~~~-~~~---~~~p~~~G------ 279 (452)
T PTZ00094 228 ----------VLP------SPFPYADVVTTTTHKSLRGPR-SGLIFYR-KKVKPDIENK-INE---AVFPGLQG------ 279 (452)
T ss_pred ----------CCC------CCCCCCcEEEcCCccCCCCCC-ceEEEEe-cccchHHHHh-hcc---ccCCCCCC------
Confidence 001 012368999999999986 33 2222000 0000011100 000 00001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 531 LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 531 LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
+....++.|+...++.+.. .+.+.+++ +..+++++|
T Consensus 280 -----~~~~~~iaal~~al~~~~~---------------~~~~~~~~------------------------~i~~l~~~l 315 (452)
T PTZ00094 280 -----GPHNHQIAAIAVQLKEVQS---------------PEWKEYAK------------------------QVLKNAKAL 315 (452)
T ss_pred -----CchHHHHHHHHHHHHHHhC---------------hhHHHHHH------------------------HHHHHHHHH
Confidence 1233355566666665321 00111111 135688899
Q ss_pred HHHHhCCCCeEEecC---CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc------CCCcEEEEeecCCCC----
Q psy11047 611 EALVLGDPRFEIPAA---RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL------RIQGLGRAQNFTRTT---- 677 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~---~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~------~g~~~lR~v~~~~tt---- 677 (943)
.+.|.+. ++++..+ .+..+|.|...+.+ .+.+...|.+.|. +++...+ ...+.+|++++..||
T Consensus 316 ~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~--~~~~~~~L~~~gI-~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~ 391 (452)
T PTZ00094 316 AAALEKR-GYDLVTGGTDNHLVLVDLRPFGIT--GSKMEKLLDAVNI-SVNKNTIPGDKSALNPSGVRLGTPALTTRGAK 391 (452)
T ss_pred HHHHHhC-CcEEecCCCCCceEeecCCcCCCC--HHHHHHHHHHCCc-EEecccCCCCCcCCCCCeEEECCHHHHhCCCC
Confidence 9888775 8888742 34566677665543 4567777776675 4532211 124789998888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11047 678 NDDITRDWNEIRNTATE 694 (943)
Q Consensus 678 ~edId~ll~~I~~~~~~ 694 (943)
++||+++++.|.++...
T Consensus 392 ~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 392 EKDFKFVADFLDRAVKL 408 (452)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888765
No 57
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.59 E-value=4e-13 Score=145.27 Aligned_cols=329 Identities=12% Similarity=0.011 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
++..+.....+.+...+...+...++|..+.++++..+|.+.. ....++|+|||+++..++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--------~~~~~~~~~~t~a~~~~~~~~~------- 80 (350)
T cd00609 16 VLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVP--------PEEIVVTNGAQEALSLLLRALL------- 80 (350)
T ss_pred HHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------cceEEEecCcHHHHHHHHHHhC-------
Confidence 3333333455666667777788899999999999998886433 1357899999999877666532
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCH--HHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRG--DKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~--daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+ ...|+++..+|.++..++.....+++.++.++++.++. +.++..+.. .+.+|+.+..+
T Consensus 81 ---~~---------g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~ 142 (350)
T cd00609 81 ---NP---------GDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPN 142 (350)
T ss_pred ---CC---------CCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCc------cceEEEEECCC
Confidence 11 23588899999999999865446899999988888876 444443322 36788888899
Q ss_pred CcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecch
Q psy11047 365 PAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE 444 (943)
Q Consensus 365 T~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ 444 (943)
+.+|.+.|++++.+ +..+|+++|+ |+++|+|++++ .+. ..
T Consensus 143 ~~tG~~~~~~~l~~-----------------l~~~~~~~~~-------~~ivD~a~~~~-~~~-~~-------------- 182 (350)
T cd00609 143 NPTGAVLSEEELEE-----------------LAELAKKHGI-------LIISDEAYAEL-VYD-GE-------------- 182 (350)
T ss_pred CCCCcccCHHHHHH-----------------HHHHHHhCCe-------EEEEecchhhc-eeC-Cc--------------
Confidence 99999998776653 1119999999 99999999876 220 00
Q ss_pred hhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCc-cccccCCCCcccccCccccC
Q psy11047 445 NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEP-LYLRHENSGLAIDYMHWQIP 523 (943)
Q Consensus 445 ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p-~YL~~~~~g~~~d~~~~tie 523 (943)
.... . . ..+...+|-+..+.||+++..... + ..+.... .++..-. ....+...
T Consensus 183 ----------------~~~~-~-~-~~~~~~~~~~~~s~~K~~~~~g~~-~-G~i~~~~~~~~~~~~-----~~~~~~~~ 236 (350)
T cd00609 183 ----------------PPPA-L-A-LLDAYERVIVLRSFSKTFGLPGLR-I-GYLIAPPEELLERLK-----KLLPYTTS 236 (350)
T ss_pred ----------------cccc-c-c-CcCccCcEEEEeecccccCCcccc-e-EEEecCHHHHHHHHH-----HHHHhccc
Confidence 0000 0 0 011234688888999998722110 0 0000111 1111000 00000000
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHH
Q psy11047 524 LSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 603 (943)
Q Consensus 524 ~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~ 603 (943)
++.......++..++... +++.+..++ .
T Consensus 237 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~---------------------------------------------------~ 264 (350)
T cd00609 237 GPSTLSQAAAAAALDDGE-EHLEELRER---------------------------------------------------Y 264 (350)
T ss_pred CCChHHHHHHHHHHhCcH-HHHHHHHHH---------------------------------------------------H
Confidence 111111222232333221 233332222 2
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc--CCCcEEEEeecCCCCHHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL--RIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~--~g~~~lR~v~~~~tt~edI 681 (943)
.++++++.+.|.+.+...+..+...+.+.|++.+.. ....+.+.+.+.|......... .+..++|++++.. .+||
T Consensus 265 ~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i 341 (350)
T cd00609 265 RRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD-DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEEL 341 (350)
T ss_pred HHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC-hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHH
Confidence 456778888888776655434455666777775431 2345556666767544332222 2567999966555 9999
Q ss_pred HHHHHHHH
Q psy11047 682 TRDWNEIR 689 (943)
Q Consensus 682 d~ll~~I~ 689 (943)
++++++|+
T Consensus 342 ~~~~~al~ 349 (350)
T cd00609 342 EEALERLA 349 (350)
T ss_pred HHHHHHhh
Confidence 99999886
No 58
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.59 E-value=2.5e-13 Score=149.12 Aligned_cols=305 Identities=15% Similarity=0.157 Sum_probs=182.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+...|...++|. .+++++|.+ ..++|+|||+|+..++.+.+. .+ .-
T Consensus 14 ~~~~~~~~~~~~----~la~~~~~~------------~~~~~~sgt~al~~~l~~l~~---------~~---------gd 59 (352)
T cd00616 14 LTLGPKVREFEK----AFAEYLGVK------------YAVAVSSGTAALHLALRALGI---------GP---------GD 59 (352)
T ss_pred ccCCHHHHHHHH----HHHHHhCCC------------eEEEECCHHHHHHHHHHHcCC---------CC---------CC
Confidence 345677777766 567788853 368999999999888765310 12 23
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+++..+|.+...++...+.+++.++++. ++.+|+++|++.++.+ +.+|+.+. .+|.+.|+++|.+
T Consensus 60 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~---~~G~~~~~~~i~~--- 127 (352)
T cd00616 60 EVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPR------TKAIIPVH---LYGNPADMDAIMA--- 127 (352)
T ss_pred EEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcC------CeEEEEEC---CCCCcCCHHHHHH---
Confidence 578899999999888854445788888876 7899999999988543 45555543 5788999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRL 461 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~ 461 (943)
+|+++|+ ++++|+|++.+..+
T Consensus 128 -----------------l~~~~~i-------~li~D~a~~~g~~~----------------------------------- 148 (352)
T cd00616 128 -----------------IAKRHGL-------PVIEDAAQALGATY----------------------------------- 148 (352)
T ss_pred -----------------HHHHcCC-------eEEEECCCCCCCeE-----------------------------------
Confidence 9999999 99999998754111
Q ss_pred cccchhhhhcCCCCeeEEEEcCCCccCccCcchhh-h--hcccCccccccCCC-CcccccCccccCCCCCcchHHHHHHH
Q psy11047 462 HCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH-R--TFNVEPLYLRHENS-GLAIDYMHWQIPLSKRFRALKLWFVI 537 (943)
Q Consensus 462 ~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~-~--af~~~p~YL~~~~~-g~~~d~~~~tie~SRrfrALklW~tL 537 (943)
... .+.....++.+++.+|||+.......+. . .+......+...+. .....+.......+-+...+..++.+
T Consensus 149 -~~~---~~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~ 224 (352)
T cd00616 149 -KGR---KVGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGL 224 (352)
T ss_pred -CCE---EcccCcceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHH
Confidence 000 0101123455555567999622221110 0 00000001111100 00000001111111112222222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCC
Q psy11047 538 RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 617 (943)
Q Consensus 538 r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~ 617 (943)
....++.+.+++ ..++++++.+.|.+.
T Consensus 225 --~~l~~~~~~~~~---------------------------------------------------~~~~~~~~~~~L~~~ 251 (352)
T cd00616 225 --AQLEKLDEIIAR---------------------------------------------------RREIAERYKELLADL 251 (352)
T ss_pred --HHHHhhHHHHHH---------------------------------------------------HHHHHHHHHHHhcCC
Confidence 122333333322 356889999999999
Q ss_pred CCeEEecCC-----CccEEEEEecCC-ChHHHHHHHHHhccCcE---EEeecccCC--------------------CcEE
Q psy11047 618 PRFEIPAAR-----HLGMVVIRLLGE-NILTEKLLKRLNSKGRL---HCVPASLRI--------------------QGLG 668 (943)
Q Consensus 618 p~~eIl~~~-----~l~iV~Fr~~g~-n~l~~~Ll~~L~~~G~~---~~s~t~~~g--------------------~~~l 668 (943)
|+++++.++ ...+++|++.+. ......+.+.|.++|.. ++.+..... ...+
T Consensus 252 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 331 (352)
T cd00616 252 PGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVL 331 (352)
T ss_pred CCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeE
Confidence 999988643 346889988631 12356788888887752 222221110 2589
Q ss_pred EEeecCCCCHHHHHHHHHHHH
Q psy11047 669 RAQNFTRTTNDDITRDWNEIR 689 (943)
Q Consensus 669 R~v~~~~tt~edId~ll~~I~ 689 (943)
|+.+++++|++||++++++|+
T Consensus 332 ~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 332 SLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred EccCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998874
No 59
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.58 E-value=4.8e-14 Score=157.63 Aligned_cols=330 Identities=10% Similarity=-0.028 Sum_probs=202.1
Q ss_pred cCCCChHHHHHHHHHHHH----hccCccccCC---hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC-hHHH
Q psy11047 199 PALNSYPSLLGDMLSDAI----NCLGFTWASS---PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT-ASES 270 (943)
Q Consensus 199 ~~~~s~~silgd~L~~al----N~n~~~~~~S---PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG-GTeA 270 (943)
+++...|.-+.+.+...+ |...+.+..+ +.+.++-.++++.++++||.+.+ ...+||+| ||+|
T Consensus 5 pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~---------~~vvf~~gs~T~a 75 (355)
T cd00611 5 AGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN---------YKVLFLQGGATGQ 75 (355)
T ss_pred CCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCCchHH
Confidence 444444444444444444 5666666666 66778888999999999998654 36899988 9999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCc-CHHHHH-HHHHHh
Q psy11047 271 TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSL-RGDKLI-EAIERD 348 (943)
Q Consensus 271 NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grm-D~daLe-~aI~~d 348 (943)
+..++..- .. ++ .+..+|+++...|.+.+-+-..| .+++.++++++|.. +..++. ..+..
T Consensus 76 ~~~~~~~l----~~------~~------~~~~~i~~g~~~~~~~~~a~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~~~- 137 (355)
T cd00611 76 FAAVPLNL----LG------DK------GTADYVVTGAWSAKAAKEAKRYG-GVVVIVAAKEEGKYTKIPDVETWDLAP- 137 (355)
T ss_pred HHHHHHhc----CC------CC------CeEEEEECCHHHHHHHHHHHhcC-CCcEEEecccccCCCCCCCHhhcCCCC-
Confidence 76655431 10 11 12345666666666644444455 47888887655433 422222 23322
Q ss_pred hccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcccc
Q psy11047 349 KKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 428 (943)
Q Consensus 349 ~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeL 428 (943)
.+.+|+.|+.+|.+|.. +. + +++.||+ .+.|||++..+ ...|
T Consensus 138 -----~~~lV~~~h~~t~tG~~--~~---~--------------------i~~~~g~-------~~~VDa~qs~g-~~~i 179 (355)
T cd00611 138 -----DAAYVHYCSNETIHGVE--FD---E--------------------VPDTGGV-------PLVADMSSNIL-SRPI 179 (355)
T ss_pred -----CCCEEEEeCCcccccEE--cc---e--------------------ecccCCC-------eEEEEcccccc-CCCC
Confidence 26689999999999997 22 3 4445999 99999998776 3211
Q ss_pred ccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh--h-hhcccCccc
Q psy11047 429 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--H-RTFNVEPLY 505 (943)
Q Consensus 429 p~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~-~af~~~p~Y 505 (943)
+ . +..|-...++||+++...-+.+ . +.+...+++
T Consensus 180 -----------------------------------d-v-------~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~ 216 (355)
T cd00611 180 -----------------------------------D-V-------SKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKI 216 (355)
T ss_pred -----------------------------------C-H-------HHhCEEEeecccccCCCceEEEEECHHHHhhcccC
Confidence 0 1 1113233459999882211111 0 000000011
Q ss_pred cccCCCCcccccCccc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhccccccc
Q psy11047 506 LRHENSGLAIDYMHWQ-IPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYK 583 (943)
Q Consensus 506 L~~~~~g~~~d~~~~t-ie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~ 583 (943)
.. .+.+|. ...... .+.|....|+.|+.+.++.+.+ . |++.|.++
T Consensus 217 ~~--------~~~~~~~~~~~~~-----~~~Tpn~~~i~~L~aal~~l~~---------------~gg~e~i~~~----- 263 (355)
T cd00611 217 TP--------SMLNYKTHADNNS-----LYNTPPTFAIYMMGLVLKWLKE---------------QGGVEAMEKR----- 263 (355)
T ss_pred CC--------CcccHHHHHhcCC-----CCCCChHHHHHHHHHHHHHHHH---------------cCCHHHHHHH-----
Confidence 10 011111 000000 1347788889999999998643 3 45555443
Q ss_pred ccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeE-EecC--CCc-cEEEEEecCCChHHHHHHHHHhccCcEEEee
Q psy11047 584 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFE-IPAA--RHL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVP 659 (943)
Q Consensus 584 i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~e-Il~~--~~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~ 659 (943)
+.++++++.+.|.++|++. ...+ ... .+++|++++. .+..++++.+.++|. + .+
T Consensus 264 -------------------~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~-~l~~~~~~~~~r~G~-~-~~ 321 (355)
T cd00611 264 -------------------NRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE-ELEKEFLKEAEAAGM-I-GL 321 (355)
T ss_pred -------------------HHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh-hhhHHHHHHHHHCCC-c-cc
Confidence 6789999999999998863 2211 234 4599998875 345666677778887 3 44
Q ss_pred cccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 660 ASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 660 t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
...+..+.+|+++++++|.+||++++++|+++
T Consensus 322 ~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 322 KGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred CCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 33333478999999999999999999999885
No 60
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.58 E-value=1.4e-12 Score=146.39 Aligned_cols=298 Identities=10% Similarity=0.005 Sum_probs=183.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
...+.+|+++|.++ ..+++|||++|..++.+-. .+| -.|+++...|+|+
T Consensus 55 ~~~e~lA~~~g~~~------------~~i~~g~~~a~~~~~~~l~----------~~g---------d~Vl~~~~~h~s~ 103 (370)
T TIGR02539 55 DFLEDLAEFLGMDE------------ARVTHGAREGKFAVMHALC----------KEG---------DWVVLDGLAHYTS 103 (370)
T ss_pred HHHHHHHHHhCCCc------------eEEECChHHHHHHHHHHhh----------CCC---------CEEEECCcccHHH
Confidence 44566899999864 4679999999876655321 122 2477788999999
Q ss_pred HHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhcc-CCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKK-HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~k-G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
..++.+.+.+++.++.+ .++.+|+++|++.|...... +..+.+|+.+..++.+|.+.|+++|.+
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~------------- 170 (370)
T TIGR02539 104 YVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAK------------- 170 (370)
T ss_pred HHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHH-------------
Confidence 88776656688888875 36889999999999753221 123667888888888999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|++||+ ++++|+||+.+ .+ + .+ ..
T Consensus 171 -------la~~~~~-------~livDea~~~g-~~--~---------------------------------~~-~~---- 195 (370)
T TIGR02539 171 -------VCREKGV-------PLLLNCAYTVG-RM--P---------------------------------VS-AK---- 195 (370)
T ss_pred -------HHHHcCC-------eEEEECccccC-Cc--C---------------------------------CC-HH----
Confidence 9999999 99999999765 21 1 00 00
Q ss_pred CCCCeeEEEEcCCCccCccCc-chhhhhcccCccccccCCCCcccccCcccc-CCCCC-cchHHHHHHHHHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKNS-GALHRTFNVEPLYLRHENSGLAIDYMHWQI-PLSKR-FRALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~~-~~L~~af~~~p~YL~~~~~g~~~d~~~~ti-e~SRr-frALklW~tLr~~G~~Gl~~~ 548 (943)
. ..+|.++.++|||++..-+ +.+... ..-..++...... ++...... .++.. ..+..++.++. ...+.
T Consensus 196 ~-~~~di~v~s~sK~~~~~g~~G~l~~~-~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~al~-----~~~~~ 266 (370)
T TIGR02539 196 E-IGADFIVGSGHKSMAASGPCGVLGMS-EEWEDIVLRKSRY--SPVKEVELLGCTSRGAPIVTMMASFP-----HVVER 266 (370)
T ss_pred H-cCCCEEEeeCcccccCCCCEEEEEEC-HHHHhhhcccccC--CccceeeeecccccccHHHHHHHHHH-----HHHHH
Confidence 0 1468999999999872110 111000 0000111110000 00000001 11111 12222222221 11222
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe--cCC
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP--AAR 626 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl--~~~ 626 (943)
+++.. +..+.++++.+.|.+. +++++ .+.
T Consensus 267 l~~~~------------------------------------------------~~~~~~~~l~~~L~~~-g~~~~~~~~s 297 (370)
T TIGR02539 267 VKRWD------------------------------------------------EEVKKTRWFVAELEDI-GFIQLGQKPK 297 (370)
T ss_pred HHHHH------------------------------------------------HHHHHHHHHHHHHHhC-CcEEEccCCC
Confidence 22210 0244567888888886 68874 367
Q ss_pred CccEEEEEecCCC-------hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGEN-------ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 627 ~l~iV~Fr~~g~n-------~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
..|++.|++++.. .....+.++|.++|.+.+.+ ....++|++.+ ..+.+|++++++.|+++.+
T Consensus 298 ~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~ 367 (370)
T TIGR02539 298 EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---GQTKYFKLSVY-GLTKEQVEYVVDSFEEIVE 367 (370)
T ss_pred cCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC---CcceEEEEEec-CCCHHHHHHHHHHHHHHHH
Confidence 8999999875321 12346888899888742322 22458999654 4599999999999987754
No 61
>PRK07179 hypothetical protein; Provisional
Probab=99.57 E-value=6.2e-13 Score=150.66 Aligned_cols=295 Identities=14% Similarity=0.058 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++|. .||+++|.+. .+||+|||+||..++.+.. .+| -.+++
T Consensus 99 ~~~~~le~----~la~~~g~~~------------~~~~~sG~~An~~~l~~l~----------~~g---------~~v~~ 143 (407)
T PRK07179 99 SPKPQFEK----KLAAFTGFES------------CLLCQSGWAANVGLLQTIA----------DPN---------TPVYI 143 (407)
T ss_pred hHHHHHHH----HHHHHhCCCc------------EEEECCHHHHHHHHHHHhC----------CCC---------CEEEE
Confidence 45666764 6788888742 5899999999988776421 111 24677
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
+..+|.|+..++......+..++ ..|+++|++.|++. .+.+|+...-.+.+|.+-|+++|.+
T Consensus 144 ~~~~h~s~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~pl~~I~~-------- 205 (407)
T PRK07179 144 DFFAHMSLWEGVRAAGAQAHPFR-----HNDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAPLADIVD-------- 205 (407)
T ss_pred ECCcCHHHHHHHHHCCCeEEEec-----CCCHHHHHHHHHhc-----CCeEEEECCCCCCCCccccHHHHHH--------
Confidence 89999999877754333443332 25899999998753 1556666667788999999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccch
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA 466 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~ 466 (943)
+|++||+ ++|+|.+++.+ .+ | .+|.-....
T Consensus 206 ------------l~~~~~~-------~livDea~~~g-~~--------g---------------------~~g~g~~~~- 235 (407)
T PRK07179 206 ------------IAEEFGC-------VLVVDESHSLG-TH--------G---------------------PQGAGLVAE- 235 (407)
T ss_pred ------------HHHHcCC-------EEEEECccccc-Cc--------C---------------------CCCCchHHh-
Confidence 9999999 99999999754 21 0 001000111
Q ss_pred hhhhcCC-CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHH
Q psy11047 467 SLRIQGL-GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKG 544 (943)
Q Consensus 467 r~~l~Gi-e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~G 544 (943)
+ ++ +.+|.++.++||+++.+-+..+.+. . -..++..-. .... ..++-. ..+..+..+++..- .
T Consensus 236 ---~-~~~~~vdi~~~S~sK~~g~~~G~l~~~~-~-~~~~~~~~~-----~~~~--~~~t~~~~~~aa~~aal~~~~--~ 300 (407)
T PRK07179 236 ---L-GLTSRVHFITASLAKAFAGRAGIITCPR-E-LAEYVPFVS-----YPAI--FSSTLLPHEIAGLEATLEVIE--S 300 (407)
T ss_pred ---c-CCCCCCCEEEeechHhhhccCeEEEeCH-H-HHHHHHHhC-----cCee--eCCCCCHHHHHHHHHHHHHHh--c
Confidence 1 22 3579999999999984422111000 0 000111000 0000 011101 01111111111110 0
Q ss_pred HHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec
Q psy11047 545 LQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA 624 (943)
Q Consensus 545 l~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~ 624 (943)
..+..++ ..+++++|.+.|.+. ++++..
T Consensus 301 ~~~~~~~---------------------------------------------------l~~~~~~l~~~L~~~-g~~v~~ 328 (407)
T PRK07179 301 ADDRRAR---------------------------------------------------LHANARFLREGLSEL-GYNIRS 328 (407)
T ss_pred CHHHHHH---------------------------------------------------HHHHHHHHHHHHHHc-CCCCCC
Confidence 0011111 245677788888776 677663
Q ss_pred CCCccEEEEEecCCChHHHHHHHHHhccCcE---EEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 625 ARHLGMVVIRLLGENILTEKLLKRLNSKGRL---HCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 625 ~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~---~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+++.+.+... .-...+.+.|.++|.+ ++.+....+..++|++++..+|++||+++++.|+++.++
T Consensus 329 --~~~i~~l~~~~~-~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 329 --ESQIIALETGSE-RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred --CCCEEEEEeCCH-HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 457888876421 2246777888888864 233433334679999999999999999999999877554
No 62
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.55 E-value=4.6e-13 Score=151.06 Aligned_cols=313 Identities=10% Similarity=-0.027 Sum_probs=192.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC-ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT-TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs-GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
.++...++-.++++.+++++|.++. ...+|++ |||+++..++..- ++ + ++..
T Consensus 42 r~~~f~~~~~~~r~~l~~l~~~~~~---------~~v~~~~gs~T~~~~~~~~~l----~~------~--------~~~~ 94 (378)
T PRK03080 42 RQKPVKALLKRVIEGTRELLSLPEG---------YEVGIVPGSDTGAWEMALWSL----LG------A--------RRVD 94 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC---------ceEEEECCchHHHHHHHHHhc----CC------C--------Ccce
Confidence 3466778888999999999999753 2567775 8999976665421 10 1 1222
Q ss_pred EEecCCCchHHHH--HH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSVEK--AG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv~K--Aa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++. ...|.+-.. ++ .+|..+++.++.+..+.+|+++++ . +..|+.++.+|.+|.+.|+++|++
T Consensus 95 vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-------~~~V~~~h~~t~tG~~~pi~~I~~-- 160 (378)
T PRK03080 95 HLA-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVD----F-------DRDVVFTWNGTTTGVRVPVARWIG-- 160 (378)
T ss_pred EEE-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcC----C-------CCCEEEEecCCccceeccchhhcc--
Confidence 333 457777433 22 356548888888777788877633 1 224889999999999999999875
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+++|+ ++.|||+++.+ .. |
T Consensus 161 --------------------~~~g~-------~~vVDa~qs~G-~~--p------------------------------- 179 (378)
T PRK03080 161 --------------------ADREG-------LTICDATSAAF-AL--P------------------------------- 179 (378)
T ss_pred --------------------ccCCC-------eEEEecccccc-cC--C-------------------------------
Confidence 46899 99999998766 32 1
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccC--------cchhhhhcccCccccccCCCCcccccCcccc---CCCCCcc
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKN--------SGALHRTFNVEPLYLRHENSGLAIDYMHWQI---PLSKRFR 529 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~--------~~~L~~af~~~p~YL~~~~~g~~~d~~~~ti---e~SRrfr 529 (943)
.. + ..+|.+.+++||||+.+. +..+.. + .| +..... ...+.++.. ...+++.
T Consensus 180 --id-----v---~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~-~--~p-~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (378)
T PRK03080 180 --LD-----W---SKLDVYTFSWQKVLGGEGGHGMAILSPRAVER-L--ES-YTPARP---IPKFFRLTKGGKAIENSFK 242 (378)
T ss_pred --CC-----H---HHCcEEEEehhhhCCCCCceEEEEECHHHHHh-h--hc-ccCCCC---CchhheeccchHHhhhhhc
Confidence 11 1 125999999999998222 112211 1 11 110000 001111111 0111222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
. ..+.+....+..++.+.++.+.+ . |++.+.++ +.++++
T Consensus 243 ~-~t~~tp~i~~i~~l~~al~~l~~---------------~gG~e~i~~r------------------------~~~l~~ 282 (378)
T PRK03080 243 G-QTINTPSMLTVEDYLDQLDWANS---------------IGGLDALIAR------------------------TAANAS 282 (378)
T ss_pred C-CcccCchHHHHHHHHHHHHHHHH---------------cCCHHHHHHH------------------------HHHHHH
Confidence 1 11224555666676777777542 2 44444332 577899
Q ss_pred HHHHHHhCCCCeEEecC-C---CccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 609 KFEALVLGDPRFEIPAA-R---HLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 609 ~l~~~L~~~p~~eIl~~-~---~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.+.|.+.++++++.+ + ...+++|++++.+ .....+..++.++|.+..+.......+.+|++++.++|.+||++
T Consensus 283 ~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~ 362 (378)
T PRK03080 283 VLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEA 362 (378)
T ss_pred HHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHH
Confidence 99999999988888742 2 2358999987511 23455666776666433221111124689999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 684 DWNEIRNTATEIL 696 (943)
Q Consensus 684 ll~~I~~~~~~ll 696 (943)
++++|+++.+++.
T Consensus 363 l~~al~~~~~~~~ 375 (378)
T PRK03080 363 LTPWLDWAFERLK 375 (378)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998765543
No 63
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.53 E-value=4.6e-12 Score=140.99 Aligned_cols=316 Identities=11% Similarity=-0.025 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++...+.+.+++++|.++.. ...++|+|||+++..++.+.- .+ ++-+++
T Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~--------~~i~~~~~gt~~l~~~~~~l~----------~~--------~~~vlv- 85 (368)
T PRK13479 33 DDFNALTASVRAKLVAIATGEEGY--------TCVPLQGSGTFSVEAAIGSLV----------PR--------DGKVLV- 85 (368)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEcCCcHHHHHHHHHhcc----------CC--------CCeEEE-
Confidence 444456678999999999986421 236789999999977766421 01 122333
Q ss_pred cCCCchHH--HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 307 SDQAHSSV--EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 307 S~~aHySv--~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
....+|.. .+++...+.+++.|+.+.++.+|+++++++++... .+.+|..+...|.+|.+.|+++|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~~~tG~~~~~~~i~~------ 155 (368)
T PRK13479 86 PDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADP----RITHVALVHCETTTGILNPLDEIAA------ 155 (368)
T ss_pred EeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCC----CCcEEEEEcccCccccccCHHHHHH------
Confidence 34455543 35554434588899998788999999999987542 1446778888899999999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+|+++|+ ++++|++++-. .. + .+
T Consensus 156 --------------l~~~~~~-------~livDa~~~~g-~~--~---------------------------------~~ 178 (368)
T PRK13479 156 --------------VAKRHGK-------RLIVDAMSSFG-AI--P---------------------------------ID 178 (368)
T ss_pred --------------HHHHcCC-------EEEEEcccccC-Cc--c---------------------------------cc
Confidence 9999999 99999775332 11 0 00
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC-ccCcch------hhhhcc-cCccc-cccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR-VKNSGA------LHRTFN-VEPLY-LRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~-vr~~~~------L~~af~-~~p~Y-L~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
+.. ..+|.+..+.|||++ ...-+. +...+. ....| +... ...++. .. .+.++|.
T Consensus 179 -----~~~-~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-~~~~~~t------ 241 (368)
T PRK13479 179 -----IAE-LGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLY---DQWAYM-EK-TGQWRFT------ 241 (368)
T ss_pred -----ccc-cCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHH---HHHhhh-cc-cCCCCCC------
Confidence 111 147999999999986 111111 111111 00111 1000 000000 00 1122221
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
....+..++.+.++.+.+. .+++.+.+ +..++++++.+.|.
T Consensus 242 -~~~~~~~~l~~al~~l~~~--------------~~~~~~~~------------------------~~~~~~~~l~~~L~ 282 (368)
T PRK13479 242 -PPTHVVAAFYQALLELEEE--------------GGVPARGA------------------------RYANNQRTLVAGMR 282 (368)
T ss_pred -CcHHHHHHHHHHHHHHHHh--------------hCHHHHHH------------------------HHHHHHHHHHHHHH
Confidence 1112222333333332110 00111000 03566777888887
Q ss_pred CCCCeEEecCC--Cc-cEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 616 GDPRFEIPAAR--HL-GMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 616 ~~p~~eIl~~~--~l-~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+. +++++.++ .. .+++|.+.... ....++.++|.++|.+ +.+........+|++...+++.+|++++++.|+++
T Consensus 283 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~-v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~ 360 (368)
T PRK13479 283 AL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFV-IYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEA 360 (368)
T ss_pred Hc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEE-EecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 76 77776543 22 35778765432 2246888999888864 43322222457999776788999999999999887
Q ss_pred HHH
Q psy11047 692 ATE 694 (943)
Q Consensus 692 ~~~ 694 (943)
..+
T Consensus 361 l~~ 363 (368)
T PRK13479 361 LYW 363 (368)
T ss_pred HHH
Confidence 553
No 64
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.49 E-value=2.7e-11 Score=135.88 Aligned_cols=297 Identities=11% Similarity=0.020 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+.+|+++|.+ ..++++||++||..++.+. + .+| -.|++++.+|.|
T Consensus 86 ~~le~~ia~~~g~~------------~~ii~~~~~~a~~~~~~~l----~------~~g---------d~vi~~~~~~~s 134 (393)
T TIGR01822 86 KELEAKIAAFLGTE------------DTILYASCFDANGGLFETL----L------GAE---------DAIISDALNHAS 134 (393)
T ss_pred HHHHHHHHHHhCCC------------cEEEECchHHHHHHHHHHh----C------CCC---------CEEEEeccccHH
Confidence 33446778888874 3677899999988554321 1 122 247778999999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++.+.....+.++ .+|+++|++.|++....+..+.+|+...-.+.+|.+.|+++|.+
T Consensus 135 ~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~--------------- 194 (393)
T TIGR01822 135 IIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICD--------------- 194 (393)
T ss_pred HHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHH---------------
Confidence 9887754322333332 38899999999875333334667776666678899999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
+|++||+ |+++|++|+.. .+ .. .|.-..+ ..++
T Consensus 195 -----la~~~~~-------~li~De~~~~g-~~--~~---------------------------~~~~~~~-----~~~~ 227 (393)
T TIGR01822 195 -----LADKYDA-------LVMVDECHATG-FL--GP---------------------------TGRGSHE-----LCGV 227 (393)
T ss_pred -----HHHHcCC-------EEEEECCcccc-Cc--CC---------------------------CCCchHH-----hcCC
Confidence 9999999 99999998543 11 00 0000000 1122
Q ss_pred -CCeeEEEEcCCCccC-ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH-HHHHHHHH
Q psy11047 474 -GRAQNFTIVPSSLLR-VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI-KGLQKHIR 550 (943)
Q Consensus 474 -e~ADSItiDpHK~L~-vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~-~Gl~~~I~ 550 (943)
..+|.++.++||+++ .+-. .+. ....++..-.. -...+...++.... .+++.+.++-. +...+..+
T Consensus 228 ~~~~di~~~s~sK~l~g~r~G-~~~----~~~~~~~~l~~----~~~~~~~~~~~~~~--~~~a~~~al~~~~~~~~~~~ 296 (393)
T TIGR01822 228 MGRVDIITGTLGKALGGASGG-FTT----ARKEVVELLRQ----RSRPYLFSNSLPPA--VVGASIKVLEMLEASNELRD 296 (393)
T ss_pred CCCCeEEEEEChHHhhCCCcE-EEE----eCHHHHHHHHH----hCccceecCCCCHH--HHHHHHHHHHHHhcCHHHHH
Confidence 257999999999976 2211 110 00001000000 00001112222111 11111111100 11111111
Q ss_pred HHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccE
Q psy11047 551 EIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGM 630 (943)
Q Consensus 551 ~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~i 630 (943)
+ ..++++++.+.|.+. ++++. ++..++
T Consensus 297 ~---------------------------------------------------~~~~~~~l~~~L~~~-g~~~~-~~~~~~ 323 (393)
T TIGR01822 297 R---------------------------------------------------LWANTRYFRERMEAA-GFDIK-PADHPI 323 (393)
T ss_pred H---------------------------------------------------HHHHHHHHHHHHHHc-CCCCC-CCCCCE
Confidence 1 234566777777664 67664 334557
Q ss_pred EEEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 631 VVIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 631 V~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.+.+.+. ....++.+.|.++|. +++.... .+...+|++++..+|++||+++++.|+++..+
T Consensus 324 ~~i~~~~~-~~~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 324 IPVMLYDA-VLAQRFARRLLEEGI-YVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred EEEEeCCH-HHHHHHHHHHHHCCe-eEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 77765431 235678888888874 4443211 24457999999999999999999999887554
No 65
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.48 E-value=1.4e-11 Score=134.89 Aligned_cols=298 Identities=8% Similarity=-0.071 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
+...+.+++++++|.++ .+++++||++|+.++.+.. .+| -.|++++..|
T Consensus 47 ~~~~l~~~la~~~~~~~------------~iv~~sg~~a~~~~~~~~~----------~~g---------d~Vl~~~~~~ 95 (349)
T cd06454 47 LHEELEEELAEFHGKEA------------ALVFSSGYAANDGVLSTLA----------GKG---------DLIISDSLNH 95 (349)
T ss_pred HHHHHHHHHHHHhCCCC------------EEEeccHHHHHHHHHHHhc----------CCC---------CEEEEehhhh
Confidence 33455567888888742 4778888999987765321 122 2467788899
Q ss_pred hHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
.++..++..-+..+..++. +|.+.+++.|++..+ ...+.+|+.+...+.+|.+.|+++|.+
T Consensus 96 ~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~-~~~~~~v~~~~~~~~tG~~~~~~~i~~------------- 156 (349)
T cd06454 96 ASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARR-PYGKKLIVTEGVYSMDGDIAPLPELVD------------- 156 (349)
T ss_pred HHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhc-cCCCeEEEEeccccCCCCccCHHHHHH-------------
Confidence 9988877543335666652 578899998876431 123677777777888999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhc
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQ 471 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~ 471 (943)
+|+++|+ ++++|++++.. .+. +. +. ...... .
T Consensus 157 -------~~~~~~~-------~livD~a~~~g-~~~-~~----------------------------~~-~~~~~~---~ 188 (349)
T cd06454 157 -------LAKKYGA-------ILFVDEAHSVG-VYG-PH----------------------------GR-GVEEFG---G 188 (349)
T ss_pred -------HHHHcCC-------EEEEEcccccc-ccC-CC----------------------------CC-Chhhhc---c
Confidence 9999999 99999999643 110 00 00 000000 0
Q ss_pred CCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11047 472 GLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIRE 551 (943)
Q Consensus 472 Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~ 551 (943)
....+|.+..++||+++.+.. .+. .+..++..-.. ....+...++-. . .+..++.+.++.
T Consensus 189 ~~~~~~i~~~s~sK~~~~~gG-~i~----~~~~~~~~~~~----~~~~~~~~~~~~--~---------~~~~a~~~~l~~ 248 (349)
T cd06454 189 LTDDVDIIMGTLGKAFGAVGG-YIA----GSKELIDYLRS----YARGFIFSTSLP--P---------AVAAAALAALEV 248 (349)
T ss_pred ccccCcEEEeechhhhcccCC-EEE----CCHHHHHHHHH----hchhhhccCCCC--H---------HHHHHHHHHHHH
Confidence 123579999999999985221 110 01111100000 000011111111 1 111111222222
Q ss_pred HHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEE
Q psy11047 552 IFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 631 (943)
Q Consensus 552 ~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV 631 (943)
+.+ ...+++ +..++++++.+.|.+. +++++.++...+.
T Consensus 249 ~~~-----------------~~~~~~------------------------~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~ 286 (349)
T cd06454 249 LQG-----------------GPERRE------------------------RLQENVRYLRRGLKEL-GFPVGGSPSHIIP 286 (349)
T ss_pred Hhc-----------------CHHHHH------------------------HHHHHHHHHHHHHHhc-CCcccCCCCCcEE
Confidence 100 000000 0345677787777765 6777665554445
Q ss_pred EEEecCCChHHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 632 VIRLLGENILTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 632 ~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
++.... .....++.+.|.++|. ++.+... .+..++|+.++.+++++||+++++.|+++
T Consensus 287 ~~~~~~-~~~~~~~~~~L~~~gI-~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 287 PLIGDD-PAKAVAFSDALLERGI-YVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEeCCC-hHHHHHHHHHHHhCCc-eEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 555431 2335788888888875 4443211 22468999889999999999999999875
No 66
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.43 E-value=4.6e-12 Score=142.63 Aligned_cols=332 Identities=10% Similarity=-0.037 Sum_probs=204.6
Q ss_pred cCCCC-hHHHHHHHHHHHH---hccCccccC---ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHH
Q psy11047 199 PALNS-YPSLLGDMLSDAI---NCLGFTWAS---SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASEST 271 (943)
Q Consensus 199 ~~~~s-~~silgd~L~~al---N~n~~~~~~---SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeAN 271 (943)
|++.. ++.++..+..... |...+.+.. ++...++-..+.+.|+++||.|+. ...+|++|++.+-
T Consensus 9 pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~---------~~v~~~~gsgt~~ 79 (360)
T PRK05355 9 AGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDN---------YKVLFLQGGASLQ 79 (360)
T ss_pred CCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC---------cEEEEEcCCchHH
Confidence 44444 3455544444332 222333333 444457888999999999998654 2567777777776
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHH-HHHHhh
Q psy11047 272 LICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIE-AIERDK 349 (943)
Q Consensus 272 L~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~-aI~~d~ 349 (943)
+.|...-. + .+| ..-+++..+..+|.+.+-|-..|. . ..++++. .|..+..++++ .|+++
T Consensus 80 ~Ea~~~nl---~------~~g------~~~l~i~~G~fg~r~~~~a~~~g~-~-~~~~~~~~~g~~~~~~~~~~~l~~~- 141 (360)
T PRK05355 80 FAMVPMNL---L------GGG------KKADYVDTGSWSKKAIKEAKKYGE-V-NVAASSEDDGFTYIPPLDEWQLSDD- 141 (360)
T ss_pred HHHHHHhc---C------CCC------CeEEEEECCHHHHHHHHHHHHhCC-c-eEEecccccCCCCCCChhhccCCCC-
Confidence 66655321 1 112 123567778888888666667785 3 5555543 67777666666 56443
Q ss_pred ccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccc
Q psy11047 350 KKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP 429 (943)
Q Consensus 350 ~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp 429 (943)
+.+|..|+..|.+|...| .|.+ + +|. .+.|||+.+.+ ...
T Consensus 142 -----~~~V~~th~eTstGv~~~--~i~~--------------------i---~g~-------l~vVDavss~g-~~~-- 181 (360)
T PRK05355 142 -----AAYVHYTSNETIDGTEFH--ELPD--------------------T---GDV-------PLVADMSSDIL-SRP-- 181 (360)
T ss_pred -----CCEEEEccCCCcceEecC--cccc--------------------c---CCC-------cEEEEcCcccc-Ccc--
Confidence 678999999999999974 3555 5 788 89999998766 321
Q ss_pred cccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh---hhhcc-cCccc
Q psy11047 430 AARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL---HRTFN-VEPLY 505 (943)
Q Consensus 430 ~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L---~~af~-~~p~Y 505 (943)
++ + ...|.+.++.||+++...-+.+ .+++. ..+.
T Consensus 182 ---------------------------------id-----v---~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~- 219 (360)
T PRK05355 182 ---------------------------------ID-----V---SKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPS- 219 (360)
T ss_pred ---------------------------------CC-----H---HHccEEEEeccccccCCceEEEEECHHHHhhcccC-
Confidence 11 1 1237999999999882111111 00000 1110
Q ss_pred cccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccc
Q psy11047 506 LRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKM 584 (943)
Q Consensus 506 L~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i 584 (943)
+ +...++..+.... ..+.|....+..|+.+.++.+.+ . |++.+.++
T Consensus 220 ~-----~~~~~~~~~~~~~-------~~~~Tp~~~~i~aL~~aL~~i~~---------------~gG~e~i~~r------ 266 (360)
T PRK05355 220 I-----PSMLDYKTHADND-------SMYNTPPTFAIYLAGLVFKWLKE---------------QGGVAAMEKR------ 266 (360)
T ss_pred C-----ChHHHHHHHHhcC-------CccCCCcHHHHHHHHHHHHHHHH---------------ccCHHHHHHH------
Confidence 0 0001111100000 01246677788888888888643 3 45544433
Q ss_pred cccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC--CCc-cEEEEEecCCChHHHHHHHHHhccCcEEEeecc
Q psy11047 585 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA--RHL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 661 (943)
Q Consensus 585 ~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~--~~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~ 661 (943)
+.++++++.+.|.+.+.+..+.+ ... .+++|++++. .+...+++.+.++|.. | +..
T Consensus 267 ------------------~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~-~-~~~ 325 (360)
T PRK05355 267 ------------------NQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE-ELDKKFLAEAKAAGLV-G-LKG 325 (360)
T ss_pred ------------------HHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh-HHHHHHHHHHHHCCCc-c-cCC
Confidence 67899999999999884444332 234 5699998764 3346677788888864 5 332
Q ss_pred cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 662 LRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 662 ~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
.+..+.+|+++..++|.+||+++++.|+++.+
T Consensus 326 ~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 326 HRSVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred CCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 33347899999999999999999999998654
No 67
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.42 E-value=5.8e-11 Score=133.64 Aligned_cols=300 Identities=12% Similarity=0.017 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCc-------hhhhcCCc
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPEL-------EHAEINSR 301 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl-------~~~~i~~~ 301 (943)
..++-.++.+++++++|.+ ..++|+|||+|+..++.+.-. +|- -......+
T Consensus 43 ~~~~~~~~~~~~a~~~g~~------------~~~~~~g~t~al~~al~al~~----------~Gd~~~~~~~~~s~~~~~ 100 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVE------------DAVIVSSASAGIAQSVAAVIT----------RGNRYLVENLHDSKIEVN 100 (363)
T ss_pred HHHHHHHHHHHHHHhhCCC------------eEEEEcCHHHHHHHHHHHHhc----------CCCcchhhcccccccccc
Confidence 3466677888999999974 368999999999988876421 120 00000112
Q ss_pred eEEEecCCCchHHH-----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEE-EecCCCcccccccHHH
Q psy11047 302 LVAYCSDQAHSSVE-----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIF-SGLALPAFLVVDSYCC 375 (943)
Q Consensus 302 ~vV~~S~~aHySv~-----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VV-aTaGTT~tGaIDpL~e 375 (943)
- |+++. .||... .++.+.+..++.++. ++.+|+++++++|.++ +.+++ .+...+.+|.+-|+++
T Consensus 101 e-Vi~~~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~------t~ai~~v~~~~~~~g~~~~~~~ 170 (363)
T TIGR01437 101 E-VVLPK-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEK------TAAILYIKSHHCVQKSMLSVED 170 (363)
T ss_pred e-EEEEC-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChh------ceEEEEEecCCCCcCCcCCHHH
Confidence 2 44544 777643 233455556777765 4679999999999865 33344 3444557788989999
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
|++ +|++||+ ++|+|+|++.. +
T Consensus 171 i~~--------------------~a~~~gi-------~vivD~a~~~~--~----------------------------- 192 (363)
T TIGR01437 171 AAQ--------------------VAQEHNL-------PLIVDAAAEED--L----------------------------- 192 (363)
T ss_pred HHH--------------------HHHHcCC-------eEEEECCCCCc--h-----------------------------
Confidence 999 9999999 99999999722 1
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHH
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWF 535 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~ 535 (943)
..... . .+|.+++++|||++-...+.+. ..+..+..- .. ......|.++...
T Consensus 193 --------~~~~~----~-g~D~~~~S~~K~l~gp~~G~l~----~~~~~i~~~------~~--~~~~~~~~~~~~~--- 244 (363)
T TIGR01437 193 --------QKYYR----L-GADLVIYSGAKAIEGPTSGLVL----GKKKYIEWV------KL--QSKGIGRAMKVGK--- 244 (363)
T ss_pred --------HHHHH----c-CCCEEEEeCCcccCCCceEEEE----EcHHHHHHH------Hh--ccCCCcceeccCH---
Confidence 00000 1 4799999999988622222221 011111100 00 0001123333211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
.+..|+.+.++.+.+ .+.+.+.+ ..+.++++.+.|.
T Consensus 245 ----~~~~gl~aAl~~~~~---------------~~~~~~~~-------------------------~~~~~~~l~~~L~ 280 (363)
T TIGR01437 245 ----ENILGLTAALEQYLS---------------TGKESGAE-------------------------MVAKLTPFIEALN 280 (363)
T ss_pred ----HHHHHHHHHHHHHHc---------------cCcccHHH-------------------------HHHHHHHHHHHHh
Confidence 234566666665321 01111111 2345667999999
Q ss_pred CCCCeEEecCC-------CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 616 GDPRFEIPAAR-------HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 616 ~~p~~eIl~~~-------~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
++|++++..++ ....|.|...+.+.-..++.++|.+.|.-..+.......+.+|+.... ++++|++.++++|
T Consensus 281 ~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l 359 (363)
T TIGR01437 281 TLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERI 359 (363)
T ss_pred cCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHH
Confidence 99999987432 124466665322223578889998766423332223345678874443 5699999999999
Q ss_pred HHH
Q psy11047 689 RNT 691 (943)
Q Consensus 689 ~~~ 691 (943)
+++
T Consensus 360 ~~~ 362 (363)
T TIGR01437 360 REI 362 (363)
T ss_pred HHh
Confidence 875
No 68
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.41 E-value=7.4e-11 Score=132.47 Aligned_cols=174 Identities=11% Similarity=-0.017 Sum_probs=108.9
Q ss_pred CCCCCCCceeEEccCCCChHHHHHHHHHHHHhc--cC-ccccCCh---hHHHHHHHHHHHHHHHhCCCccccccCcCCCC
Q psy11047 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC--LG-FTWASSP---ACTELEIITMNWLGKMIGLPEEFLHTKVDSPG 259 (943)
Q Consensus 186 ~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~--n~-~~~~~SP---aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~ 259 (943)
...|.+=.|+|+-..+...++++ +.+.....+ +. .....+. .++.+-.+..+.+|+++|.+.
T Consensus 6 ~~~~~s~~YL~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~----------- 73 (370)
T PRK05937 6 SIDFVTNDFLGFSRSDTLVHEVE-KRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE----------- 73 (370)
T ss_pred eEEeECCCccCCCCCHHHHHHHH-HHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-----------
Confidence 34577777887765544333333 333222211 11 2222222 144555567788899999863
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGD 339 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~d 339 (943)
.++.++|+.+|+ ++..+ +. . +.-.|+.+...|.|+..++.+........ +..|++
T Consensus 74 -~l~~~sG~~a~~-~~~~~----~~-----~---------~~d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~ 128 (370)
T PRK05937 74 -AFIVPSGYMANL-GLCAH----LS-----S---------VTDYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLD 128 (370)
T ss_pred -EEEECChHHHHH-HHHHH----hC-----C---------CCCEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHH
Confidence 245555667775 33221 10 0 12357778999999999885422222223 346899
Q ss_pred HHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh
Q psy11047 340 KLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 419 (943)
Q Consensus 340 aLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA 419 (943)
+|++.|+.....+..+.+|+.+...+.+|.+-|+++|.+ +|+++|+ ++|||+|
T Consensus 129 ~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~--------------------l~~~~~~-------~livDea 181 (370)
T PRK05937 129 HLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIA--------------------LSKKYHA-------HLIVDEA 181 (370)
T ss_pred HHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHH--------------------HHHHcCC-------EEEEECC
Confidence 999999865332223456667778888999999999999 9999999 9999999
Q ss_pred hcCC
Q psy11047 420 VLGD 423 (943)
Q Consensus 420 ~GG~ 423 (943)
++.+
T Consensus 182 ~~~G 185 (370)
T PRK05937 182 HAMG 185 (370)
T ss_pred cccc
Confidence 9854
No 69
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.38 E-value=3.3e-11 Score=135.28 Aligned_cols=306 Identities=11% Similarity=-0.020 Sum_probs=191.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC-hHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT-ASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG-GTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
+|...++-..+++.|+++||.|.+ ...+|++| ||+|+-.++..- +. +| ..-+++
T Consensus 32 ~~~f~~~~~~~~~~l~~l~~~~~~---------~~v~~~~gsgT~a~ea~~~nl----~~------~~------~~~l~i 86 (349)
T TIGR01364 32 SKEFEAVANEAESDLRELLNIPDN---------YEVLFLQGGATGQFAAVPLNL----LA------EG------KVADYI 86 (349)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCC---------ceEEEEcCCchHHHHHHHHhc----CC------CC------CeEEEE
Confidence 344457777899999999998654 35677766 999986665431 10 11 123566
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCCC----CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDKL----SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~g----rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
..+..+|...+-|-.+|. +..+..++.+ ..++++++ ++. .+.+|..|+..|.+|...| +
T Consensus 87 ~~G~fg~r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~v~~th~ETstGv~~~-----~-- 149 (349)
T TIGR01364 87 VTGAWSKKAAKEAKKYGV--VNVVASGKEGNYTKIPDPSTWE--ISE------DAAYVHYCANETIHGVEFR-----E-- 149 (349)
T ss_pred ECCHHHHHHHHHHHHhCC--cEEEeccccCCCCCCCCHHhcC--CCC------CCCEEEEcCCCCcccEecc-----e--
Confidence 677778877666667787 5555554333 33444433 111 2678999999999999875 4
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCc
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~ 460 (943)
+++.++. .+.|||+.+.+ ..+
T Consensus 150 ------------------l~~~~~~-------l~iVDavss~g-~~~--------------------------------- 170 (349)
T TIGR01364 150 ------------------LPDVKNA-------PLVADMSSNIL-SRP--------------------------------- 170 (349)
T ss_pred ------------------ecccCCC-------eEEEEcccccc-Ccc---------------------------------
Confidence 5557888 89999998765 321
Q ss_pred ccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHH
Q psy11047 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNF 540 (943)
Q Consensus 461 ~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~ 540 (943)
+ .. +..|.+.+++||+++...-+.+ ..++..+..-... ...+.+|.... +.. ..+.|....
T Consensus 171 --i-d~-------~~~d~~~~ssqK~lgP~Glg~l----~~s~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~Tp~~~ 231 (349)
T TIGR01364 171 --I-DV-------SKFGLIYAGAQKNIGPAGLTVV----IVRKDLLGRASRI-TPSMLNYKIHA-END---SMYNTPPTF 231 (349)
T ss_pred --C-CH-------HHccEEEEecccccCCCceEEE----EECHHHHhhcccC-CCCcchHHHHH-hcC---CCCCCCcHH
Confidence 1 11 1247999999999882111111 0011111000000 00111111000 000 112366777
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccccc-chhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCC
Q psy11047 541 GIKGLQKHIREIFSGLALPAFLVVDSYCCL-GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPR 619 (943)
Q Consensus 541 G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~-g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~ 619 (943)
++.++.+.++.+.+ . |++.+.++ +.++++++.+.|.+.++
T Consensus 232 ~i~al~~al~~l~~---------------~gG~e~i~~r------------------------~~~l~~~l~~~l~~~~g 272 (349)
T TIGR01364 232 AIYVSGLVFKWLKE---------------QGGVKAIEKR------------------------NQAKAQLLYDTIDNSNG 272 (349)
T ss_pred HHHHHHHHHHHHHH---------------cCCHHHHHHH------------------------HHHHHHHHHHHHHhCCC
Confidence 88888888888643 3 45555443 67899999999999998
Q ss_pred eEEecC-C--Cc-cEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 620 FEIPAA-R--HL-GMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 620 ~eIl~~-~--~l-~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
+..... + .. .+++|++++. .+..++++.+.++|. |.+......+++|+++..++|.+||++++++|+++.+
T Consensus 273 l~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi--~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 273 FYRNPVDPRNRSRMNVVFTLGNE-ELEKRFLKEAEERGL--VSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred eeccCCCHHHcCCeEEEEecCCh-hHhHHHHHHHHHCCC--cccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 766632 1 34 5689998764 344677778888897 4333222246899999999999999999999998654
No 70
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.37 E-value=1.4e-10 Score=132.92 Aligned_cols=326 Identities=11% Similarity=0.050 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHHhccCcccc------CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWA------SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA 277 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~------~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a 277 (943)
.|.+...+....++..+..+. ..|...++|..+.+.+++++|.+. .-+++++||.||+.++.+
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~-----------alv~~~SG~~A~~~~l~a 109 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY-----------ANVQPHSGSQANGAVYLA 109 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc-----------eEEecCCcHHHHHHHHHH
Confidence 455565555554455443222 247789999988999999999753 235678999999887764
Q ss_pred HHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH-HHHHHH--CCccE--EEEecC-CCCCcCHHHHHHHHHHhhcc
Q psy11047 278 GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV-EKAGLI--GLVNM--RYIESD-DKLSLRGDKLIEAIERDKKK 351 (943)
Q Consensus 278 AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv-~KAa~L--G~~~v--~~Vp~D-~~grmD~daLe~aI~~d~~k 351 (943)
- + .|| -.|+++...|.+. ..++.+ +...+ .....+ ..+.+|+++|++.+...
T Consensus 110 l----~------~~G---------D~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 167 (416)
T PRK13034 110 L----L------KPG---------DTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH--- 167 (416)
T ss_pred h----c------CCC---------CEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhc---
Confidence 2 1 122 3578888899873 333322 11122 233333 25679999999988652
Q ss_pred CCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccc
Q psy11047 352 HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA 431 (943)
Q Consensus 352 G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~ 431 (943)
.|.+|+.+ .+.+|..-|+.+|.+ +|++||+ ++++|+|++.+ .+
T Consensus 168 --~~klVi~~--~~~~g~~~dl~~l~~--------------------la~~~g~-------~livD~Aha~G-~~----- 210 (416)
T PRK13034 168 --KPKLIIAG--FSAYPRELDFARFRE--------------------IADEVGA-------LLMVDMAHIAG-LV----- 210 (416)
T ss_pred --CCeEEEEC--CCccccccCHHHHHH--------------------HHHHcCC-------EEEEeCccccc-Cc-----
Confidence 15555533 344677778999999 9999999 99999998766 22
Q ss_pred cccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCcc--ccccC
Q psy11047 432 RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPL--YLRHE 509 (943)
Q Consensus 432 ~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~--YL~~~ 509 (943)
..... ...+..+|.++.++|||+....+..+. ..++. +....
T Consensus 211 ------------------------------~~g~~---~~~~~~~Di~~~s~~K~l~g~~GG~v~---~~~~~~~~~~~~ 254 (416)
T PRK13034 211 ------------------------------AAGEH---PNPFPHAHVVTTTTHKTLRGPRGGMIL---TNDEEIAKKINS 254 (416)
T ss_pred ------------------------------ccCCC---CCCCCCceEEEEeCcccCCCCCCeEEE---ECcHHHHHHHHh
Confidence 00000 112246899999999999633332221 00000 00000
Q ss_pred CCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCC
Q psy11047 510 NSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 589 (943)
Q Consensus 510 ~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~ 589 (943)
....++..+..+. .+ ..+..++.+.++.- ....++
T Consensus 255 -------~~~~~~~~~~~~~------~~-aa~~~al~~~~~~~-------------------~~~~~~------------ 289 (416)
T PRK13034 255 -------AVFPGLQGGPLMH------VI-AAKAVAFGEALQPE-------------------FKTYAK------------ 289 (416)
T ss_pred -------hcCCcccCCccHH------HH-HHHHHHHHHHhChh-------------------HHHHHH------------
Confidence 0000111111111 11 11111222222110 000000
Q ss_pred CcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeeccc----C-
Q psy11047 590 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL----R- 663 (943)
Q Consensus 590 ~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~----~- 663 (943)
+..+++++|++.|.+. +++++.+ .+.+++.+.+...+.....+.++|.+.|. ++..... +
T Consensus 290 ------------~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI-~v~~~~~p~~~~~ 355 (416)
T PRK13034 290 ------------QVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGI-TVNKNTVPGDTES 355 (416)
T ss_pred ------------HHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCc-EEeccCCCCCCcC
Confidence 0367888999988877 8888753 56777777665433234566678888885 4442111 1
Q ss_pred --CCcEEEEeecC----CCCHHHHHHHHHHHHHHHHH
Q psy11047 664 --IQGLGRAQNFT----RTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 664 --g~~~lR~v~~~----~tt~edId~ll~~I~~~~~~ 694 (943)
....+|++++. ..+++||+++++.|.++..+
T Consensus 356 p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 356 PFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 14579987666 66799999999999988664
No 71
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.35 E-value=3e-11 Score=135.89 Aligned_cols=309 Identities=12% Similarity=-0.012 Sum_probs=180.2
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEc-CChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQ-TTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfT-sGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
.-++...++-.++.+.+++++|.+++ ...+|+ +|||.++..+++.- +. + ..+
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~---------~~v~f~~gs~T~a~~~~~~~l----~~------~--------~~l 86 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDG---------YEVILGNGGATAFWDAATFGL----IE------K--------KSL 86 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCC---------ceEEEECCchhHHHHHHHHhc----cc------c--------ccc
Confidence 45666777888899999999999654 356776 55999987776531 10 0 112
Q ss_pred EEEecCCCchH-HHHHH-H--HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSS-VEKAG-L--IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHyS-v~KAa-~--LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
+ ++...|.+ +.+.+ . ++. ++..++++....++.+ +. ..+.+|+.|+.+|.+|.+.|+++|+
T Consensus 87 ~--i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~-----~~------~~~~lV~~~h~et~tG~~~pi~~I~- 151 (361)
T TIGR01366 87 H--LSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQ-----AD------PGVDVIAWAHNETSTGVAVPVRRPE- 151 (361)
T ss_pred E--EecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCc-----cC------CCCCEEEEcccCCccceeccccccc-
Confidence 2 33334433 23333 2 122 5677776544333331 21 2377999999999999999987664
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+++|+ .+.|||+.... ..
T Consensus 152 ----------------------~~~g~-------~~iVDavqs~g-~~-------------------------------- 169 (361)
T TIGR01366 152 ----------------------GSDDA-------LVVIDATSGAG-GL-------------------------------- 169 (361)
T ss_pred ----------------------ccCCC-------eEEEEcCcccc-CC--------------------------------
Confidence 37899 99999998765 22
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh----hhhcccCccccccCCCCcccccCccc--cCCCCCcchHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL----HRTFNVEPLYLRHENSGLAIDYMHWQ--IPLSKRFRALK 532 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L----~~af~~~p~YL~~~~~g~~~d~~~~t--ie~SRrfrALk 532 (943)
.++ + +.+|.+.+++|||++....-.+ .+.+..-.++.. .+.+. ..+.++. .+. .+++ .
T Consensus 170 ---~id-----v---~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~-~~~~~-p~~~d~~~~~~~--~~~~-~ 233 (361)
T TIGR01366 170 ---PVD-----I---AETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAA-SGRWV-PEFLSLPTAVDN--SLKN-Q 233 (361)
T ss_pred ---CCC-----H---HHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccC-CCCCC-chhhhHHHHHhc--cccC-C
Confidence 111 1 1269999999999993311111 001100000110 00000 0011100 000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
.+.+....+..|+.+.++.+.+. .|++.+.++ +.++++++.+
T Consensus 234 t~~tp~i~~i~~l~~al~~l~~~--------------gg~e~~~~r------------------------~~~l~~~l~~ 275 (361)
T TIGR01366 234 TYNTPAIATLALLAEQIDWMNGN--------------GGLDWAVAR------------------------TADSSSRLYS 275 (361)
T ss_pred CCCCchHHHHHHHHHHHHHHHHc--------------cCHHHHHHH------------------------HHHHHHHHHH
Confidence 11244555566788888875430 134433222 5788999999
Q ss_pred HHhCCCCeEEecC-C-----CccEEEEEecCCChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHH
Q psy11047 613 LVLGDPRFEIPAA-R-----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDW 685 (943)
Q Consensus 613 ~L~~~p~~eIl~~-~-----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll 685 (943)
.+.+.+.++++.+ + ...+|+| ..+.+ ...+.+.|.++|.....+. .+ +..++|++++.++|.+||++++
T Consensus 276 ~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~~--~~~v~~~L~~~gI~i~~~~~~l-~~~~vRis~~~~~t~~di~~l~ 351 (361)
T TIGR01366 276 WAQERPYATPFVTDPGKRSQVVGTIDF-VDDID--AATVAKILRANGIVDTEPYRKL-GRNQLRVAMFPAIDPDDVEALT 351 (361)
T ss_pred HHHhCCCcccCCCChhhcccceEEEEC-CCccC--HHHHHHHHHHCCCeeccCcccc-CCCcEEEEcCCCCCHHHHHHHH
Confidence 9999987776642 1 1244555 24333 5678888888876542221 12 2458999999999999999999
Q ss_pred HHHHHHHHH
Q psy11047 686 NEIRNTATE 694 (943)
Q Consensus 686 ~~I~~~~~~ 694 (943)
++|+++.++
T Consensus 352 ~al~~~~~~ 360 (361)
T TIGR01366 352 ECVDWVVER 360 (361)
T ss_pred HHHHHHHhh
Confidence 999997654
No 72
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.35 E-value=2.6e-10 Score=129.47 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+....+|..+++++++++|.+.. -+++++||+|+..++.+. + .+| -.|+
T Consensus 66 ~~~~~~~e~~~~~~la~~~g~~~~-----------~i~~~sgt~al~~~l~~l----~------~~g---------d~Vl 115 (416)
T PRK00011 66 CEYVDVVEQLAIDRAKELFGAEYA-----------NVQPHSGSQANAAVYFAL----L------KPG---------DTIL 115 (416)
T ss_pred chHHHHHHHHHHHHHHHHhCCCce-----------eeecCCchHHHHHHHHHh----c------CCC---------CEEE
Confidence 356778888899999999998643 244456788887665432 1 122 2466
Q ss_pred ecCCCchHHHH---HHHHC--CccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 306 CSDQAHSSVEK---AGLIG--LVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 306 ~S~~aHySv~K---Aa~LG--~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
++..+|.+..- +..++ +.+++.++.+ +++.+|++++++.|+... |.+|+.+ .++.|...|+++|.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~k~v~~~--~~~~~~~~~~~~I~~- 187 (416)
T PRK00011 116 GMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHK-----PKLIIAG--ASAYSRPIDFKRFRE- 187 (416)
T ss_pred EeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcC-----CCEEEEC--CCcCCCccCHHHHHH-
Confidence 77777765321 11222 2366777776 468999999999997531 4444443 245677778999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|+|++.+
T Consensus 188 -------------------la~~~~~-------~livD~a~~~g 205 (416)
T PRK00011 188 -------------------IADEVGA-------YLMVDMAHIAG 205 (416)
T ss_pred -------------------HHHHcCC-------EEEEECcchhc
Confidence 9999999 99999997644
No 73
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.33 E-value=7.1e-10 Score=125.55 Aligned_cols=294 Identities=11% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+.+++++|.+ ..+++++|++||..++.+++.. . +..+|++....|.|
T Consensus 93 ~~Le~~la~~~g~~------------~~l~~~sG~~an~~ai~~l~~~--------~---------~~~~v~~~~~~h~s 143 (402)
T TIGR01821 93 VELEAELADLHGKE------------SALVFTSGYVANDATLATLAKI--------I---------PGCVIFSDELNHAS 143 (402)
T ss_pred HHHHHHHHHHhCCC------------eEEEECchHHHHHHHHHHhhCC--------C---------CCCEEEEcchHhHH
Confidence 34445678888853 3578888899999888765421 0 12356666678999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
+..++.+....+..++. .|.+++++.++.... ..+.+|+.....+.+|.+-|+++|.+
T Consensus 144 ~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~--~~~~~v~~e~~~~~~G~~~~l~~i~~--------------- 201 (402)
T TIGR01821 144 MIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSVDP--NRPKIIAFESVYSMDGDIAPIEEICD--------------- 201 (402)
T ss_pred HHHHHHHcCCeEEEECC-----CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHH---------------
Confidence 88877544335544443 368888888874321 13567777778888999999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL 473 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi 473 (943)
+|++||+ |++||.|++.+ .+- + .|.-.. . ..++
T Consensus 202 -----l~~~~~~-------~livDea~~~G-~~g-~----------------------------~g~g~~-~----~~~~ 234 (402)
T TIGR01821 202 -----LADKYGA-------LTYLDEVHAVG-LYG-P----------------------------RGGGIA-E----RDGL 234 (402)
T ss_pred -----HHHHcCC-------EEEEeCccccc-ccC-C----------------------------CCCccc-h----hccC
Confidence 9999999 99999999733 110 0 000011 0 1122
Q ss_pred -CCeeEEEEcCCCccCccCc-----chhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHH
Q psy11047 474 -GRAQNFTIVPSSLLRVKNS-----GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 474 -e~ADSItiDpHK~L~vr~~-----~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~ 547 (943)
...|-+...+.|.++.-.. ..+.+ ++..... .+....+ ..++.+.+.+..+ +.+++
T Consensus 235 ~~~~div~~t~sKa~g~~GG~i~~~~~~~~-------~l~~~~~-------~~~~t~~--~~~~~~aaa~aaL--~~~~~ 296 (402)
T TIGR01821 235 MHRIDIIEGTLAKAFGVVGGYIAASRKLID-------AIRSYAP-------GFIFTTS--LPPAIAAGATASI--RHLKE 296 (402)
T ss_pred CCCCeEEEEechhhhccCCceeecCHHHHH-------HHHHhCc-------CceecCc--CCHHHHHHHHHHH--HHhhc
Confidence 3458777788998773211 01111 1110000 0000111 1111112222211 11110
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
. ..+ ++. ..++++++.+.|++. +++++. +.
T Consensus 297 ~-~~~-----------------------~~~------------------------~~~~~~~l~~~L~~~-g~~~~~-~~ 326 (402)
T TIGR01821 297 S-QDL-----------------------RRA------------------------HQENVKRLKNLLEAL-GIPVIP-NP 326 (402)
T ss_pred C-HHH-----------------------HHH------------------------HHHHHHHHHHHHHHc-CCCcCC-CC
Confidence 0 000 000 235667777777765 566553 46
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
.+++.+.+.. ......+.++|..+..+++.+.. -.+...+|++++...|++||+++++.|+++.++
T Consensus 327 ~~i~~i~~~~-~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 327 SHIVPVIIGD-AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred CCEEEEEeCC-HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 7788776642 22356788888655334555421 234568999999999999999999999887543
No 74
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.33 E-value=9.7e-10 Score=122.11 Aligned_cols=296 Identities=11% Similarity=-0.018 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+...+.+++++++|.+ ..+++++|+++++.++.+. . .+| -.|++++..
T Consensus 84 ~~~~~l~~~la~~~~~~------------~~i~~~~g~~~~~~~l~~~----~------~~g---------d~V~~~~~~ 132 (385)
T PRK05958 84 PAHEALEEELAEWFGAE------------RALLFSSGYAANLAVLTAL----A------GKG---------DLIVSDKLN 132 (385)
T ss_pred HHHHHHHHHHHHHhCCC------------cEEEECcHHHHHHHHHHHh----C------CCC---------CEEEEeCcc
Confidence 34455677888888843 3578888999987655321 1 122 246678899
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
|.+...++.+.+..++.++. .|.+.+++.++.... .+.+++...-.+.+|.+.|+++|.+
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~~---~~~lvi~~~~~~~~G~~~~l~~i~~------------ 192 (385)
T PRK05958 133 HASLIDGARLSRARVRRYPH-----NDVDALEALLAKWRA---GRALIVTESVFSMDGDLAPLAELVA------------ 192 (385)
T ss_pred CHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhccC---CCeEEEEEecccCCCCcCCHHHHHH------------
Confidence 99998888665556777765 378999998875311 1445554445567899999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ |+++|.+|+.+ .+ .. .|..... ...+
T Consensus 193 --------ia~~~~~-------~li~De~~~~g-~~--~~---------------------------~g~~~~~--~~~~ 225 (385)
T PRK05958 193 --------LARRHGA-------WLLVDEAHGTG-VL--GP---------------------------QGRGLAA--EAGL 225 (385)
T ss_pred --------HHHHhCC-------EEEEECccccc-cc--CC---------------------------CCCchHH--hhCC
Confidence 9999999 99999999644 22 00 0000000 0001
Q ss_pred cCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHI 549 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I 549 (943)
.. ..-+-+..++||+++......+ ..+.++..-.. ....+...++-. ..+..++.+++.+... .+..
T Consensus 226 ~~-~~~~i~~~s~sK~~~~~Gg~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~ 293 (385)
T PRK05958 226 AG-EPDVILVGTLGKALGSSGAAVL-----GSETLIDYLIN----RARPFIFTTALPPAQAAAARAALRILRRE--PERR 293 (385)
T ss_pred CC-CCceEEEEechhhcccCCcEEE-----cCHHHHHHHHH----hCccceecCCCCHHHHHHHHHHHHHHhcC--HHHH
Confidence 11 1123557889999984321111 01111100000 000011111111 1122222333322110 1111
Q ss_pred HHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCcc
Q psy11047 550 REIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLG 629 (943)
Q Consensus 550 ~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~ 629 (943)
++ ..++++++.+.|++. ++++. ++..+
T Consensus 294 ~~---------------------------------------------------~~~~~~~l~~~L~~~-~~~~~-~~~~~ 320 (385)
T PRK05958 294 ER---------------------------------------------------LAALIARLRAGLRAL-GFQLM-DSQSA 320 (385)
T ss_pred HH---------------------------------------------------HHHHHHHHHHHHHHc-CCCcC-CCCCC
Confidence 22 234556666666654 45554 45778
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
++.|.+++ .....++.++|.++|.+ +.+.. -.+..++|++++..+++++++++++.|+++
T Consensus 321 ~~~~~~~~-~~~~~~~~~~l~~~gI~-v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 321 IQPLIVGD-NERALALAAALQEQGFW-VGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred EEEEEeCC-HHHHHHHHHHHHHCCce-EecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 88988753 22356788888888754 43311 124568999999999999999999998764
No 75
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.32 E-value=2.1e-10 Score=129.27 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=89.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...+...++|..+.+++++++|.+.. -++.+|||+|+..++.+- . .|| -.
T Consensus 58 ~~~~~~~~l~~~~~~~~~~~~g~~~~-----------~v~~~sgt~a~~~~l~~l----~------~~G---------d~ 107 (402)
T cd00378 58 GGCEYVDEIEDLAIERAKKLFGAEYA-----------NVQPHSGSQANLAVYFAL----L------EPG---------DT 107 (402)
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCce-----------eeecCCcHHHHHHHHHHh----c------CCC---------CE
Confidence 34566788898899999999998642 355557899998766542 1 122 23
Q ss_pred EEecCCCchHHHHH-----H-HHCCccEEEEec--CC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH
Q psy11047 304 AYCSDQAHSSVEKA-----G-LIGLVNMRYIES--DD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 304 V~~S~~aHySv~KA-----a-~LG~~~v~~Vp~--D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
|++++..|.+.... + ..|. ++..++. +. ++.+|++++++++.... +.+++.+. +.+|...|++
T Consensus 108 Vl~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~id~~~l~~~i~~~~-----~~~v~~~~--~~~~~~~~~~ 179 (402)
T cd00378 108 IMGLDLSHGGHLTHGSFTKVSASGK-LFESVPYGVDPETGLIDYDALEKMALEFK-----PKLIVAGA--SAYPRPIDFK 179 (402)
T ss_pred EEEecCccCccccccccccccccce-eEEEecCCcCcccCCcCHHHHHHHHHhCC-----CCEEEecC--cccCCCcCHH
Confidence 55566566443221 2 2332 4455554 32 68999999999986431 44444433 2457778999
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++ +|++||+ ++++|+++..
T Consensus 180 ~I~~--------------------l~~~~~~-------~li~D~a~~~ 200 (402)
T cd00378 180 RFRE--------------------IADEVGA-------YLLVDMAHVA 200 (402)
T ss_pred HHHH--------------------HHHhcCC-------EEEEEccchh
Confidence 9999 9999999 9999999643
No 76
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.29 E-value=1.4e-09 Score=123.63 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.+|+++|.+ ..+++++||+||..++...-. . .+| .+|+++...|.|+
T Consensus 95 ~Le~~la~~~g~~------------~~i~~~sG~~a~~~~i~~l~~-----~---~~g---------~~vi~~~~~h~s~ 145 (410)
T PRK13392 95 LLERELADLHGKE------------SALLFTSGYVSNDAALSTLGK-----L---LPG---------CVILSDALNHASM 145 (410)
T ss_pred HHHHHHHHHhCCC------------CEEEECcHHHHHHHHHHHHhc-----C---CCC---------CEEEEehhhhHHH
Confidence 3445678888864 246677779999887763210 0 111 2577777899999
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+.+..+..++.+ |.+.+++.++.... ..+.+|+.+...+.+|.+-|+++|.+
T Consensus 146 ~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~t~~v~i~~~~n~tG~~~~l~~i~~---------------- 202 (410)
T PRK13392 146 IEGIRRSGAEKQVFRHN-----DLADLEEQLASVDP--DRPKLIAFESVYSMDGDIAPIEAICD---------------- 202 (410)
T ss_pred HHHHHHcCCeEEEEeCC-----CHHHHHHHHHhccC--CCCEEEEEeCCCCCCcccccHHHHHH----------------
Confidence 88776544466666532 56677777764321 13667888888889999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.||+..
T Consensus 203 ----l~~~~~~-------~livDea~~~g 220 (410)
T PRK13392 203 ----LADRYNA-------LTYVDEVHAVG 220 (410)
T ss_pred ----HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999833
No 77
>PRK10534 L-threonine aldolase; Provisional
Probab=99.29 E-value=4.1e-10 Score=123.81 Aligned_cols=315 Identities=13% Similarity=0.093 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
+|.++..+.. .. .+...|...|...+||..+ ++++|.++ .++++||+++++.++.+..
T Consensus 13 ~~~~~~a~~~-~~-~~~~~Y~~~~~~~~L~~~l----a~~~g~~~------------~~v~~~g~~a~~~~l~~~~---- 70 (333)
T PRK10534 13 SRAMLEAMMA-AP-VGDDVYGDDPTVNALQDYA----AELSGKEA------------ALFLPTGTQANLVALLSHC---- 70 (333)
T ss_pred CHHHHHHHHh-cc-CCCcccCCCHHHHHHHHHH----HHHhCCCe------------EEEeCchHHHHHHHHHHhc----
Confidence 3555555443 22 2223344677788888765 67788754 4799999999998887531
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHH--H-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA--G-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA--a-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
.+| + .|+++...|.+..++ + .+|...++.++.++++.+|+++|++++.++..++..+.+|+.
T Consensus 71 ------~~g--------d-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 71 ------ERG--------E-EYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred ------CCC--------C-eeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 122 1 255677778654443 2 355456777887888999999999998653222112444444
Q ss_pred ecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeee
Q psy11047 361 GLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIR 440 (943)
Q Consensus 361 TaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR 440 (943)
+ ++.+|++.|.++|.+ +-.+|++||+ |+++|.||.-. .. ..
T Consensus 136 ~--np~~G~v~~~~~l~~-----------------i~~~~~~~~~-------~lvvDEA~~~~-~~-~~----------- 176 (333)
T PRK10534 136 E--NTHNGKVLPREYLKQ-----------------AWEFTRERNL-------ALHVDGARIFN-AV-VA----------- 176 (333)
T ss_pred e--cCCCCeecCHHHHHH-----------------HHHHHHHcCC-------eEEeeHHHHHH-HH-HH-----------
Confidence 3 456799988766543 1117899999 99999997521 10 00
Q ss_pred ecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCc-
Q psy11047 441 LLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH- 519 (943)
Q Consensus 441 ~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~- 519 (943)
....... +. ...|.++++++|.++..-+..+ ..++..+..- .....
T Consensus 177 ---------------------~~~~~~~-~~--~~~~~~~~s~SK~~~~~~G~~~----~~~~~~i~~~-----~~~~~~ 223 (333)
T PRK10534 177 ---------------------YGCELKE-IT--QYCDSFTICLSKGLGTPVGSLL----VGNRDYIKRA-----RRWRKM 223 (333)
T ss_pred ---------------------cCCCHHH-HH--hcCCEEEEEeEcCCCCcccceE----EcCHHHHHHH-----HHHHHH
Confidence 0001111 11 2346777789997764311111 0011111000 00000
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCC
Q psy11047 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 599 (943)
Q Consensus 520 ~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p 599 (943)
++.. +.........|...+++..+++. +
T Consensus 224 ~~~~-------~~~~~~~~a~~~~~l~~~~~~~~-----------------------~---------------------- 251 (333)
T PRK10534 224 TGGG-------MRQAGILAAAGLYALKHNVARLQ-----------------------E---------------------- 251 (333)
T ss_pred hCCc-------hhhHHHHHHHHHHHHHhhHHHHH-----------------------H----------------------
Confidence 0000 00000122223333332222210 0
Q ss_pred cHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHH
Q psy11047 600 KFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTND 679 (943)
Q Consensus 600 ~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~e 679 (943)
..+.++++.+.|.+. ++++.. +..|.+.+++.+. ....+.+.|.++|.+ +.+ + ..+|+..++++|.+
T Consensus 252 ---~~~~r~~l~~~L~~~-g~~~~~-~~~nfv~~~~~~~--~~~~~~~~l~~~gi~-v~~----~-~~~rl~~~~r~t~e 318 (333)
T PRK10534 252 ---DHDNAAWLAEQLREA-GADVMR-QDTNMLFVRVGEE--QAAALGEYMRERNVL-INA----S-PIVRLVTHLDVSRE 318 (333)
T ss_pred ---HHHHHHHHHHHHHhC-CCccCC-CCceEEEEECCch--hHHHHHHHHHHcCee-ecC----C-ceEEEEEEeCCCHH
Confidence 123456777788776 777654 4799998888642 246777888888864 333 2 25899777788999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTA 692 (943)
Q Consensus 680 dId~ll~~I~~~~ 692 (943)
+++++++.|++..
T Consensus 319 ~~~~~~~~l~~~~ 331 (333)
T PRK10534 319 QLAEVVAHWRAFL 331 (333)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999997653
No 78
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.29 E-value=9.2e-10 Score=128.58 Aligned_cols=318 Identities=13% Similarity=0.053 Sum_probs=179.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcE-EE-cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGG-VL-QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~G-vf-TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
....++|..+.+...++|+..+.. .+ .+ .++||.||+.++.+- + .|| -.|
T Consensus 76 ~~~d~lE~~~~~~~~~~f~~~~~~---------~~~nv~~~SG~~AN~av~~aL----~------~pg---------D~I 127 (475)
T PLN03226 76 EYIDQIETLCQKRALEAFRLDPEK---------WGVNVQPLSGSPANFAVYTAL----L------QPH---------DRI 127 (475)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcce---------eEEecCcCchHHHHHHHHHHh----C------CCC---------CEE
Confidence 357899999999999999987642 21 12 388999998776652 1 122 234
Q ss_pred Ee---cC---CCchHHHHHHHHCCccEE----EEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH
Q psy11047 305 YC---SD---QAHSSVEKAGLIGLVNMR----YIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY 373 (943)
Q Consensus 305 ~~---S~---~aHySv~KAa~LG~~~v~----~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL 373 (943)
++ +. ..|-++..++.++...+. ....+ ++|.+|.++|++.+... .|.+|++ |.+.+|..-|+
T Consensus 128 l~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~-----~pklIv~--~~S~~s~~~D~ 200 (475)
T PLN03226 128 MGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF-----RPKLIIA--GASAYPRDWDY 200 (475)
T ss_pred EECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc-----CCeEEEE--ecCcCCCccCH
Confidence 44 23 345454444444332221 22233 67999999999998753 2555554 34457888889
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHH
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLK 453 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~ 453 (943)
++|++ +|+++|. +++||+|++.+ .+ +..
T Consensus 201 a~i~~--------------------ia~~~ga-------~LlvD~AH~~G-li--~~~---------------------- 228 (475)
T PLN03226 201 ARMRK--------------------IADKVGA-------LLMCDMAHISG-LV--AAQ---------------------- 228 (475)
T ss_pred HHHHH--------------------HHHHcCC-------EEEEEchhhhC-cc--cCC----------------------
Confidence 99999 9999999 99999999877 22 100
Q ss_pred HhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccc--cCCCCcccccCccccCCCC--Ccc
Q psy11047 454 RLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLR--HENSGLAIDYMHWQIPLSK--RFR 529 (943)
Q Consensus 454 ~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~--~~~~g~~~d~~~~tie~SR--rfr 529 (943)
..+ .-++.+|.++.+.||||+-+.+..+.- ...++. .++.+...++.. .+..+| .+.
T Consensus 229 --------~~~------~p~~~~Div~~t~hK~L~GP~Gg~I~~----~~~~~~~~~~g~~~~~d~~~-~i~~a~~~~~~ 289 (475)
T PLN03226 229 --------EAA------SPFEYCDVVTTTTHKSLRGPRGGMIFF----RKGPKPPKGQGEGAVYDYED-KINFAVFPGLQ 289 (475)
T ss_pred --------CCC------CCCCCCeEEEecCcccccCCCceEEEE----chhhcccccCCCccHHHHHH-HhccccCCccC
Confidence 011 012468999999999995222222200 000110 000110001100 111111 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHH
Q psy11047 530 ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 609 (943)
Q Consensus 530 ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~ 609 (943)
+ ++...+..++...++.+++ .+...+.+ +..+++++
T Consensus 290 g-----~p~~~~iaal~aAl~~i~~---------------~~~~~~~~------------------------~~~~na~~ 325 (475)
T PLN03226 290 G-----GPHNHTIAALAVALKQAMT---------------PEFKAYQK------------------------QVKANAAA 325 (475)
T ss_pred C-----CchHHHHHHHHHHHHHHhC---------------cCHHHHHH------------------------HHHHHHHH
Confidence 1 1223334555555555321 01111111 14778999
Q ss_pred HHHHHhCCCCeEEecC-CCccEEEEEecCCChHHHHHHHHHhccCcEEEeec-----ccCCCcEEEE----eecCCCCHH
Q psy11047 610 FEALVLGDPRFEIPAA-RHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA-----SLRIQGLGRA----QNFTRTTND 679 (943)
Q Consensus 610 l~~~L~~~p~~eIl~~-~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t-----~~~g~~~lR~----v~~~~tt~e 679 (943)
|++.|.+ .+++++.+ ...+++.+.+.....-..++.+.|...|.+.-..+ ..-.+..+|+ +++...+++
T Consensus 326 L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~ 404 (475)
T PLN03226 326 LANRLMS-KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEK 404 (475)
T ss_pred HHHHHHh-CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHH
Confidence 9998888 69999863 22455555543222123456666777775432111 0012346898 678888999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATEI 695 (943)
Q Consensus 680 dId~ll~~I~~~~~~l 695 (943)
|++++.+.|.++....
T Consensus 405 d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 405 DFEKVAEFLHRAVTIA 420 (475)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876653
No 79
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.28 E-value=3.1e-09 Score=118.80 Aligned_cols=130 Identities=9% Similarity=-0.037 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+...+.+++++++|.++ .+++++|+++|..++.+. + .|| -.|++.+
T Consensus 85 ~~~l~~~l~~~la~~~g~~~------------~i~~tsG~~a~~~~~~~l----~------~~g---------d~vi~~~ 133 (397)
T PRK06939 85 TQDLHKELEEKLAKFLGTED------------AILYSSCFDANGGLFETL----L------GKE---------DAIISDA 133 (397)
T ss_pred CcHHHHHHHHHHHHHhCCCc------------EEEEcChHHHHHHHHHHh----C------CCC---------CEEEEEh
Confidence 34566778899999998652 344444588887665331 1 122 2477788
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
.+|++...++.+...+++.++. +|+++|++.++.....+..+.+|+...-.+.+|.+.++++|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~---------- 198 (397)
T PRK06939 134 LNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICD---------- 198 (397)
T ss_pred hhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHH----------
Confidence 9999998887543445555554 5899999988764322223666665555667899999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+|++||+ |+++|.+|+
T Consensus 199 ----------la~~~~~-------~li~De~~~ 214 (397)
T PRK06939 199 ----------LADKYDA-------LVMVDDSHA 214 (397)
T ss_pred ----------HHHHhCC-------EEEEECccc
Confidence 9999999 999999995
No 80
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.28 E-value=1.8e-09 Score=122.27 Aligned_cols=297 Identities=12% Similarity=-0.022 Sum_probs=169.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.||+++|.+ ..++.++|++||..++..++.. . ++.+|+.....|.|+
T Consensus 95 ~l~~~la~~~g~~------------~~~~~~sG~~an~~ai~~l~~~--------~---------~~~~i~~~~~~h~s~ 145 (407)
T PRK09064 95 ELERELADLHGKE------------AALVFTSGYVSNDATLSTLAKL--------I---------PDCVIFSDELNHASM 145 (407)
T ss_pred HHHHHHHHHhCCC------------cEEEECcHHHHHHHHHHHHhCC--------C---------CCCEEEEeCcchHHH
Confidence 3445667888753 2467777889999887765321 0 123566677789888
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+....+..++. .|+++|++.++.... ..+.+|+.....+.+|.+.|+++|.+
T Consensus 146 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~--~~~~~v~~~~v~s~~G~~~~l~~i~~---------------- 202 (407)
T PRK09064 146 IEGIRRSRCEKHIFRH-----NDVAHLEELLAAADP--DRPKLIAFESVYSMDGDIAPIAEICD---------------- 202 (407)
T ss_pred HHHHHHcCCcEEEECC-----CCHHHHHHHHHhccC--CCCeEEEEeCCCCCCccccCHHHHHH----------------
Confidence 7777544445555543 278899988874311 12567777777788899999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC-
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL- 473 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi- 473 (943)
+|++||+ +++||.||+.+ .+ -+ .|.-+. . ..++
T Consensus 203 ----l~~~~~~-------~livDEa~~~G-~~-g~----------------------------~g~g~~-~----~~~~~ 236 (407)
T PRK09064 203 ----LADKYNA-------LTYLDEVHAVG-MY-GP----------------------------RGGGIA-E----RDGLM 236 (407)
T ss_pred ----HHHHcCC-------EEEEECCCccc-cc-CC----------------------------CCCChH-H----hcCCC
Confidence 9999999 99999999732 11 00 000011 0 1122
Q ss_pred CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 474 GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR-FRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 474 e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr-frALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
+..|-++..++|.++......+... .-..++.... ..+....+.. ..+..+..+++.+-.. ....++
T Consensus 237 ~~~div~~t~sKa~g~~GG~~~~~~--~~~~~l~~~~-------~~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~- 304 (407)
T PRK09064 237 DRIDIIEGTLAKAFGVMGGYIAGSA--ALVDAVRSYA-------PGFIFTTSLPPAIAAAALASIRHLKES--NEERER- 304 (407)
T ss_pred CCCeEEEEecchhhhccCceEecCH--HHHHHHHHhC-------ccccccCcCCHHHHHHHHHHHHHHhcC--HHHHHH-
Confidence 3458887789998773221100000 0000111000 0011111111 1111112222221110 000111
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
..++++++.+.|.+. +++++. +..+++.
T Consensus 305 --------------------------------------------------~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~ 332 (407)
T PRK09064 305 --------------------------------------------------HQERAAKLKAALDAA-GIPVMP-NESHIVP 332 (407)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHc-CCCCCC-CCCCEEE
Confidence 245667777777764 566654 4577888
Q ss_pred EEecCCChHHHHHHHHHhccCcEEEeecc----cCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGENILTEKLLKRLNSKGRLHCVPAS----LRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 633 Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~----~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
|.+.+ ......+.++|..+..+++.+.. -.+...+|++++..+|++|++++++.|+++..+
T Consensus 333 i~~~~-~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 333 VMVGD-PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred EEeCC-HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 87743 23356788887654334554321 124468999999999999999999999887543
No 81
>PLN02822 serine palmitoyltransferase
Probab=99.27 E-value=1.5e-08 Score=118.61 Aligned_cols=427 Identities=11% Similarity=0.076 Sum_probs=227.7
Q ss_pred eeccccCchhHHHHHHHHHhhccceeeecCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCC
Q psy11047 85 IFAQFGPGIRTILITLVICLSLGKIFVVNPQSRKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESA 164 (943)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~fl~p~~~~~~~e~fr~~~~~~vd~i~dyl~~~~~~pV~p~~~p~~l~~~l~~~l 164 (943)
+++++.+..|++++..++.-.+- .++.++..+- . +.+.++-+|.+.+ ....-|..|+.++..- ...+ .
T Consensus 28 ~~~~~~~~~~~~~e~~l~~~~~~--~~~~~~~~~~---~-~~~~~~~~~~l~~---~~~p~~l~~~~~~~~~-~~~~--~ 95 (481)
T PLN02822 28 VVFGVHIGGHLVVEGLLIVVIVF--LLSQKSYKPP---K-RPLTEKEIDELCD---EWTPEPLIPPITEEMR-PEPP--V 95 (481)
T ss_pred eEeecCCCchhHHHHHHHHHHHH--HHHcCcCCCC---C-CCCCHHHHHHHHh---cCCCCCCCCCCchhcc-ccCC--c
Confidence 46777889999999887763321 1123333221 1 2444556666665 3334455555333211 1000 0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCCh---hHHHHHHHHHHHHH
Q psy11047 165 PVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSP---ACTELEIITMNWLG 241 (943)
Q Consensus 165 Pe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SP---aateLE~~Vi~wLa 241 (943)
=+.+++. .+. +. -....++.+..|.|+. ..|.+. +.+..++...+..+..++ .......++.+.|+
T Consensus 96 ~~~~~G~-~i~--~~---G~~~id~~s~~~lgl~----~~~~i~-ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La 164 (481)
T PLN02822 96 LESAAGP-HTI--IN---GKDVVNFASANYLGLI----GNEKIK-ESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIA 164 (481)
T ss_pred eecCCCC-eEE--EC---CceEEEeECCCcCCCC----CCHHHH-HHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHH
Confidence 0011110 000 00 0011122222222222 344443 444555544433222211 23455556667778
Q ss_pred HHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHC
Q psy11047 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG 321 (943)
Q Consensus 242 ~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG 321 (943)
+++|.++ ..+|++|++ ++..++.+. . .+ .-+|++....|+|+..++.+.
T Consensus 165 ~~~~~~~-----------~i~~s~G~~-a~~sai~a~----~------~~---------gd~Ii~d~~~H~s~~~~~~ls 213 (481)
T PLN02822 165 KFLGTPD-----------SILYSYGLS-TIFSVIPAF----C------KK---------GDIIVADEGVHWGIQNGLYLS 213 (481)
T ss_pred HHhCCCC-----------EEEECCHHH-HHHHHHHHh----C------CC---------CCEEEEeCCccHHHHHHHHHc
Confidence 8888654 356777666 564443321 1 11 224667888999999988776
Q ss_pred CccEEEEecCCCCCcCHHHHHHHHHHhhcc----CCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchH
Q psy11047 322 LVNMRYIESDDKLSLRGDKLIEAIERDKKK----HLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFP 397 (943)
Q Consensus 322 ~~~v~~Vp~D~~grmD~daLe~aI~~d~~k----G~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR 397 (943)
...++.++.+ |.+.|+..+++.... .....+|+...-..++|.+-|+++|.+
T Consensus 214 ~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~------------------- 269 (481)
T PLN02822 214 RSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVR------------------- 269 (481)
T ss_pred CCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHH-------------------
Confidence 6677888765 456666666543221 112256666555566899999999999
Q ss_pred HHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC--CC
Q psy11047 398 NFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL--GR 475 (943)
Q Consensus 398 ~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi--e~ 475 (943)
+|++||+ ++.+|-+|+-. .+ | .+|+-.... .|+ ..
T Consensus 270 -l~~k~~~-------~LIvDEa~s~g-vl--------G---------------------~~G~G~~e~-----~~v~~~~ 306 (481)
T PLN02822 270 -LKEKYRF-------RVLLDESNSFG-VL--------G---------------------KSGRGLSEH-----FGVPIEK 306 (481)
T ss_pred -HHHHcCC-------EEEEECCcccc-cc--------C---------------------CCCCChHHH-----cCCCCCC
Confidence 9999999 99999999733 21 0 001111111 133 35
Q ss_pred eeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHH---HHHHHH
Q psy11047 476 AQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQ---KHIREI 552 (943)
Q Consensus 476 ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~---~~I~~~ 552 (943)
.|-++.+.+|.++...+..+. ....+.+... ....+++..+-+ +..+.+++.++ +.++ +...+
T Consensus 307 ~dii~~s~sKalg~~GG~i~g-----~~~ii~~~~~----~~~~~~fsa~lP--p~~~~Aa~~aL--~~l~~~~~~~~~- 372 (481)
T PLN02822 307 IDIITAAMGHALATEGGFCTG-----SARVVDHQRL----SSSGYVFSASLP--PYLASAAITAI--DVLEDNPSVLAK- 372 (481)
T ss_pred CeEEEecchhhhhhCCeEEEc-----CHHHHHHHHh----cCCceeeccccC--HHHHHHHHHHH--HHHHhCHHHHHH-
Confidence 788899999998732221110 0011110000 000112211111 11112222222 1111 11111
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 632 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~ 632 (943)
-.++.++|.+.|.+.+++++..++...++.
T Consensus 373 --------------------------------------------------l~~~~~~l~~~L~~~~g~~~~~~~~spi~~ 402 (481)
T PLN02822 373 --------------------------------------------------LKENIALLHKGLSDIPGLSIGSNTLSPIVF 402 (481)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhcCCcccCCCCCCCEEE
Confidence 245677888888888888887777888998
Q ss_pred EEecCC-------ChHHHHHHHHHh-ccCcEEEeecc---c---CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 633 IRLLGE-------NILTEKLLKRLN-SKGRLHCVPAS---L---RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 633 Fr~~g~-------n~l~~~Ll~~L~-~~G~~~~s~t~---~---~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+++.+. ......+.++|. ++|. ++++.. . ..+..+|++++...|++||+++++.|+++...++.
T Consensus 403 l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV-~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 403 LHLEKSTGSAKEDLSLLEHIADRMLKEDSV-LVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred EEeCCCcccccchHHHHHHHHHHHHhcCCE-EEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 888642 122457788876 6675 555321 1 12346999888888999999999999999887653
No 82
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.26 E-value=2e-11 Score=134.17 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
.|+++..+ ...|.....|..+|.+.++|..+ +++||.+. .+|+++||+||.+|+.+..
T Consensus 8 ~~~m~~a~--~~a~~gd~~Yg~D~~~~~l~~~i----~~l~g~e~------------a~f~~sGT~An~~al~~~~---- 65 (290)
T PF01212_consen 8 TPAMLEAM--AAANVGDDAYGEDPTTARLEERI----AELFGKEA------------ALFVPSGTMANQLALRAHL---- 65 (290)
T ss_dssp -HHEEHHH--HHTTSB-CCTTSSHHHHHHHHHH----HHHHTSSE------------EEEESSHHHHHHHHHHHHH----
T ss_pred CHHHHHHH--HccccCCcccCCChhHHHHHHHH----HHHcCCCE------------EEEeCCCChHHHHHHHHHH----
Confidence 34555444 33455455799999999998755 78999874 5799999999999987643
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHH---HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG---LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa---~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
+ +.-.|+|.+.+|..+.++. .+++.+++.|+.+++|.|++++|++.++......-.|.+|+.
T Consensus 66 ~---------------~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~l 130 (290)
T PF01212_consen 66 R---------------PGESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSL 130 (290)
T ss_dssp H---------------TTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEE
T ss_pred h---------------cCCceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEE
Confidence 1 1234788999999987754 367778999998777999999999999985442233455555
Q ss_pred ecCCCcc--cccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceee
Q psy11047 361 GLALPAF--LVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVV 438 (943)
Q Consensus 361 TaGTT~t--GaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~Vc 438 (943)
+ -||+. |.+-++++|.+ +..+|++||+ .+|+|||.-+.++. .++
T Consensus 131 e-~t~~~~GG~~~s~~el~a-----------------i~~~a~~~gl-------~lhmDGARl~~a~~------~~~--- 176 (290)
T PF01212_consen 131 E-NTTELAGGTVYSLEELRA-----------------ISELAREHGL-------PLHMDGARLANAAA------ALG--- 176 (290)
T ss_dssp E-SSBTTTTSB---HHHHHH-----------------HHHHHHHHT--------EEEEEETTHHHHHC------HHH---
T ss_pred E-ecCcCCCCeeCCHHHHHH-----------------HHHHHHhCce-------EEEEehhhHHHhhh------ccc---
Confidence 4 55555 77766555444 2229999999 99999995332110 000
Q ss_pred eeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh
Q psy11047 439 IRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL 495 (943)
Q Consensus 439 FR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L 495 (943)
+ ..+... ..+|+++|++.|.++..-...|
T Consensus 177 ------------------------~-~~~e~~---~~~D~v~~~~tK~~g~~~Gavl 205 (290)
T PF01212_consen 177 ------------------------V-SLAEIA---AGADSVSFGGTKNGGAPGGAVL 205 (290)
T ss_dssp ------------------------H-HHHHHH---TTSSEEEEETTSTT-SSSEEEE
T ss_pred ------------------------c-cHHHHh---hhCCEEEEEEEcccccccceEE
Confidence 0 112222 5789999999999986555443
No 83
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.26 E-value=1.9e-09 Score=121.62 Aligned_cols=158 Identities=11% Similarity=0.025 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+..++......|...+...+++..+.+|+.+.+|.+-. ....++|+|||+|+..++.+. .
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~l----~-- 114 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD--------VDNVIVTAGAYEATYLAFESL----L-- 114 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------cccEEEeCChHHHHHHHHHHh----c--
Confidence 44555555555443334544455678888888888888775421 136899999999987766542 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|++.+-+|.+...++...+.+++.++++. ++.+|+++|++.++.. +.+|+.+..
T Consensus 115 ----~~g---------~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~i~~p 175 (391)
T PRK08361 115 ----EEG---------DEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR------TRMIVINYP 175 (391)
T ss_pred ----CCC---------CEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc------cEEEEEeCC
Confidence 122 2466778888888877755445888888875 4579999999988753 456677778
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+|.+-| +++|.+ +|+++++ ++++|.+|+.+
T Consensus 176 ~NPtG~~~~~~~~~~l~~--------------------~~~~~~~-------~ii~De~y~~~ 211 (391)
T PRK08361 176 NNPTGATLDKEVAKAIAD--------------------IAEDYNI-------YILSDEPYEHF 211 (391)
T ss_pred CCCCCcCcCHHHHHHHHH--------------------HHHHcCe-------EEEEEcccccc
Confidence 888999988 777777 8999999 99999999765
No 84
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.25 E-value=3.2e-09 Score=120.67 Aligned_cols=127 Identities=11% Similarity=0.009 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHH-HHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLA-GRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~a-AR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
..++-+.+++++|.+ ..+|+++|++||..|+.+ ++. .+ .-+|+++...|
T Consensus 92 ~~~le~~la~~~g~~------------~~~~~~SG~~An~~ai~~l~~~---------~~---------g~~I~~~~~~H 141 (406)
T PRK13393 92 HVLLEAELADLHGKE------------AALLFTSGYVSNWAALSTLGSR---------LP---------GCVILSDELNH 141 (406)
T ss_pred HHHHHHHHHHHhCCC------------cEEEeCCcHHHHHHHHHHhhcC---------CC---------CCEEEEccchh
Confidence 344446778888864 356677778899888874 221 01 12577788899
Q ss_pred hHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
.|+..++.+....++.++. .|++.+++.+..... ..+.+|+.....+.+|.+-|+++|.+
T Consensus 142 ~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~~G~~~~l~~i~~------------- 201 (406)
T PRK13393 142 ASMIEGIRHSRAEKRIFRH-----NDPADLERKLSDLDP--HRPKLVAFESVYSMDGDIAPIAEICD------------- 201 (406)
T ss_pred HHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhccC--CCCEEEEEcCCCCCCCchhCHHHHHH-------------
Confidence 9998888654446666654 267888887764311 12567777777788899999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.|++.+
T Consensus 202 -------l~~~~~~-------~livDea~~~g 219 (406)
T PRK13393 202 -------VAEKHGA-------MTYLDEVHAVG 219 (406)
T ss_pred -------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999743
No 85
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.22 E-value=8e-09 Score=115.41 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
.+.+.+...+......|..+....++...+.+|+.+.+|.+-. ....++|+||++++..++.+..
T Consensus 41 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~--------~~~i~~t~g~~~al~~~~~~l~------- 105 (382)
T PRK06108 41 FIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATP--------PERIAVTSSGVQALMLAAQALV------- 105 (382)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcC--------cceEEEeCChHHHHHHHHHHhc-------
Confidence 3444444444333233555556678888899999998884322 1357899999999876655321
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC---CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD---KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| + .|++.+-+|.....++...+.+++.+|.+. ++.+|+++|++.+... +.+++.+..
T Consensus 106 ---~~g--------d-~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p 167 (382)
T PRK06108 106 ---GPG--------D-EVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSP 167 (382)
T ss_pred ---CCC--------C-EEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECC
Confidence 122 2 356677788877777754445888888863 4579999999888542 556667777
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+|.+-+ +++|.+ +|+++|+ |+++|.+|+.+
T Consensus 168 ~NPtG~~~~~~~~~~l~~--------------------~~~~~~~-------~li~De~y~~~ 203 (382)
T PRK06108 168 NNPTGWTASRDDLRAILA--------------------HCRRHGL-------WIVADEVYERL 203 (382)
T ss_pred CCCCCcccCHHHHHHHHH--------------------HHHHCCc-------EEEEehhhhhh
Confidence 888897754 677777 8999999 99999999876
No 86
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.21 E-value=1.2e-08 Score=114.73 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
.+.+.+...++.....|........++..+.+|+.+..|..-. ....++|+|+|+|+..++.+..
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~i~~~~g~~~a~~~~~~~~~------- 112 (393)
T PRK05764 48 HIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD--------PSQVIVTTGAKQALYNAFMALL------- 112 (393)
T ss_pred HHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC--------HHHEEEeCCcHHHHHHHHHHhc-------
Confidence 3445555555433334555555678888888888777664321 1357999999999877665421
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++++-+|.....++..-+.+++.++.+. .+.+|++++++.+... +.+|+.+.-+
T Consensus 113 ---~~g---------d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~ 174 (393)
T PRK05764 113 ---DPG---------DEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPK------TKALILNSPS 174 (393)
T ss_pred ---CCC---------CEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCcc------ceEEEEECCC
Confidence 112 2467778888887777754344788888863 4679999999988542 4466666677
Q ss_pred Ccccccc---cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVD---SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaID---pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+- ++++|.+ +|++||+ |+.+|.+|+.+
T Consensus 175 NPtG~~~~~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 209 (393)
T PRK05764 175 NPTGAVYSPEELEAIAD--------------------VAVEHDI-------WVLSDEIYEKL 209 (393)
T ss_pred CCCCcccCHHHHHHHHH--------------------HHHHCCc-------EEEEeccccce
Confidence 7789874 4778888 9999999 99999999765
No 87
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.20 E-value=6.6e-09 Score=114.70 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.+|+++|.+.+ ..++|+|+|+++..++.+. . .+| -.|++++-++...
T Consensus 58 ~lr~~ia~~~~~~~~----------~i~~~~G~~~~l~~~~~~l----~------~~g---------d~v~~~~p~y~~~ 108 (346)
T TIGR01141 58 ELKQALADYYGVDPE----------QILLGNGSDEIIELLIRAF----L------EPG---------DAVLVPPPTYSMY 108 (346)
T ss_pred HHHHHHHHHhCcChH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCCHHHH
Confidence 456677888887543 5789999999975554432 1 122 2355555444434
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+++++++.+|+++|++.+... +.+|+.+..++.+|.+-|++++.+
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~---------------- 166 (346)
T TIGR01141 109 EISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEA---------------- 166 (346)
T ss_pred HHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 4444443458889999888999999999876432 556777778889999999999988
Q ss_pred chHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+.+ |+ ++.+|.+|+..
T Consensus 167 ----l~~~~~~~~-------~ii~D~~y~~~ 186 (346)
T TIGR01141 167 ----VLERTPEDA-------LVVVDEAYGEF 186 (346)
T ss_pred ----HHHhCCCCc-------EEEEECchhhh
Confidence 88776 88 99999999754
No 88
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.19 E-value=2e-08 Score=112.39 Aligned_cols=130 Identities=9% Similarity=-0.052 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+-..+.+++++++|.+. .++.++|+++++.++.+.. .+| -.|++++
T Consensus 76 ~~~l~~~l~~~l~~~~g~~~------------~i~~~sG~~a~~~a~~~~~----------~~g---------d~vi~~~ 124 (385)
T TIGR01825 76 TLRLHEELEEKLAKFKKTEA------------ALVFQSGFNTNQGVLSALL----------RKG---------DIVLSDE 124 (385)
T ss_pred CcHHHHHHHHHHHHHhCCCc------------EEEECcHHHHHHHHHHHhC----------CCC---------CEEEEEc
Confidence 34566677888999988542 2455556889886665421 122 2466788
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
..|.+...++.+....+..++ .+|++++++.|.+... ..+.+|+...-.+.+|.+.|+++|.+
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~---------- 187 (385)
T TIGR01825 125 LNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVE---------- 187 (385)
T ss_pred cccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHH----------
Confidence 899998877755444444443 5789999988876432 12556665555677899999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+++|.+|+.+
T Consensus 188 ----------l~~~~~~-------~li~De~~~~~ 205 (385)
T TIGR01825 188 ----------LAERYGA-------VTYVDDAHGSG 205 (385)
T ss_pred ----------HHHHhCC-------EEEEECccccc
Confidence 9999999 99999999654
No 89
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.19 E-value=2.7e-09 Score=124.52 Aligned_cols=319 Identities=12% Similarity=0.008 Sum_probs=178.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCC------------
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPE------------ 292 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pG------------ 292 (943)
..-...++|..+.+...++||.... -|=-.+||.||+.+.++--.-...+---..||
T Consensus 89 g~~~~d~ie~l~~~ra~~lf~a~~a-----------nvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~ 157 (493)
T PRK13580 89 GCQNVDTVEWEAAEHAKELFGAEHA-----------YVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDW 157 (493)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCcc-----------cccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhh
Confidence 4456789999999999999998753 34456789999887775321000000000011
Q ss_pred --chhhhcC-CceEEE-ecCCCchHHHHHH-HHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 293 --LEHAEIN-SRLVAY-CSDQAHSSVEKAG-LIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 293 --l~~~~i~-~~~vV~-~S~~aHySv~KAa-~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
++. .+. .+...+ .+.-.|.+..... ..|. -..+..++| ++|.+|.+++++.+.+. +..|+.+..++
T Consensus 158 ~~~~~-~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~------~plvii~g~S~ 230 (493)
T PRK13580 158 EALRA-ELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREF------KPLILVAGYSA 230 (493)
T ss_pred hhhhc-cCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhc------CCEEEEeCccc
Confidence 000 000 111111 2444555543222 2332 244555565 57999999999999875 34555556666
Q ss_pred cccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchh
Q psy11047 366 AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 445 (943)
Q Consensus 366 ~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~n 445 (943)
. +.+-|+++|.+ +|++||. ++.||+|++.+ .+ +.
T Consensus 231 ~-~~~~dl~~i~e--------------------ia~~~gA-------~L~VD~AH~~G-li--gg--------------- 264 (493)
T PRK13580 231 Y-PRRVNFAKLRE--------------------IADEVGA-------VLMVDMAHFAG-LV--AG--------------- 264 (493)
T ss_pred c-CCCcCHHHHHH--------------------HHHHcCC-------EEEEECchhhc-ee--cc---------------
Confidence 6 55778999999 9999999 99999999877 22 10
Q ss_pred hhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC-ccCcc-----hhhhhcccCccccccCCCCcccccCc
Q psy11047 446 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR-VKNSG-----ALHRTFNVEPLYLRHENSGLAIDYMH 519 (943)
Q Consensus 446 e~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-vr~~~-----~L~~af~~~p~YL~~~~~g~~~d~~~ 519 (943)
. ..+ .....+.++|.++.++||+|+ .+..- .+.+.+....+|+.+
T Consensus 265 --------------~-~~~---~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a~P~i~g----------- 315 (493)
T PRK13580 265 --------------K-VFT---GDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKGCPLVLG----------- 315 (493)
T ss_pred --------------c-cch---hhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhCCCcccC-----------
Confidence 0 000 001123578999999999994 22111 111111101122221
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCC
Q psy11047 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 599 (943)
Q Consensus 520 ~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p 599 (943)
++-.......-.++..+-...+.++.++
T Consensus 316 ----g~l~p~iAA~avAl~e~~~~ef~~y~~~------------------------------------------------ 343 (493)
T PRK13580 316 ----GPLPHVMAAKAVALAEARTPEFQKYAQQ------------------------------------------------ 343 (493)
T ss_pred ----CCccHHHHHHHHHHHHHhCccHHHHHHH------------------------------------------------
Confidence 1101100000001111111112222222
Q ss_pred cHHHHHHHHHHHHHHhCCCCeEEec-CCCccEEEEEecCCChHH-HHHHHHHhccCcEEEe----ecccCC---CcEEEE
Q psy11047 600 KFQSVRLAQKFEALVLGDPRFEIPA-ARHLGMVVIRLLGENILT-EKLLKRLNSKGRLHCV----PASLRI---QGLGRA 670 (943)
Q Consensus 600 ~~~~~~LA~~l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~-~~Ll~~L~~~G~~~~s----~t~~~g---~~~lR~ 670 (943)
-.+++++|++.|.+. +|.++. ..+..||.+.+.+. ..+ ..+.++|.+.|. ++. |+.-.+ ..-||+
T Consensus 344 ---l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~-~~~g~~a~~~L~e~GI-~vn~i~~Ptvp~g~~~~srLRI 417 (493)
T PRK13580 344 ---VVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSF-GLTGRQAESALLDAGI-VTNRNSIPSDPNGAWYTSGIRL 417 (493)
T ss_pred ---HHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHCCe-EEccccCCCCCCCCCCCceEEe
Confidence 256788888877664 787763 24678888888543 333 356668888885 443 332234 567999
Q ss_pred eecCC----CCHHHHHHHHHHHHHHHHH
Q psy11047 671 QNFTR----TTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 671 v~~~~----tt~edId~ll~~I~~~~~~ 694 (943)
.++.. .+++||+++.+.|.++...
T Consensus 418 g~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 418 GTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred ccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 66663 3699999999999887654
No 90
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.18 E-value=3e-08 Score=112.99 Aligned_cols=306 Identities=12% Similarity=0.059 Sum_probs=172.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+...++|+ .+|+++|.++ .++.++|+.+|+.++.+- . .+| -.|++
T Consensus 43 ~~~~~LE~----~lA~~~g~e~------------al~~~sG~~a~~~~i~~l----~------~~G---------D~Vl~ 87 (392)
T PLN03227 43 DAHLELEQ----CMAEFLGTES------------AILYSDGASTTSSTVAAF----A------KRG---------DLLVV 87 (392)
T ss_pred HHHHHHHH----HHHHHhCCCc------------EEEecCcHHHHHHHHHHh----C------CCC---------CEEEE
Confidence 34456665 4578888753 477888888887555431 1 122 35888
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhc--------cCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKK--------KHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~--------kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
++..|.|+..++.+....++.++.+ |.+.+++.++.... ....+.+|+.---....|.+-|+++|.+
T Consensus 88 ~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~ 162 (392)
T PLN03227 88 DRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVA 162 (392)
T ss_pred eccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHH
Confidence 9999999988876655566666543 24445543332210 0123556665545567799999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|++||+ ++++|.+++-. .+ | ..
T Consensus 163 --------------------l~~~~g~-------~livDe~~~~g-~~--------g---------------------~~ 185 (392)
T PLN03227 163 --------------------LKEEFHY-------RLILDESFSFG-TL--------G---------------------KS 185 (392)
T ss_pred --------------------HHHHcCC-------EEEEECccccc-cc--------C---------------------CC
Confidence 9999999 99999999722 21 0 01
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccCccCcc-----hhhhhcccCccccccCCCCcccccCccccCCCCCcchHHH
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSG-----ALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKL 533 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~-----~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALkl 533 (943)
|+.....+ -+.....+|.++.+.+|+++..-.. .+.+. +.... ..+++.++ ..++.+
T Consensus 186 G~g~~~~~--g~~p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~-------~~~~~-------~~~~~~~~--~~p~~~ 247 (392)
T PLN03227 186 GRGSLEHA--GLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDH-------QRLSG-------SGYCFSAS--APPFLA 247 (392)
T ss_pred CCcHHHHc--CCCCCCCceEEEeechhhhhccCcEEecCHHHHHH-------HHHhC-------cCccccCC--CCHHHH
Confidence 11111111 0111346799999999997622211 11111 10000 00111111 112333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 534 WFVIRNF-GIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 534 W~tLr~~-G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
|+++..+ ......+.+++ ..+++++|.+
T Consensus 248 ~aa~~al~~~~~~~~~~~~---------------------------------------------------l~~~~~~l~~ 276 (392)
T PLN03227 248 KADATATAGELAGPQLLNR---------------------------------------------------LHDSIANLYS 276 (392)
T ss_pred HHHHHHHHHHhcCHHHHHH---------------------------------------------------HHHHHHHHHH
Confidence 4443322 11111122222 1345566666
Q ss_pred HHhC--CC-------CeEEecCCCccEEEEEecCCCh--------HHHHHHHHHhccCcEEEe-e-c-----ccCCCcEE
Q psy11047 613 LVLG--DP-------RFEIPAARHLGMVVIRLLGENI--------LTEKLLKRLNSKGRLHCV-P-A-----SLRIQGLG 668 (943)
Q Consensus 613 ~L~~--~p-------~~eIl~~~~l~iV~Fr~~g~n~--------l~~~Ll~~L~~~G~~~~s-~-t-----~~~g~~~l 668 (943)
.|++ .| ++.+......+|+.+.+.+... ....+.+++.++|.+... + . ..-.+..+
T Consensus 277 ~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~i 356 (392)
T PLN03227 277 TLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCL 356 (392)
T ss_pred HHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceE
Confidence 6653 22 2222234567788888854211 124777888889975532 1 0 11225679
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 669 RAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 669 R~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
|++++...|++||+++++.|+++..+++-.
T Consensus 357 R~~~~~~~t~eei~~~~~~l~~~~~~~~~~ 386 (392)
T PLN03227 357 RVVANASHTREDIDKLLTVLGEAVEAILCK 386 (392)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998877533
No 91
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.17 E-value=1.3e-08 Score=111.82 Aligned_cols=125 Identities=10% Similarity=-0.048 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+.+++++|.++ .+++++|+++++.++.+. . .+| -.|++++..|.+
T Consensus 64 ~~l~~~la~~~~~~~------------~i~~~~G~~~~~~~l~~~----~------~~g---------d~v~~~~~~~~~ 112 (360)
T TIGR00858 64 EELEEELAEWKGTEA------------ALLFSSGYLANVGVISAL----V------GKG---------DLILSDALNHAS 112 (360)
T ss_pred HHHHHHHHHHhCCCC------------EEEECchHHHHHHHHHHh----C------CCC---------CEEEEEccccHH
Confidence 345566677777532 466677788887654332 1 122 246677889999
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
...++.+.+.+++.++. +|.++|++.++.... ..+.+++...-.+.+|.+.|+++|.+
T Consensus 113 ~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~--------------- 170 (360)
T TIGR00858 113 LIDGCRLSGARVRRYRH-----NDVEHLERLLEKNRG--ERRKLIVTDGVFSMDGDIAPLPQLVA--------------- 170 (360)
T ss_pred HHHHHHhcCCceEEecC-----CCHHHHHHHHHHccc--CCCeEEEEeCCccCCCCCcCHHHHHH---------------
Confidence 88887554446666653 689999998875321 12455555555677899999999999
Q ss_pred CchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 394 TNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 394 RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+.+
T Consensus 171 -----l~~~~~~-------~li~De~~~~~ 188 (360)
T TIGR00858 171 -----LAERYGA-------WLMVDDAHGTG 188 (360)
T ss_pred -----HHHHcCc-------EEEEECccccc
Confidence 9999999 99999999743
No 92
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.17 E-value=1.5e-08 Score=113.81 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++++|.+.. ..++|+|||+++..++.+.. .+| + .|++++-++...
T Consensus 70 ~lr~~ia~~l~~~~~----------~v~~~~g~t~al~~~~~~~~----------~~g--------d-~vl~~~p~y~~~ 120 (380)
T PRK06225 70 ELRELILKDLGLDDD----------EALITAGATESLYLVMRAFL----------SPG--------D-NAVTPDPGYLII 120 (380)
T ss_pred HHHHHHHHhcCCCCC----------cEEEeCCHHHHHHHHHHHhc----------CCC--------C-EEEEcCCCCcch
Confidence 466788899988653 68999999999887766421 122 2 355556666656
Q ss_pred HHHHH-HCCccEEEEecCC---CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHHHhhhhcccccccc
Q psy11047 315 EKAGL-IGLVNMRYIESDD---KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYCCLGTAMIVKGLGF 387 (943)
Q Consensus 315 ~KAa~-LG~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~eIa~~~~~~d~~~ 387 (943)
..++. .|. .++.++++. ++.+|++++++.+..+ +.+++.+...+.+|.+- ++.+|.+
T Consensus 121 ~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~i~~--------- 184 (380)
T PRK06225 121 DNFASRFGA-EVIEVPIYSEECNYKLTPELVKENMDEN------TRLIYLIDPLNPLGSSYTEEEIKEFAE--------- 184 (380)
T ss_pred HHHHHHhCc-eEEeeccccccCCccCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCCCHHHHHHHHH---------
Confidence 66664 454 778888642 4689999999988643 45666666677888864 4888888
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+.+
T Consensus 185 -----------~a~~~~~-------~ii~De~y~~~ 202 (380)
T PRK06225 185 -----------IARDNDA-------FLLHDCTYRDF 202 (380)
T ss_pred -----------HHHHCCc-------EEEEehhHHHH
Confidence 9999999 99999999754
No 93
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.17 E-value=6.5e-10 Score=121.29 Aligned_cols=127 Identities=9% Similarity=-0.050 Sum_probs=96.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.+|+++|.+. .-++|+|+|++|..++.+.. .+| -.|+++..+|.|+
T Consensus 63 ~~~~~~A~~~ga~~-----------~~~~~~Gst~a~~~~l~al~----------~~g---------d~Vlv~~~~h~s~ 112 (294)
T cd00615 63 EAQELAARAFGAKH-----------TFFLVNGTSSSNKAVILAVC----------GPG---------DKILIDRNCHKSV 112 (294)
T ss_pred HHHHHHHHHhCCCC-----------EEEEcCcHHHHHHHHHHHcC----------CCC---------CEEEEeCCchHHH
Confidence 44556789998753 23459999999988776531 122 3577889999999
Q ss_pred HHHHHHCCccEEEEecCCC------CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDK------LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~------grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
..++.+.+..++.++++.+ +.+|++++++++++.. .+.+|+.|.. |.+|.+.|+++|++
T Consensus 113 ~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~----~~k~v~l~~p-~~~G~~~dl~~I~~---------- 177 (294)
T cd00615 113 INGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP----DAKAAVITNP-TYYGICYNLRKIVE---------- 177 (294)
T ss_pred HHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC----CceEEEEECC-CCCCEecCHHHHHH----------
Confidence 9988665557777766422 4799999999997632 2567777765 67999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ +++||+||++.
T Consensus 178 ----------~~~~~g~-------~livDeA~~~~ 195 (294)
T cd00615 178 ----------EAHHRGL-------PVLVDEAHGAH 195 (294)
T ss_pred ----------HHHhcCC-------eEEEECcchhh
Confidence 9999999 99999999875
No 94
>PLN02483 serine palmitoyltransferase
Probab=99.16 E-value=1.8e-08 Score=118.27 Aligned_cols=342 Identities=10% Similarity=0.030 Sum_probs=185.9
Q ss_pred CCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCcc---ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE
Q psy11047 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFT---WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV 262 (943)
Q Consensus 186 ~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~---~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv 262 (943)
..++.|-.|+|+-......+..+.+.+...--..+.+ +...+...+ +.+.+|+++|.++ .+
T Consensus 102 ~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~e----le~~lA~~~g~~~------------ai 165 (489)
T PLN02483 102 CLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRE----LEELVARFVGKPA------------AI 165 (489)
T ss_pred EEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHH----HHHHHHHHhCCCc------------EE
Confidence 3467888899987544333333434333321111111 222334444 4556688888654 35
Q ss_pred EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHH
Q psy11047 263 LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLI 342 (943)
Q Consensus 263 fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe 342 (943)
+.++|+.+|+.++.+- + .+| -.|++++..|.|+..++.+.+.+++.++.+ |.++|+
T Consensus 166 ~~~~G~~an~~~i~al----~------~~G---------d~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le 221 (489)
T PLN02483 166 VFGMGYATNSTIIPAL----I------GKG---------GLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLE 221 (489)
T ss_pred EECCHHHHHHHHHHHh----C------CCC---------CEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHH
Confidence 5566788887544321 1 122 247789999999998887655688888864 467787
Q ss_pred HHHHHhhccCC------CcEEEEEecCC-CcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhh
Q psy11047 343 EAIERDKKKHL------IPFFIFSGLAL-PAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQK 415 (943)
Q Consensus 343 ~aI~~d~~kG~------~P~~VVaTaGT-T~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLH 415 (943)
+.|++....+. ...+++.+-|. +..|.+-++++|.+ +|++||+ |+.
T Consensus 222 ~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~--------------------la~~~~~-------~li 274 (489)
T PLN02483 222 EVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVA--------------------VCKKYKA-------YVY 274 (489)
T ss_pred HHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHH--------------------HHHHcCC-------EEE
Confidence 77764322110 01334444444 66799999999999 9999999 999
Q ss_pred HHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC--CCeeEEEEcCCCccCccCcc
Q psy11047 416 FEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL--GRAQNFTIVPSSLLRVKNSG 493 (943)
Q Consensus 416 VDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi--e~ADSItiDpHK~L~vr~~~ 493 (943)
+|.|++-. .+ | .+|+-.++. .++ ..+|-+..++||.++...+
T Consensus 275 vDEa~s~g-~~--------G---------------------~~G~g~~~~-----~~v~~~~~dI~~~SfSKs~g~~GG- 318 (489)
T PLN02483 275 LDEAHSIG-AV--------G---------------------KTGRGVCEL-----LGVDPADVDIMMGTFTKSFGSCGG- 318 (489)
T ss_pred EECcCccC-cc--------C---------------------CCCCchHHh-----cCCCcccCcEEEEecchhcccCce-
Confidence 99998743 21 0 001101111 111 3568888999999874221
Q ss_pred hhhhhcccCcc---ccccCCCCcccccCccccCCCCCcchHH-HHHHHHHH-HHHH---HHHHHHHHHhcCCCccccccc
Q psy11047 494 ALHRTFNVEPL---YLRHENSGLAIDYMHWQIPLSKRFRALK-LWFVIRNF-GIKG---LQKHIREIFSGLALPAFLVVD 565 (943)
Q Consensus 494 ~L~~af~~~p~---YL~~~~~g~~~d~~~~tie~SRrfrALk-lW~tLr~~-G~~G---l~~~I~~~l~~~~~~~~l~~~ 565 (943)
.+. ..+. ++.....+ +...++-...++. +-.+++.+ +.+| ..+.+++
T Consensus 319 ~i~----~~~~li~~l~~~~~~-------~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~-------------- 373 (489)
T PLN02483 319 YIA----GSKELIQYLKRTCPA-------HLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ-------------- 373 (489)
T ss_pred EEE----cCHHHHHHHHHhCcc-------ccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH--------------
Confidence 110 0001 11100000 0000010000000 00011111 0000 0011111
Q ss_pred cccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHH
Q psy11047 566 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKL 645 (943)
Q Consensus 566 ~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~L 645 (943)
-.+.+++|.+.|++. ++++..+....++.+.+.. ......+
T Consensus 374 -------------------------------------l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~-~~~~~~~ 414 (489)
T PLN02483 374 -------------------------------------IRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYN-PAKIPAF 414 (489)
T ss_pred -------------------------------------HHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECC-HHHHHHH
Confidence 234567788888776 7777655444555555432 1223467
Q ss_pred HHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 646 LKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 646 l~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.++|.++|.... +... .+...+|++++...|++||+++++.|+++++.+
T Consensus 415 ~~~Ll~~GI~v~-~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 415 SRECLKQNVAVV-VVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred HHHHHHCCcEEe-eeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 777777886443 3222 234689998888889999999999999876543
No 95
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.15 E-value=2.8e-08 Score=112.07 Aligned_cols=139 Identities=11% Similarity=-0.090 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...++.++.+.+++++|.+. ...+|++|||+||..|+.++|... + ++-+++...
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~----------~~v~~~~sgsea~~~al~~~~~~~--------~--------~~~ii~~~~ 130 (413)
T cd00610 77 YNEPAVELAELLLALTPEGL----------DKVFFVNSGTEAVEAALKLARAYT--------G--------RKKIISFEG 130 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCC----------CEEEEcCcHHHHHHHHHHHHHHHc--------C--------CCeEEEECC
Confidence 34566677778888888432 257999999999999999987431 1 233556666
Q ss_pred CCchHHHHHHHHCC------------ccEEEEecCC------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 309 QAHSSVEKAGLIGL------------VNMRYIESDD------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 309 ~aHySv~KAa~LG~------------~~v~~Vp~D~------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
.-|.+..-+..++. ..++.+|.+. +...|+++|++.++.. +..+.+++..-..+.+|.+
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~ 207 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVI 207 (413)
T ss_pred CcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCc
Confidence 77776655554321 1356676652 3455899999988753 1235566666666666887
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +++|.+ +|++||+ ++++|.+++++
T Consensus 208 ~~~~~~l~~l~~--------------------l~~~~~~-------~li~Dev~~g~ 237 (413)
T cd00610 208 VPPPGYLKALRE--------------------LCRKHGI-------LLIADEVQTGF 237 (413)
T ss_pred cCCHHHHHHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 66 889988 9999999 99999999865
No 96
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.14 E-value=3.7e-08 Score=123.26 Aligned_cols=356 Identities=13% Similarity=0.038 Sum_probs=210.2
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCce--eEEccCCCChHHHH-HHHHHH-HHhccCcccc--CC
Q psy11047 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYM--HAYFPALNSYPSLL-GDMLSD-AINCLGFTWA--SS 226 (943)
Q Consensus 153 p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf--~g~~~~~~s~~sil-gd~L~~-alN~n~~~~~--~S 226 (943)
|..++..-+..+| .+.+-.++++++.++-..... ...| .||++. -.|+++ -.++.. .+=..-..|. .|
T Consensus 43 P~~i~~~~~l~lp-~~~sE~e~~~~~~~la~~N~~---~~~~ig~G~y~~--~~P~vi~~~i~~~~~~~t~ytPyQ~Eis 116 (954)
T PRK05367 43 PASIRLAEPLDLP-AALSEAEALAELRAIASKNKV---FRSYIGQGYYGT--HTPPVILRNILENPAWYTAYTPYQPEIS 116 (954)
T ss_pred CHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCC---CCcccCCCCCCC--cCcHHHHHHHHhCcchhhccCCCChHHH
Confidence 4455433334565 356788999998876433221 1223 334433 234444 333321 0000111222 12
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
-..-+.-.+...++++|.|++.. ...++.++|.+-- |+..++.. . ++ .+-.|++
T Consensus 117 QG~Leal~~~Qt~la~LtG~~~a----------naSl~d~aTAa~e-a~~~a~~~--~------~~-------~~~~vlv 170 (954)
T PRK05367 117 QGRLEALLNFQTMVADLTGLEIA----------NASLLDEATAAAE-AMALAKRV--S------KS-------KSNRFFV 170 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCChh----------hccccccHHHHHH-HHHHhhhh--c------cC-------CCCEEEE
Confidence 22223333567789999999864 4678889988854 44444321 0 11 0135889
Q ss_pred cCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 307 SDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 307 S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..|.+...+. ...+.+++.++.+++ ++ .+ .. +.+...-.+.+|.+.|+++|++
T Consensus 171 ~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d--~~--------~~------~~-~~vlvq~p~~~G~i~d~~~i~~---- 229 (954)
T PRK05367 171 DDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA--LD--------HD------DV-FGVLLQYPGTSGEVRDYTALIA---- 229 (954)
T ss_pred cCccCHHHHHHHHHHHHhCCCEEEEecCccC--CC--------cc------cE-EEEEEecCCCCeeeccHHHHHH----
Confidence 999999876554 123348888887552 11 11 13 3344445788999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccc
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 462 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~ 462 (943)
+|+++|. ++.||+.+.+...+ .
T Consensus 230 ----------------~ah~~Ga-------l~~vda~~~Al~~l-----------------------------------~ 251 (954)
T PRK05367 230 ----------------AAHARGA-------LVAVAADLLALTLL-----------------------------------T 251 (954)
T ss_pred ----------------HHHHcCC-------EEEEEehhhhccCC-----------------------------------C
Confidence 9999999 99999966433111 1
Q ss_pred ccchhhhhcCCCCeeEEEEcCCCccC-------------ccCcchhhhhcccCccccccC-C-CCc-ccccCccccCCCC
Q psy11047 463 CVPASLRIQGLGRAQNFTIVPSSLLR-------------VKNSGALHRTFNVEPLYLRHE-N-SGL-AIDYMHWQIPLSK 526 (943)
Q Consensus 463 ~p~~r~~l~Gie~ADSItiDpHK~L~-------------vr~~~~L~~af~~~p~YL~~~-~-~g~-~~d~~~~tie~SR 526 (943)
.| |--.||-+..++|||+. +|+. +.+. ..+..++-. + .|. .+-+...+-+..+
T Consensus 252 ~p-------ge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~--~~r~--lpgrivG~s~d~~g~~~~~lalqtReqhi 320 (954)
T PRK05367 252 PP-------GEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDA--YKRS--MPGRIVGVSVDAAGNPALRLALQTREQHI 320 (954)
T ss_pred Ch-------hhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHH--HHhh--CCCCeeeeecccCCCcccccccccccccc
Confidence 11 11378999999999943 3321 2121 112222211 0 110 0011011222223
Q ss_pred Ccc-h------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccc
Q psy11047 527 RFR-A------------LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNF 593 (943)
Q Consensus 527 rfr-A------------LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~ 593 (943)
|+. | +..++.+.++|..|+++.-++
T Consensus 321 RrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~------------------------------------------ 358 (954)
T PRK05367 321 RREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARR------------------------------------------ 358 (954)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHH------------------------------------------
Confidence 321 2 223333566888888877666
Q ss_pred ccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeec
Q psy11047 594 ILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF 673 (943)
Q Consensus 594 ~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~ 673 (943)
...+|.++++.|.. +++++..++.++++.|++. .+ ..++.++|.++|... . ......+|++++
T Consensus 359 ---------~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~-~~--~~~i~~~l~~~gi~~-~---~~~~~~l~is~~ 421 (954)
T PRK05367 359 ---------VHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVG-GD--AAAVLARALAAGINL-R---RVDDDHVGISLD 421 (954)
T ss_pred ---------HHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCC-CC--HHHHHHHHHHCCcee-c---cccCCEEEEEec
Confidence 35678888888866 7899998888999999974 22 578999999888643 1 222457999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy11047 674 TRTTNDDITRDWNEIR 689 (943)
Q Consensus 674 ~~tt~edId~ll~~I~ 689 (943)
..+|++||+++++.+.
T Consensus 422 e~~t~~did~l~~~l~ 437 (954)
T PRK05367 422 ETTTREDLAALLAVFG 437 (954)
T ss_pred ccCCHHHHHHHHHHHc
Confidence 9999999999999997
No 97
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.14 E-value=3.2e-10 Score=109.95 Aligned_cols=128 Identities=15% Similarity=-0.036 Sum_probs=96.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.++++++++.+. ...++++|||+|+..++.+++. + +..|+++...|++.
T Consensus 4 ~~~~~l~~~~~~~~----------~~~~~~~~~t~a~~~~~~~~~~----------~---------~~~v~~~~~~~~~~ 54 (170)
T cd01494 4 ELEEKLARLLQPGN----------DKAVFVPSGTGANEAALLALLG----------P---------GDEVIVDANGHGSR 54 (170)
T ss_pred HHHHHHHHHcCCCC----------CcEEEeCCcHHHHHHHHHHhCC----------C---------CCEEEEeeccccee
Confidence 46788899997332 3689999999999888876531 1 12477788899888
Q ss_pred H-HHHHHCCccEEEEecCCCCCcCHH--HHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 E-KAGLIGLVNMRYIESDDKLSLRGD--KLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~-KAa~LG~~~v~~Vp~D~~grmD~d--aLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
. .++...+.+++.++.+.++..+.+ .+++.. ....|.+++.+..++.+|..+|+++|++
T Consensus 55 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~g~~~~~~~l~~------------- 116 (170)
T cd01494 55 YWVAAELAGAKPVPVPVDDAGYGGLDVAILEELK-----AKPNVALIVITPNTTSGGVLVPLKEIRK------------- 116 (170)
T ss_pred hhhHHHhcCCEEEEeccCCCCccchhhhhhhhcc-----ccCceEEEEEecCcCCCCeEcCHHHHHH-------------
Confidence 7 666555558888888765544332 333322 2335889999999999999999999999
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++|+|+|++++
T Consensus 117 -------~~~~~~~-------~li~D~a~~~~ 134 (170)
T cd01494 117 -------IAKEYGI-------LLLVDAASAGG 134 (170)
T ss_pred -------HHHHcCC-------EEEEecccccc
Confidence 9999999 99999999887
No 98
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.14 E-value=2.9e-08 Score=112.45 Aligned_cols=130 Identities=14% Similarity=0.008 Sum_probs=97.2
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..+|...++|..+ ++++|.+ ..++|+|||+|+..++.+.. + .+| -.
T Consensus 30 ~~g~~~~~le~~l----a~~~g~~------------~~v~~~sgt~al~lal~al~---~------~~G---------d~ 75 (379)
T PRK11658 30 TTGPKNQALEQAF----CQLTGNQ------------HAIAVSSATAGMHITLMALG---I------GPG---------DE 75 (379)
T ss_pred cCCHhHHHHHHHH----HHHhCCC------------eEEEECCHHHHHHHHHHHcC---C------CCC---------CE
Confidence 3477788888754 6777764 36889999999988876421 0 122 24
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
|+++..+|.+...++..-+..++.++++.+ +.+|+++++++|... +.+|+.+. .+|..-|+++|.+
T Consensus 76 Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~------tkav~~~~---~~G~~~d~~~i~~---- 142 (379)
T PRK11658 76 VITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPR------TKAIIPVH---YAGAPADLDAIRA---- 142 (379)
T ss_pred EEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccC------CeEEEEeC---CCCCcCCHHHHHH----
Confidence 778899999988777544458888988754 579999999998753 44555433 4788889999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+|++..
T Consensus 143 ----------------~a~~~gi-------~vi~D~a~a~g 160 (379)
T PRK11658 143 ----------------IGERYGI-------PVIEDAAHAVG 160 (379)
T ss_pred ----------------HHHHcCC-------eEEEECCCccC
Confidence 9999999 99999999744
No 99
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.13 E-value=3e-09 Score=119.83 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=93.7
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. +++++|.+ ..+++++|++||..++.+.. .+| -.|
T Consensus 38 ~~p~~~~le~~----la~l~g~~------------~a~~~~sG~~Ai~~~l~~l~----------~~g---------d~V 82 (369)
T cd00614 38 GNPTVDALEKK----LAALEGGE------------AALAFSSGMAAISTVLLALL----------KAG---------DHV 82 (369)
T ss_pred CChhHHHHHHH----HHHHHCCC------------CEEEEcCHHHHHHHHHHHHc----------CCC---------CEE
Confidence 56888888875 46777764 36889999999988877531 122 246
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... ..-+.++..++.+ |++++++++++. +.+|+....++.+|.+.|+++|++
T Consensus 83 l~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~-- 149 (369)
T cd00614 83 VASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAE-- 149 (369)
T ss_pred EECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHH--
Confidence 77788888765543 1223467777664 488888888642 567777778888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ +++||++|+..
T Consensus 150 ------------------la~~~g~-------~livD~t~~~~ 167 (369)
T cd00614 150 ------------------LAHEHGA-------LLVVDNTFATP 167 (369)
T ss_pred ------------------HHHHcCC-------EEEEECCCcch
Confidence 9999999 99999999765
No 100
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.12 E-value=1.5e-08 Score=117.18 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=96.0
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|+. +|++.|.. ..++|++||+|+..++.+. ++ +| -.
T Consensus 61 ~~~p~~~~le~~----lA~l~g~~------------~av~~sSGt~Al~~al~~l----l~------~G---------d~ 105 (433)
T PRK08134 61 ISNPTVAVLEER----VAALEGGV------------GAIATASGQAALHLAIATL----MG------AG---------SH 105 (433)
T ss_pred CcChHHHHHHHH----HHHHhCCC------------cEEEeCCHHHHHHHHHHHH----hC------CC---------CE
Confidence 356788888864 47888764 3599999999998887642 11 22 24
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..... . + -+.+++.++++ |+++++++|+.+ +.+|+....++.+|.+-|+++|++
T Consensus 106 Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~~------TklV~~e~~~np~g~v~Di~~I~~- 173 (433)
T PRK08134 106 IVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRPN------TRLLFGETLGNPGLEVLDIPTVAA- 173 (433)
T ss_pred EEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCcccCcccCHHHHHH-
Confidence 778888888765554 2 2 22467777764 799999999764 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ +++||++++..
T Consensus 174 -------------------la~~~gi-------~livD~t~a~~ 191 (433)
T PRK08134 174 -------------------IAHEAGV-------PLLVDSTFTTP 191 (433)
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999765
No 101
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.12 E-value=2.6e-08 Score=112.22 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=96.5
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..+|...++|.. +++++|.+ ..++++|||+|+..++.+.. + .+| -.
T Consensus 26 ~~g~~~~~le~~----la~~~g~~------------~~v~~~sgt~al~~~l~al~---~------~~G---------d~ 71 (380)
T TIGR03588 26 TQGPTVPAFEEA----LAEYVGAK------------YAVAFNSATSALHIACLALG---V------GPG---------DR 71 (380)
T ss_pred cCChhHHHHHHH----HHHHHCCC------------eEEEEcCHHHHHHHHHHHcC---C------CCC---------CE
Confidence 346666777665 56777764 25777899999877765421 0 122 24
Q ss_pred EEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 304 AYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 304 V~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
|+++..+|.+...++...+..++.++++ +++.+|++++++.|+.... ..+.+|+.+. .+|...|+++|.+
T Consensus 72 Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~t~~v~~~~---~~G~~~~~~~i~~---- 142 (380)
T TIGR03588 72 VWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKG--KLPKAIVPVD---FAGKSVDMQAIAA---- 142 (380)
T ss_pred EEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccC--CCceEEEEeC---CCCccCCHHHHHH----
Confidence 7788889999888875444588888886 4788999999999974311 1245555443 4688889999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|+|++.+
T Consensus 143 ----------------l~~~~~~-------~lI~D~a~a~g 160 (380)
T TIGR03588 143 ----------------LAKKHGL-------KIIEDASHALG 160 (380)
T ss_pred ----------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999765
No 102
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.09 E-value=1.3e-08 Score=117.64 Aligned_cols=338 Identities=11% Similarity=0.001 Sum_probs=191.2
Q ss_pred eeEEccCCCChHHHHHH-HHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHH
Q psy11047 194 MHAYFPALNSYPSLLGD-MLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272 (943)
Q Consensus 194 f~g~~~~~~s~~silgd-~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL 272 (943)
|....+-..+ +++-.. |..+... -..|..||...++|..+ ++++|++ ..++|++||.|..
T Consensus 40 ~iDLltDsgT-~aMs~~q~a~~~~G--De~yag~~s~~~lE~~v----a~~~G~~------------~av~v~sGT~Al~ 100 (450)
T TIGR02618 40 YIDLLTDSGT-NAMSDKQWAGLMMG--DEAYAGSRNFYHLERTV----RELYGFK------------YVVPTHQGRGAEN 100 (450)
T ss_pred EEEcccCCCc-HHHHHHHHHHhhhc--chhhcCCCcHHHHHHHH----HHHHCCC------------eEEEcCCHHHHHH
Confidence 4555544444 333333 3333322 24699999999999865 6788886 4799999999944
Q ss_pred HHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCCccEEEEecC----------CCCCcCHHHH
Q psy11047 273 ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESD----------DKLSLRGDKL 341 (943)
Q Consensus 273 ~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D----------~~grmD~daL 341 (943)
++ ..+ .+ .|| + .| +...|++...+. .+++...+-++.+ .+|.||+++|
T Consensus 101 ll-~~l---~l------~pG--------D-eV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~L 159 (450)
T TIGR02618 101 LL-SQI---AI------KPG--------D-YV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKL 159 (450)
T ss_pred HH-HHh---CC------CCc--------C-EE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHH
Confidence 32 111 01 122 2 23 567888887774 3433344444332 4699999999
Q ss_pred HHHHHHhhccCCCcEEEEEecCCCcc-ccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 342 IEAIERDKKKHLIPFFIFSGLALPAF-LVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 342 e~aI~~d~~kG~~P~~VVaTaGTT~t-GaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
+++|++.... . ..+|+++.-++.. |.. .++.++.+ +|++||+ .+|.|
T Consensus 160 e~aI~~~~~~-~-~~lV~~e~t~N~~GG~pvs~~~l~~I~e--------------------lA~~~Gl-------~vi~D 210 (450)
T TIGR02618 160 QKLIDEVGAD-K-IPYICLAVTVNLAGGQPVSMANMREVRE--------------------LCEAHGI-------KVFYD 210 (450)
T ss_pred HHHhccccCc-c-cCceEEEEecccCCCeeCCHHHHHHHHH--------------------HHHHcCC-------EEEEE
Confidence 9999854221 1 2355555544444 555 56888888 9999999 99999
Q ss_pred hhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc--c-hhhhhcCCCCeeEEEEcCCCccCccCcch
Q psy11047 418 ALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV--P-ASLRIQGLGRAQNFTIVPSSLLRVKNSGA 494 (943)
Q Consensus 418 AA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p--~-~r~~l~Gie~ADSItiDpHK~L~vr~~~~ 494 (943)
||.....++-|- -.+.|-.-.+ + .+.. ..+||++++++||-.+++-++.
T Consensus 211 aAR~~gNA~~I~-------------------------~re~g~~~~~i~ei~~e~---~~~aD~~~~S~~Kd~~~~~GG~ 262 (450)
T TIGR02618 211 ATRCVENAYFIK-------------------------EREQGYEDKSIAEILKEM---MSYADGCTMSGKKDCLVNIGGF 262 (450)
T ss_pred ccchhhChhhhh-------------------------cccccccCCCHHHHHHHH---hccCcEEEEeeccCCCCCCceE
Confidence 997553222000 0000000000 0 0111 3579999999999988543333
Q ss_pred h--------hhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Q psy11047 495 L--------HRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDS 566 (943)
Q Consensus 495 L--------~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~ 566 (943)
+ ..+-.....| + | +..++.-.+|...|+ ..|+.+.+++.. +
T Consensus 263 l~~~d~~l~~k~r~~~~~~---e--G----~~tyGgla~r~~~al----------a~gL~e~~~~~y--------~---- 311 (450)
T TIGR02618 263 LCMNDDEMFQSAKELVVVF---E--G----MPSYGGLAGRDMEAM----------AIGIREAVDYEY--------I---- 311 (450)
T ss_pred EEeCCHHHHHHHHHHhhhc---C--C----ccccCchhhhhHHHH----------HHHHHHhhhHHH--------H----
Confidence 2 1110100011 0 0 011111111222222 235666666521 1
Q ss_pred ccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCC------Ch
Q psy11047 567 YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE------NI 640 (943)
Q Consensus 567 ~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~------n~ 640 (943)
.+.+..+++|++.|.+. ++.++.|+..++|.+..... .+
T Consensus 312 ----------------------------------~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~ 356 (450)
T TIGR02618 312 ----------------------------------EHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQ 356 (450)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhh
Confidence 01345599999999888 89998899999999976541 12
Q ss_pred H-HHHHHHHHh-ccC-------cEEEeeccc------CCCcEEEE-eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 L-TEKLLKRLN-SKG-------RLHCVPASL------RIQGLGRA-QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l-~~~Ll~~L~-~~G-------~~~~s~t~~------~g~~~lR~-v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
. ...|...|- ..| .++.....- ...-.+|+ +.-.--|.+|++...+.|..+.++
T Consensus 357 ~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 357 FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 2 245555443 223 222221100 11258999 666667999999999998887654
No 103
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.08 E-value=5.5e-08 Score=121.68 Aligned_cols=442 Identities=13% Similarity=0.046 Sum_probs=251.7
Q ss_pred CCCCC--CCCCCHHHHHHHHHHHHcCCCCCCCCCceeE--EccCCCChHHHH-HHHHHHH-HhccCcccc--CChhHHHH
Q psy11047 161 PESAP--VEPEKWDTIMGDIEKVIMPGITHWQSPYMHA--YFPALNSYPSLL-GDMLSDA-INCLGFTWA--SSPACTEL 232 (943)
Q Consensus 161 ~~~lP--e~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g--~~~~~~s~~sil-gd~L~~a-lN~n~~~~~--~SPaateL 232 (943)
+-.+| ..+.+-.++++.+.++-..... +..|.| +++. -+|+.+ -.++... +-..-..|. .|...-+.
T Consensus 75 ~l~lp~~~~~~sE~e~~~~~~~la~kN~~---~~~fiG~G~y~~--~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqa 149 (993)
T PLN02414 75 SMKLSKYDEGLTESQMLEHMKSLASKNKV---FKSYIGMGYYNT--HVPPVILRNILENPGWYTQYTPYQAEIAQGRLES 149 (993)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCc---cccccCCCCCCc--cCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHH
Confidence 33566 2467888999999876443222 223322 2111 133434 4333321 111112333 23444444
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
-.+...++|+|+|++.. ...|+.++|.+--.++++.+. .+| .+-.|++|+..|.
T Consensus 150 l~~~Qt~ia~LtG~~~a----------naSL~d~aTAaaea~~~a~~~---------~~g-------~~~~VlVs~~~hP 203 (993)
T PLN02414 150 LLNYQTMITDLTGLPMS----------NASLLDEGTAAAEAMAMCNNI---------LKG-------KKKKFLIASNCHP 203 (993)
T ss_pred HHHHHHHHHHHhCCChh----------hEeecCChHHHHHHHHHHHhc---------ccC-------CCCEEEEcCccCH
Confidence 44677899999999864 578999999886544443221 111 1235889999999
Q ss_pred HHHHHHH-H---CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccc
Q psy11047 313 SVEKAGL-I---GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388 (943)
Q Consensus 313 Sv~KAa~-L---G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~ 388 (943)
+...++. . -+..++.++.+... ...+ -.+.+.+.-.+.+|.+.|+++|++
T Consensus 204 ~~~~v~~t~a~~~GieV~~v~~~~~~---------~~~~-------~v~~vlvq~P~~~G~v~dv~~I~~---------- 257 (993)
T PLN02414 204 QTIDVCQTRADGLGLEVVVADEKDFD---------YSSG-------DVCGVLVQYPATDGEVLDYAEFVK---------- 257 (993)
T ss_pred hHHHHHHHhhhhcCCEEEEecchhhc---------cccC-------ceEEEEEecCCCCeEEcCHHHHHH----------
Confidence 9776652 2 23478888764311 0111 122334566678999999999999
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhh
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASL 468 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~ 468 (943)
+|+++|. .+.| ||...+ .. .+.+-
T Consensus 258 ----------~ah~~Ga-------L~iV-aad~la-l~-----------------------------------~l~~p-- 281 (993)
T PLN02414 258 ----------NAHANGV-------KVVM-ATDLLA-LT-----------------------------------MLKPP-- 281 (993)
T ss_pred ----------HHHHcCC-------EEEE-EECHHH-hc-----------------------------------CCCCH--
Confidence 9999999 7888 665433 11 11111
Q ss_pred hhcCCCCeeEEEEcCCCccC-------------ccCcchhhhhcccCc-cccccCC--CCcccccC-cc-ccCCCCCcc-
Q psy11047 469 RIQGLGRAQNFTIVPSSLLR-------------VKNSGALHRTFNVEP-LYLRHEN--SGLAIDYM-HW-QIPLSKRFR- 529 (943)
Q Consensus 469 ~l~Gie~ADSItiDpHK~L~-------------vr~~~~L~~af~~~p-~YL~~~~--~g~~~d~~-~~-tie~SRrfr- 529 (943)
|--.||-++.++|||+. +++. +.+ ..| ..++... .|. ..+. .. +-+.-+|+.
T Consensus 282 ---ge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~--~~r---~~PgriVG~s~d~~g~-~~~~l~LqtReqhiRrEk 352 (993)
T PLN02414 282 ---GEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQE--YKR---LMPGRIIGVSVDSSGK-PALRMAMQTREQHIRRDK 352 (993)
T ss_pred ---hhccCcEEEECCCccccCCCCCCCCeeEEEECHH--HHh---hCCCcccCcccCCCCC-cccccccccccchhhhcc
Confidence 11278999999999993 3322 111 122 2222110 010 0000 00 112222221
Q ss_pred -------hHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCccccccc
Q psy11047 530 -------ALKLWFVI-----RNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSY 597 (943)
Q Consensus 530 -------ALklW~tL-----r~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~ 597 (943)
+..++..+ .++|..|+++.-++
T Consensus 353 aTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~r---------------------------------------------- 386 (993)
T PLN02414 353 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR---------------------------------------------- 386 (993)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccccHHHHHHH----------------------------------------------
Confidence 12333333 34455666655444
Q ss_pred CCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCC
Q psy11047 598 FPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTT 677 (943)
Q Consensus 598 ~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt 677 (943)
..+++.++++.|.+ +++++..++.+++|+|++. + ++++.++|.++|. .+.. .....+|++++..+|
T Consensus 387 -----i~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~--~--~~~v~~~L~~~gI-~l~~---~~~~~lrvs~~e~~T 452 (993)
T PLN02414 387 -----VHGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCS--D--ADAIADAAAKVGI-NLRV---VDANTVTVSFDETTT 452 (993)
T ss_pred -----HHHHHHHHHHHHhh-cCCccCCCCCcCeEEEecC--C--HHHHHHHHHHCCC-eeEE---ecCCeEEEEeeccCC
Confidence 35688888888866 5799998888999999984 2 4788899988886 3332 113469999999999
Q ss_pred HHHHHHHHHHHHHHH--H---H-HHHHHhhhhhcc-cccccccc----cccc----------------------------
Q psy11047 678 NDDITRDWNEIRNTA--T---E-ILAELAEETQRV-QVTKRTRV----PLKE---------------------------- 718 (943)
Q Consensus 678 ~edId~ll~~I~~~~--~---~-ll~~~~~~~~~~-~~~~~~~~----~~~~---------------------------- 718 (943)
++||+++++.+.... . + +..+.. ..+ ..-.|+.. |.+.
T Consensus 453 ~edId~L~~~l~~~~~~~~~~~~~~~~~~---~~~p~~~~r~~~~l~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~~p 529 (993)
T PLN02414 453 LEDVDKLFKVFAGGKPVPFTAESLAPEVD---SSIPSSLARESPYLTHPIFNQYHSEHELLRYLHRLQNKDLSLVHSMIP 529 (993)
T ss_pred HHHHHHHHHHHcccccccchhhhhhhhhc---ccCchhhhccCccccCcccccccCHHHHHHHHHHHhhcccccccCCcc
Confidence 999999999997541 1 1 111100 000 00012211 2211
Q ss_pred ----cccccccccccccc----cC-CCCcc-chhccchhhhccchhHHhhhcccccceeeeccCCC----hHHHHHHHhh
Q psy11047 719 ----TKGRNALFGSSLLL----AN-SPMSP-KIMNGSFAAVFDADESIMNGWTHGIAQIQCDSNDS----PSMRRRIRGI 784 (943)
Q Consensus 719 ----~~~~~~~~g~~~~~----~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 784 (943)
|---||..-+.... ++ -|+.| .++.|....+|+..+.|++ +. .+..+.+.+.-. -++--=||++
T Consensus 530 lgsctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~-i~-g~~~v~f~pnaga~ge~a~~~vi~~~ 607 (993)
T PLN02414 530 LGSCTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCE-IT-GFDSFSLQPNAGAAGEYAGLMVIRAY 607 (993)
T ss_pred CcccccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHH-Hh-CCCeEEEcCCCcHHHHHHHHHHHHHH
Confidence 22234443332221 11 35555 4588999999999999998 54 346777776655 6888889999
Q ss_pred hhc-Cc
Q psy11047 785 LMS-GK 789 (943)
Q Consensus 785 ~~~-~~ 789 (943)
+.+ |.
T Consensus 608 ~~~~Gd 613 (993)
T PLN02414 608 HLSRGD 613 (993)
T ss_pred HhccCC
Confidence 877 54
No 104
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.06 E-value=6.1e-08 Score=107.72 Aligned_cols=128 Identities=15% Similarity=0.013 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEE-cCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVL-QTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gvf-TsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
.++.+.+|+++|.+.+ ..++ |+|+++++..++.+. . .+| -.|++++-++.
T Consensus 72 ~~lr~~ia~~~~~~~~----------~i~~~~~Ga~~~i~~~~~~~----~------~~g---------d~vlv~~p~y~ 122 (361)
T PRK00950 72 PELREALSKYTGVPVE----------NIIVGGDGMDEVIDTLMRTF----I------DPG---------DEVIIPTPTFS 122 (361)
T ss_pred HHHHHHHHHHhCCCHH----------HEEEeCCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCChH
Confidence 3455667788888653 4667 677777765444321 1 122 23555554444
Q ss_pred HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccc
Q psy11047 313 SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 313 Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L 392 (943)
....++...+.+++.++.++++.+|+++|++.+... +.+|+.+...+.+|.+-|++++.+
T Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~-------------- 182 (361)
T PRK00950 123 YYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRK-------------- 182 (361)
T ss_pred HHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHH--------------
Confidence 444455444458888988888899999999988542 456666778899999999999999
Q ss_pred cCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 393 QTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 393 ~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+.+
T Consensus 183 ------l~~~~~~-------~li~De~y~~~ 200 (361)
T PRK00950 183 ------ILESTDA-------LVFVDEAYVEF 200 (361)
T ss_pred ------HHHHCCc-------EEEEECchhhh
Confidence 9999999 99999999755
No 105
>PRK15029 arginine decarboxylase; Provisional
Probab=99.05 E-value=6e-08 Score=118.47 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
.-+..|++||.+.. -.+|.|+|.+|+.++.++- .+| -.|++...+|-|+.
T Consensus 210 Aq~~aA~~fgA~~t-----------~FlvNGST~gn~a~i~a~~----------~~g---------d~Vlv~RN~HKSv~ 259 (755)
T PRK15029 210 SEKYAARVFGADRS-----------WSVVVGTSGSNRTIMQACM----------TDN---------DVVVVDRNCHKSIE 259 (755)
T ss_pred HHHHHHHHhCCCcE-----------EEEeCChhHHHHHHHHHhc----------CCC---------CEEEeecccHHHHH
Confidence 34567999999765 4689999999986655432 122 25889999999999
Q ss_pred HHHHHCCccEEEEecC--C---CCCcC-----HHHHHHHHHHhhc----cCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 316 KAGLIGLVNMRYIESD--D---KLSLR-----GDKLIEAIERDKK----KHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D--~---~grmD-----~daLe~aI~~d~~----kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|+.|.+...+++++. . .+.++ ++.++++|++.+. .+..|..|+.|.. |..|.+-++++|++
T Consensus 260 ~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~--- 335 (755)
T PRK15029 260 QGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQD--- 335 (755)
T ss_pred HHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHH---
Confidence 9998766666666542 2 23445 9999999987542 2345777777765 55688889999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+|+++|+ .+|||-|||+...|
T Consensus 336 -----------------~~h~~~~-------~llvDEAhGah~~F 356 (755)
T PRK15029 336 -----------------LLEKTSD-------RLHFDEAWYGYARF 356 (755)
T ss_pred -----------------HHHhcCC-------eEEEECcccccccc
Confidence 9999999 99999999998444
No 106
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.05 E-value=1.4e-07 Score=106.74 Aligned_cols=157 Identities=11% Similarity=-0.046 Sum_probs=106.6
Q ss_pred HHHHHHHHHh-ccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 208 LGDMLSDAIN-CLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 208 lgd~L~~alN-~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
+.+.+...++ .....|........+-..+.+++++.+|.+-. +....++|+|++++...++.+. +
T Consensus 45 ~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~-------~~~~i~~t~G~~~~l~~~~~~~----~--- 110 (389)
T PRK05957 45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELN-------NEQAIVVTAGSNMAFMNAILAI----T--- 110 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCeEEEeCChHHHHHHHHHHh----c---
Confidence 3444444443 22223444444456667788899999887421 0125789999999986665432 1
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA 366 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~ 366 (943)
.+| -.|++++-.+.....++..-+.+++.++.++++.+|+++|++.|+.+ +.+|+.+...+.
T Consensus 111 ---~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~klv~~~~p~NP 172 (389)
T PRK05957 111 ---DPG---------DEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPK------TRAIVTISPNNP 172 (389)
T ss_pred ---CCC---------CEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcC------ceEEEEeCCCCC
Confidence 122 23566665554444444333447888999888899999999988643 557777778899
Q ss_pred cccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+-| +++|.+ +|++||+ ++.+|.+|+.+
T Consensus 173 tG~~~~~~~~~~i~~--------------------~a~~~~~-------~li~De~y~~~ 205 (389)
T PRK05957 173 TGVVYPEALLRAVNQ--------------------ICAEHGI-------YHISDEAYEYF 205 (389)
T ss_pred CCcCcCHHHHHHHHH--------------------HHHHcCc-------EEEEeccchhc
Confidence 999877 777888 9999999 99999999865
No 107
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.04 E-value=2.6e-08 Score=115.38 Aligned_cols=127 Identities=9% Similarity=0.000 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|+. +++++|.+ ..+++++|+.|+..++.+. + .+| -.|
T Consensus 67 ~~pt~~~le~~----la~l~g~~------------~~v~fsSG~~Ai~~al~~l----l------~~G---------d~V 111 (437)
T PRK05613 67 TNPTVEALENR----IASLEGGV------------HAVAFASGQAAETAAILNL----A------GAG---------DHI 111 (437)
T ss_pred cChHHHHHHHH----HHHHhCCC------------eEEEeCCHHHHHHHHHHHh----c------CCC---------CEE
Confidence 45777777764 57888874 3577777888887665432 1 122 257
Q ss_pred EecCCCchHHHHHH--HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG--LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa--~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... .+ -+.++..++ +. .|+++++++|+++ +.+|+...-++.+|.+-|+++|++
T Consensus 112 I~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~---~d~e~l~~~l~~~------tk~V~~e~~~Np~~~v~di~~I~~-- 179 (437)
T PRK05613 112 VTSPRLYGGTETLFLVTLNRLGIEVTFVE-NP---DDPESWQAAVQPN------TKAFFGETFANPQADVLDIPAVAE-- 179 (437)
T ss_pred EECCCccHHHHHHHHHHHHhcCeEEEEEC-CC---CCHHHHHHhCCcc------CeEEEEECCCCCCCcccCHHHHHH--
Confidence 88899999875433 12 234677776 22 2789999988764 445666666777889999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .++||++++..
T Consensus 180 ------------------la~~~gi-------~livD~t~a~g 197 (437)
T PRK05613 180 ------------------VAHRNQV-------PLIVDNTIATA 197 (437)
T ss_pred ------------------HHHHcCC-------eEEEECCCccc
Confidence 9999999 99999999655
No 108
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.03 E-value=6.8e-08 Score=109.40 Aligned_cols=319 Identities=15% Similarity=0.121 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+|-.++-+||+++-|++.-.+ =-..|+.+-+.+|++-|.+... + | -..+-++++++
T Consensus 107 ~l~li~~Lq~~L~~ITG~DavsL-----------QP~AGAqGE~aGll~Ir~YHe~-----r-G-----~~~R~~~LIP~ 164 (496)
T COG1003 107 YLELIYELQEWLKEITGMDAVSL-----------QPNAGAQGEYAGLLAIRAYHES-----R-G-----EGHRNICLIPD 164 (496)
T ss_pred HHHHHHHHHHHHHHhcCCceeec-----------cCCCCcchhhHHHHHHHHHHHH-----c-C-----CCcCcEEEeec
Confidence 45666778899999999985422 1234667778889888765422 1 1 12456788999
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhcccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~ 387 (943)
.+|=...-.|.+++-+|+.|+|+++|.+|+++|++.+.++ ..++..|..+|- |.+ .+|.+|++
T Consensus 165 SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~------~AalMiTnPsT~-GvFE~~I~ei~~--------- 228 (496)
T COG1003 165 SAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDN------LAALMITNPSTL-GVFEEDIREICE--------- 228 (496)
T ss_pred cccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccc------eeEEEeccCccc-ccchhhHHHHHH---------
Confidence 9999887777776669999999999999999999999865 567777777665 666 45999999
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+.+++|- -+..|||=--+ .+ | .+.
T Consensus 229 -----------ivH~~Gg-------~vY~DGANlNA-~v--------G--------------------------~~r--- 252 (496)
T COG1003 229 -----------IVHEAGG-------QVYYDGANLNA-IV--------G--------------------------LAR--- 252 (496)
T ss_pred -----------HHHHcCC-------EEEecCcchhh-hh--------c--------------------------ccc---
Confidence 9999998 89999993222 11 1 111
Q ss_pred hhhcCCCCeeEEEEcCCCccCccCcchh-----hhhcccCccccccC---CCCcc--cccC-ccccCCCCCc-c---h-H
Q psy11047 468 LRIQGLGRAQNFTIVPSSLLRVKNSGAL-----HRTFNVEPLYLRHE---NSGLA--IDYM-HWQIPLSKRF-R---A-L 531 (943)
Q Consensus 468 ~~l~Gie~ADSItiDpHK~L~vr~~~~L-----~~af~~~p~YL~~~---~~g~~--~d~~-~~tie~SRrf-r---A-L 531 (943)
+|--.+|-+-++.||.+.++.+.-= ...-..-++||..+ ..+.. .++. .+++.-++.+ . . +
T Consensus 253 ---PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~ 329 (496)
T COG1003 253 ---PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILP 329 (496)
T ss_pred ---ccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHH
Confidence 1334789999999999884332110 00001112344331 01110 0110 1222223322 1 1 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 532 klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
..|+.++.+|.+|+++.-+.. +-.|.|++
T Consensus 330 ~a~~YI~~mG~~GL~~ase~A---------------------------------------------------vLNANYia 358 (496)
T COG1003 330 IAWAYIRMMGADGLKQASEVA---------------------------------------------------VLNANYIA 358 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHH---------------------------------------------------HHhHHHHH
Confidence 789999999999999877763 33466666
Q ss_pred HHHhCCCCeEEecCCC---ccEEEEEecC---C-ChHHHHHHHHHhccCcEEEeecc-cC--CCcEEEEeecCCCCHHHH
Q psy11047 612 ALVLGDPRFEIPAARH---LGMVVIRLLG---E-NILTEKLLKRLNSKGRLHCVPAS-LR--IQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 612 ~~L~~~p~~eIl~~~~---l~iV~Fr~~g---~-n~l~~~Ll~~L~~~G~~~~s~t~-~~--g~~~lR~v~~~~tt~edI 681 (943)
..|+. .++++-.+. ..=+.+.... . ..-...+.+||..-|. | .||. +. -.+.+=+=.--.-+++++
T Consensus 359 ~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~Gf-H-aPT~~FPliV~~tLMIEPTEsEsk~eL 434 (496)
T COG1003 359 RRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGF-H-APTMYFPLIVAGTLMIEPTESESKEEL 434 (496)
T ss_pred HHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCC-C-CCcccCccccccceeecCCCCCCHHHH
Confidence 66655 566654322 1112222221 1 1235788899998884 2 3331 22 223333311222357999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATEILAEL 699 (943)
Q Consensus 682 d~ll~~I~~~~~~ll~~~ 699 (943)
|++++++.++++++.+..
T Consensus 435 Drf~dami~I~~Ea~~~~ 452 (496)
T COG1003 435 DRFIDAMIAIREEADAVP 452 (496)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998877664
No 109
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.01 E-value=7e-08 Score=112.56 Aligned_cols=135 Identities=16% Similarity=0.030 Sum_probs=95.6
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
...|..++...++|..+ ++++|.. ..++|+|||+|+..++.+- + .||
T Consensus 71 ~~~Y~~~~g~~~Lreai----a~~~~~~------------~vv~t~ggt~A~~~~~~al----l------~pG------- 117 (460)
T PRK13238 71 DEAYAGSRSYYRLEDAV----KDIFGYP------------YTIPTHQGRAAEQILFPVL----I------KKG------- 117 (460)
T ss_pred CcccCCCCCHHHHHHHH----HHHhCCC------------cEEECCCHHHHHHHHHHHh----C------CCC-------
Confidence 34577788888888765 5555653 4799999999998876542 1 122
Q ss_pred CceEEEecCCCchHHHHHH-HHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc
Q psy11047 300 SRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL 368 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG 368 (943)
+ |+++ ..||....+. .+.+..++.+++++ .|.+|+++|++.|.+... ..+.+|+.+.-++.+|
T Consensus 118 -D--Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptG 191 (460)
T PRK13238 118 -D--VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAG 191 (460)
T ss_pred -C--EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCC
Confidence 3 3444 4588877776 45455778888753 345999999999985321 1367788887777776
Q ss_pred -cc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 369 -VV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 369 -aI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
.+ +++++|++ +|++||+ |++.|+|+
T Consensus 192 G~v~s~~~l~~I~~--------------------ia~~~gi-------~li~Daa~ 220 (460)
T PRK13238 192 GQPVSMANLRAVYE--------------------IAKKYGI-------PVVIDAAR 220 (460)
T ss_pred CcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEECcc
Confidence 44 44778888 9999999 99999976
No 110
>PRK05968 hypothetical protein; Provisional
Probab=99.00 E-value=3.7e-08 Score=112.28 Aligned_cols=125 Identities=9% Similarity=0.054 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+ .+|+++|.+. .+++++||.|+..++.+. + .+| -.|
T Consensus 61 ~~p~~~~le~----~lA~l~g~~~------------av~~~sG~~Ai~~al~al----~------~~G---------d~V 105 (389)
T PRK05968 61 DNPTVRAFEE----MLAKLEGAED------------ARGFASGMAAISSTVLSF----V------EPG---------DRI 105 (389)
T ss_pred CChhHHHHHH----HHHHHhCCCc------------EEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 4567777776 4588888753 467788898887776531 1 123 235
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... .+...+.++..++.+ |++++++++. . +.+|+...-|+..+.+.|+++|++
T Consensus 106 l~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-~------tklV~ie~pt~~~~~~~dl~~i~~-- 171 (389)
T PRK05968 106 VAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKALP-G------AKLLYLESPTSWVFELQDVAALAA-- 171 (389)
T ss_pred EEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhcc-c------CCEEEEECCCCCCCcHHHHHHHHH--
Confidence 666777766432 332223466666643 7888888872 1 345666667777788899999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ .+++|++|+..
T Consensus 172 ------------------la~~~gi-------~vivD~a~a~~ 189 (389)
T PRK05968 172 ------------------LAKRHGV-------VTMIDNSWASP 189 (389)
T ss_pred ------------------HHHHcCC-------EEEEECCCcch
Confidence 9999999 99999999654
No 111
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.99 E-value=1.1e-07 Score=110.22 Aligned_cols=135 Identities=13% Similarity=0.010 Sum_probs=94.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..|..++...++|..+ ++++|.+ ..++|+|||+|+..++.+. + .||
T Consensus 47 ~~Y~~~~g~~~Leeai----a~~~g~~------------~vv~t~~Gt~Al~la~~al----~------~pG-------- 92 (431)
T cd00617 47 EAYAGSKSFYDLEDAV----QDLFGFK------------HIIPTHQGRGAENILFSIL----L------KPG-------- 92 (431)
T ss_pred CccCCCCCHHHHHHHH----HHHHCCC------------eEEEcCCHHHHHHHHHHHh----C------CCC--------
Confidence 4588888888998876 5566664 3799999999999887642 1 133
Q ss_pred ceEEEecCCCchHHHHHH-HHCCccEEEEecCC----------CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc-c
Q psy11047 301 RLVAYCSDQAHSSVEKAG-LIGLVNMRYIESDD----------KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF-L 368 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D~----------~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t-G 368 (943)
+ .| . ...||....++ .+.+...+.++++. .|.||+++|++.|++... ..+.+|+.+..++.+ |
T Consensus 93 D-~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG 167 (431)
T cd00617 93 R-TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGG 167 (431)
T ss_pred C-EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCC
Confidence 2 23 3 45888777766 45455777777752 355999999999985411 124566666555555 6
Q ss_pred ccc---cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 369 VVD---SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 369 aID---pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
.+- .+++|.+ +|++||+ |+|.|+|..
T Consensus 168 ~~~s~~~l~~i~e--------------------ia~~~gi-------~li~DaAr~ 196 (431)
T cd00617 168 QPVSMANLREVRE--------------------LAHKYGI-------PVVLDAARF 196 (431)
T ss_pred ccCCHHHHHHHHH--------------------HHHHcCC-------EEEEEchhh
Confidence 653 4667788 9999999 999999943
No 112
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.99 E-value=2.1e-08 Score=113.96 Aligned_cols=126 Identities=7% Similarity=0.008 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. +|+++|.+ ..+++++|+.|+..++.+- + .+| -.|
T Consensus 59 ~~pt~~~Le~~----lA~l~G~~------------~al~~~sG~~Ai~~~l~al----~------~~G---------d~V 103 (386)
T PRK06767 59 GNPTVKLFEER----MAVLEGGE------------EALAFGSGMAAISATLIGF----L------KAG---------DHI 103 (386)
T ss_pred CCcchHHHHHH----HHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 56777888764 57888864 3588888998876655431 1 122 246
Q ss_pred EecCCCchHHHHHH-HHC---CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-LIG---LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~LG---~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... .++ ...+..++. .|++++++++... +.+|+....++.+|.+-|+++|.+
T Consensus 104 v~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~-- 170 (386)
T PRK06767 104 ICSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIR-- 170 (386)
T ss_pred EEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHH--
Confidence 67777776655544 222 123344433 3788898888643 567777778888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+||+..
T Consensus 171 ------------------la~~~g~-------~vivD~a~a~~ 188 (386)
T PRK06767 171 ------------------VAKRNGL-------LVIVDNTFCSP 188 (386)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999643
No 113
>PRK09082 methionine aminotransferase; Validated
Probab=98.97 E-value=3.1e-07 Score=103.76 Aligned_cols=156 Identities=12% Similarity=-0.013 Sum_probs=111.6
Q ss_pred HHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcc
Q psy11047 209 GDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQ 288 (943)
Q Consensus 209 gd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~ 288 (943)
-+.+...+......|.......+++..+.+|+.+++|.+... ....++|+|||+|+..++.+- +
T Consensus 49 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~~----~----- 112 (386)
T PRK09082 49 VEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA-------DSEITVTAGATEALFAAILAL----V----- 112 (386)
T ss_pred HHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCCHHHHHHHHHHHH----c-----
Confidence 344444443333344444456788889999999999875320 125889999999987776542 1
Q ss_pred cCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcc
Q psy11047 289 SHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367 (943)
Q Consensus 289 ~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~t 367 (943)
.+| ..|++..-+|.+...++..-+.+++.++.+ +.+.+|++++++.+... +.+|+.+.-.+.+
T Consensus 113 -~~g---------d~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPt 176 (386)
T PRK09082 113 -RPG---------DEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPR------TRLIILNTPHNPS 176 (386)
T ss_pred -CCC---------CEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCcc------ceEEEEeCCCCCC
Confidence 122 246777889988888885444588888886 46789999999988643 4566666667788
Q ss_pred ccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 368 LVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 368 GaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +++++|.+ +|++||+ |+++|.+|+..
T Consensus 177 G~~~~~~~~~~i~~--------------------~a~~~~i-------~li~De~y~~~ 208 (386)
T PRK09082 177 GTVWSAADMRALWQ--------------------LIAGTDI-------YVLSDEVYEHI 208 (386)
T ss_pred CcCCCHHHHHHHHH--------------------HHHHCCE-------EEEEehhhhhh
Confidence 976 56888888 9999999 99999999755
No 114
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=98.96 E-value=5.6e-07 Score=101.89 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.+..++|++++|.+.. ...+||+|||+||..|+.++|.. | .+-+|.+...-|-+
T Consensus 88 ~~la~~l~~~~~~~~~---------~~v~~~~sgsea~~~al~~~~~~----------g-------~~~ii~~~~~yhg~ 141 (398)
T PRK03244 88 IALAERLVELLGAPEG---------GRVFFCNSGAEANEAAFKLARLT----------G-------RTKIVAAEGGFHGR 141 (398)
T ss_pred HHHHHHHHHhCCCCCC---------CEEEEeCchHHHHHHHHHHHHHH----------C-------CCeEEEECCCcCCc
Confidence 3566688888875421 25899999999999999988741 1 12234444555655
Q ss_pred HHHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhh
Q psy11047 314 VEKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLG 377 (943)
Q Consensus 314 v~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa 377 (943)
...+..++.. .+..+|. .|+++|++.+.. .+.+|+..-..+.+|.+-| +++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~ 210 (398)
T PRK03244 142 TMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAAR 210 (398)
T ss_pred cHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHH
Confidence 5555433221 2333332 268888887742 2455555555677788766 88888
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ ++++|.++.|+
T Consensus 211 ~--------------------l~~~~~~-------llI~DEv~~g~ 229 (398)
T PRK03244 211 E--------------------ITDRHGA-------LLVLDEVQTGI 229 (398)
T ss_pred H--------------------HHHHcCC-------EEEEeccccCC
Confidence 8 9999999 99999999875
No 115
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.96 E-value=8.4e-08 Score=109.42 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=92.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+ .+++++|.+ ..++|+||++|+..++.+. + .+| -.|
T Consensus 59 ~~p~~~~le~----~la~l~g~~------------~~v~~ssG~~Ai~~al~al----~------~~G---------d~V 103 (390)
T PRK08133 59 TNPTVTMFQE----RLAALEGAE------------ACVATASGMAAILAVVMAL----L------QAG---------DHV 103 (390)
T ss_pred CChHHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 4566666666 457888864 3589999999998877642 1 122 236
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... .+...+.+++.++++ |.++++++|+.+ +.+|+....++.+|.+.|+++|++
T Consensus 104 i~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~-- 170 (390)
T PRK08133 104 VSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAE-- 170 (390)
T ss_pred EEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHH--
Confidence 777877766543 232223477777764 688898888653 567777777888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+..
T Consensus 171 ------------------la~~~gi-------~livD~t~~~~ 188 (390)
T PRK08133 171 ------------------IAHAAGA-------LLVVDNCFCTP 188 (390)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998654
No 116
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.95 E-value=1.4e-07 Score=107.74 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=92.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....||.. +|++.|.+ ..++|+||++|+..++.+. + .+| -.
T Consensus 50 ~~npt~~~Le~~----lA~leg~e------------~ivvt~gg~~Ai~~~l~al----l------~~G---------d~ 94 (388)
T PRK08861 50 SGNPNRGLLEQT----LSELESGK------------GAVVTNCGTSALNLWVSAL----L------GPD---------DL 94 (388)
T ss_pred CCCchHHHHHHH----HHHHhCCC------------eEEEECCHHHHHHHHHHHH----c------CCC---------CE
Confidence 456778888775 47777742 5799999999998776542 1 122 24
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..+.. . . ++.++..++. .|++++++++.++ +.+|+.+..++.+|.+-|+++|.+
T Consensus 95 Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~- 162 (388)
T PRK08861 95 IVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQ- 162 (388)
T ss_pred EEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 667777777655543 2 2 2235555542 4789998888653 668888888899999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 163 -------------------la~~~gi-------~vIvDea~~~~ 180 (388)
T PRK08861 163 -------------------KAKAVGA-------LVAVDNTFLTP 180 (388)
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999765
No 117
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.95 E-value=1.6e-07 Score=108.98 Aligned_cols=127 Identities=9% Similarity=-0.012 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|. .+|++.|.+ ..+++++|+.|+..++.+. + .+| -.|
T Consensus 67 ~~p~~~~Le~----~lA~l~g~~------------~av~~sSG~aAi~~al~al----l------~~G---------d~V 111 (436)
T PRK07812 67 MNPTQDVVEQ----RIAALEGGV------------AALLLASGQAAETFAILNL----A------GAG---------DHI 111 (436)
T ss_pred CCchHHHHHH----HHHHHhCCC------------eEEEEccHHHHHHHHHHHH----h------CCC---------CEE
Confidence 4577777776 457888764 3689999999988777542 1 122 235
Q ss_pred EecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... . + .+..++.++ +. -|+++++++|+++ +.+|+...-++.+|.+-|+++|++
T Consensus 112 v~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~-- 179 (436)
T PRK07812 112 VSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAE-- 179 (436)
T ss_pred EEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHH--
Confidence 66777777665543 1 2 223455553 22 2899998888744 567888888889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||++++..
T Consensus 180 ------------------la~~~gi-------~liVD~t~a~~ 197 (436)
T PRK07812 180 ------------------VAHEAGV-------PLIVDNTIATP 197 (436)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998754
No 118
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.94 E-value=2.9e-07 Score=104.75 Aligned_cols=312 Identities=12% Similarity=0.037 Sum_probs=190.5
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
..||....+-..+++.|..++|-... .--.++++||.+.-.|+.. .+ .|| -.
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~---------~~~ll~gsGt~amEAav~s----l~------~pg---------dk 82 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENG---------DVVLLSGSGTLAMEAAVAS----LV------EPG---------DK 82 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC---------cEEEEcCCcHHHHHHHHHh----cc------CCC---------Ce
Confidence 57888899999999999999997632 2357778888776444332 11 122 12
Q ss_pred EEecCCCchH--HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 304 AYCSDQAHSS--VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 304 V~~S~~aHyS--v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
|++....-|+ +.+-+...+.+++.+.++-.-.+|+++++++|+++.. .-.|..+++-|.||...|+++|++
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvlnpl~~I~~--- 155 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLNPLKEIAK--- 155 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCcccccCcHHHHHH---
Confidence 3333445554 4444433334788888876778999999999996532 458999999999999999999999
Q ss_pred ccccccccccccCchHHHHHHcCCCCCccchhhhHHhh--hcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 382 VKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL--VLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA--~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|++||. .+-|||- +||- .+
T Consensus 156 -----------------~~k~~g~-------l~iVDaVsS~Gg~-~~--------------------------------- 177 (383)
T COG0075 156 -----------------AAKEHGA-------LLIVDAVSSLGGE-PL--------------------------------- 177 (383)
T ss_pred -----------------HHHHcCC-------EEEEEecccCCCc-cc---------------------------------
Confidence 9999999 9999987 4444 11
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccCccCcc--------hhhhhcccC-c-cccccCCC---CcccccCccccCCCC
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSG--------ALHRTFNVE-P-LYLRHENS---GLAIDYMHWQIPLSK 526 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~--------~L~~af~~~-p-~YL~~~~~---g~~~d~~~~tie~SR 526 (943)
...+ + .+|-+....+|.|..+-+- .+....... + -|+.-... -......++|.+-+
T Consensus 178 --~vd~---w-----giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~- 246 (383)
T COG0075 178 --KVDE---W-----GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVN- 246 (383)
T ss_pred --chhh---c-----CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHH-
Confidence 1111 1 4688889999998822211 111111111 1 23221100 00000111222110
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 527 RFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 527 rfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
-+ ..+--+++.+=.+|+.+.+++ |.++
T Consensus 247 ~i--~aL~~al~~i~~EGle~r~~R---------------------------------------------------H~~~ 273 (383)
T COG0075 247 LI--YALREALDLILEEGLEARIAR---------------------------------------------------HRRL 273 (383)
T ss_pred HH--HHHHHHHHHHHHhhHHHHHHH---------------------------------------------------HHHH
Confidence 00 111223343444444444444 6788
Q ss_pred HHHHHHHHhCCCCeEEecCC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeec--ccCCCcEEEE-eecCCCCHHH
Q psy11047 607 AQKFEALVLGDPRFEIPAAR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPA--SLRIQGLGRA-QNFTRTTNDD 680 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t--~~~g~~~lR~-v~~~~tt~ed 680 (943)
++.+.+.+++. +|+++.++ ...+.+|..+..-. ...+..++.+++.+.+++- ++.| .++|+ .++ ..+..|
T Consensus 274 ~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~~-~~~~~~~~~~~~g~~i~gg~~~l~g-kifRIGhMG-~~~~~d 349 (383)
T COG0075 274 AEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGVD-DKKVRRALLKEYGVEIAGGQGPLKG-KIFRIGHMG-NVRPED 349 (383)
T ss_pred HHHHHHHHHHc-CCccccCcccCCCceEEEECCCCCC-cHHHHHHHHHhCCEEecccccccCc-cEEEEecCc-cCCHHH
Confidence 99999999887 78888733 24556677653211 2344445555544455432 2333 48999 777 889999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTATEIL 696 (943)
Q Consensus 681 Id~ll~~I~~~~~~ll 696 (943)
+...+.+|..+..++.
T Consensus 350 v~~~l~ale~~L~~~g 365 (383)
T COG0075 350 VLAALAALEAALRELG 365 (383)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999988876653
No 119
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.94 E-value=9.7e-08 Score=109.25 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+|+++|.+. ..++++|+.|+..++.+. + .+| -.|
T Consensus 63 ~~p~~~~Le~----~lA~l~G~~~------------~~~~~sG~~Ai~~~l~~~----l------~~G---------d~V 107 (398)
T PRK07504 63 SNPTVDMFEK----RMCALEGAED------------ARATASGMAAVTAAILCQ----V------KAG---------DHV 107 (398)
T ss_pred CCchHHHHHH----HHHHHhCCCe------------eeEecCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 3577777775 5578888864 356889999987666431 1 122 236
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...+.+..... ...+.+++.++ .+|+++++++|+++ +.+|+.+..++.+|.+-|+++|.+
T Consensus 108 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~-- 174 (398)
T PRK07504 108 VAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAK-- 174 (398)
T ss_pred EEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHH--
Confidence 66676666543332 11233555554 27899999988653 678888888899999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|++|+..
T Consensus 175 ------------------la~~~gi-------~lvvD~a~a~~ 192 (398)
T PRK07504 175 ------------------IANQAGA-------KLVVDNVFATP 192 (398)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
No 120
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.94 E-value=8.5e-07 Score=101.28 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=101.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++-..+.+|+++.+|.+-.. ....++|+|++++...++.+- + .+| -
T Consensus 74 Y~~~~G~~~LR~aia~~l~~~~g~~~~~-------~~~I~it~Ga~~al~~~~~~l----~------~~G---------d 127 (405)
T PRK06207 74 YTEYRGDADIRELLAARLAAFTGAPVDA-------ADELIITPGTQGALFLAVAAT----V------ARG---------D 127 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCCEEEeCCcHHHHHHHHHHh----c------CCC---------C
Confidence 4433445678888999999999975220 026899999999986665431 1 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecC-----CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HH
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESD-----DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-----~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~ 374 (943)
.|++.+-++......+..-+.+++.|+++ .++.+|+++|+++++.. +.+|+.+.-.+-+|.+-+ ++
T Consensus 128 ~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~e~l~ 201 (405)
T PRK06207 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFLFSNPNNPAGVVYSAEEIA 201 (405)
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhc------CeEEEECCCCCCCCcCCCHHHHH
Confidence 35556667777666665433477788775 35789999999988653 456777777899999877 66
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +|++||+ |+.+|.+|+-+
T Consensus 202 ~l~~--------------------~a~~~~~-------~iI~De~Y~~~ 223 (405)
T PRK06207 202 QIAA--------------------LARRYGA-------TVIVDQLYSRL 223 (405)
T ss_pred HHHH--------------------HHHHcCC-------EEEEecccccc
Confidence 6777 8999999 99999999865
No 121
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.94 E-value=2e-07 Score=113.06 Aligned_cols=129 Identities=7% Similarity=0.035 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH
Q psy11047 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK 316 (943)
Q Consensus 237 i~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K 316 (943)
-+..|++||.+.. -.+|.|+|.||..++.++- .+| -.|++...+|-|+..
T Consensus 201 e~~AA~~fgAd~t-----------yfvvNGTS~~n~av~~a~~----------~~G---------d~VLvdRN~HKSv~h 250 (714)
T PRK15400 201 EEYIARVFNADRS-----------YMVTNGTSTANKIVGMYSA----------PAG---------STVLIDRNCHKSLTH 250 (714)
T ss_pred HHHHHHHhCCCcE-----------EEEeCchHHHHHHHHHHhc----------CCC---------CEEEeecccHHHHHH
Confidence 3456899999865 4688888999987766532 122 357889999999999
Q ss_pred HHHHCCccEEEEecC--CC---CCcC-----HHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 317 AGLIGLVNMRYIESD--DK---LSLR-----GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 317 Aa~LG~~~v~~Vp~D--~~---grmD-----~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
|+.|.+...++++++ .. |.++ .+.+++.|++.... ..|+.++.|.. |.-|.+-++++|.+
T Consensus 251 aLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~p-TYdG~~yd~~~I~~-------- 320 (714)
T PRK15400 251 LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYNTDFIKK-------- 320 (714)
T ss_pred HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECC-CCccEecCHHHHHH--------
Confidence 887766666666543 11 2345 89999999887643 35777888777 66699999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+|+.++ +|||-|||+...|
T Consensus 321 ------------~~~~~~---------ilvDEAwgah~~F 339 (714)
T PRK15400 321 ------------TLDVKS---------IHFDSAWVPYTNF 339 (714)
T ss_pred ------------HhCCCC---------EEEEccchhhhcc
Confidence 886554 5999999998444
No 122
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.93 E-value=2.2e-07 Score=112.72 Aligned_cols=127 Identities=9% Similarity=0.070 Sum_probs=94.4
Q ss_pred HHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHH
Q psy11047 238 NWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA 317 (943)
Q Consensus 238 ~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA 317 (943)
+..|+.||.+.. -.+|.|+|.||..++.++- .+| -.|++...+|-|+..|
T Consensus 202 ~~aA~~fgAd~t-----------yfvvNGTS~~n~av~~a~~----------~~G---------d~VLvdRN~HKSv~~a 251 (713)
T PRK15399 202 EYIARTFGAEQS-----------YIVTNGTSTSNKIVGMYAA----------PAG---------STLLIDRNCHKSLAHL 251 (713)
T ss_pred HHHHHHhCCCcE-----------EEEeCChHHHHHHHHHHhc----------CCC---------CEEEeecccHHHHHHH
Confidence 455899999865 4688899999988877642 122 3578899999999998
Q ss_pred HHHCCccEEEEecC--C---CCCcCH-----HHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccc
Q psy11047 318 GLIGLVNMRYIESD--D---KLSLRG-----DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 387 (943)
Q Consensus 318 a~LG~~~v~~Vp~D--~---~grmD~-----daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~ 387 (943)
+.|.+...+++++. . -|.++. +.++++|++.... ..|..++.|.+ |.-|.+-++++|.+
T Consensus 252 Lilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~--------- 320 (713)
T PRK15399 252 LMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQ--------- 320 (713)
T ss_pred HHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHH---------
Confidence 87766666666543 2 234455 9999999887643 35788888877 66689999999999
Q ss_pred ccccccCchHHHHHHcCCCCCccchh-hhHHhhhcCCCcc
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLA-QKFEALVLGDPRF 426 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lw-LHVDAA~GG~~af 426 (943)
+| |+ . +|||-|||+...|
T Consensus 321 -----------~~---g~-------~~ilvDEAhgah~~F 339 (713)
T PRK15399 321 -----------TL---DV-------PSIHFDSAWVPYTHF 339 (713)
T ss_pred -----------Hh---CC-------CEEEEeccchhhhhc
Confidence 77 66 4 4999999998444
No 123
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=98.92 E-value=5.3e-07 Score=99.97 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++++|+.++.+.+ ..++|+|+++++..++.+.. .+| -.|++++-.+...
T Consensus 64 ~lr~aia~~~~~~~~----------~I~it~G~~~al~~~~~~l~----------~~g---------d~vlv~~P~y~~~ 114 (353)
T PRK05387 64 ALRQAIAAYYGLDPE----------QVFVGNGSDEVLAHAFLAFF----------NHD---------RPLLFPDITYSFY 114 (353)
T ss_pred HHHHHHHHHhCCCHH----------HEEEcCCHHHHHHHHHHHhc----------CCC---------CEEEEeCCCHHHH
Confidence 567778888887654 68999999999877665421 122 2355566555444
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+..-+.+++.++.++++.+|+++|++ . ..+|+.+...+-+|.+-|.+++.+
T Consensus 115 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~------~~~v~~~~P~NPtG~~~~~~~~~~---------------- 168 (353)
T PRK05387 115 PVYAGLYGIPYEEIPLDDDFSIDVEDYLR----P------NGGIIFPNPNAPTGIALPLAEIER---------------- 168 (353)
T ss_pred HHHHHHcCCEEEEeecCCCCCCCHHHHHh----c------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 44444433488899998889999999863 1 235667778999999999999998
Q ss_pred chHHHHHHc-CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY-FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~-Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.+ ++ |+.+|.+|+.+
T Consensus 169 ----l~~~~~~~-------~livDe~y~~~ 187 (353)
T PRK05387 169 ----ILAANPDS-------VVVIDEAYVDF 187 (353)
T ss_pred ----HHHhCCCc-------EEEEeCccccc
Confidence 87765 78 99999998543
No 124
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.92 E-value=1.2e-07 Score=108.18 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=89.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|.+.++|+. +|+++|.+ ..+++++|+.|+..++.+. + .+| -.
T Consensus 56 ~~~p~~~~le~~----lA~l~g~~------------~av~~~sG~~Ai~~~l~al----~------~~G---------d~ 100 (391)
T TIGR01328 56 LGNPTVSNLEGR----IAFLEGTE------------AAVATSSGMGAIAATLLTI----L------KAG---------DH 100 (391)
T ss_pred CCCchHHHHHHH----HHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CE
Confidence 356778888875 58888874 3589999999987665432 1 122 13
Q ss_pred EEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+.. ..+..-+..+..++.+ |+++++++|.++ +.+|+....++.+|.+-|+++|.+
T Consensus 101 Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~- 168 (391)
T TIGR01328 101 LISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCR- 168 (391)
T ss_pred EEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 556666664332 2232223466777664 688998888653 567777777788899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+||+..
T Consensus 169 -------------------la~~~gi-------~livD~a~a~~ 186 (391)
T TIGR01328 169 -------------------DAHSQGV-------KVIVDNTFATP 186 (391)
T ss_pred -------------------HHHHcCC-------EEEEECCCchh
Confidence 9999999 99999999754
No 125
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=98.91 E-value=2.7e-07 Score=103.26 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+++++.+|++.+ ..++|+|++++...++.+. . .+| +-.|++++-++..
T Consensus 60 ~~l~~~~a~~~g~~~~----------~I~~~~Gs~e~i~~~~~~~----~------~~g--------~~~vli~~P~y~~ 111 (351)
T PRK01688 60 KAVIENYAAYAGVKPE----------QVLVSRGADEGIELLIRAF----C------EPG--------KDAILYCPPTYGM 111 (351)
T ss_pred HHHHHHHHHHhCCCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC--------CCEEEEcCCCHHH
Confidence 3677789999998765 6889999999986665431 1 111 1246667778877
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 393 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~ 393 (943)
...++..-+.+++.+|.++++.+|++++++++. . +.+|+.+...+-||.+-+.+++.+
T Consensus 112 y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~--------------- 169 (351)
T PRK01688 112 YSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRT--------------- 169 (351)
T ss_pred HHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHH---------------
Confidence 777775544588899998889999999988772 2 456777788999999988887777
Q ss_pred CchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 394 TNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 394 RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. +. ++.+|.||.-+
T Consensus 170 -----l~~~~~~~~-------~vivDEay~~f 189 (351)
T PRK01688 170 -----LLELTRGKA-------IVVADEAYIEF 189 (351)
T ss_pred -----HHHhCCCCc-------EEEEECchhhc
Confidence 55432 46 89999999654
No 126
>PRK07682 hypothetical protein; Validated
Probab=98.91 E-value=1.5e-06 Score=97.75 Aligned_cols=143 Identities=10% Similarity=-0.017 Sum_probs=101.5
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|...+...++...+.+|+.+.+|.+-.. ....++|+||++|+..++.+. . .+|
T Consensus 52 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~~i~~t~G~~~al~~~~~~l----~------~~g--------- 105 (378)
T PRK07682 52 SYTANAGLLELRQEIAKYLKKRFAVSYDP-------NDEIIVTVGASQALDVAMRAI----I------NPG--------- 105 (378)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCChHHHHHHHHHHh----C------CCC---------
Confidence 34445567788888999998888874220 025899999999987665432 1 122
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
-.|++++-++.....++.+-+..++.++.+ +++.+|+++|++++... +.+++.+...+.+|.+-+ +++|
T Consensus 106 d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 106 DEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHH
Confidence 236667777777666664333467777764 36789999999988643 455666667888898754 7777
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++|++ ++.+|.+|+.+
T Consensus 180 ~~--------------------~~~~~~~-------~ii~De~y~~~ 199 (378)
T PRK07682 180 AV--------------------IVEKHDL-------IVLSDEIYAEL 199 (378)
T ss_pred HH--------------------HHHHcCc-------EEEEehhhhhc
Confidence 77 9999999 99999999876
No 127
>PRK08363 alanine aminotransferase; Validated
Probab=98.91 E-value=1.8e-06 Score=97.94 Aligned_cols=155 Identities=9% Similarity=-0.110 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|...+...+++..+.+|+.+..|++-. ....++|+|+|+++..++.+. .
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~it~G~~~al~~~~~~~----~---- 114 (398)
T PRK08363 51 MKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDIT--------PDDVRVTAAVTEALQLIFGAL----L---- 114 (398)
T ss_pred HHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC--------hhhEEEeCCHHHHHHHHHHHh----C----
Confidence 334444444322223444556678888888888777665322 136789999999987776542 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEE-ecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYI-ESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~V-p~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| -.|++++-++.+...++. .|. .++.+ +.++ .+.+|.++|++.+... +.+|+.+...
T Consensus 115 --~~g---------d~Vl~~~p~y~~~~~~~~~~g~-~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~ 176 (398)
T PRK08363 115 --DPG---------DEILIPGPSYPPYTGLVKFYGG-VPVEYRTIEEEGWQPDIDDIRKKITEK------TKAIAVINPN 176 (398)
T ss_pred --CCC---------CEEEEcCCCCcchHHHHHHcCC-EEEEeccccccCCcCCHHHHHhhCCcc------eEEEEEECCC
Confidence 122 246777778887777764 564 44445 4544 4579999999887543 4566777778
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|.+-+ +++|.+ +|+++|+ |+.+|.+|+..
T Consensus 177 NPtG~~~~~~~~~~l~~--------------------~a~~~~~-------~li~Deay~~~ 211 (398)
T PRK08363 177 NPTGALYEKKTLKEILD--------------------IAGEHDL-------PVISDEIYDLM 211 (398)
T ss_pred CCCCcCcCHHHHHHHHH--------------------HHHHcCe-------EEEEhhhhhhh
Confidence 88998866 778888 9999999 99999999865
No 128
>KOG0630|consensus
Probab=98.90 E-value=8.1e-09 Score=117.14 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=126.1
Q ss_pred CceEEEecCCCchHHHH-HH-HHCCc--cEEEEecC----CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 300 SRLVAYCSDQAHSSVEK-AG-LIGLV--NMRYIESD----DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~K-Aa-~LG~~--~v~~Vp~D----~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
..+++|+|+..|.-... +| .+|.. .+..++-. -.|+||...+++.|++|..+|..|.++++..|++.+|.+|
T Consensus 230 aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD 309 (838)
T KOG0630|consen 230 AAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND 309 (838)
T ss_pred cCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence 45789999999987543 56 47753 34444422 2569999999999999999999999999999999999999
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcC-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHH
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEK 450 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~k 450 (943)
.+-.|.+ +|+++. . |+|.-|.--+ ++ +|+-.+.
T Consensus 310 mi~kild--------------------i~eahakf-------WLHasGhaiA--AL-----------t~aepnn------ 343 (838)
T KOG0630|consen 310 MILKILD--------------------ICEAHAKF-------WLHASGHAIA--AL-----------TCAEPNN------ 343 (838)
T ss_pred HHHHHHH--------------------HHHHhhhe-------eEeeccchhh--he-----------eecCccc------
Confidence 9999999 999987 6 9998765222 22 0110000
Q ss_pred HHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcch--hhhhcccCccccccCCCCcccccCccccCCCCCc
Q psy11047 451 LLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGA--LHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF 528 (943)
Q Consensus 451 ll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~--L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf 528 (943)
..-+. .+..||++++.--||+++..-. |++-+ .|.........+-.+|+.
T Consensus 344 -----------il~HV------~eqldSMal~ialWLGiPSaPiV~LHRPl-----------eg~aaSafesdpi~rekL 395 (838)
T KOG0630|consen 344 -----------ILGHV------EEQLDSMALNIALWLGIPSAPIVLLHRPL-----------EGSAASAFESDPILREKL 395 (838)
T ss_pred -----------chhHH------HHHHhhccchhHHHhCCCCCceEEeeccc-----------ccccchhcccChHHHHhh
Confidence 01111 2467999999999999765322 11111 111111111122356789
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 529 RALKLWFVIRNFGIKGLQKHIREIF 553 (943)
Q Consensus 529 rALklW~tLr~~G~~Gl~~~I~~~l 553 (943)
.+|.+|.+++++|...+.++|+..+
T Consensus 396 daLp~Wta~q~LggKaIadmienAF 420 (838)
T KOG0630|consen 396 DALPLWTALQALGGKAIADMIENAF 420 (838)
T ss_pred ccchHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999999854
No 129
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.90 E-value=2.3e-07 Score=107.64 Aligned_cols=137 Identities=12% Similarity=-0.040 Sum_probs=93.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
..|..+|...++|..+ ++++|.+ ..++|++||.|+.++..+. + .||
T Consensus 72 d~Yagd~s~~~LE~~v----Ae~lG~e------------~aV~v~sGTaAl~ll~~l~----v------~pG-------- 117 (460)
T PRK13237 72 EAYAGSRNFYHLEETV----QEYYGFK------------HVVPTHQGRGAENLLSRIA----I------KPG-------- 117 (460)
T ss_pred hhhcCCCcHHHHHHHH----HHHHCCC------------eEEEeCCHHHHHHHHHHhC----C------CCc--------
Confidence 5689999999999866 6788886 3699999999987642210 1 122
Q ss_pred ceEEEecCCCchHHHHHH-HHCCccEEEEe----------cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc-
Q psy11047 301 RLVAYCSDQAHSSVEKAG-LIGLVNMRYIE----------SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL- 368 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp----------~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG- 368 (943)
+ + ++...|++..++. ..++....-+. -..+|.||+++|+++|++... ..+.+|+++..++..|
T Consensus 118 d-~--Vp~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~--~~~~lV~a~itvn~~GG 192 (460)
T PRK13237 118 Q-Y--VPGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA--ENIAYICLAVTVNLAGG 192 (460)
T ss_pred C-E--ECCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC--CccCceEEEEecccCCC
Confidence 2 2 2777888888875 33332222221 124799999999999985422 1244566666666663
Q ss_pred c---cccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 369 V---VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 369 a---IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
. ..++.+|.+ +|++||+ .+|.|||....
T Consensus 193 qpvs~~~m~~I~e--------------------lA~~~Gl-------~Vi~DaAra~g 223 (460)
T PRK13237 193 QPVSMANMRAVRE--------------------LCDKHGI-------KVFFDATRCVE 223 (460)
T ss_pred eeCCHHhHHHHHH--------------------HHHHcCC-------EEEEECcchhc
Confidence 2 356888888 9999999 99999997544
No 130
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.90 E-value=1.9e-07 Score=106.76 Aligned_cols=127 Identities=10% Similarity=0.055 Sum_probs=91.1
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|. .++++.|.+ ..++|+|||+|+..++.+. + .+| -.
T Consensus 62 ~~~pt~~~Le~----~lA~l~g~~------------~~l~~~sgt~Ai~~~l~al----~------~~G---------D~ 106 (394)
T PRK07050 62 HATPTSLALAQ----RLAEIEGGR------------HALLQPSGLAAISLVYFGL----V------KAG---------DD 106 (394)
T ss_pred CCCHHHHHHHH----HHHHHhCCC------------eEEEeccHHHHHHHHHHHH----h------CCC---------CE
Confidence 34566777776 457788753 4789999999998887653 1 123 24
Q ss_pred EEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+.... +...+.+++.++.+ +.++++++|+.+ +.+|+....++.+|.+.++++|++
T Consensus 107 Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~- 174 (394)
T PRK07050 107 VLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITA- 174 (394)
T ss_pred EEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHH-
Confidence 67778788765542 22233466666542 456777777543 567777777778899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|+||+..
T Consensus 175 -------------------ia~~~gi-------~livD~a~a~~ 192 (394)
T PRK07050 175 -------------------AARARGV-------VTAIDNTYSAG 192 (394)
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999765
No 131
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=1.3e-06 Score=99.40 Aligned_cols=307 Identities=16% Similarity=0.173 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.+|.+.++|+ ++++.+|... .+.+++||.|+.+||.+.- + .|| -.|
T Consensus 32 ~G~~v~~FE~----~~ae~~G~k~------------ava~~sgT~AL~laL~al~---i------g~G---------DeV 77 (374)
T COG0399 32 GGPFVRRFEQ----AFAEYLGVKY------------AVAVSSGTAALHLALLALA---I------GPG---------DEV 77 (374)
T ss_pred cChHHHHHHH----HHHHHhCCCe------------EEEecChHHHHHHHHHhcC---C------CCC---------CEE
Confidence 3899999998 6688999864 6899999999999987521 1 122 247
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+-.+...+...-+...+.|.+| +.+.||++.++++|++. +..|+..+ ..|..-+++.|.+
T Consensus 78 I~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~------tKAIipVh---l~G~~~dm~~i~~----- 143 (374)
T COG0399 78 IVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR------TKAIIPVH---LAGQPCDMDAIMA----- 143 (374)
T ss_pred EecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC------CeEEEEeh---hccCCCCHHHHHH-----
Confidence 788888888877775444488899998 56999999999999986 44444432 3455557899998
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccc
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHC 463 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~ 463 (943)
+|++||+ ++--|+|++-+..+ + |
T Consensus 144 ---------------la~~~~l-------~vIEDaAqa~Ga~y---------------~----------------g---- 166 (374)
T COG0399 144 ---------------LAKRHGL-------PVIEDAAQAHGATY---------------K----------------G---- 166 (374)
T ss_pred ---------------HHHHcCC-------eEEEEcchhccCee---------------c----------------C----
Confidence 9999999 99999998766222 0 0
Q ss_pred cchhhhhcCCCCeeEEEEcCCCccCccCcchhh---hhcccCccccccCCCCcccc--cCccccCCCCCcchHHHHHHHH
Q psy11047 464 VPASLRIQGLGRAQNFTIVPSSLLRVKNSGALH---RTFNVEPLYLRHENSGLAID--YMHWQIPLSKRFRALKLWFVIR 538 (943)
Q Consensus 464 p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~---~af~~~p~YL~~~~~g~~~d--~~~~tie~SRrfrALklW~tLr 538 (943)
..+-.+..+-+++|-++|.+.+-+++.+. ..+......+... |...+ ...+-...+=..|= =-...
T Consensus 167 ----k~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~h--G~~~~~~~~y~~~~~G~N~rm---~~iqA 237 (374)
T COG0399 167 ----KKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNH--GLSRDAVFKYLHEELGYNYRL---TEIQA 237 (374)
T ss_pred ----cccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHh--CcCCCccccceeeecccccCH---HHHHH
Confidence 01222456789999999999833332220 0000011112111 11110 00000011111110 01233
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCC
Q psy11047 539 NFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDP 618 (943)
Q Consensus 539 ~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p 618 (943)
++|...|...=+. ++ + ..++++...+.|++.+
T Consensus 238 Aigl~QL~~l~~~-~~----------------------~-------------------------R~~~a~~Y~~~l~~~~ 269 (374)
T COG0399 238 AIGLAQLERLDEI-NE----------------------R-------------------------RREIAQIYAEALKGLP 269 (374)
T ss_pred HHHHHHHHHHHHH-HH----------------------H-------------------------HHHHHHHHHHHhhcCC
Confidence 4454444322221 10 0 3567888888999988
Q ss_pred CeEEecCCCcc-----EEEEEecCCChHHHHHHHHHhccCc---EEEeeccc---------------C-----CCcEEEE
Q psy11047 619 RFEIPAARHLG-----MVVIRLLGENILTEKLLKRLNSKGR---LHCVPASL---------------R-----IQGLGRA 670 (943)
Q Consensus 619 ~~eIl~~~~l~-----iV~Fr~~g~n~l~~~Ll~~L~~~G~---~~~s~t~~---------------~-----g~~~lR~ 670 (943)
++.+..++... +...+++.....-..+.+.|+++|. .|..|... . ....+.+
T Consensus 270 ~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~L 349 (374)
T COG0399 270 GITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSL 349 (374)
T ss_pred CccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEc
Confidence 87776655433 2222333221224678888888753 33333111 0 1346777
Q ss_pred eecCCCCHHHHHHHHHHHHHHHH
Q psy11047 671 QNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 671 v~~~~tt~edId~ll~~I~~~~~ 693 (943)
=++|..+++|++++++.|+++..
T Consensus 350 P~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 350 PLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999988754
No 132
>PRK07324 transaminase; Validated
Probab=98.89 E-value=1.3e-06 Score=98.69 Aligned_cols=112 Identities=9% Similarity=-0.089 Sum_probs=84.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD 337 (943)
..++|+|+|+++..++.+. + .+| + .|+++.-++.+....+..-+.+++.+|++. .+.+|
T Consensus 82 ~vi~t~G~~~al~~~~~~l----~------~~g--------d-~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d 142 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL----V------EPG--------D-HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPD 142 (373)
T ss_pred hEEEcCChHHHHHHHHHHh----C------CCC--------C-EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 5789999999998876642 1 122 2 356666677777766644334788888864 34689
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
++++++.+..+ +.+++.+..++.+|.+-+ +++|++ +|++||+ |+
T Consensus 143 ~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~--------------------~a~~~~~-------~i 189 (373)
T PRK07324 143 LDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVE--------------------IARSVDA-------YV 189 (373)
T ss_pred HHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EE
Confidence 99998877543 557778888899998877 888888 9999999 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
++|.+|...
T Consensus 190 i~De~y~~l 198 (373)
T PRK07324 190 LSDEVYRPL 198 (373)
T ss_pred EEEcccccc
Confidence 999999765
No 133
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=98.88 E-value=4.4e-07 Score=103.72 Aligned_cols=330 Identities=14% Similarity=0.069 Sum_probs=195.0
Q ss_pred CCCCCCCCceeEEccCCCChHHHHHHHHHHHHhc------cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCC
Q psy11047 185 GITHWQSPYMHAYFPALNSYPSLLGDMLSDAINC------LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSP 258 (943)
Q Consensus 185 ~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~------n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~ 258 (943)
..+.|.+-.|+|.-.. |.++..+....-.. .......++.-.+||.+ ||+++|.+.
T Consensus 40 ~~~nf~SNdYLGLa~~----~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~----lA~f~g~e~---------- 101 (388)
T COG0156 40 KVLNFCSNDYLGLASH----PELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEE----LADFLGAEA---------- 101 (388)
T ss_pred eeEeeeccCcccccCC----HHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHH----HHHHhCCCc----------
Confidence 3456777778775433 34444433333221 11223445667788875 588888874
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCH
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRG 338 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~ 338 (943)
.++-++|=.||+-.+-+ +. .++.+|+.-+..|.|+.+++.++...++...= .|+
T Consensus 102 --al~f~SGy~AN~~~i~~-----l~--------------~~~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~ 155 (388)
T COG0156 102 --ALLFSSGFVANLGLLSA-----LL--------------KKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDL 155 (388)
T ss_pred --EEEEcccchhHHHHHHH-----hc--------------CCCcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCH
Confidence 45556677888654432 11 12356888899999999999987767666653 578
Q ss_pred HHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHh
Q psy11047 339 DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 418 (943)
Q Consensus 339 daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDA 418 (943)
++|++.|++....+..+.+|+.----...|.+-||.+|.+ ++++||. |+.||-
T Consensus 156 ~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~--------------------L~~ky~a-------~L~VDE 208 (388)
T COG0156 156 DHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVE--------------------LAEKYGA-------LLYVDE 208 (388)
T ss_pred HHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHH--------------------HHHHhCc-------EEEEEc
Confidence 9999999987654432344443333445699999999999 9999999 999999
Q ss_pred hhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC--CeeEEEEcCCCccC-----ccC
Q psy11047 419 LVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG--RAQNFTIVPSSLLR-----VKN 491 (943)
Q Consensus 419 A~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie--~ADSItiDpHK~L~-----vr~ 491 (943)
|++-+ .+ | ++|+=++..+ |++ ..|.+....-|.++ +-.
T Consensus 209 AHa~G-v~--------G---------------------~~GrG~~e~~-----g~~~~~vdi~~gTlsKAlGs~Gg~v~g 253 (388)
T COG0156 209 AHAVG-VL--------G---------------------PNGRGLAEHF-----GLEPEEVDIIVGTLGKALGSSGGYIAG 253 (388)
T ss_pred ccccc-cc--------C---------------------CCCccHHHHh-----CCCCccceEEEEEchhhhcccCceeeC
Confidence 99877 32 1 1111122221 443 45899999999999 222
Q ss_pred cchhhhhc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy11047 492 SGALHRTF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCL 570 (943)
Q Consensus 492 ~~~L~~af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~ 570 (943)
...+.+.+ ....+|++... + -+..+..+-.+++.+- -..+...+
T Consensus 254 ~~~~~d~L~~~ar~~ifSta-----------l---pP~~aaa~~~al~~l~--~~~~~r~~------------------- 298 (388)
T COG0156 254 SAALIDYLRNRARPFIFSTA-----------L---PPAVAAAALAALRILE--EGPERRER------------------- 298 (388)
T ss_pred cHHHHHHHHHhCCceeccCC-----------C---CHHHHHHHHHHHHHHH--hCHHHHHH-------------------
Confidence 22222211 11233433210 0 0111111111122110 00001111
Q ss_pred chhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHh
Q psy11047 571 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLN 650 (943)
Q Consensus 571 g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~ 650 (943)
..+++.+|...+.. .++.+ .+....|+.+.+.+ +.....+...|.
T Consensus 299 --------------------------------L~~~~~~~~~~~~~-~~~~~-~~s~s~I~pv~~gd-~~~a~~~s~~l~ 343 (388)
T COG0156 299 --------------------------------LQELAAFFRSLLKA-LGLVL-LPSESPIIPVILGD-EERALEASRALL 343 (388)
T ss_pred --------------------------------HHHHHHHHHHHHHh-cCCcc-CCCCCCeeeeEeCC-HHHHHHHHHHHH
Confidence 12344444433322 23333 35567778777654 345677777888
Q ss_pred ccCcEEEe----ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 651 SKGRLHCV----PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 651 ~~G~~~~s----~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
++|. ++. ||.-.+..-+|++++...|++||+++++.+.++
T Consensus 344 ~~Gi-~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 344 EEGI-YVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HCCe-eEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 8764 554 555567788999999999999999999988764
No 134
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=98.88 E-value=1.8e-08 Score=115.79 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+..|+++|.+.. -.+|.|+|.+|..++.++- .|| -.|++...+|-|+
T Consensus 70 eAe~~aA~~fGAd~t-----------~flvnGsT~g~~a~i~a~~----------~~g---------d~VLv~RN~HkSv 119 (417)
T PF01276_consen 70 EAEELAARAFGADKT-----------FFLVNGSTSGNQAMIMALC----------RPG---------DKVLVDRNCHKSV 119 (417)
T ss_dssp HHHHHHHHHHTESEE-----------EEESSHHHHHHHHHHHHHT----------TTT---------CEEEEETT--HHH
T ss_pred HHHHHHHHhcCCCeE-----------EEEecCchHHHHHHHHHhc----------CCC---------CEEEEcCCcHHHH
Confidence 344567999999875 3678888888988877642 122 3588899999999
Q ss_pred HHHHHHCCccEEEEecC-C----CCCcCH-----HHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 315 EKAGLIGLVNMRYIESD-D----KLSLRG-----DKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D-~----~grmD~-----daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
..|+.|.+...++|++. + -+.+++ +.++++|++.+.... +.+|+.|.. |..|.+-++++|++
T Consensus 120 ~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~P-TY~Gv~~di~~I~~------ 191 (417)
T PF01276_consen 120 YNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSP-TYYGVCYDIKEIAE------ 191 (417)
T ss_dssp HHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS--TTSEEE-HHHHHH------
T ss_pred HHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCC-CCCeEEECHHHHHH------
Confidence 99998766666666553 2 224556 999999998765332 455666654 56699999999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+|+++|+ .++||.|||+...|
T Consensus 192 --------------~~h~~~~-------~llvDEAhGah~~F 212 (417)
T PF01276_consen 192 --------------ICHKHGI-------PLLVDEAHGAHFGF 212 (417)
T ss_dssp --------------HHCCTEC-------EEEEE-TT-TTGGC
T ss_pred --------------HhcccCC-------EEEEEccccccccC
Confidence 9999999 99999999998554
No 135
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=98.88 E-value=3.7e-07 Score=101.89 Aligned_cols=126 Identities=10% Similarity=-0.042 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+|+++|.+.+ ..++|+|+++++...+.+. . .+| ..|++++-++...
T Consensus 71 ~lr~~ia~~~~~~~~----------~i~~t~G~~~~l~~~~~~l----~------~~g---------d~vl~~~p~y~~~ 121 (367)
T PRK02731 71 ELKAALAEKFGVDPE----------RIILGNGSDEILELLARAY----L------GPG---------DEVIYSEHGFAVY 121 (367)
T ss_pred HHHHHHHHHhCcCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEEecCCHHHH
Confidence 455667788887643 5789999998764433321 1 112 2356666666555
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.++. +++.+|++++++.++.. +.+|+.+..++.+|.+-|++++.+
T Consensus 122 ~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~---------------- 178 (367)
T PRK02731 122 PIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVER---------------- 178 (367)
T ss_pred HHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHH----------------
Confidence 5445433447888888 46789999999988632 566777788899999999999988
Q ss_pred chHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.+ |+ |+.+|.+|..+
T Consensus 179 ----l~~~~~~~~-------~li~De~y~~~ 198 (367)
T PRK02731 179 ----FLAGVPPDV-------LVVLDEAYAEY 198 (367)
T ss_pred ----HHHhCCCCc-------EEEEECcHHHh
Confidence 77764 78 99999999765
No 136
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.88 E-value=2.3e-07 Score=105.87 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=91.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|+.+ |+++|.+ ..++++||+.|+..++.+. + .+| -.
T Consensus 50 ~~np~~~~lE~~l----A~l~g~~------------~~l~~~sG~~Ai~~~l~~l----l------~~G---------D~ 94 (385)
T PRK08574 50 EENPTLRPLEEAL----AKLEGGV------------DALAFNSGMAAISTLFFSL----L------KAG---------DR 94 (385)
T ss_pred CCCccHHHHHHHH----HHHhCCC------------cEEEeCCHHHHHHHHHHHH----h------CCC---------CE
Confidence 4567888888754 7888864 3588899999998777642 1 122 24
Q ss_pred EEecCCCchHHHHHHH-HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHSSVEKAGL-IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHySv~KAa~-LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
|+++...|.+....+. +. +.++..+. +|.++++++|++. .+.+|+....++.+|.+-|+++|++
T Consensus 95 Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~dl~~I~~-- 161 (385)
T PRK08574 95 VVLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVIDVPEVAK-- 161 (385)
T ss_pred EEEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecCHHHHHH--
Confidence 6778889988776652 21 22444443 3578888888651 1567777777888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+.+|++|+..
T Consensus 162 ------------------la~~~gi-------~livD~t~a~~ 179 (385)
T PRK08574 162 ------------------AAKELGA-------ILVVDNTFATP 179 (385)
T ss_pred ------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999654
No 137
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.88 E-value=2.2e-06 Score=95.53 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+.++++|+.+|.+.. ...++|+|++++...++.+. . .+| ..|++++-++...
T Consensus 67 ~lr~~ia~~~~~~~~---------~~I~~t~G~~~~i~~~~~~~----~------~~g---------d~vlv~~P~y~~~ 118 (356)
T PRK04870 67 ALKAALRAAMGVPAG---------ADVLLGNGSDELIQLLALAC----A------KPG---------ATVLAPEPGFVMY 118 (356)
T ss_pred HHHHHHHHHhCcCCC---------CcEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEECCCCHHHH
Confidence 456677888887542 14788888888875554321 1 122 2366677777777
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++.+.+.+++.++.++++.+|+++|++++.... +.+|+.+...+.+|.+-+.+++.+
T Consensus 119 ~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~---------------- 177 (356)
T PRK04870 119 RMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGNLFDDADVER---------------- 177 (356)
T ss_pred HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCCCCCHHHHHH----------------
Confidence 77775545588899998888999999999986431 456666777899999999888887
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++..+. |+++|.+|..+
T Consensus 178 ----i~~~~~~-------~ii~De~y~~~ 195 (356)
T PRK04870 178 ----IIEAAPG-------LVVVDEAYQPF 195 (356)
T ss_pred ----HHHHCCC-------EEEEECCchhh
Confidence 7766577 89999999754
No 138
>PLN02452 phosphoserine transaminase
Probab=98.87 E-value=3.3e-07 Score=104.13 Aligned_cols=333 Identities=13% Similarity=0.057 Sum_probs=200.2
Q ss_pred ceeEEccCCCC-hHHHHHHHHHHHHhccCc------cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC
Q psy11047 193 YMHAYFPALNS-YPSLLGDMLSDAINCLGF------TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT 265 (943)
Q Consensus 193 rf~g~~~~~~s-~~silgd~L~~alN~n~~------~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs 265 (943)
|-+-|-+++.. ++.++..+....+|-.+. ..--+|...++-.++.+.|.+|++.|+++ .-..++.
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y--------~v~~l~G 78 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY--------EVLFLQG 78 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEeC
Confidence 44556666654 567888887777664421 12236777888889999999999998652 2345667
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH---HHHHHHHCCccEEEEecCC--CCCcCHHH
Q psy11047 266 TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS---VEKAGLIGLVNMRYIESDD--KLSLRGDK 340 (943)
Q Consensus 266 GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS---v~KAa~LG~~~v~~Vp~D~--~grmD~da 340 (943)
|||.+.=.+++. +++ +| +-+.|++ ..+++ .+.|..+|...+.....+. ....++++
T Consensus 79 sgt~~~ea~~~n----l~~------~~--------~~~l~~~-~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 139 (365)
T PLN02452 79 GASTQFAAIPLN----LCK------PG--------DKADFVV-TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSE 139 (365)
T ss_pred ccHHHHHHHHHh----cCC------CC--------CeEEEEE-CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHH
Confidence 777776444332 110 11 2234443 46666 3334467764443322111 11456665
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccc-cccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLV-VDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 419 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGa-IDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA 419 (943)
+ +.+. .+-+|..|+..|.+|. +.|+.++++ + .+-||++
T Consensus 140 ~----~~~~----~~~~v~~~hnETstGv~~~~~~~i~~--------------------------~-------~lvVDa~ 178 (365)
T PLN02452 140 W----ELTP----DAKFVHICANETIHGVEFKDYPDVGN--------------------------V-------PLVADMS 178 (365)
T ss_pred c----CCCC----CCcEEEECCCCCCCcEecCcccccCC--------------------------C-------eEEEECC
Confidence 4 2221 2568999999999999 688877643 3 5789998
Q ss_pred hcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC-------c
Q psy11047 420 VLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN-------S 492 (943)
Q Consensus 420 ~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~-------~ 492 (943)
.... ...| ... ..+-+..+.||.++... +
T Consensus 179 Ss~g-~~pi---------------------------------dv~----------~~~v~~~saqK~lGP~Gl~~v~vr~ 214 (365)
T PLN02452 179 SNFL-SKPV---------------------------------DVS----------KYGVIYAGAQKNVGPSGVTIVIIRK 214 (365)
T ss_pred cccc-Cccc---------------------------------CHH----------HcCEEEEecccccCCCCeEEEEEcH
Confidence 7654 2111 011 11223369999998211 1
Q ss_pred chhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 493 GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 493 ~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
..+.+.-...+. +.+|..+... -.+|.|....++.++.+.++++.+. .|+
T Consensus 215 ~~l~~~~~~~~~------------~~~~~~~~~~----~s~~~TP~v~~i~~l~~aL~~l~~~--------------gGl 264 (365)
T PLN02452 215 DLIGNARPITPG------------MLDYKIHAEN----DSLYNTPPCFGIYMCGLVFEDLLAQ--------------GGL 264 (365)
T ss_pred HHHhhcccCCCc------------hhhHHHHHhc----CCccCChhHHHHHHHHHHHHHHHHc--------------cCH
Confidence 111111011111 1222211000 0234477888888999999886430 145
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEe-cC---CCccEEEEEecCCChHHHHHHHH
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIP-AA---RHLGMVVIRLLGENILTEKLLKR 648 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl-~~---~~l~iV~Fr~~g~n~l~~~Ll~~ 648 (943)
+.+.++ +.++++++.+.|.+.++|... .+ +...+|+|++++.+ +..++++.
T Consensus 265 ~~~~~r------------------------~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~-~~~~f~~~ 319 (365)
T PLN02452 265 KAMEKR------------------------NIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE-LEAEFVKE 319 (365)
T ss_pred HHHHHH------------------------HHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch-hHHHHHHH
Confidence 554443 678999999999998887222 11 23458999998764 78899999
Q ss_pred HhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 649 LNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 649 L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.++|.+.+.....-+ + +|+++...++.++|+.+++.|++..++
T Consensus 320 ~~~~g~~~~~G~r~~g-g-~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 320 AAKAGMVQLKGHRSVG-G-MRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred HHHCCCcccCCccccC-c-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 9999976544322222 2 999999999999999999999987543
No 139
>PRK07777 aminotransferase; Validated
Probab=98.87 E-value=1.6e-06 Score=97.93 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=100.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|...+...++...+.+|+.+.+|++... ....++|+|||+|+..++.+- . .+|
T Consensus 56 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~~i~~t~G~~~al~~~~~~~----~------~~g--------- 109 (387)
T PRK07777 56 QYPPGPGIPELRAAIAAQRRRRYGLEYDP-------DTEVLVTVGATEAIAAAVLGL----V------EPG--------- 109 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCCcHHHHHHHHHHh----c------CCC---------
Confidence 34444556778888888888888875320 024789999999987665421 1 122
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecCCC---CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---cHHH
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK---LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD---SYCC 375 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~---grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID---pL~e 375 (943)
-.|++..-.|.+...++.+-+..++.++.+++ +.+|+++|++.+... +.+|+.+...+.+|.+- ++++
T Consensus 110 d~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~ 183 (387)
T PRK07777 110 DEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAAELAA 183 (387)
T ss_pred CEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHHHHHH
Confidence 23555666777776666543447778887654 569999999988643 45566666667788764 4778
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ ++.+|.+|+..
T Consensus 184 l~~--------------------~~~~~~~-------~li~De~y~~~ 204 (387)
T PRK07777 184 IAE--------------------LAVEHDL-------LVITDEVYEHL 204 (387)
T ss_pred HHH--------------------HHHhcCc-------EEEEeccchhc
Confidence 888 9999999 99999999765
No 140
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.86 E-value=1.6e-06 Score=100.09 Aligned_cols=142 Identities=6% Similarity=-0.062 Sum_probs=99.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|.......++...+.+++.+-.|++-. ....++|+|+|+|+.+++.+- . .+|
T Consensus 89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~--------~~~v~it~G~~~al~l~~~~l----~------~~G--------- 141 (430)
T PLN00145 89 SYSTCVGLLPARRAIAEYLSRDLPYELS--------TDDIYLTAGCAQAIEIIMSVL----A------QPG--------- 141 (430)
T ss_pred CCCCCccCHHHHHHHHHHHhhccCCCCC--------hhhEEEeCCHHHHHHHHHHHh----c------CCC---------
Confidence 3444445567777777777666555422 136899999999987766542 1 122
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
..|+++.-++.....++.+-+.+++.+++ ++++.+|+++|++.++.. +.+++.+..++-+|.+-| +++|
T Consensus 142 d~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~P~NPtG~v~~~~~l~~i 215 (430)
T PLN00145 142 ANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADEN------TVAMVIINPNNPCGSVYSYEHLAKI 215 (430)
T ss_pred CEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcC------ceEEEEeCCCCCCCCCCCHHHHHHH
Confidence 23566666666555566543447777765 346789999999887654 566777778899999987 6677
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++||+ |+++|.+|+.+
T Consensus 216 ~~--------------------~a~~~~i-------~ii~De~Y~~~ 235 (430)
T PLN00145 216 AE--------------------TARKLGI-------LVIADEVYDHL 235 (430)
T ss_pred HH--------------------HHHHcCC-------EEEEeccchhh
Confidence 77 8999999 99999999765
No 141
>PLN02656 tyrosine transaminase
Probab=98.85 E-value=3.2e-06 Score=96.70 Aligned_cols=158 Identities=7% Similarity=-0.034 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+-+.+..++..+ ...|.......++...+.+|+.+..|++-. ....++|+|+|++...++.+. .
T Consensus 51 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~l----~- 117 (409)
T PLN02656 51 HVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLS--------LDDVFITSGCTQAIDVALSML----A- 117 (409)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC--------cccEEEeCChHHHHHHHHHHH----h-
Confidence 34444455544433 233444445567777788888877665422 136889999999987666542 1
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| -.|++++-+|.....++.+-+.+++.++++ +.+.+|+++|++.++.. +.+++.+.
T Consensus 118 -----~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~ 177 (409)
T PLN02656 118 -----RPG---------ANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIIN 177 (409)
T ss_pred -----CCC---------CeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEEC
Confidence 122 236667777776666665434478888874 34689999999887643 45677777
Q ss_pred CCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.++.+|.+ +++++|.+ +|++||+ |+++|.+|+.+
T Consensus 178 P~NPtG~~~s~~~~~~i~~--------------------~a~~~~~-------~ii~De~y~~~ 214 (409)
T PLN02656 178 PGNPCGNVYSYQHLKKIAE--------------------TAEKLKI-------LVIADEVYGHL 214 (409)
T ss_pred CCCCCCCCCCHHHHHHHHH--------------------HHHHcCC-------EEEEehhhhhc
Confidence 88899988 55788888 9999999 99999999866
No 142
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=98.85 E-value=1.6e-06 Score=98.29 Aligned_cols=136 Identities=11% Similarity=0.031 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...++|+ .|++++|.+ ..+|+++||+||..||.+||..... ..|... ..+-++.
T Consensus 82 ~~~~~~l~~----~l~~~~~~~------------~~~~~~SGs~A~e~al~~a~~~~~~-----~~g~~~---~~~~vi~ 137 (401)
T PRK00854 82 NDQLAPLYE----ELAALTGSH------------KVLPMNSGAEAVETAIKAVRKWGYE-----VKGVPE---GQAEIIV 137 (401)
T ss_pred CHHHHHHHH----HHHhhCCCC------------EEEEeCCcHHHHHHHHHHHHHHHHh-----ccCCCC---CCceEEE
Confidence 344455555 456666653 4789999999999999999864211 012110 0123566
Q ss_pred ecCCCchHHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-
Q psy11047 306 CSDQAHSSVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS- 372 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp- 372 (943)
++..-|-+..-+..++. ..+..++- .|.++|++.|.+. +.+|+.......+|.+-|
T Consensus 138 ~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~ 206 (401)
T PRK00854 138 CADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPP 206 (401)
T ss_pred ECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCC
Confidence 66666766543332221 12333332 3789999888642 567777777777888766
Q ss_pred ---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++.+|.++.|.
T Consensus 207 ~~~l~~l~~--------------------l~~~~gi-------~lI~DEv~~g~ 233 (401)
T PRK00854 207 AGYFTRVRE--------------------LCTANNV-------TLILDEIQTGL 233 (401)
T ss_pred HHHHHHHHH--------------------HHHHcCC-------EEEEechhhCC
Confidence 899999 9999999 99999999865
No 143
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.85 E-value=3.8e-06 Score=96.06 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=114.0
Q ss_pred CCCceeEEccCCCC------hHHHHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE
Q psy11047 190 QSPYMHAYFPALNS------YPSLLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV 262 (943)
Q Consensus 190 ~sPrf~g~~~~~~s------~~silgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv 262 (943)
.++.+..+-.+.+. ++..+.+.+...++... ..|.......++-..+.+|+.+.++.+...- ..-+....+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~--~~~~~~~i~ 108 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLK--STIKKDNVV 108 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc--CCCChhhEE
Confidence 34455544444332 45566666666665432 2333222456777777777776554110000 000113689
Q ss_pred EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHH
Q psy11047 263 LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDK 340 (943)
Q Consensus 263 fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~da 340 (943)
+|+|+++++..++.+.. .+| -.|+++.-+|.....++...+..+..++++ +++.+|+++
T Consensus 109 it~G~~~al~~~~~~~~----------~~g---------d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~ 169 (412)
T PTZ00433 109 LCSGVSHAILMALTALC----------DEG---------DNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDE 169 (412)
T ss_pred EeCChHHHHHHHHHHhc----------CCC---------CEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHH
Confidence 99999999877765421 122 235666667777777775434578888875 357899999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
|++.+... +.+|+.+...+-+|.+-+ +++|.+ +|++||+ |+++|
T Consensus 170 l~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~D 216 (412)
T PTZ00433 170 IRRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDIIR--------------------LCEELRL-------PLISD 216 (412)
T ss_pred HHHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHHH--------------------HHHHcCC-------eEEEe
Confidence 99887653 456667777788997644 667777 8999999 99999
Q ss_pred hhhcCC
Q psy11047 418 ALVLGD 423 (943)
Q Consensus 418 AA~GG~ 423 (943)
.+|..+
T Consensus 217 e~y~~~ 222 (412)
T PTZ00433 217 EIYAGM 222 (412)
T ss_pred cccccc
Confidence 999865
No 144
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.85 E-value=5.1e-07 Score=100.01 Aligned_cols=314 Identities=15% Similarity=0.103 Sum_probs=180.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc-EEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG-GVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEIN 299 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~-GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~ 299 (943)
..|..+....+++..+.+|+.+--|++.. .. .+++++|+.+++.++..... . .
T Consensus 38 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~---------~~~~i~~~~G~~~~~~~~~~~~~--~------~--------- 91 (363)
T PF00155_consen 38 LGYPPPQGYPELREAIADFLGRRYGVPVD---------PEANILVTSGAQAALFLLLRLLK--I------N--------- 91 (363)
T ss_dssp TSSTCTTHHHHHHHHHHHHHHHHHTHHTT---------GGEGEEEESHHHHHHHHHHHHHH--S------S---------
T ss_pred ccCCCchhhHHHHHHHHHHhhhccCcccc---------cceEEEEecccccchhhhhhccc--c------c---------
Confidence 34555556788888888888866565543 23 45666666666555543321 0 1
Q ss_pred CceEEEecCCCchHHHHHHHHCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HH
Q psy11047 300 SRLVAYCSDQAHSSVEKAGLIGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YC 374 (943)
Q Consensus 300 ~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~ 374 (943)
+.-.|++.+-.|.....++..-+..++.++. ++++.+|+++|++.+++...++..+.+++.+-..+.+|.+-+ +.
T Consensus 92 ~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~ 171 (363)
T PF00155_consen 92 PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELR 171 (363)
T ss_dssp TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHH
T ss_pred ccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccccccccccccc
Confidence 1234777888999999988643335887874 378999999999999987666533566777777778998755 44
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|.+ +|++||+ |+-+|.+|+.+ .+. .. .
T Consensus 172 ~l~~--------------------~~~~~~~-------~ii~De~y~~~-~~~---~~-------------~-------- 199 (363)
T PF00155_consen 172 ELAE--------------------LAREYNI-------IIIVDEAYSDL-IFG---DP-------------D-------- 199 (363)
T ss_dssp HHHH--------------------HHHHTTS-------EEEEEETTTTG-BSS---SS-------------H--------
T ss_pred chhh--------------------hhccccc-------ceeeeeceecc-ccC---CC-------------c--------
Confidence 5555 6999999 99999999876 330 00 0
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccC---cchhhhhcccCccccccCCCCcccccCccccCCCCCcchH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKN---SGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRAL 531 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~---~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrAL 531 (943)
.. .....+..-.. --+.-++.|.++... +... ..+..+..-. .... .-++ .++
T Consensus 200 -------~~-~~~~~~~~~~~-vi~~~S~SK~~g~~GlRvG~i~-----~~~~~~~~l~-----~~~~--~~~~---~~~ 255 (363)
T PF00155_consen 200 -------FG-PIRSLLDEDDN-VIVVGSLSKSFGLPGLRVGYIV-----APPELIERLR-----RFQR--SGLS---SSP 255 (363)
T ss_dssp -------TH-HHHGHHTTTST-EEEEEESTTTTTSGGGTEEEEE-----EEHHHHHHHH-----HHHH--HTTS---SHH
T ss_pred -------cC-ccccccccccc-ceeeeecccccccccccccccc-----chhhhhhhhh-----hccc--cccc---cch
Confidence 00 00111111111 367778889776322 2111 0011110000 0000 0000 222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGL-QKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKF 610 (943)
Q Consensus 532 klW~tLr~~G~~Gl-~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l 610 (943)
...+....+...+. .+.+++..+ . -.+.++++
T Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~~-------------------~----------------------------l~~~~~~l 288 (363)
T PF00155_consen 256 MQAAAAAALSDPELVEKWLEELRE-------------------R----------------------------LRENRDLL 288 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------H----------------------------HHHHHHHH
T ss_pred hhHHHHHhhhcccccccccccchh-------------------h----------------------------HHHHHHHH
Confidence 22333333333331 123333211 0 13445667
Q ss_pred HHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhcc-CcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 611 EALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK-GRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 611 ~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~-G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
.+.|.+. ++.+..++ .++++|.....+ ....+.+.|.++ |.. +.+. ....++++|+++ ...++++++++++.|
T Consensus 289 ~~~L~~~-~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~L~~~~gi~-v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 289 REALEEI-GITVLPPE-AGFFLWVRLDPN-DAEELAQELLEEYGIL-VRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHHHT-TSEEEHHS-BSSEEEEEESHH-HHHHHHHHHHHHHTEE-EEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred HHHHHHh-hhheeecc-CccEEEEEcccc-hHHHHHHHHHHhCCEE-EEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 7777666 88887655 777776543322 357888888887 754 4442 222377999977 777899999998765
No 145
>PRK08912 hypothetical protein; Provisional
Probab=98.85 E-value=4e-06 Score=94.63 Aligned_cols=137 Identities=13% Similarity=-0.022 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...++...+.+|+.+..|++-.. ....++|+|+|+++..++.+- . .+| ..|+++
T Consensus 64 G~~~lr~~ia~~~~~~~g~~~~~-------~~~i~~t~G~~~al~~~~~~~----~------~~g---------d~Vlv~ 117 (387)
T PRK08912 64 GLPELRQAVAAHYARFQGLDLDP-------ETEVMVTSGATEALAAALLAL----V------EPG---------DEVVLF 117 (387)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCC-------cccEEEeCCcHHHHHHHHHHh----c------CCC---------CEEEEe
Confidence 35677778888888877874321 015789999999985554431 1 122 246677
Q ss_pred CCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
+-+|.....++..-+.+++.+++++ ++.+|.++|++.+... +.+++.+...+.+|.+-+ +++|.+
T Consensus 118 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~~----- 186 (387)
T PRK08912 118 QPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLAE----- 186 (387)
T ss_pred CCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHHH-----
Confidence 7888888777754344788888864 6789999999988542 456677778889998866 666777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ |+.+|.+|+.+
T Consensus 187 ---------------~~~~~~~-------~ii~De~y~~~ 204 (387)
T PRK08912 187 ---------------FCQRHDA-------VAICDEVWEHV 204 (387)
T ss_pred ---------------HHHHCCe-------EEEEhhhhhhc
Confidence 9999999 99999999755
No 146
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=98.85 E-value=2.4e-06 Score=95.52 Aligned_cols=136 Identities=11% Similarity=-0.064 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
...++.+++++++|.+ ..+++.|||+||..++.++|..... ++. .++-+++.+..-|
T Consensus 70 ~~~~l~~~la~~~g~~------------~~~~~~sg~~a~~~a~~~~~~~~~~------~~~-----~~~~vi~~~~~yh 126 (379)
T TIGR00707 70 PQEELAEKLVEHSGAD------------RVFFCNSGAEANEAALKLARKYTGD------KGK-----EKKKIIAFENSFH 126 (379)
T ss_pred HHHHHHHHHHhhCCCC------------EEEEeCCcHHHHHHHHHHHHHHhhc------cCC-----CCCeEEEECCCcC
Confidence 3445566778888864 3689999999999999887643210 010 0234555566667
Q ss_pred hHHHHHHHHCCccE---EEEecCCCCCc----CHHHHHHHHHHhhccCCCcEEEEEecCCCccccc----ccHHHhhhhc
Q psy11047 312 SSVEKAGLIGLVNM---RYIESDDKLSL----RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV----DSYCCLGTAM 380 (943)
Q Consensus 312 ySv~KAa~LG~~~v---~~Vp~D~~grm----D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI----DpL~eIa~~~ 380 (943)
.+..-+...+.... ...+...+... |+++|++.+... +.+|+.+.....+|.+ +++++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~-- 198 (379)
T TIGR00707 127 GRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALRE-- 198 (379)
T ss_pred CccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHH--
Confidence 55555543332111 11222222222 799999988653 4455555544444543 23788888
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.+|.++
T Consensus 199 ------------------l~~~~~~-------~~i~De~~~~~ 216 (379)
T TIGR00707 199 ------------------ICKDKDA-------LLIFDEVQTGI 216 (379)
T ss_pred ------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999765
No 147
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.84 E-value=9.8e-07 Score=107.30 Aligned_cols=131 Identities=13% Similarity=0.005 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHH
Q psy11047 237 MNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEK 316 (943)
Q Consensus 237 i~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~K 316 (943)
-+..|++||.+.. -.+|.|+|.+|..++.++- .+| -.|++...+|-|+..
T Consensus 180 q~~AA~~fgAd~t-----------yFlvNGTS~gn~a~i~a~~----------~~G---------d~VLvdRN~HKSv~h 229 (720)
T PRK13578 180 QKHAAKVFNADKT-----------YFVLNGTSASNKVVTNALL----------TPG---------DLVLFDRNNHKSNHH 229 (720)
T ss_pred HHHHHHHhCCCce-----------EEEeCChhHHHHHHHHHhc----------CCC---------CEEEeecccHHHHHH
Confidence 3456899999865 4688999999988777542 122 357889999999999
Q ss_pred H-HHHCCccEEEEecC--C---CCCcCH-----HHHHHHHHHh-hc--cCCCc-EEEEEecCCCcccccccHHHhhhhcc
Q psy11047 317 A-GLIGLVNMRYIESD--D---KLSLRG-----DKLIEAIERD-KK--KHLIP-FFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 317 A-a~LG~~~v~~Vp~D--~---~grmD~-----daLe~aI~~d-~~--kG~~P-~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
+ +.|.+...+++++. . -|-++. +.++++|++. .. +...| .+++.|.. |.-|.+-++++|++
T Consensus 230 gaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~--- 305 (720)
T PRK13578 230 GALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVD--- 305 (720)
T ss_pred HHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHH---
Confidence 6 56655566666442 2 234554 4489999876 22 22345 56666665 55688889999999
Q ss_pred ccccccccccccCchHHH-HHHcCCCCCccchhhhHHhhhcCCCcc
Q psy11047 382 VKGLGFYKMKLQTNFPNF-ILSYFPKFQSVRLAQKFEALVLGDPRF 426 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~i-ar~~Gl~~~~l~lwLHVDAA~GG~~af 426 (943)
+ ++.++. +|||-|||+...|
T Consensus 306 -----------------~~~h~~~~--------llvDEAhgah~~F 326 (720)
T PRK13578 306 -----------------KIGHLCDY--------ILFDSAWVGYEQF 326 (720)
T ss_pred -----------------HhhccCCc--------EEEeCcchhhhcc
Confidence 6 566664 9999999998444
No 148
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.83 E-value=6.3e-06 Score=92.10 Aligned_cols=127 Identities=11% Similarity=-0.030 Sum_probs=90.5
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
.++.+|++++.+.+ ..++|+|+++++..++.+. + .+| + .|++++-+.....
T Consensus 64 lr~~ia~~~~~~~~----------~i~it~G~~~~l~~~~~~l----~------~~g--------d-~Vlv~~p~y~~~~ 114 (351)
T PRK14807 64 LREELARYCSVVPT----------NIFVGNGSDEIIHLIMLAF----I------NKG--------D-VVIYPHPSFAMYS 114 (351)
T ss_pred HHHHHHHHhCCCcc----------cEEEecCHHHHHHHHHHHh----c------CCC--------C-EEEEeCCChHHHH
Confidence 44556666777543 5789999999876655431 1 122 2 2455555555455
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
.++...+.+++.++.++++.+|++++++++... .+.+|+.+...+-+|.+-+.+++.+
T Consensus 115 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~----------------- 172 (351)
T PRK14807 115 VYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIK----------------- 172 (351)
T ss_pred HHHHHcCCeEEEeecCCCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHH-----------------
Confidence 555544458889999888899999999988642 1456666778889999999999999
Q ss_pred hHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 396 FPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 396 fR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++++++. ++-+|.+|+.+
T Consensus 173 ---l~~~~~~-------~~ivDe~y~~~ 190 (351)
T PRK14807 173 ---IIEKSRG-------IVVVDEAYFEF 190 (351)
T ss_pred ---HHHhCCC-------EEEEeCcchhh
Confidence 8988887 88899999654
No 149
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.83 E-value=1.6e-06 Score=99.69 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=88.2
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|....+|. .+|++.|.+ ..+++++|++|+..++.+. + .+| +
T Consensus 55 ~R~~~p~~~~Le~----~lA~l~g~~------------~~v~~~sG~~Ai~~~l~al----l------~pG--------D 100 (405)
T PRK08776 55 TRSGNPTRDLLGE----ALAELEGGA------------GGVITATGMGAINLVLNAL----L------QPG--------D 100 (405)
T ss_pred cCCCChHHHHHHH----HHHHHhCCC------------ceEEEcCHHHHHHHHHHHH----h------CCC--------C
Confidence 3445566677774 567888753 3588999998876555432 1 123 2
Q ss_pred eEEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.|+++...+...... +..+...+..++. .|.++|+++++.+ +.+|+.+.-++.+|.+.++++|.
T Consensus 101 -~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~ 168 (405)
T PRK08776 101 -TLVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVI 168 (405)
T ss_pred -EEEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHH
Confidence 355566666553322 2223445666654 3788998888643 56777777888899999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ ++-+|.+|+..
T Consensus 169 ~--------------------la~~~gi-------~vIvD~a~a~~ 187 (405)
T PRK08776 169 E--------------------AAHKVGA-------LTVVDNTFLSP 187 (405)
T ss_pred H--------------------HHHHcCC-------EEEEECCCccc
Confidence 9 9999999 99999999754
No 150
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.82 E-value=5.5e-07 Score=102.55 Aligned_cols=126 Identities=11% Similarity=0.055 Sum_probs=89.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|..+ |++.|.+ ..++|+||++|+..++.+- + .+| -.
T Consensus 47 ~gnPt~~~lE~~l----A~l~g~~------------~~~~~~sG~~Ai~~al~al----l------~~G---------D~ 91 (377)
T TIGR01324 47 RGTLTHFALQDAM----CELEGGA------------GCYLYPSGLAAVTNSILAF----V------KAG---------DH 91 (377)
T ss_pred CCCccHHHHHHHH----HHHhCCC------------cEEEECcHHHHHHHHHHHh----c------CCC---------CE
Confidence 3458888888865 6777753 4689999999998887642 1 122 23
Q ss_pred EEecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|++++..+.+....+ .+| .++..++.+ +.++++++|+++ +.+|+...-++.+|.+.|+++|++
T Consensus 92 Vl~~~~~y~~t~~~~~~~~~~~g-i~v~~~d~~-----~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~ 159 (377)
T TIGR01324 92 VLMVDSAYEPTRYFCDIVLKRMG-VDITYYDPL-----IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAK 159 (377)
T ss_pred EEEcCCCcHHHHHHHHHHHHhcC-cEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHH
Confidence 666776776554432 123 355555432 236777777643 678888888889999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+-+|++|+..
T Consensus 160 --------------------la~~~g~-------~livD~t~a~g 177 (377)
T TIGR01324 160 --------------------AARNPGI-------VIMIDNTWAAG 177 (377)
T ss_pred --------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999765
No 151
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.82 E-value=7.7e-07 Score=103.14 Aligned_cols=128 Identities=8% Similarity=-0.041 Sum_probs=92.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|.. +|++.|.+ ..++|+||+.|+..++.+. + .+| -
T Consensus 60 r~~~p~~~~Le~~----lA~leg~~------------~al~~~sG~~Ai~~al~~l----l------~~G---------D 104 (431)
T PRK08248 60 RIMNPTTDVFEKR----IAALEGGI------------GALAVSSGQAAITYSILNI----A------SAG---------D 104 (431)
T ss_pred CCCCchHHHHHHH----HHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------C
Confidence 3456777888875 57888753 4789999999998887642 1 122 2
Q ss_pred EEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|...... +..-+.+++.++. .|+++++++|+++ +.+|+.+..++.+|.+-|+++|++
T Consensus 105 ~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~-----~d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~ 173 (431)
T PRK08248 105 EIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP-----SDPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAA 173 (431)
T ss_pred EEEEccCchhhHHHHHHHHHHhCCEEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH
Confidence 366777777554332 2222347777765 3789999888653 556777777888999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++++..
T Consensus 174 --------------------la~~~gi-------~vIvD~t~a~~ 191 (431)
T PRK08248 174 --------------------IAHEHGI-------PLIVDNTFASP 191 (431)
T ss_pred --------------------HHHHcCC-------EEEEeCCCCcc
Confidence 9999999 99999998743
No 152
>PLN00175 aminotransferase family protein; Provisional
Probab=98.82 E-value=3.6e-06 Score=96.62 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~ 286 (943)
.+.+.+..++......|.......+|...+.+|+.+..|++-.. ....++|+|+|+|+..++.+- +
T Consensus 71 ~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~-------~~~I~vt~G~~~al~~~~~~l----~--- 136 (413)
T PLN00175 71 FVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP-------EKEVTVTSGCTEAIAATILGL----I--- 136 (413)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCCEEEeCCHHHHHHHHHHHh----C---
Confidence 34555555554432344444456788888889998888865320 014789999999976655431 1
Q ss_pred cccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 287 ~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.|| -.|++.+-.+.....++..-+.+++.|+.++ ++.+|+++|++.+... +.+|+.+...+
T Consensus 137 ---~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~------~k~i~i~~p~N 198 (413)
T PLN00175 137 ---NPG---------DEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSK------TRAILINTPHN 198 (413)
T ss_pred ---CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcC------ceEEEecCCCC
Confidence 122 2355666677667666655445888998863 5789999999988643 45666677788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-+|.+-+ +++|.+ +|++||+ |+++|.+|...
T Consensus 199 PtG~~~s~~~l~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 232 (413)
T PLN00175 199 PTGKMFTREELELIAS--------------------LCKENDV-------LAFTDEVYDKL 232 (413)
T ss_pred CCCcCCCHHHHHHHHH--------------------HHHHcCc-------EEEEecccCcc
Confidence 8998855 667777 9999999 99999999765
No 153
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.81 E-value=8.5e-07 Score=101.67 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=91.0
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|.. +|+++|.+ ..+++++|++|+..++.+. + .+| -.
T Consensus 61 ~~~p~~~~le~~----lA~l~g~~------------~~i~~ssG~~Ai~~~l~al----l------~~G---------D~ 105 (398)
T PRK08249 61 NTNPTVQAFEEK----VRILEGAE------------AATAFSTGMAAISNTLYTF----L------KPG---------DR 105 (398)
T ss_pred CCChHHHHHHHH----HHHHhCCC------------eEEEeCChHHHHHHHHHHh----c------CCC---------CE
Confidence 556778877764 57888864 3578888898887776542 1 122 24
Q ss_pred EEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..... ..-+.++..++. .|+++++++|+++ +.+|....-++.+|.+-|+++|.+
T Consensus 106 Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~- 173 (398)
T PRK08249 106 VVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAA- 173 (398)
T ss_pred EEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHH-
Confidence 777888887754433 122234554442 5899999988653 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|++|+..
T Consensus 174 -------------------la~~~gi-------~livD~t~a~~ 191 (398)
T PRK08249 174 -------------------AAKKVGA-------LVVVDNTFATP 191 (398)
T ss_pred -------------------HHHHcCC-------EEEEECCcCcc
Confidence 9999999 99999999854
No 154
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.81 E-value=5.4e-06 Score=94.44 Aligned_cols=112 Identities=12% Similarity=-0.020 Sum_probs=82.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD 337 (943)
..++|+|||+|+..++.+.. .+| -.|+++.-++.....++..-+..++.++.+ +++.+|
T Consensus 98 ~ii~t~G~t~al~~~~~~l~----------~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 158 (403)
T TIGR01265 98 DVVLTSGCSQAIEICIEALA----------NPG---------ANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEID 158 (403)
T ss_pred HEEEecChHHHHHHHHHHhC----------CCC---------CEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccC
Confidence 57899999999887766521 122 235666777776666664333467777663 467899
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
++++++.+..+ +.+++.+..++.+|.+-+ +++|.+ +|+++|+ |+
T Consensus 159 ~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~--------------------~a~~~~~-------~i 205 (403)
T TIGR01265 159 LDGLEALADEK------TVAIVVINPSNPCGSVFSRDHLQKIAE--------------------VARKLGI-------PI 205 (403)
T ss_pred HHHHHHHhCcC------ccEEEEecCCCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EE
Confidence 99999887643 456667777888998854 778888 9999999 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
++|.+|+.+
T Consensus 206 i~De~y~~~ 214 (403)
T TIGR01265 206 IADEIYGHM 214 (403)
T ss_pred EEEcccccc
Confidence 999999866
No 155
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=98.80 E-value=2.6e-06 Score=96.58 Aligned_cols=127 Identities=13% Similarity=-0.005 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++++++.+|.+.+ ..++|+|+++++..++.+. . .+| + .|++++-++...
T Consensus 90 ~lr~~ia~~~~~~~~----------~I~~t~Ga~~~i~~~~~~~----~------~~g--------d-~Vlv~~P~y~~y 140 (380)
T PLN03026 90 RLRAALAEDSGLESE----------NILVGCGADELIDLLMRCV----L------DPG--------D-KIIDCPPTFGMY 140 (380)
T ss_pred HHHHHHHHHhCcChh----------hEEEcCCHHHHHHHHHHHh----c------CCC--------C-EEEEcCCChHHH
Confidence 466778888887654 5789999999986665431 1 122 2 355555554444
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+..-+.+++.++.++++.+|+++|++++... .+.+|+.+...+.+|.+-|.+++.+
T Consensus 141 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~---------------- 199 (380)
T PLN03026 141 VFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLK---------------- 199 (380)
T ss_pred HHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 4455444457888888878899999999988422 1557777788999999999999998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. + |+.+|.||..+
T Consensus 200 ----l~~~~-~-------~vi~DeaY~~~ 216 (380)
T PLN03026 200 ----ILELP-I-------LVVLDEAYIEF 216 (380)
T ss_pred ----HHhcC-C-------EEEEECcchhh
Confidence 88653 7 99999999754
No 156
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.80 E-value=7e-07 Score=102.48 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=96.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|..+ |+|-|.. ..+++++|+.|+..++++- + .+| -
T Consensus 58 R~~nPt~~~le~~l----a~LEg~~------------~a~~~~SGmaAi~~~~~~l----l------~~G---------D 102 (395)
T PRK08114 58 RRGTLTHFSLQEAM----CELEGGA------------GCALYPCGAAAVANAILAF----V------EQG---------D 102 (395)
T ss_pred CCCChhHHHHHHHH----HHHhCCC------------eEEEEhHHHHHHHHHHHHH----c------CCC---------C
Confidence 34678899999865 5665543 4688888999988777642 1 122 2
Q ss_pred EEEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.+..+.+. + -+.++..++. .|.++++++|+.+ +.+|....-++.+|.+-||++|++
T Consensus 103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~------TrlV~~EtpsNp~~~v~DI~~Ia~ 171 (395)
T PRK08114 103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPN------TKVVFLESPGSITMEVHDVPAIVA 171 (395)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCC------ceEEEEECCCCCCCEeecHHHHHH
Confidence 47788889888777652 2 2346777764 3678899988754 678899999999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcC--CCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYF--PKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~G--l~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++| + .+.||++|+..
T Consensus 172 --------------------ia~~~g~g~-------~lvVDnT~a~p 191 (395)
T PRK08114 172 --------------------AVRSVNPDA-------VIMIDNTWAAG 191 (395)
T ss_pred --------------------HHHHhCCCC-------EEEEECCCccc
Confidence 999985 8 99999999765
No 157
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.80 E-value=5.5e-06 Score=94.02 Aligned_cols=140 Identities=14% Similarity=0.023 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...+++..+.+|+....|.+-. .....++|+|||+++..++.+. . .+| + .|++.
T Consensus 68 g~~~lr~~ia~~~~~~~~~~~~-------~~~~i~it~G~~~al~~~~~~~----~------~~g--------d-~vl~~ 121 (391)
T PRK07309 68 GLLELRQAAADFVKEKYNLDYA-------PENEILVTIGATEALSASLTAI----L------EPG--------D-KVLLP 121 (391)
T ss_pred CcHHHHHHHHHHHHHHhCCCCC-------CCCcEEEeCChHHHHHHHHHHh----c------CCC--------C-EEEEe
Confidence 3577888888888887776421 0125789999999987776542 1 122 2 35555
Q ss_pred CCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
.-++.....++..-+.+++.++.+++ +.+|+++|+++++.... .+.+++.+..++.+|.+-+ +++|.+
T Consensus 122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~---~~~~i~l~~P~NPtG~~~s~~~~~~l~~----- 193 (391)
T PRK07309 122 APAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD---KLKAVILNYPANPTGVTYSREQIKALAD----- 193 (391)
T ss_pred CCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCC---CeEEEEEECCCCCCCcCcCHHHHHHHHH-----
Confidence 66666666666543447888888654 57999999999875311 2556666777888898644 777777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++++|.+|+.+
T Consensus 194 ---------------~~~~~~~-------~ii~D~~y~~~ 211 (391)
T PRK07309 194 ---------------VLKKYDI-------FVISDEVYSEL 211 (391)
T ss_pred ---------------HHHHcCc-------EEEEEccccce
Confidence 9999999 99999999865
No 158
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.79 E-value=6.6e-07 Score=102.17 Aligned_cols=127 Identities=9% Similarity=0.044 Sum_probs=89.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|....+|+ .+|++.|.+. .+++++|+.|+..++. .++ +| -
T Consensus 50 r~~~p~~~~le~----~lA~l~g~~~------------~v~~~sG~~ai~~~l~-----~l~------~G---------d 93 (390)
T PRK08064 50 RSGNPTREALED----IIAELEGGTK------------GFAFASGMAAISTAFL-----LLS------KG---------D 93 (390)
T ss_pred CCCChhHHHHHH----HHHHHhCCCC------------eEEECCHHHHHHHHHH-----HhC------CC---------C
Confidence 345677887776 4578888753 4667777777654442 111 22 1
Q ss_pred EEEecCCCchHHHHH----HHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKA----GLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KA----a~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.+.... +..-+.+++.++.+ |+++++++++++ +.+|+.+..++.+|.+-|+++|.+
T Consensus 94 ~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------tklV~l~~p~NptG~~~dl~~I~~ 162 (390)
T PRK08064 94 HVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPN------TKLFYVETPSNPLLKVTDIRGVVK 162 (390)
T ss_pred EEEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCcEeccHHHHHH
Confidence 366677777654432 22223477778763 688888888653 568888889999999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||+||+.+
T Consensus 163 --------------------la~~~g~-------~vvvD~a~~~~ 180 (390)
T PRK08064 163 --------------------LAKAIGC-------LTFVDNTFLTP 180 (390)
T ss_pred --------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999998765
No 159
>PRK07550 hypothetical protein; Provisional
Probab=98.79 E-value=3.2e-06 Score=95.42 Aligned_cols=141 Identities=9% Similarity=-0.120 Sum_probs=97.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...+...+++..+.+++.+..|..-. ....++|+|+++|+..++.+.. .+| -
T Consensus 63 Y~~~~G~~~lr~~ia~~~~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~l~----------~~g---------d 115 (386)
T PRK07550 63 YGPVEGLPELREAYAAHYSRLYGAAIS--------PEQVHITSGCNQAFWAAMVTLA----------GAG---------D 115 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCC--------cceEEEecCcHHHHHHHHHHhc----------CCC---------C
Confidence 333345778888888888888776432 1367899999999766654421 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++++-++.....++...+.+++.++.++ .+.+|.++|++.++.. +.+|+.+..++-+|.+-+ +++|.
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~ 189 (386)
T PRK07550 116 EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELY 189 (386)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHH
Confidence 366666555444444444445888898863 4568999999988753 445555556777888755 67788
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ ++++|.+|+.+
T Consensus 190 ~--------------------~~~~~~~-------~iI~Dd~y~~~ 208 (386)
T PRK07550 190 D--------------------LARRHGI-------ALILDETYRDF 208 (386)
T ss_pred H--------------------HHHHcCe-------EEEEeccchhh
Confidence 7 9999999 99999999865
No 160
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.78 E-value=8.7e-07 Score=101.65 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....||..+ |++.|.. ..++++||++|+..++.+- + .+| -.|
T Consensus 59 ~npt~~~Le~~i----A~le~~~------------~~~~~~sG~~Ai~~~l~al----l------~~G---------D~V 103 (394)
T PRK09028 59 GTPTHFAFQAAI----VELEGGA------------GTALYPSGAAAISNALLSF----L------KAG---------DHL 103 (394)
T ss_pred CCchHHHHHHHH----HHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 356667777654 5555432 4689999999988777542 1 123 236
Q ss_pred EecCCCchHHHHHH--HH--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG--LI--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa--~L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++++..+.+....+ .+ -+.++..++.+ +.+.++++|+++ +.+|+.+.-++.+|.+.|+++|++
T Consensus 104 vv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~-- 170 (394)
T PRK09028 104 LMVDSCYEPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSR-- 170 (394)
T ss_pred EEECCCcHHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHH--
Confidence 66676776665533 12 12355555432 356777777543 678888889999999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+-||.+|+..
T Consensus 171 ------------------la~~~g~-------~lvvD~t~a~p 188 (394)
T PRK09028 171 ------------------IAHEHDI-------VVMLDNTWASP 188 (394)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999865
No 161
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.78 E-value=1.2e-06 Score=100.09 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|. ++|++.|.+ ..++|+||++|+..++.+- + .+| -.
T Consensus 49 ~~~pt~~~L~~----~lA~l~g~~------------~~i~~~sg~~Ai~~~l~~l----~------~~G---------D~ 93 (386)
T PRK08045 49 RGNPTRDVVQR----ALAELEGGA------------GAVLTNTGMSAIHLVTTVF----L------KPG---------DL 93 (386)
T ss_pred CCCccHHHHHH----HHHHHhCCC------------eEEEECCHHHHHHHHHHHH----c------CCC---------CE
Confidence 34566666665 567787742 4789999999887766531 1 122 24
Q ss_pred EEecCCCchHHHHHH-H---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|++++..|.+..... . .+...+..++ ..|.++++++++++ +.+|..+..++.+|.+-|+++|.+
T Consensus 94 Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~- 161 (386)
T PRK08045 94 LVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICH- 161 (386)
T ss_pred EEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHH-
Confidence 667777777544432 2 2444555553 36889999888653 567777888889999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+.+
T Consensus 162 -------------------ia~~~g~-------~vivDeay~~~ 179 (386)
T PRK08045 162 -------------------LAREAGA-------VSVVDNTFLSP 179 (386)
T ss_pred -------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999765
No 162
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.77 E-value=1e-06 Score=101.88 Aligned_cols=126 Identities=10% Similarity=0.004 Sum_probs=91.5
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....+|. .+|++.|.+ ..+++++|+.|+..++.+. + .+| -.|
T Consensus 61 ~~p~~~~le~----~lA~l~g~~------------~al~~~SG~~Ai~~al~al----l------~pG---------d~V 105 (427)
T PRK05994 61 TNPTNAVLEE----RVAALEGGT------------AALAVASGHAAQFLVFHTL----L------QPG---------DEF 105 (427)
T ss_pred CCccHHHHHH----HHHHHhCCC------------cEEEEcCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 3566777776 457787764 3689999999998777653 1 122 236
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..+.. ..-+..++.++++ |+++++++|+++ +.+|+...-++.+|.+-|+++|.+
T Consensus 106 Iv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~-- 172 (427)
T PRK05994 106 IAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAE-- 172 (427)
T ss_pred EEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHH--
Confidence 67777887654432 1123366677653 788999888653 567777788888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+++..
T Consensus 173 ------------------la~~~gi-------~livD~a~a~~ 190 (427)
T PRK05994 173 ------------------VAHRAGL-------PLIVDNTLASP 190 (427)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
No 163
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.77 E-value=6.7e-07 Score=101.68 Aligned_cols=125 Identities=9% Similarity=0.010 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+++++|.+ ..+++++|+.|+..++. .+ .+| -.|
T Consensus 45 ~~p~~~~le~----~la~l~g~~------------~~l~~~sG~~al~~~l~-----ll------~~G---------d~V 88 (378)
T TIGR01329 45 GNPTRTALES----LLAKLDKAD------------RAFAFSSGMAALDVITR-----LL------NNG---------DEI 88 (378)
T ss_pred CChHHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHH-----Hh------CCC---------CEE
Confidence 3455555555 668888874 35777888876543221 12 122 246
Q ss_pred EecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..+.. ...+.+++.++.+ |+++++++|+.+ +.+|+.+.-++.+|.+-|+++|++
T Consensus 89 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~-- 155 (378)
T TIGR01329 89 IAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISE-- 155 (378)
T ss_pred EEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHH--
Confidence 77788888766543 1223467777763 789999888643 668888888889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||++++..
T Consensus 156 ------------------la~~~g~-------~vivD~a~~~~ 173 (378)
T TIGR01329 156 ------------------MAHAQNA-------LVVVDNTMMSP 173 (378)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998654
No 164
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=98.77 E-value=9.5e-06 Score=91.81 Aligned_cols=132 Identities=8% Similarity=0.020 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|++ ...|+++||+||..|+..+|.+...+ .|+. ..++-++.+...-|-+.
T Consensus 77 ~~~~~l~~~~~~~------------~~~~~~SGs~A~e~al~~~~~~~~~~-----~~~~---~~~~~vl~~~~~~Hg~~ 136 (400)
T PTZ00125 77 LAEKYITDLFGYD------------KVLPMNSGAEAGETALKFARKWGYEV-----KGIP---ENQAKIIFCNGNFSGRT 136 (400)
T ss_pred HHHHHHHhCCCCC------------EEEEeCCcHHHHHHHHHHHHHHHHhc-----cCCC---CCCCeEEEECCCcCCcc
Confidence 3444556666653 36899999999999999998643211 1110 01234556666667666
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
..++.++.. .+..++. .|+++|++.++.. .+.+|+..-..+.+|.+-| +++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-----~~~~v~~ep~~~~~G~~~~~~~~l~~l~~ 206 (400)
T PTZ00125 137 IGACSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQDP-----NVAAFIVEPIQGEAGVIVPDDGYLKQVYE 206 (400)
T ss_pred HHHHhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCCC-----CeEEEEEcCccCCCCCccCCHHHHHHHHH
Confidence 555533221 1122222 3799999988621 2556665444566787766 899999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|.++.+.
T Consensus 207 --------------------l~~~~~~-------lli~Dev~~g~ 224 (400)
T PTZ00125 207 --------------------LCKKYNV-------LLIVDEIQTGL 224 (400)
T ss_pred --------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999764
No 165
>PLN02955 8-amino-7-oxononanoate synthase
Probab=98.76 E-value=8.4e-06 Score=95.47 Aligned_cols=331 Identities=10% Similarity=0.003 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHHHhccCccccCChh---HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPA---CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRT 280 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPa---ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~ 280 (943)
.|.+. +....++...+.....|+. .+.+..++=+.||+++|.++ .++.++|..||+-++.+--.
T Consensus 118 ~p~v~-~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~------------all~sSGy~AN~~~i~aL~~ 184 (476)
T PLN02955 118 HPTIS-NAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED------------CLVCPTGFAANMAAMVAIGS 184 (476)
T ss_pred CHHHH-HHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc------------EEEECChHHHHHHHHHHHhh
Confidence 44444 3334444555443333332 22233334456789999864 58899999999877654200
Q ss_pred HHHHhhcc-cCCCchhhhcCCceEEEecCCCchHHHHHHHHC----CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCc
Q psy11047 281 EAIRKYQQ-SHPELEHAEINSRLVAYCSDQAHSSVEKAGLIG----LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIP 355 (943)
Q Consensus 281 ~~l~~~~~-~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG----~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P 355 (943)
...-... ..+. .....+||+-...|.|+..++.+. ...+...+= -|+++|++.|+....+ .
T Consensus 185 -~~~~~~~~~~~~-----~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-----ND~~~Le~~L~~~~~~---~ 250 (476)
T PLN02955 185 -VASLLAASGKPL-----KNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-----CDMYHLNSLLSSCKMK---R 250 (476)
T ss_pred -cccccccccccc-----CCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-----CCHHHHHHHHHhCCCC---c
Confidence 0000000 0000 013456788889999999999764 344555543 3699999999775432 3
Q ss_pred EEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccc
Q psy11047 356 FFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLG 435 (943)
Q Consensus 356 ~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg 435 (943)
.+|+.----...|.+-|+.+|.+ +|++||. ++.||-|++.+ .+ |
T Consensus 251 ~~Vv~EgV~SmdGdiapL~eL~~--------------------L~~~~ga-------~LiVDEAH~~G-v~--------G 294 (476)
T PLN02955 251 KVVVTDSLFSMDGDFAPMEELSQ--------------------LRKKYGF-------LLVIDDAHGTF-VC--------G 294 (476)
T ss_pred eEEEEeCCCCCCCCcCCHHHHHH--------------------HHHHcCc-------EEEEcccccCc-ee--------c
Confidence 34443333455688999999999 9999999 99999999876 32 1
Q ss_pred eeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCC-CCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcc
Q psy11047 436 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGL-GRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLA 514 (943)
Q Consensus 436 ~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gi-e~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~ 514 (943)
.+|+=.+..+ |+ ...|-++...-|.++....-.+-+. .-..||......
T Consensus 295 ---------------------~~G~G~~e~~-----g~~~di~ii~~TLsKA~G~~GGfi~gs~--~~~~~l~~~~~~-- 344 (476)
T PLN02955 295 ---------------------ENGGGVAEEF-----NCEADVDLCVGTLSKAAGCHGGFIACSK--KWKQLIQSRGRS-- 344 (476)
T ss_pred ---------------------CCCCcHHHHh-----CCCCCCcEEEEeCccchhccCceeecHH--HHHHHHHHhCCC--
Confidence 0111111111 22 4678899999999883332211000 001233211100
Q ss_pred cccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccc
Q psy11047 515 IDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFI 594 (943)
Q Consensus 515 ~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~ 594 (943)
..|+-..+ ..-+...-.++..+=.+ ....++
T Consensus 345 ---~ifStalp-p~~aaa~laal~l~~~~--~~~r~~------------------------------------------- 375 (476)
T PLN02955 345 ---FIFSTAIP-VPMAAAAYAAVVVARKE--KWRRKA------------------------------------------- 375 (476)
T ss_pred ---Ceeccccc-HHHHHHHHHHHHHHhcC--HHHHHH-------------------------------------------
Confidence 00000000 00000000011111000 000000
Q ss_pred cccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe----ecccCCCcEEEE
Q psy11047 595 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV----PASLRIQGLGRA 670 (943)
Q Consensus 595 ~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s----~t~~~g~~~lR~ 670 (943)
-.++.++|.+.+ ++++ ..+|+.+.+. .+.....+.++|.++|. +++ |+.-.+..-+|+
T Consensus 376 --------L~~n~~~fr~~~----G~~~----~sPI~pI~ig-~~~~a~~~~~~L~~~Gi-~v~~i~yPtVP~g~~rLRi 437 (476)
T PLN02955 376 --------IWERVKEFKALS----GVDI----SSPIISLVVG-NQEKALKASRYLLKSGF-HVMAIRPPTVPPNSCRLRV 437 (476)
T ss_pred --------HHHHHHHHHHhc----CCCC----CCCEEEEEeC-CHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCceEEE
Confidence 123455555531 4433 3677777664 34446678889999996 444 344456677999
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 671 QNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 671 v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+++...|++||+++++.|.++...
T Consensus 438 ~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 438 TLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999877443
No 166
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.76 E-value=6.7e-06 Score=93.60 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. ++++++|.+ ..++|+|||+|+..++.+.. + .|| -.|
T Consensus 29 ~g~~~~~~e~----~la~~~g~~------------~~v~~~sgt~aL~~~l~al~---~------~pG---------d~V 74 (376)
T TIGR02379 29 DGPFSRRCET----WLENRTGTK------------KALLTPSCTAALEMAALLLD---I------QPG---------DEV 74 (376)
T ss_pred CcHHHHHHHH----HHHHHhCCC------------eEEEeCCHHHHHHHHHHHcC---C------CCc---------CEE
Confidence 3566666665 567777763 47899999999776655320 0 122 247
Q ss_pred EecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccc
Q psy11047 305 YCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVK 383 (943)
Q Consensus 305 ~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~ 383 (943)
+++..+|.+...++..-+..++.++++.+ +.+|+++++++++.. +.+|+.+ ..+|..-|+++|.+
T Consensus 75 iv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~------tk~Iip~---~~~G~~~d~~~I~~----- 140 (376)
T TIGR02379 75 IMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHR------TKAIVPV---HYAGVACDMDTIMA----- 140 (376)
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcC------ceEEEEe---CCCCCccCHHHHHH-----
Confidence 78899999998888544458899998865 689999999988753 4556544 35688888999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++..|+|++.+
T Consensus 141 ---------------la~~~~i-------~vIeDaa~~~g 158 (376)
T TIGR02379 141 ---------------LANKHQL-------FVIEDAAQGVM 158 (376)
T ss_pred ---------------HHHHCCC-------EEEEECccccC
Confidence 9999999 99999998755
No 167
>PRK05939 hypothetical protein; Provisional
Probab=98.76 E-value=1.5e-06 Score=99.65 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=90.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|..+ +++.|... .+.+++|+.|+..++.+. + .+| -.
T Consensus 44 ~g~p~~~~lE~~l----a~leg~~~------------~v~~ssG~~Ai~~~l~al----l------~~G---------d~ 88 (397)
T PRK05939 44 QGTPTTAALEAKI----TKMEGGVG------------TVCFATGMAAIAAVFLTL----L------RAG---------DH 88 (397)
T ss_pred CCCHHHHHHHHHH----HHHhCCCe------------EEEeCCHHHHHHHHHHHH----c------CCC---------CE
Confidence 3568889999865 67777642 467777888887666532 1 122 23
Q ss_pred EEecCCCch---HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 304 AYCSDQAHS---SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 304 V~~S~~aHy---Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
|++++..|. ++.+++...+..++.++++ |.++++++|+.+ +.+|+...-++.+|.+.|+++|++
T Consensus 89 Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~-- 155 (397)
T PRK05939 89 LVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGA-- 155 (397)
T ss_pred EEECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHH--
Confidence 556666543 4444443223477777763 789999988653 667888888889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++|+..
T Consensus 156 ------------------la~~~gi-------~livD~t~a~~ 173 (397)
T PRK05939 156 ------------------LCRERGL-------LYVVDNTMTSP 173 (397)
T ss_pred ------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
No 168
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=98.76 E-value=1.6e-06 Score=96.62 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++.+|.+.+ ..++|+|++++...++.+. . .+| -.|++++-+....
T Consensus 68 ~lr~~ia~~~~~~~~----------~i~~t~G~~~~l~~~~~~~----~------~~g---------d~v~~~~p~y~~~ 118 (359)
T PRK03158 68 ELRTKVAKHLGVDEE----------QLLFGAGLDEVIQMISRAL----L------NPG---------TNTVMAEPTFSQY 118 (359)
T ss_pred HHHHHHHHHhCCCHH----------HEEECCCHHHHHHHHHHHH----h------CCC---------CEEEEcCCCHHHH
Confidence 355667777787543 5789999999875443321 1 122 2355666566666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+|++ ++.+|++++++.++.. +.+++.+...+.+|.+-|.+++.+
T Consensus 119 ~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~---------------- 175 (359)
T PRK03158 119 RHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLS---------------- 175 (359)
T ss_pred HHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 66665444588999987 6889999998877542 445666677899999999998888
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. +|+ ++.+|.+|+.+
T Consensus 176 ----~~~~~~~~~-------~ii~De~y~~~ 195 (359)
T PRK03158 176 ----FLESVPSHV-------LVVLDEAYYEY 195 (359)
T ss_pred ----HHHhCCCCc-------EEEEECchHhh
Confidence 7766 578 99999999765
No 169
>PRK07505 hypothetical protein; Provisional
Probab=98.76 E-value=5.8e-06 Score=94.16 Aligned_cols=129 Identities=11% Similarity=-0.031 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.+....++.+.|++++|. + .+++++|++||..++..++.... .++ ...+|+...
T Consensus 89 ~~~~~~~l~~~la~~~~~-~------------~~~~~sG~~a~~~ai~~~~~~~~------~~~-------~~~vi~~~~ 142 (402)
T PRK07505 89 RSQILKDLEEALSELFGA-S------------VLTFTSCSAAHLGILPLLASGHL------TGG-------VPPHMVFDK 142 (402)
T ss_pred hhHHHHHHHHHHHHHhCC-C------------EEEECChHHHHHHHHHHHHhccc------CCC-------CCCEEEEch
Confidence 455666777888999886 3 35566778899888876543211 011 223567777
Q ss_pred CCchHHHHHH--HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 309 QAHSSVEKAG--LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 309 ~aHySv~KAa--~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
..|.|+.... ......++.+|.+ |+++|++.+... +.+++.+.+.+.+|.+.|+++|.+
T Consensus 143 ~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~-------- 203 (402)
T PRK07505 143 NAHASLNILKGICADETEVETIDHN-----DLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLR-------- 203 (402)
T ss_pred hhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHH--------
Confidence 9999875422 2223467777753 789999888543 346666677888899999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhc
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 421 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~G 421 (943)
+|++||+ ++++|.+++
T Consensus 204 ------------l~~~~~~-------~li~DEa~~ 219 (402)
T PRK07505 204 ------------LQEKYGL-------FLYIDDAHG 219 (402)
T ss_pred ------------HHHHcCC-------EEEEECccc
Confidence 9999999 999999984
No 170
>PRK12414 putative aminotransferase; Provisional
Probab=98.75 E-value=5.6e-06 Score=93.70 Aligned_cols=142 Identities=12% Similarity=0.010 Sum_probs=102.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++...+.+|+++++|.+... ....++|+||++++..++.+. + .+| -
T Consensus 62 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~~i~it~g~~~al~~~~~~l----~------~~g---------d 115 (384)
T PRK12414 62 YAPMAGIAALREALAEKTERLYGARYDP-------ASEVTVIASASEGLYAAISAL----V------HPG---------D 115 (384)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCCC-------CCcEEEECChHHHHHHHHHHh----c------CCC---------C
Confidence 4333345678888999999999985210 025899999999976665431 1 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHHHhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~eIa~ 378 (943)
.|++++-+|......+..-+.+++.++.++ ++.+|+++|++.++.. +.+|+.+...+.+|.+ +++++|.+
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~ 189 (384)
T PRK12414 116 EVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQ 189 (384)
T ss_pred EEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHH
Confidence 366677777766666644334788888874 5689999999988642 5566767788889987 45778888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+-.
T Consensus 190 --------------------~a~~~~~-------~ii~De~Y~~~ 207 (384)
T PRK12414 190 --------------------LTRNTDI-------VILSDEVYEHV 207 (384)
T ss_pred --------------------HHHHCCe-------EEEEhhhhhhc
Confidence 9999999 99999999754
No 171
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.75 E-value=7.8e-07 Score=101.10 Aligned_cols=125 Identities=10% Similarity=0.115 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|. .+++++|.+ ..++++|||+|+..++.+. + .+| + .|
T Consensus 52 ~~p~~~~le~----~la~l~g~~------------~~~~~~sG~~Ai~~al~al----~------~~G--------d-~V 96 (380)
T TIGR01325 52 ANPTVAAFEE----RIAALEGAE------------RAVATATGMSAIQAALMTL----L------QAG--------D-HV 96 (380)
T ss_pred CCchHHHHHH----HHHHHhCCC------------cEEEECCHHHHHHHHHHHH----h------CCC--------C-EE
Confidence 3566677775 457888874 3588999999998887542 1 122 1 25
Q ss_pred EecCCCchHHH----HHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVE----KAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~----KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...|.+.. +.+ .+|. ++..++.+ |+++++++++++ +.+|+....++.+|.+-|+++|.+
T Consensus 97 l~~~~~~~~t~~~~~~~~~~~g~-~v~~v~~~-----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~- 163 (380)
T TIGR01325 97 VASRSLFGSTVGFISEILPRFGI-EVSFVDPT-----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAE- 163 (380)
T ss_pred EEecCCcchHHHHHHHHHHHhCC-EEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHH-
Confidence 55666665432 233 2343 67777764 688888877543 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ +++||.+|+.+
T Consensus 164 -------------------la~~~gi-------~livD~a~~~~ 181 (380)
T TIGR01325 164 -------------------LAHAIGA-------LLVVDNVFATP 181 (380)
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
No 172
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.75 E-value=1.2e-06 Score=99.90 Aligned_cols=126 Identities=15% Similarity=0.056 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. +|++.|.+. ++++++|++|+..++.+. + .+| -.|
T Consensus 59 ~~p~~~~Le~~----lA~~~g~~~------------~i~~~sG~~Ai~~~l~al----l------~~G---------d~V 103 (388)
T PRK07811 59 GNPTRTALEEQ----LAALEGGAY------------GRAFSSGMAATDCLLRAV----L------RPG---------DHI 103 (388)
T ss_pred CCccHHHHHHH----HHHHhCCCc------------eEEeCCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 45777777764 477787753 467788898887776542 1 122 236
Q ss_pred EecCCCchHHHHHH-H-HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L-IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~-LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+..... . +. +..+..++. .|+++|+++|.++ +.+|+....++.+|.+.|+++|.+
T Consensus 104 l~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~-- 170 (388)
T PRK07811 104 VIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAE-- 170 (388)
T ss_pred EEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHH--
Confidence 67788887655443 2 22 224444443 4899999988653 567777778888899999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 171 ------------------la~~~gi-------~lIvD~a~a~~ 188 (388)
T PRK07811 171 ------------------LAHDAGA-------KVVVDNTFASP 188 (388)
T ss_pred ------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999755
No 173
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.74 E-value=4.4e-06 Score=94.12 Aligned_cols=128 Identities=14% Similarity=0.038 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
++.+.++|+.. ++++|.+ .++.|++||.|+..||.+. |+ .+.-.|+
T Consensus 24 g~~~~~fE~~~----a~~~g~~------------~~~~~~sgt~Al~~al~~l-------------~~-----~~gdeVi 69 (363)
T PF01041_consen 24 GPYVEEFEKEF----AEYFGVK------------YAVAVSSGTSALHLALRAL-------------GL-----GPGDEVI 69 (363)
T ss_dssp SHHHHHHHHHH----HHHHTSS------------EEEEESSHHHHHHHHHHHT-------------TG-----GTTSEEE
T ss_pred CHHHHHHHHHH----HHHhCCC------------eEEEeCChhHHHHHHHHhc-------------CC-----CcCceEe
Confidence 78999999855 6777753 5799999999999998762 11 1223578
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
+|..+..+...|...-+..++.+++| +++.||++++++.|++. +.+|+.+ ...|...++++|.+
T Consensus 70 ~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~------t~ai~~~---h~~G~~~d~~~i~~------ 134 (363)
T PF01041_consen 70 VPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPK------TKAILVV---HLFGNPADMDAIRA------ 134 (363)
T ss_dssp EESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTT------EEEEEEE----GGGB---HHHHHH------
T ss_pred cCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccC------ccEEEEe---cCCCCcccHHHHHH------
Confidence 89999999999885433488889988 89999999999999987 3445444 45677778999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++--|+|++-+
T Consensus 135 --------------~~~~~~i-------~lIeD~a~a~g 152 (363)
T PF01041_consen 135 --------------IARKHGI-------PLIEDAAQAFG 152 (363)
T ss_dssp --------------HHHHTT--------EEEEE-TTTTT
T ss_pred --------------HHHHcCC-------cEEEccccccC
Confidence 9999999 99999998766
No 174
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.73 E-value=1.2e-06 Score=98.95 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=85.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|.. +|++.|.+. .++++||++|+..++ . +++ +| + .
T Consensus 49 ~~~pt~~~le~~----la~l~g~~~------------~~~~~sG~~ai~~~~-~----ll~------~G--------d-~ 92 (366)
T PRK08247 49 TGNPTRGVLEQA----IADLEGGDQ------------GFACSSGMAAIQLVM-S----LFR------SG--------D-E 92 (366)
T ss_pred CCCchHHHHHHH----HHHHhCCCc------------EEEEcCHHHHHHHHH-H----HhC------CC--------C-E
Confidence 345677777764 588888753 488999998876443 2 121 22 2 3
Q ss_pred EEecCCCchHH----HHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSV----EKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv----~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|+++...+.+. .+.+. +| .+++.++. .|+++++++|+++ +.+|.....++.+|.+.++++|.+
T Consensus 93 Vl~~~~~y~~t~~~~~~~~~~~G-~~v~~vd~-----~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~ 160 (366)
T PRK08247 93 LIVSSDLYGGTYRLFEEHWKKWN-VRFVYVNT-----ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAK 160 (366)
T ss_pred EEEecCCcCcHHHHHHHHhhccC-ceEEEECC-----CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHH
Confidence 55555555443 22232 34 46677765 3789999988654 556776666777899999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 161 --------------------la~~~g~-------~lIvD~t~~~~ 178 (366)
T PRK08247 161 --------------------IAKKHGL-------LLIVDNTFYTP 178 (366)
T ss_pred --------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999654
No 175
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.73 E-value=1.3e-05 Score=91.99 Aligned_cols=160 Identities=15% Similarity=0.019 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
|..+-+.+..+++.....|..+....+|-..+.+++.+..|+.-.. ....++|.|+++|++.++.+--
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~-------~~eiivt~Ga~~al~~~~~a~~----- 110 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP-------EEEIIVTAGAKEALFLAFLALL----- 110 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCeEEEeCCHHHHHHHHHHHhc-----
Confidence 4444455555554432244455567788889999999998854321 1248999999999998887521
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC---CCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD---DKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D---~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.|| +- |++.+=.-.+......+-++.+..++++ .++++|.++|+++|..+ +.+++.+
T Consensus 111 -----~pG--------De-Vlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~k------tk~i~ln 170 (393)
T COG0436 111 -----NPG--------DE-VLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPK------TKAIILN 170 (393)
T ss_pred -----CCC--------CE-EEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCcc------ceEEEEe
Confidence 233 22 4444433333444445555588888864 48999999999999984 6799999
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.-++-||++-+ +++|++ +|++||+ |+-.|-+|.+.
T Consensus 171 ~P~NPTGav~~~~~l~~i~~--------------------~a~~~~i-------~ii~DEiY~~l 208 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVE--------------------LAREHDI-------IIISDEIYEEL 208 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHH--------------------HHHHcCe-------EEEEehhhhhc
Confidence 99999999955 777787 9999999 99999999887
No 176
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=98.73 E-value=6.8e-06 Score=97.03 Aligned_cols=156 Identities=7% Similarity=-0.171 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhC--CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIG--LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG--~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
++.++..+... +.. ...|..+....++-..+.+|+.+..+ +.. ...++|+|++++...++.+-
T Consensus 164 p~~~~~~~~~~-~~~-~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~----------~~I~it~G~~eal~~~~~~l--- 228 (517)
T PRK13355 164 PDEVVYDMAQQ-LTD-TEGYSDSKGLFSARKAIMQYAQLKGLPNVDV----------DDIYTGNGVSELINLSMSAL--- 228 (517)
T ss_pred CHHHHHHHHHH-hhc-CCCCCCCcChHHHHHHHHHHHHhcCCCCCCh----------hHEEEeCcHHHHHHHHHHHh---
Confidence 44455444433 332 22344433455565666666644332 222 36899999999987766531
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
+ .+| -.|++++-++.....++.+.+.+++.++++. ++.+|+++|++++... +.+++
T Consensus 229 -~------~~G---------d~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~ 286 (517)
T PRK13355 229 -L------DDG---------DEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSR------TKAIV 286 (517)
T ss_pred -C------CCC---------CEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcC------ceEEE
Confidence 1 122 2356667777766766655445778888764 5789999999988653 56677
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+..++-||.+-+ +.+|.+ +|++|++ |+.+|.+|.-+
T Consensus 287 i~nP~NPTG~v~~~~~l~~i~~--------------------~a~~~~~-------~ii~DE~Y~~~ 326 (517)
T PRK13355 287 IINPNNPTGALYPREVLQQIVD--------------------IAREHQL-------IIFSDEIYDRL 326 (517)
T ss_pred EECCCCCCCcCcCHHHHHHHHH--------------------HHHHcCc-------EEEEehhhhhh
Confidence 7778999999877 777777 9999999 99999999754
No 177
>PTZ00377 alanine aminotransferase; Provisional
Probab=98.73 E-value=1.7e-05 Score=92.78 Aligned_cols=148 Identities=14% Similarity=-0.008 Sum_probs=106.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..+....++-..+.+|+.+..|++-. ....++|+|++++...++.+.. . .+| -
T Consensus 111 Y~~~~G~~~LR~aia~~~~~~~g~~~~--------~~~I~it~Ga~~al~~~~~~l~----~-----~~g---------D 164 (481)
T PTZ00377 111 YTDSAGYPFVRKAVAAFIERRDGVPKD--------PSDIFLTDGASSGIKLLLQLLI----G-----DPS---------D 164 (481)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCCC--------hhhEEEcCCHHHHHHHHHHHhc----c-----CCC---------C
Confidence 444445667777888888887776532 1368999999999877765421 0 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++..-++.+...++.+-+.+++.+++++ .+.+|+++|++++.....++..+.+++.+...+-||.+-+ +++|+
T Consensus 165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~ 244 (481)
T PTZ00377 165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEII 244 (481)
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHH
Confidence 366677777777777755445778888864 3589999999999864444434666666677889999977 67777
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ |+.+|.+|+..
T Consensus 245 ~--------------------~a~~~~~-------~iI~De~Y~~l 263 (481)
T PTZ00377 245 K--------------------FCYEKGI-------VLMADEVYQEN 263 (481)
T ss_pred H--------------------HHHHCCC-------EEEEehhhHhh
Confidence 7 9999999 99999999854
No 178
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.72 E-value=1.2e-05 Score=91.58 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=101.3
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|.......++...+.+|+.+.+|.+-. ....++|+|+|+|+..++.+. .
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~--------~~~i~~t~G~~~al~~~~~~~----~---- 114 (402)
T PRK06107 51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYA--------DNEITVGGGAKQAIFLALMAT----L---- 114 (402)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC--------hhhEEEeCCHHHHHHHHHHHh----c----
Confidence 445555555433223333334457777888899888887532 136899999999987776431 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| -.|++++-.++....+...-....+.++++ +.+.+|+++|++++... +.+|+.+..++
T Consensus 115 --~~g---------d~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~N 177 (402)
T PRK06107 115 --EAG---------DEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSN 177 (402)
T ss_pred --CCC---------CEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCC
Confidence 122 245666655444444443323355667764 34579999999887532 55667777788
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHc-CCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSY-FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~-Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+|.+-+ ++++++ +|++| |+ |+.+|-+|+..
T Consensus 178 PtG~~~s~~~~~~l~~--------------------~a~~~~~~-------~iI~De~y~~l 212 (402)
T PRK06107 178 PTGAVYSRAELRALAD--------------------VLLRHPHV-------LVLTDDIYDHI 212 (402)
T ss_pred CCCcCcCHHHHHHHHH--------------------HHHHcCCe-------EEEEehhcccc
Confidence 9998865 556666 89998 99 99999999754
No 179
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.72 E-value=2.6e-06 Score=97.61 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...+||..+ |++.|.+ ..++++||+.|+..++.+. + .+| -.|
T Consensus 62 ~~p~~~~Le~~i----A~~~g~~------------~~l~~~sG~~Ai~~al~~l----l------~~G---------d~V 106 (400)
T PRK06234 62 GNPTSTEVENKL----ALLEGGE------------AAVVAASGMGAISSSLWSA----L------KAG---------DHV 106 (400)
T ss_pred CCccHHHHHHHH----HHHhCCC------------cEEEEcCHHHHHHHHHHHH----h------CCC---------CEE
Confidence 568888888755 6667753 3589999999987776532 1 122 235
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|.+... ++...+.+++.++.+ |+++++++|+.. +.+|+....++.+|.+-|+++|.+
T Consensus 107 l~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~-- 173 (400)
T PRK06234 107 VASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISN-- 173 (400)
T ss_pred EEecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHH--
Confidence 666766655333 233334467777653 789999988653 567777788888999999999999
Q ss_pred cccccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++ |+ ++.+|.+|+..
T Consensus 174 ------------------la~~~~~~i-------~livDea~~~~ 193 (400)
T PRK06234 174 ------------------IAHENNKEC-------LVFVDNTFCTP 193 (400)
T ss_pred ------------------HHHhcCCCC-------EEEEECCCCch
Confidence 99997 88 99999999755
No 180
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.72 E-value=6.6e-06 Score=95.64 Aligned_cols=136 Identities=9% Similarity=0.001 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
+|...++|.. +|+++|.+ ..++|+|||+|++.|+.+.....+.. .++ .+.-.|+
T Consensus 62 G~~~~~fe~~----lA~~~g~~------------~~v~~~sGt~al~~aL~al~~~~~~~-----~~~-----~pGd~VI 115 (438)
T PRK15407 62 GRFNDAFEKK----LAEFLGVR------------YALLVNSGSSANLLAFSALTSPKLGD-----RAL-----KPGDEVI 115 (438)
T ss_pred ChhHHHHHHH----HHHHhCCC------------eEEEECCHHHHHHHHHHHHhhccccc-----cCC-----CCCCEEE
Confidence 4555667654 56777764 36899999999999987653221110 011 1223477
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++..+|.+...+...-+..++.++++ .++.+|++++++++..+ +.+|+.+. ..|...++++|.+
T Consensus 116 v~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~------tkaVi~~~---~~G~p~dl~~I~~------ 180 (438)
T PRK15407 116 TVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPK------TKAIMIAH---TLGNPFDLAAVKA------ 180 (438)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcC------CeEEEEeC---CCCChhhHHHHHH------
Confidence 88999999888875433477778876 57889999999988653 45566554 2456678999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|+|++-+
T Consensus 181 --------------la~~~gi-------~vIeDaa~a~G 198 (438)
T PRK15407 181 --------------FCDKHNL-------WLIEDNCDALG 198 (438)
T ss_pred --------------HHHHCCC-------EEEEECccchh
Confidence 9999999 99999998755
No 181
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.71 E-value=6.5e-06 Score=91.86 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=103.0
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.|........+...+.+|+.+..|++-+ .. ..++|+|++++...++.+. . .+|- .
T Consensus 31 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~--------~~~~Iiit~Gs~~ai~~~~~~~----~------~~g~------~ 86 (350)
T TIGR03537 31 QYPSALGTKALREAISGWFERRFGVKLD--------PDAQVLPSAGSKEAIFHFPLVF----I------DPEE------D 86 (350)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCCcEEEcCChHHHHHHHHHHH----c------CCCC------C
Confidence 3433334568888899999888786532 12 5899999999986655432 1 1220 0
Q ss_pred ceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHH
Q psy11047 301 RLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCC 375 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~e 375 (943)
.-.|++..-++.....++..-+.+++.++.+. ...+|++++++++..+ +.+++.+..++.+|.+-| +++
T Consensus 87 ~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 87 RRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEE------TKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred CceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhc------cEEEEEeCCCCCcCcccCHHHHHH
Confidence 12466667777777777755445888888863 3468999999988753 556777778899998877 777
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ ++.+|.+|+-.
T Consensus 161 l~~--------------------~a~~~~~-------~ii~De~y~~~ 181 (350)
T TIGR03537 161 TIA--------------------MCREHGI-------ILCSDECYTEI 181 (350)
T ss_pred HHH--------------------HHHHcCc-------EEEEecccccc
Confidence 777 8999999 99999999754
No 182
>PLN02509 cystathionine beta-lyase
Probab=98.71 E-value=1.6e-06 Score=101.46 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
|...++| ++++++.|.+ ..++++||+.+. .+++. ++ .+| -.|++
T Consensus 133 pt~~aLE----~~lA~leg~e------------~ai~~~SG~aAi-~~il~----ll------~~G---------D~VI~ 176 (464)
T PLN02509 133 PTRDALE----SLLAKLDKAD------------RAFCFTSGMAAL-SAVTH----LI------KNG---------EEIVA 176 (464)
T ss_pred HHHHHHH----HHHHHHhCCC------------EEEEeCcHHHHH-HHHHH----Hh------CCC---------CEEEE
Confidence 5555555 4677887643 356778887653 33332 12 123 23667
Q ss_pred cCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccc
Q psy11047 307 SDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIV 382 (943)
Q Consensus 307 S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~ 382 (943)
++..|.+..+.+ ...+..++.++. .|.++++++|..+ +.+|+.+..++.+|.+.|+++|++
T Consensus 177 ~~~~y~~t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~---- 241 (464)
T PLN02509 177 GDDVYGGSDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAE---- 241 (464)
T ss_pred cCCchhhHHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHH----
Confidence 888887766443 223346666653 3688888888543 568888889999999999999999
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.||.||+..
T Consensus 242 ----------------lAk~~g~-------~lIVD~A~a~~ 259 (464)
T PLN02509 242 ----------------MAHAQGA-------LVLVDNSIMSP 259 (464)
T ss_pred ----------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999998755
No 183
>PRK08960 hypothetical protein; Provisional
Probab=98.71 E-value=6.4e-06 Score=93.14 Aligned_cols=158 Identities=8% Similarity=-0.042 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+...+......|..++...++...+.+|+.+..|++-. ....++|+|++++...++.+- .
T Consensus 48 ~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~--------~~~i~it~G~~~al~~~~~~~----~-- 113 (387)
T PRK08960 48 EPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVD--------PERILVTPGGSGALLLASSLL----V-- 113 (387)
T ss_pred HHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCC--------hhhEEEccCcHHHHHHHHHHh----c--
Confidence 33445555555433334544555667777788888877776432 136899999999987665431 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|++++-+|.+....+..-+.+++.++++.+ +.+|+++|++.+++. +.+++.+..
T Consensus 114 ----~~g---------d~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p 174 (387)
T PRK08960 114 ----DPG---------KHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNAD------TVGALVASP 174 (387)
T ss_pred ----CCC---------CEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCcc------ceEEEEECC
Confidence 122 24677888888887777543447888888654 479999999887654 445666677
Q ss_pred CCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+|.+-+.+ +|++ +|++||+ |+.+|.+|...
T Consensus 175 ~NPtG~~~~~~~~~~l~~--------------------~~~~~~~-------~li~De~Y~~~ 210 (387)
T PRK08960 175 ANPTGTLLSRDELAALSQ--------------------ALRARGG-------HLVVDEIYHGL 210 (387)
T ss_pred CCCCCcCcCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 88999987654 5555 8999999 99999999765
No 184
>PRK06836 aspartate aminotransferase; Provisional
Probab=98.71 E-value=1.4e-05 Score=90.84 Aligned_cols=161 Identities=12% Similarity=-0.047 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcc---CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL---GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 206 silgd~L~~alN~n---~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
..+.+.+..+++.. ...|........+...+.+|+.+..+.+-. ....++|+|+|++...++.+.
T Consensus 49 ~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~--------~~~i~~t~G~~~al~~~~~~l---- 116 (394)
T PRK06836 49 AAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT--------ADHIVMTCGAAGALNVALKAI---- 116 (394)
T ss_pred HHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC--------cCcEEEeCChHHHHHHHHHHh----
Confidence 34445554444322 122323333445555566666665544211 135789999999986665432
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
. .+| -.|++++-++.....++...+.+++.++++++ +.+|+++|++.++.+ +.+|+.+
T Consensus 117 ~------~~g---------d~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~------~~~v~~~ 175 (394)
T PRK06836 117 L------NPG---------DEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPK------TKAVIIN 175 (394)
T ss_pred c------CCC---------CEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcC------ceEEEEe
Confidence 1 122 23666777777666666433448999998766 789999999998653 5567777
Q ss_pred cCCCcccccccHHHhhhhccccccccccccccCchHHHHHH------cCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS------YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~------~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..++.+|.+-|.+++.+ +-.+|++ ||+ |+-+|.+|+.+
T Consensus 176 ~p~NPtG~~~~~~~~~~-----------------l~~la~~~~~~~~~~~-------~ii~De~y~~~ 219 (394)
T PRK06836 176 SPNNPTGVVYSEETLKA-----------------LAALLEEKSKEYGRPI-------YLISDEPYREI 219 (394)
T ss_pred CCCCCCCcCCCHHHHHH-----------------HHHHHHHhhhccCCCe-------EEEEecccccc
Confidence 78999999877554443 0017888 899 99999999765
No 185
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=98.70 E-value=1.5e-05 Score=90.71 Aligned_cols=134 Identities=11% Similarity=-0.004 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC-ch
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA-HS 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a-Hy 312 (943)
.++.+.|++++|++ ...|+++||+||..|+..||.+..++ .++. .++.+|++-+.+ |-
T Consensus 82 ~~l~~~l~~~~~~~------------~~~~~~SGs~A~e~ai~~a~~~~~~~-----~~~~----~~~~~i~~~~~~yhg 140 (401)
T TIGR01885 82 GEFAEYVTKLFGYD------------KVLPMNTGAEAVETAIKLARKWGYKV-----KGIP----ENQAIIVSAKGNFHG 140 (401)
T ss_pred HHHHHHHHhhcCCC------------EEEEeCccHHHHHHHHHHHHHHhhhh-----cCCC----CCCCEEEEECCCcCc
Confidence 33444667777754 35899999999999999998753211 1110 123455555556 44
Q ss_pred HHHHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHh
Q psy11047 313 SVEKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCL 376 (943)
Q Consensus 313 Sv~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eI 376 (943)
+..-+..++. ..+..++-+ |+++|++.|+... ....+|+.--....+|.+-| +++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~avi~E~v~~~~G~~~~~~~~l~~l 212 (401)
T TIGR01885 141 RTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG---PNVCAFIVEPIQGEAGVVVPDDGYLKKV 212 (401)
T ss_pred ccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC---CCEEEEEEeCccCCCCCccCCHHHHHHH
Confidence 5444443321 123333332 6899999886432 12334443223334577765 8999
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++||+ ++.+|.++.|.
T Consensus 213 ~~--------------------l~~~~~~-------lli~DEv~~g~ 232 (401)
T TIGR01885 213 RE--------------------LCTKHNV-------LLIADEIQTGL 232 (401)
T ss_pred HH--------------------HHHHcCC-------EEEEechhhCC
Confidence 99 9999999 99999998664
No 186
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.70 E-value=3.5e-06 Score=97.49 Aligned_cols=126 Identities=9% Similarity=-0.062 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|.. ||++.|.+ ..+++++|++|+..++.+.. .+| + .|
T Consensus 56 ~~pt~~~Le~~----lA~l~g~~------------~~l~~ssG~~Ai~~al~al~----------~~G--------d-~V 100 (425)
T PRK06084 56 MNPTNDVLEQR----VAALEGGV------------GALAVASGMAAITYAIQTIA----------EAG--------D-NI 100 (425)
T ss_pred CCchHHHHHHH----HHHHhCCC------------ceeEehhHHHHHHHHHHHHh----------CCC--------C-EE
Confidence 45777777764 57777743 36899999999887776431 122 1 25
Q ss_pred EecCCCchHHHHHH-H-HC--CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAG-L-IG--LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa-~-LG--~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...+......+ . +- +..+..++. .|+++++++|+++ +.+|+....++.+|.+-|+++|.+
T Consensus 101 l~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~~------tklV~lesp~NPtG~v~dl~~I~~-- 167 (425)
T PRK06084 101 VSVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDER------TKAVFCESIGNPAGNIIDIQALAD-- 167 (425)
T ss_pred EEeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhccC------CcEEEEeCCCCCCCeecCHHHHHH--
Confidence 55555555444433 2 11 123444443 4899999998764 556777778889999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 168 ------------------la~~~~i-------~vVvD~a~a~~ 185 (425)
T PRK06084 168 ------------------AAHRHGV-------PLIVDNTVATP 185 (425)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
No 187
>PRK09265 aminotransferase AlaT; Validated
Probab=98.69 E-value=2.3e-05 Score=89.28 Aligned_cols=112 Identities=9% Similarity=-0.197 Sum_probs=83.1
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD 337 (943)
..++|+|+++++..++.+. + .+| -.|++++-+|.....++..-+.+++.++++. .+.+|
T Consensus 97 ~i~~t~G~~~~l~~~~~~~----~------~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d 157 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQAL----L------NNG---------DEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPD 157 (404)
T ss_pred cEEEeCChHHHHHHHHHHh----C------CCC---------CEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCC
Confidence 6789999999886665431 1 122 2366778888887777754334667777653 46799
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhh
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 414 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwL 414 (943)
.+++++.+... +.+|+.+..++.+|.+-+ +++|.+ +|+++|+ ++
T Consensus 158 ~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~i~~--------------------~a~~~~~-------~i 204 (404)
T PRK09265 158 LDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEEIVE--------------------IARQHNL-------II 204 (404)
T ss_pred HHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHHHHH--------------------HHHHCCC-------EE
Confidence 99999887543 556777778889999877 777887 9999999 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
.+|.+|+.+
T Consensus 205 i~De~y~~~ 213 (404)
T PRK09265 205 FADEIYDKI 213 (404)
T ss_pred EEehhhhhc
Confidence 999999865
No 188
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.69 E-value=3.1e-06 Score=96.60 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=90.1
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|...++|. .+|++.|.+ ..++|+||++|+..++.+- + .+| ..
T Consensus 48 ~~~p~~~~le~----~lA~l~g~~------------~v~~~~gg~~Ai~~~l~al----l------~~G---------D~ 92 (382)
T TIGR02080 48 SGNPTRDLLQQ----ALAELEGGA------------GAVVTNTGMSAIHLVTTAL----L------GPD---------DL 92 (382)
T ss_pred CCCchHHHHHH----HHHHHhCCC------------cEEEEcCHHHHHHHHHHHH----c------CCC---------CE
Confidence 34566777766 567888732 4789999999987666542 1 122 24
Q ss_pred EEecCCCchHHHHHH-H---HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~---LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..... . .+...+..++. .|+++++++|+.+ +.+|+.+..++.+|.+-|+++|.+
T Consensus 93 Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~- 160 (382)
T TIGR02080 93 LVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICH- 160 (382)
T ss_pred EEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHH-
Confidence 667777877654433 2 23334444432 3789999888653 567777888899999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+.+
T Consensus 161 -------------------la~~~g~-------~vvvD~a~~~~ 178 (382)
T TIGR02080 161 -------------------LAKAVGA-------VVVVDNTFLSP 178 (382)
T ss_pred -------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999654
No 189
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.69 E-value=2.8e-06 Score=97.57 Aligned_cols=128 Identities=9% Similarity=-0.016 Sum_probs=91.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|...++|+. +|++.|.+ ..+++++|+.|+..++.+. + .+| -
T Consensus 66 r~~~p~~~~le~~----lA~l~g~~------------~al~~~sG~~Ai~~~l~al----l------~~G---------d 110 (403)
T PRK07810 66 RYGNPTVSMFEER----LRLIEGAE------------ACFATASGMSAVFTALGAL----L------GAG---------D 110 (403)
T ss_pred CCCCchHHHHHHH----HHHHhCCC------------cEEEECChHHHHHHHHHHH----h------CCC---------C
Confidence 3466778888875 47888864 3689999999988766542 1 122 2
Q ss_pred EEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.... +.+..-+..+..++.+ |+++++++|+++ +.+|+...-++.+|.+-|+++|++
T Consensus 111 ~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~~esp~Nptg~v~dl~~I~~ 179 (403)
T PRK07810 111 RLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSVP------TQAVFFETPSNPMQSLVDIAAVSE 179 (403)
T ss_pred EEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeecCHHHHHH
Confidence 4666766663332 2232223467777642 889999998764 567777788888999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||.+|+..
T Consensus 180 --------------------la~~~g~-------~vivD~a~a~~ 197 (403)
T PRK07810 180 --------------------LAHAAGA-------KVVLDNVFATP 197 (403)
T ss_pred --------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999754
No 190
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.69 E-value=2.5e-06 Score=98.35 Aligned_cols=128 Identities=9% Similarity=0.036 Sum_probs=89.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|...++|. .+|++.|.+ ..++|++|++|+..++.+.. .+| +
T Consensus 53 r~~~p~~~~le~----~lA~l~g~~------------~~v~~~sG~~Ai~~al~~l~----------~~G--------d- 97 (418)
T TIGR01326 53 RLMNPTTDVLEQ----RIAALEGGV------------AALAVASGQAAITYAILNLA----------QAG--------D- 97 (418)
T ss_pred CCCChhHHHHHH----HHHHHhCCC------------eEEEEccHHHHHHHHHHHHh----------CCC--------C-
Confidence 345566666666 458888864 36899999999988876531 122 1
Q ss_pred EEEecCCCchHHH----HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 303 VAYCSDQAHSSVE----KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 303 vV~~S~~aHySv~----KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
.|+++...|.+.. +.+..-+..++.++.+ |+++++++|.+. +.+|+....++.+|.+-|+++|++
T Consensus 98 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~ 166 (418)
T TIGR01326 98 NIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAE 166 (418)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHH
Confidence 3556666664432 2332223467777653 789999888653 456666667778899999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+..
T Consensus 167 --------------------la~~~~i-------~livD~t~~~~ 184 (418)
T TIGR01326 167 --------------------VAHAHGV-------PLIVDNTFATP 184 (418)
T ss_pred --------------------HHHHcCC-------EEEEECCCchh
Confidence 9999999 99999999744
No 191
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=98.69 E-value=6.5e-06 Score=92.10 Aligned_cols=125 Identities=11% Similarity=-0.026 Sum_probs=87.9
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+++.+|+.+|.+.+ ..++|+|++++...++.+- . .+| .-.|++.+-.+....
T Consensus 65 Lr~aia~~~~~~~~----------~I~it~Gs~~~i~~~~~~~----~------~~g--------~d~vlv~~P~y~~y~ 116 (354)
T PRK04635 65 LINAYSAYAGVAPE----------QILTSRGADEAIELLIRAF----C------EPG--------QDSIACFGPTYGMYA 116 (354)
T ss_pred HHHHHHHHhCcCHH----------HEEEeCCHHHHHHHHHHHh----c------CCC--------CCeEEEcCCChHHHH
Confidence 45566777888765 6899999999986665431 1 121 123455555555455
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
..+...+.+++.+|+++++.+|.+.+++ + . .+.+|+.+...+-||.+-|.+++.+
T Consensus 117 ~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~----------------- 171 (354)
T PRK04635 117 ISAETFNVGVKALPLTADYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQ----------------- 171 (354)
T ss_pred HHHHHcCCEEEEEecCCCCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHH-----------------
Confidence 5555444588999998788999998862 3 1 2567777889999999999999888
Q ss_pred hHHHHHHc-CCCCCccchhhhHHhhhcCC
Q psy11047 396 FPNFILSY-FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 396 fR~iar~~-Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. ++ ++.+|.||.-+
T Consensus 172 ---l~~~~~~~-------~vivDeay~~~ 190 (354)
T PRK04635 172 ---LIEMTPDA-------IVVVDEAYIEF 190 (354)
T ss_pred ---HHHhCCCc-------EEEEeCchHhh
Confidence 77653 57 99999999754
No 192
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.68 E-value=3.1e-06 Score=97.18 Aligned_cols=126 Identities=10% Similarity=-0.009 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+ .+++++|.+. .+++++|+.|+..++.+. + .+| -.|
T Consensus 63 ~~p~~~~le~----~lA~l~g~~~------------~i~~~sG~~Al~~~l~~l----l------~~G---------d~V 107 (403)
T PRK07503 63 SNPTLALLEQ----RMASLEGGEA------------AVALASGMGAITATLWTL----L------RPG---------DEV 107 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc------------EEEEcCHHHHHHHHHHHH----c------CCC---------CEE
Confidence 4677777776 5688888753 578889999876665431 1 122 235
Q ss_pred EecCCCchHHHH----HHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEK----AGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~K----Aa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
+++...|..... ++..-+..++.++.+ |+++++++|+++ +.+|+....++.+|.+-|+++|.+
T Consensus 108 iv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~-- 174 (403)
T PRK07503 108 IVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAE-- 174 (403)
T ss_pred EEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHH--
Confidence 566666643322 222223366666653 689999888653 556776777888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++|+..
T Consensus 175 ------------------la~~~gi-------~lIvD~a~a~~ 192 (403)
T PRK07503 175 ------------------IAHGAGA-------KVVVDNTYCTP 192 (403)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999999754
No 193
>PLN02271 serine hydroxymethyltransferase
Probab=98.68 E-value=2.4e-06 Score=101.10 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc-EEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG-GVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~-GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.-...++|..+++...++||++... ++ -|---+||.||+.++++- + .|| -.|
T Consensus 189 ~~~iD~iE~la~era~~lF~~~~~~--------~gaNVQp~SGs~AN~aV~~AL----l------~PG---------D~I 241 (586)
T PLN02271 189 NQYIDQIERLCCERALAAFGLDSEK--------WGVNVQPYSCTSANFAVYTGL----L------LPG---------DRI 241 (586)
T ss_pred ChhHHHHHHHHHHHHHHHhCCcccc--------cccceeeccHHHHHHHHHHHh----c------CCC---------CEE
Confidence 3456799999999999999987531 11 244559999998887642 1 233 123
Q ss_pred Ee---cCCCchHHH-------HHHHHCCccEEEEe--cC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc
Q psy11047 305 YC---SDQAHSSVE-------KAGLIGLVNMRYIE--SD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD 371 (943)
Q Consensus 305 ~~---S~~aHySv~-------KAa~LG~~~v~~Vp--~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID 371 (943)
+. +.-+|.+.. ++...|. .+..++ +| ++|.+|.++|++..... .|.+|++..- ... ..-
T Consensus 242 L~ldl~~GGHlshg~~~~~g~~vs~sG~-~~~~vpY~~d~~~g~IDyd~lek~a~~~-----rPKLII~g~S-ayp-r~~ 313 (586)
T PLN02271 242 MGLDSPSGGHMSHGYYTPGGKKVSGASI-FFESLPYKVNPQTGYIDYDKLEEKALDF-----RPKILICGGS-SYP-REW 313 (586)
T ss_pred EEecCCCCCchhcccccccccccccccc-eEEEEEcccccccCccCHHHHHHHhhhc-----CCeEEEECch-hcc-CcC
Confidence 33 335676643 1222343 344554 64 68999999999854332 2777776332 222 556
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|++++++ +|+++|+ ++.+|+|+..+
T Consensus 314 D~~~i~e--------------------IAdevGA-------~LmvD~AH~aG 338 (586)
T PLN02271 314 DYARFRQ--------------------IADKCGA-------VLMCDMAHISG 338 (586)
T ss_pred CHHHHHH--------------------HHHHcCC-------EEEEECccccc
Confidence 7999999 9999999 99999998776
No 194
>PRK07337 aminotransferase; Validated
Probab=98.68 E-value=1.2e-05 Score=90.89 Aligned_cols=156 Identities=12% Similarity=0.006 Sum_probs=108.1
Q ss_pred HHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhc
Q psy11047 208 LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287 (943)
Q Consensus 208 lgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~ 287 (943)
+.+.+...+......|.......++...+.+|+.+..|.+-. ....++|+|+|+|...++.+- +
T Consensus 48 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~i~~t~G~~~al~~~~~~l----~---- 111 (388)
T PRK07337 48 VVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVA--------PERIVVTAGASAALLLACLAL----V---- 111 (388)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------hHhEEEecCcHHHHHHHHHHh----c----
Confidence 344455444433333444445678888888898888886422 135789999999976655431 1
Q ss_pred ccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC
Q psy11047 288 QSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP 365 (943)
Q Consensus 288 ~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT 365 (943)
.+| -.|++++-+|.+...++..-+.+++.++.+. ++.+|+++|++.+... +.+|+.+...+
T Consensus 112 --~~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~N 174 (388)
T PRK07337 112 --ERG---------DEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGER------TRGVLLASPSN 174 (388)
T ss_pred --CCC---------CEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCcc------ceEEEEECCCC
Confidence 122 2467778888887777643334788888864 4689999999888643 45666677888
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+|.+-+ +++|.+ +|+++|+ |+.+|.+|..+
T Consensus 175 PtG~~~~~~~~~~i~~--------------------~a~~~~~-------~ii~De~y~~~ 208 (388)
T PRK07337 175 PTGTSIAPDELRRIVE--------------------AVRARGG-------FTIVDEIYQGL 208 (388)
T ss_pred CCCcCcCHHHHHHHHH--------------------HHHHCCC-------EEEEecccccc
Confidence 9998765 667777 8999999 99999999865
No 195
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=98.67 E-value=8.1e-06 Score=92.03 Aligned_cols=169 Identities=14% Similarity=-0.027 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccc
Q psy11047 171 WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEF 250 (943)
Q Consensus 171 ~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~f 250 (943)
.++.++.+.+.+..|....- -.|+|.- ..|.+... ...++...+ ....+...+.+++|+++|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~ylgl~----~~~~~~~~-~~~~~~~~~-------g~~~~~~~Le~~lA~~~g~~~e- 72 (346)
T TIGR03576 7 REKALEIIREKISRGGRDSL-YDLTGLA----GGFKIDEE-DLELLETYV-------GPAIFEEKVQELGREHLGGPEE- 72 (346)
T ss_pred HHHHHHHHHHHHhccCCccc-cccccCC----CChhHHHH-HHHHHHHhc-------CCHHHHHHHHHHHHHHcCCCcc-
Confidence 46677777777765532211 1244432 33444433 223333332 1337777788899999999654
Q ss_pred cccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe-c-CCCchHHHHHHHHCCccEEEE
Q psy11047 251 LHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC-S-DQAHSSVEKAGLIGLVNMRYI 328 (943)
Q Consensus 251 l~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~-S-~~aHySv~KAa~LG~~~v~~V 328 (943)
..++++||++||..++.+- . .+| +.+++. + ...|.|+..++.+.+.++..
T Consensus 73 ---------~ilv~~gg~~a~~~~~~al----~------~~g--------d~Vli~~~d~p~~~s~~~~~~l~ga~~~~- 124 (346)
T TIGR03576 73 ---------KILVFNRTSSAILATILAL----E------PPG--------RKVVHYLPEKPAHPSIPRSCKLAGAEYFE- 124 (346)
T ss_pred ---------eEEEECCHHHHHHHHHHHh----C------CCC--------CEEEECCCCCCCchhHHHHHHHcCCEEec-
Confidence 5789999999998776642 1 122 233332 3 46999998888653334322
Q ss_pred ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCC
Q psy11047 329 ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 405 (943)
Q Consensus 329 p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl 405 (943)
. .+.++|+ .. . .+.+|+.| |+...|.+ .||++|.+ +|++||.
T Consensus 125 -~-----~~l~~l~----~~-~---~~~lIiit-g~s~~G~v~~~~~L~~i~~--------------------la~~~~~ 169 (346)
T TIGR03576 125 -S-----DELSELK----KI-D---GTSLVVIT-GSTMDLKVVSEEDLKRVIK--------------------QAKSKEA 169 (346)
T ss_pred -c-----CCHHHHh----hC-c---CceEEEEE-CCCCCCcccCHHHHHHHHH--------------------HHHHcCC
Confidence 1 1334432 11 1 14455554 56777887 78999999 9999999
Q ss_pred CCCccchhhhHHhhhcCC
Q psy11047 406 KFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 406 ~~~~l~lwLHVDAA~GG~ 423 (943)
|+.||-||+.+
T Consensus 170 -------~livDEAy~~~ 180 (346)
T TIGR03576 170 -------IVLVDDASGAR 180 (346)
T ss_pred -------EEEEECCcccc
Confidence 99999999865
No 196
>PRK07681 aspartate aminotransferase; Provisional
Probab=98.67 E-value=2.4e-05 Score=89.05 Aligned_cols=158 Identities=6% Similarity=0.004 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+.+.+...++.. ...|. .+....+-..+.+|+.+..|++-.. ....++|+|++++...++.+. +
T Consensus 48 ~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~-------~~~I~it~G~~~al~~~~~~~----~- 114 (399)
T PRK07681 48 DFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA-------DKEVLLLMGSQDGLVHLPMVY----A- 114 (399)
T ss_pred HHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC-------CCeEEECCCcHHHHHHHHHHh----C-
Confidence 34555555555432 12222 2345667777888888777764320 025789999999976654431 1
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| ..|++.+-++......+..-+.+++.+|++++ +.+|++++++++... +.+|+.+.
T Consensus 115 -----~~G---------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~ 174 (399)
T PRK07681 115 -----NPG---------DIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNF 174 (399)
T ss_pred -----CCC---------CEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeC
Confidence 122 23666677777666666544458888998754 467999998887542 56677776
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+-+|.+-+ +++|.+ +|++||+ |+-+|.+|+.+
T Consensus 175 P~NPTG~~~s~~~~~~i~~--------------------~a~~~~~-------~iI~De~y~~~ 211 (399)
T PRK07681 175 PGNPVPAMAHEDFFKEVIA--------------------FAKKHNI-------IVVHDFAYAEF 211 (399)
T ss_pred CCCCcCcCCCHHHHHHHHH--------------------HHHHcCe-------EEEEeccchhh
Confidence 7888998877 666777 8999999 99999999865
No 197
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.67 E-value=7.3e-06 Score=92.42 Aligned_cols=127 Identities=10% Similarity=-0.064 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
...+.+|+.+|++.+ ..++|+|++++...++.+. . .+| ..|++.+-++.+.
T Consensus 71 ~Lr~~ia~~~~~~~~----------~I~it~G~~~~l~~~~~~~----~------~~g---------d~vlv~~p~y~~~ 121 (369)
T PRK08153 71 DLRHALAAHHGVAPE----------NIMVGEGIDGLLGLIVRLY----V------EPG---------DPVVTSLGAYPTF 121 (369)
T ss_pred HHHHHHHHHhCCCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEECCCcchHH
Confidence 344556666787654 5889999999875544321 1 122 2466677777777
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+.+-+.+++.+|.+++ .+|++++.+.+.... +.+++.+...+-+|.+-|.+++.+
T Consensus 122 ~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~~~-----~~~i~l~~P~NPtG~~~~~~~l~~---------------- 179 (369)
T PRK08153 122 NYHVAGFGGRLVTVPYRDD-REDLDALLDAARREN-----APLVYLANPDNPMGSWHPAADIVA---------------- 179 (369)
T ss_pred HHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcccC-----CcEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 7666432348888998665 488888877665321 445666678888999988888777
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. ++. |+.+|-+|+.+
T Consensus 180 ----l~~~~~~~~-------~lI~DE~y~~~ 199 (369)
T PRK08153 180 ----FIEALPETT-------LLVLDEAYCET 199 (369)
T ss_pred ----HHHhCCCCc-------EEEEeCchhhh
Confidence 5543 377 99999999754
No 198
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.67 E-value=2.8e-06 Score=91.74 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=187.6
Q ss_pred HHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHH
Q psy11047 238 NWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKA 317 (943)
Q Consensus 238 ~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KA 317 (943)
+.|++++|++. .-+|.|+-+|-+..|.+-. .+ ...|++-..+||+..-|
T Consensus 68 ~dlaeFlg~D~------------~R~t~GARe~KfavMhal~----------~~---------gd~vV~D~~aHYttyvA 116 (382)
T COG1103 68 EDLAEFLGMDE------------VRVTAGAREAKFAVMHALC----------KE---------GDWVVVDSLAHYTTYVA 116 (382)
T ss_pred HHHHHHhCCce------------eeecccchhhHHHHHHHhc----------cC---------CCEEEEcCcchHHHHHH
Confidence 34899999975 4689999999887776421 11 22466788999999999
Q ss_pred HHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccC-CCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 318 GLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKH-LIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 318 a~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG-~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
+...+-++..||-. ....++++...+.|++-..++ ..|.+...|+..-+.|.+.|.+.+++
T Consensus 117 AEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~---------------- 180 (382)
T COG1103 117 AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAK---------------- 180 (382)
T ss_pred HHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHH----------------
Confidence 95544488999854 478999999999999877765 67889999999999999999999999
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLG 474 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie 474 (943)
+|++||+ .+-+.+||... .+ |. + .+ . -
T Consensus 181 ----ic~e~gv-------PlllN~AYt~G-rm--pv--------------------------------s--~k----e-~ 207 (382)
T COG1103 181 ----ICREYGV-------PLLLNCAYTVG-RM--PV--------------------------------S--GK----E-I 207 (382)
T ss_pred ----HHHHcCC-------ceEeecceeec-cc--cc--------------------------------c--cc----c-c
Confidence 9999999 89999999876 33 11 0 01 1 2
Q ss_pred CeeEEEEcCCCccCccCcc-hhhhhcccCccccccCCCCcccccCcc-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 475 RAQNFTIVPSSLLRVKNSG-ALHRTFNVEPLYLRHENSGLAIDYMHW-QIPLSKRFRALKLWFVIRNFGIKGLQKHIREI 552 (943)
Q Consensus 475 ~ADSItiDpHK~L~vr~~~-~L~~af~~~p~YL~~~~~g~~~d~~~~-tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~ 552 (943)
.||.|.-++||.+....+. .|.-........+... |..+.-... -+.|+-|... +-..|..+ .-..+.+++
T Consensus 208 g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S--g~~~~~KEvellGCT~rGap--ivTlmASf--P~V~eRVkr- 280 (382)
T COG1103 208 GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS--GRAFPKKEVELLGCTVRGAP--IVTLMASF--PHVVERVKR- 280 (382)
T ss_pred CCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc--ccccccceeeeecccccCch--HHHHHhcC--HHHHHHHHH-
Confidence 6899999999998822221 1100000111111111 110000011 1234422222 21122222 122344444
Q ss_pred HhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC--CCccE
Q psy11047 553 FSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA--RHLGM 630 (943)
Q Consensus 553 l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~--~~l~i 630 (943)
|+ +.++-|++|.+.+..+.+++-++. -.--+
T Consensus 281 -------------------Wd----------------------------eEv~kaR~fv~elEkigg~~qlG~rPk~HdL 313 (382)
T COG1103 281 -------------------WD----------------------------EEVEKARWFVAELEKIGGVKQLGERPKNHDL 313 (382)
T ss_pred -------------------HH----------------------------HHHHHHHHHHHHHHHhhhHHHhCCCCcccce
Confidence 11 147789999999999988888863 34556
Q ss_pred EEEEecCCChHHH-------HHHHHHhccCcEEEeecccCC-CcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 631 VVIRLLGENILTE-------KLLKRLNSKGRLHCVPASLRI-QGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 631 V~Fr~~g~n~l~~-------~Ll~~L~~~G~~~~s~t~~~g-~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.|--+..+++.+ -|.+.|.++|..-+-+ | ...+.+++ +-.+.|+++..++++++++++
T Consensus 314 m~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~----G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 314 MKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQP----GQTKYFKLSV-YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred eeecCchHHHHHHhCcCCceeeHHHHHhcCcccccc----CceeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 7776654433322 2334455555422211 2 22455533 456889999999999998865
No 199
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.67 E-value=2.6e-06 Score=97.15 Aligned_cols=126 Identities=8% Similarity=0.019 Sum_probs=86.4
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....||.. ++++.|.+. .+++++||.|+..+ +.. + .|| -.
T Consensus 47 ~~~p~~~~Le~~----la~l~g~~~------------al~~~SG~~Al~~~-l~~----l------~pG---------d~ 90 (380)
T PRK06176 47 SGNPTRFALEEL----IADLEGGVK------------GFAFASGLAGIHAV-FSL----F------QSG---------DH 90 (380)
T ss_pred CCChhHHHHHHH----HHHHhCCCC------------EEEECCHHHHHHHH-HHH----c------CCC---------CE
Confidence 456778888875 578888642 47778888776432 221 1 123 23
Q ss_pred EEecCCCchHHHHHH----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|++++..+.+..... ..-+..+..++. .|+++++++++++ +.+|.....++.+|.+-|+++|++
T Consensus 91 Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~- 158 (380)
T PRK06176 91 VLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-----SDLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCAS- 158 (380)
T ss_pred EEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-----CCHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHH-
Confidence 666666665544332 112235555554 3799999888654 567777777888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|++|+..
T Consensus 159 -------------------la~~~gi-------~vivD~t~a~~ 176 (380)
T PRK06176 159 -------------------VAKDHGL-------LTIVDNTFATP 176 (380)
T ss_pred -------------------HHHHcCC-------EEEEECCcccc
Confidence 9999999 99999999754
No 200
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.67 E-value=1.6e-05 Score=89.68 Aligned_cols=138 Identities=9% Similarity=-0.072 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
..+..++.++|+++.|.+ ..+||+||++||..|+.++|...-+ .+. ..+-++.....
T Consensus 80 ~~~~~~la~~l~~~~~~~------------~v~~~~gg~eA~~~al~~a~~~~~~------~~~-----~~~~ii~~~~~ 136 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD------------KVFFCNSGAEANEAAIKLARKYGHK------KGI-----EKPEIITAENS 136 (396)
T ss_pred CHHHHHHHHHHHhhcCCC------------EEEECCCcHHHHHHHHHHHHHHhcc------cCC-----CCCeEEEECCC
Confidence 445556667888887653 4789999999999999998754211 010 01234445555
Q ss_pred CchHHHHHHHHCCccEE---EEecCCCC----CcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc-c---ccHHHhhh
Q psy11047 310 AHSSVEKAGLIGLVNMR---YIESDDKL----SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV-V---DSYCCLGT 378 (943)
Q Consensus 310 aHySv~KAa~LG~~~v~---~Vp~D~~g----rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa-I---DpL~eIa~ 378 (943)
-|-+..-+..++..... ..+..... .-|+++|++.+..+ +.+|+..-....+|. + +.+++|.+
T Consensus 137 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~vii~p~~~~~G~~~~~~~~l~~l~~ 210 (396)
T PRK02627 137 FHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDK------TAAVMLEPIQGEGGVNPADKEYLQALRE 210 (396)
T ss_pred cCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCC------eEEEEEecccCCCCCccCCHHHHHHHHH
Confidence 66444333333321111 11111110 11789999888432 445555443344452 2 23788888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.+|.++
T Consensus 211 --------------------l~~~~~~-------~lI~DE~~~g~ 228 (396)
T PRK02627 211 --------------------LCDENGI-------LLILDEVQTGM 228 (396)
T ss_pred --------------------HHHHcCC-------EEEEechhcCC
Confidence 9999999 99999999876
No 201
>PRK06348 aspartate aminotransferase; Provisional
Probab=98.66 E-value=2.3e-05 Score=88.75 Aligned_cols=159 Identities=13% Similarity=0.003 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.++..++....+. ...|.......++...+.+|+.+..|++-. ....++|+|+++++..++.+. +
T Consensus 44 ~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~--------~~~i~it~G~~~al~~~~~~~----~ 110 (384)
T PRK06348 44 DESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDLSFK--------RNEIMATVGACHGMYLALQSI----L 110 (384)
T ss_pred CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCC--------hhhEEEcCChHHHHHHHHHHh----c
Confidence 344554454433322 223433333457888888888887776532 136889999999987666542 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEe
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaT 361 (943)
.+| ..|++.+-++.....++..-+..++.++.+ +.+.+|+++|++.++.. +.+|+.+
T Consensus 111 ------~~g---------d~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~ 169 (384)
T PRK06348 111 ------DPG---------DEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSK------TKAIILN 169 (384)
T ss_pred ------CCC---------CEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcC------ccEEEEe
Confidence 122 236667777776777775333467788763 34579999999988643 3444555
Q ss_pred cCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 362 LALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 362 aGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
...+-+|.+-+ +++|.+ +|++||+ ++.+|.+|+.+
T Consensus 170 ~p~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 207 (384)
T PRK06348 170 SPNNPTGAVFSKETLEEIAK--------------------IAIEYDL-------FIISDEVYDGF 207 (384)
T ss_pred CCCCCCCcCCCHHHHHHHHH--------------------HHHHCCe-------EEEEecccccc
Confidence 56777888755 667777 8999999 99999999876
No 202
>PRK07908 hypothetical protein; Provisional
Probab=98.66 E-value=1.2e-05 Score=89.45 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++.+|.+.+ ..++|+|+++++..++. +. ++ + +++. .-+....
T Consensus 62 ~lr~aia~~~~~~~~----------~I~it~Ga~~al~~~~~------l~------~~--------~-viv~-~P~y~~~ 109 (349)
T PRK07908 62 RARAAVAARHGRTPD----------EVLLLAGAAEGFALLAR------LR------PR--------R-AAVV-HPSFTEP 109 (349)
T ss_pred HHHHHHHHHhCcChh----------hEEECCCHHHHHHHHHh------cC------CC--------e-EEEe-CCCChHH
Confidence 456777888887654 68999999999765433 11 11 1 2222 2222223
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.+|+++++.+|++++. .. +.+++.+..++.||.+-|.++|.+
T Consensus 110 ~~~~~~~G~~i~~v~~~~~~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~---------------- 163 (349)
T PRK07908 110 EAALRAAGIPVHRVVLDPPFRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLA---------------- 163 (349)
T ss_pred HHHHHHcCCEEEeeccCcccCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHH----------------
Confidence 3444433458888999877889988542 11 446667788899999999999998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+ ++. |+.+|.+|+-+
T Consensus 164 ----l~~-~~~-------~iIvDe~y~~~ 180 (349)
T PRK07908 164 ----LRR-PGR-------ILVVDEAFADA 180 (349)
T ss_pred ----HHh-cCC-------EEEEECcchhh
Confidence 886 477 89999999754
No 203
>KOG0628|consensus
Probab=98.66 E-value=1.1e-08 Score=116.21 Aligned_cols=133 Identities=35% Similarity=0.475 Sum_probs=105.7
Q ss_pred CCCcCHHHHHHHHHHhhccCCCcEEEEEec----CCCccc--ccccHHHhhhh-ccccccccccccccCchH-----HHH
Q psy11047 333 KLSLRGDKLIEAIERDKKKHLIPFFIFSGL----ALPAFL--VVDSYCCLGTA-MIVKGLGFYKMKLQTNFP-----NFI 400 (943)
Q Consensus 333 ~grmD~daLe~aI~~d~~kG~~P~~VVaTa----GTT~tG--aIDpL~eIa~~-~~~~d~~~~~i~L~RrfR-----~ia 400 (943)
++-|++.+-.+.+..+.+++...-+-|..+ |+..+. .+||+.--.+. ....||+.|+++|+|||| ++.
T Consensus 285 r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~ 364 (511)
T KOG0628|consen 285 RYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVL 364 (511)
T ss_pred HHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHH
Confidence 456777777788888988886444444443 544443 56997755544 357999999999999999 678
Q ss_pred HHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccc
Q psy11047 401 LSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 401 r~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~ 465 (943)
|-||+++ +++.+.-+...-..+.+.||+++++.+|+||||+++.|++|++|++++|.+|++++.+
T Consensus 365 R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~ 435 (511)
T KOG0628|consen 365 RSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVP 435 (511)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEE
Confidence 8899886 5677777777777777799999999999999999999999999999999999997654
No 204
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.66 E-value=2.5e-05 Score=88.26 Aligned_cols=112 Identities=10% Similarity=-0.043 Sum_probs=76.4
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC-CCC-C-c
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKL-S-L 336 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D-~~g-r-m 336 (943)
..++|+|||+++..++.+. + .+| + .|++++-.+......+...+.+++.++.+ ++| . .
T Consensus 90 ~i~~t~G~~~al~~~~~~l----~------~~g--------d-~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~ 150 (397)
T PRK07568 90 EILITNGGSEAILFAMMAI----C------DPG--------D-EILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLP 150 (397)
T ss_pred eEEEcCChHHHHHHHHHHh----c------CCC--------C-EEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCC
Confidence 5789999999987665432 1 122 1 35555544433344444334578888876 344 3 2
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchh
Q psy11047 337 RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 413 (943)
Q Consensus 337 D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lw 413 (943)
+.++|+++++.. +.+|+.+..++.+|.+-+ +++|++ +|+++|+ +
T Consensus 151 ~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~--------------------~~~~~~~-------~ 197 (397)
T PRK07568 151 SKEEIEKLITPK------TKAILISNPGNPTGVVYTKEELEMLAE--------------------IAKKHDL-------F 197 (397)
T ss_pred CHHHHHHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHHH--------------------HHHHCCc-------E
Confidence 578888887643 456777777888998865 777888 9999999 9
Q ss_pred hhHHhhhcCC
Q psy11047 414 QKFEALVLGD 423 (943)
Q Consensus 414 LHVDAA~GG~ 423 (943)
+++|.+|+.+
T Consensus 198 ii~De~y~~~ 207 (397)
T PRK07568 198 LISDEVYREF 207 (397)
T ss_pred EEEeccchhc
Confidence 9999999866
No 205
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.65 E-value=5.9e-06 Score=93.50 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=94.4
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...++| +++++.+|.+ ..++|+|||.|+..++.+.- + .+| -.|+
T Consensus 30 ~~~~~~~e----~~la~~~g~~------------~~v~~~sgt~al~~~l~~~~---~------~~G---------d~Vi 75 (375)
T PRK11706 30 GGFTRRCQ----QWLEQRFGSA------------KVLLTPSCTAALEMAALLLD---I------QPG---------DEVI 75 (375)
T ss_pred CHHHHHHH----HHHHHHhCCC------------eEEEECCHHHHHHHHHHHhC---C------CCC---------CEEE
Confidence 44445554 4667777764 47899999999766654320 0 122 3478
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCCC-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
++..+|.+...++...+.+++.+++|.+ +.+|+++++++++.. +.+|+.+ ..+|..-++++|.+
T Consensus 76 v~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~------tk~i~~~---~~~G~~~~~~~i~~------ 140 (375)
T PRK11706 76 MPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPK------TRAIVPV---HYAGVACEMDTIMA------ 140 (375)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCC------CeEEEEe---CCCCCccCHHHHHH------
Confidence 8899999998888654457888888765 489999999998653 4455544 34788888999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|+|++.+
T Consensus 141 --------------la~~~~i-------~vIeD~a~a~g 158 (375)
T PRK11706 141 --------------LAKKHNL-------FVVEDAAQGVM 158 (375)
T ss_pred --------------HHHHcCC-------EEEEECccccc
Confidence 9999999 99999999755
No 206
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=98.65 E-value=1.7e-05 Score=89.36 Aligned_cols=136 Identities=12% Similarity=0.036 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..++-..+.+|+++..|.+... ....++|+|++++...++.+. . .+| ..|++.+
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~-------~~~vi~t~G~~~~l~~~~~~~----~------~~g---------d~vlv~~ 122 (383)
T TIGR03540 69 MLAYRQAVADWYKRRFGVELDP-------ETEVLSLIGSKEGIAHIPLAF----V------NPG---------DIVLVPD 122 (383)
T ss_pred CHHHHHHHHHHHHHhhCCCCCC-------CCeEEECCCcHHHHHHHHHHh----C------CCC---------CEEEEeC
Confidence 4567778888888887875320 013578899999876654431 1 122 2466666
Q ss_pred CCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
-++.....++...+.+++.+|.+++ ..+|++++++.+..+ +.+|+.+...+-+|.+-+ +++|.+
T Consensus 123 P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~~----- 191 (383)
T TIGR03540 123 PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELVE----- 191 (383)
T ss_pred CCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHHH-----
Confidence 6665556666443458889998643 567999999887542 556666667888998877 667777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+..
T Consensus 192 ---------------~a~~~~~-------~ii~De~y~~l 209 (383)
T TIGR03540 192 ---------------FAKEYNI-------IVCHDNAYSEI 209 (383)
T ss_pred ---------------HHHHcCE-------EEEEecchhhh
Confidence 9999999 99999999754
No 207
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.65 E-value=2.6e-06 Score=96.48 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|..+ |++. .+ ..+++++||+|+..++.+- + .+| ..|
T Consensus 49 ~~p~~~~Le~~l----A~l~--~~-----------~~v~~~sG~~Ai~~~l~al----l------~~G---------d~V 92 (366)
T PRK07582 49 SNPTWRALEAAL----GELE--GA-----------EALVFPSGMAAITAVLRAL----L------RPG---------DTV 92 (366)
T ss_pred CCccHHHHHHHH----HHHc--CC-----------CEEEECCHHHHHHHHHHHh----c------CCC---------CEE
Confidence 456777777754 5555 22 4688899998876665431 1 122 246
Q ss_pred EecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++++..++.....+. + .+.+++.++.++.+. .+.. .+.+|....-++.+|.+.|+++|++
T Consensus 93 l~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~--------~~~~------~t~lV~le~p~NPtg~v~di~~I~~-- 156 (366)
T PRK07582 93 VVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE--------AALA------GADLVLAETPSNPGLDVCDLAALAA-- 156 (366)
T ss_pred EEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH--------Hhcc------CceEEEEECCCCCCCCccCHHHHHH--
Confidence 667777766655441 2 234778887654321 1111 1456666666777888889999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|+++|+ ++.||++|+.
T Consensus 157 ------------------~a~~~g~-------~lvVD~t~~~ 173 (366)
T PRK07582 157 ------------------AAHAAGA-------LLVVDNTTAT 173 (366)
T ss_pred ------------------HHHHcCC-------EEEEECCCCC
Confidence 9999999 9999999864
No 208
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=98.65 E-value=9e-06 Score=92.02 Aligned_cols=121 Identities=9% Similarity=-0.120 Sum_probs=74.5
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEE---EecCCCCC-
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRY---IESDDKLS- 335 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~---Vp~D~~gr- 335 (943)
..+|++|||+||..|+.+||.+... +|.+ ..+-++.....-|-+..-+..++...... .|..++..
T Consensus 90 ~v~~~~sGseA~~~al~~ar~~~~~------~G~~----~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
T PRK01278 90 KVFFTNSGAEAVECAIKTARRYHYG------KGHP----ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQ 159 (389)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHh------cCCC----CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceE
Confidence 4799999999999999999875322 2311 02235555666666555454443321110 11111111
Q ss_pred ---cCHHHHHHHHHHhhccCCCcEEEEEecCCCccc-cc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCC
Q psy11047 336 ---LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL-VV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 408 (943)
Q Consensus 336 ---mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG-aI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~ 408 (943)
.|++++++.|..+ +.+|+..--....| .+ +.+++|.+ +|++||+
T Consensus 160 ~~~~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~--------------------l~~~~g~--- 210 (389)
T PRK01278 160 VPFGDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQ--------------------LCDENGL--- 210 (389)
T ss_pred eCCCCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHH--------------------HHHHcCC---
Confidence 4789999888642 44555543333334 22 45888888 9999999
Q ss_pred ccchhhhHHhhhcCC
Q psy11047 409 SVRLAQKFEALVLGD 423 (943)
Q Consensus 409 ~l~lwLHVDAA~GG~ 423 (943)
|+.+|.+|.|+
T Consensus 211 ----~lI~DEv~~g~ 221 (389)
T PRK01278 211 ----LLIFDEVQCGM 221 (389)
T ss_pred ----EEEEeccccCC
Confidence 99999999876
No 209
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=98.64 E-value=2.7e-05 Score=87.19 Aligned_cols=125 Identities=12% Similarity=0.039 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+++++|+.+|.+.+ ..++|+|++++...++.+ +. + ++ +++.+ -+...
T Consensus 58 ~~lr~~ia~~~~~~~~----------~i~it~Ga~~~l~~~~~~-----l~------~--------g~-viv~~-P~y~~ 106 (356)
T PRK08056 58 RHLHQALARHHQVPAS----------WILAGNGETESIFAVVSG-----LK------P--------RR-AMIVT-PGFAE 106 (356)
T ss_pred HHHHHHHHHHhCcChh----------hEEECCCHHHHHHHHHHH-----hC------C--------CC-EEEeC-CCcHH
Confidence 3567788888888654 678999999987655442 11 1 12 23333 22223
Q ss_pred HHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFY 388 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~ 388 (943)
....+..-+.+++.+|.++. ..+| +++.+.+.. .+.+|+.+...+-||.+-+ +++|++
T Consensus 107 ~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~---------- 169 (356)
T PRK08056 107 YRRALQQVGCEIRRYSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAE---------- 169 (356)
T ss_pred HHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHH----------
Confidence 34445444458888888643 3444 344444432 2456667788899999877 777788
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+-+|.+|..+
T Consensus 170 ----------~a~~~~~-------~ii~De~y~~~ 187 (356)
T PRK08056 170 ----------RCKSLNI-------ALILDEAFIDF 187 (356)
T ss_pred ----------HHHhcCC-------EEEEecchhcc
Confidence 9999999 99999999765
No 210
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.64 E-value=4.9e-06 Score=94.73 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=86.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|.. +|++.|.+. .+++++|+.++..++ . .+ .+| -.
T Consensus 47 ~~~p~~~~Le~~----lA~l~g~~~------------~~~~~sG~aai~~~~-~----~l------~~G---------d~ 90 (377)
T PRK07671 47 TGNPTRAALEEL----IAVLEGGHA------------GFAFGSGMAAITAVM-M----LF------SSG---------DH 90 (377)
T ss_pred CCChHHHHHHHH----HHHHhCCCc------------eEEeCCHHHHHHHHH-H----Hh------CCC---------CE
Confidence 346777777764 578888642 477888876654332 1 11 122 23
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++...|.+..+.. . + .+..++.++. .|+++++++|+++ +.+|+...-++.+|.+.|+++|.+
T Consensus 91 Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~~------tklV~le~P~NPtg~~~dl~~I~~- 158 (377)
T PRK07671 91 VILTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRPN------TKAIYVETPTNPLLKITDIKKIST- 158 (377)
T ss_pred EEECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHH-
Confidence 667777776554432 1 2 2235666654 3789999988754 567777777888899999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.+|.+|+..
T Consensus 159 -------------------la~~~g~-------~lvvD~a~~~~ 176 (377)
T PRK07671 159 -------------------IAKEKGL-------LTIVDNTFMTP 176 (377)
T ss_pred -------------------HHHHcCC-------EEEEECCCCcc
Confidence 9999999 99999999754
No 211
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.63 E-value=8.7e-06 Score=90.33 Aligned_cols=118 Identities=11% Similarity=-0.081 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
..+.+++++++|.+.+ ..++|+|++++...+ ..+ +. + . .|++.+-++.+
T Consensus 50 ~~lr~~la~~~~~~~~----------~i~~t~G~~~~i~~~-~~~----l~------~---------g-~vl~~~p~y~~ 98 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA----------SVLPVNGAQEAIYLL-PRL----LA------P---------G-RVLVLAPTYSE 98 (330)
T ss_pred HHHHHHHHHHhCCChh----------hEEECCCHHHHHHHH-HHH----hC------C---------C-eEEEeCCCcHH
Confidence 4566788888887643 578999999886542 221 11 1 1 25556667777
Q ss_pred HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i 390 (943)
....+...+.+++.++ |++++++.+.+ +.+++.+...+.+|.+-+ +++|.+
T Consensus 99 ~~~~~~~~g~~~~~~~-------d~~~l~~~~~~-------~~~v~i~~p~NPtG~~~~~~~~~~l~~------------ 152 (330)
T TIGR01140 99 YARAWRAAGHEVVELP-------DLDRLPAALEE-------LDVLVLCNPNNPTGRLIPPETLLALAA------------ 152 (330)
T ss_pred HHHHHHHcCCEEEEeC-------CHHHHHhhccc-------CCEEEEeCCCCCCCCCCCHHHHHHHHH------------
Confidence 7776654444666666 78888887732 235666777889999877 555666
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++++|.+|+.+
T Consensus 153 --------~a~~~~~-------~ii~De~y~~~ 170 (330)
T TIGR01140 153 --------RLRARGG-------WLVVDEAFIDF 170 (330)
T ss_pred --------HhHhcCC-------EEEEECccccc
Confidence 8899999 99999999866
No 212
>PRK05942 aspartate aminotransferase; Provisional
Probab=98.63 E-value=4.8e-05 Score=86.42 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec
Q psy11047 228 ACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307 (943)
Q Consensus 228 aateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S 307 (943)
...++...+.+|+.+.+|.+-.. ....++|+|++++...++.+. + .+| -.|+++
T Consensus 74 G~~~lr~aia~~~~~~~~~~~~~-------~~~i~vt~G~~~al~~~~~~~----~------~~g---------d~Vlv~ 127 (394)
T PRK05942 74 GTASFRQAITDWYHRRYGVELDP-------DSEALPLLGSKEGLTHLALAY----V------NPG---------DVVLVP 127 (394)
T ss_pred CCHHHHHHHHHHHHHHHCCCcCC-------CCeEEEccChHHHHHHHHHHh----C------CCC---------CEEEEc
Confidence 34678888999998888865320 013678999999987665431 1 122 236667
Q ss_pred CCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 308 DQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 308 ~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
+-++.....++...+.+++.++.+. .+.+|+++|++.+... +.+++.+...+-||.+-+ +++|.+
T Consensus 128 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~~---- 197 (394)
T PRK05942 128 SPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIVA---- 197 (394)
T ss_pred CCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHHH----
Confidence 7777766666644334788888864 3579999999988642 556666667888999877 667777
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+-+
T Consensus 198 ----------------~a~~~~~-------~iI~De~y~~~ 215 (394)
T PRK05942 198 ----------------FARKYEI-------MLVHDLCYAEL 215 (394)
T ss_pred ----------------HHHHcCe-------EEEEeccchhh
Confidence 8999999 99999999755
No 213
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=98.62 E-value=2.6e-05 Score=87.71 Aligned_cols=128 Identities=9% Similarity=-0.021 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
.+++..+.+++++..+.+ ..+|+++|++||..|+..||.. +| .+-++.....
T Consensus 70 ~~~~~~la~~l~~~~~~~------------~~~~~~sG~~a~~~A~~~a~~~---------~g-------~~~vi~~~~~ 121 (377)
T PRK02936 70 NSLQEEVASLLAENSAGD------------LVFFCNSGAEANEAALKLARKH---------TG-------KSKIVTFEQS 121 (377)
T ss_pred CHHHHHHHHHHHhcCCCC------------EEEEeCCcHHHHHHHHHHHHHh---------cC-------CCeEEEECCC
Confidence 566667777777765432 4789999999999999988743 11 2234555566
Q ss_pred CchHHHHHHHH-CCc-----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc----cH
Q psy11047 310 AHSSVEKAGLI-GLV-----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD----SY 373 (943)
Q Consensus 310 aHySv~KAa~L-G~~-----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID----pL 373 (943)
-|-+..-+..+ |.. .+..++.+ |.++|++.+..+ +.+|+........|.+. .+
T Consensus 122 ~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l 190 (377)
T PRK02936 122 FHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFL 190 (377)
T ss_pred cCCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHH
Confidence 77655444432 211 12223322 688888887533 34455444344445443 38
Q ss_pred HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 374 CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 374 ~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++|.+ +|++||+ ++.+|.+|.|+
T Consensus 191 ~~l~~--------------------l~~~~~~-------~lI~DEv~~g~ 213 (377)
T PRK02936 191 QEVQT--------------------LCKKFGA-------LLIIDEVQTGI 213 (377)
T ss_pred HHHHH--------------------HHHHcCC-------EEEEeccccCC
Confidence 88888 9999999 99999999765
No 214
>PLN02187 rooty/superroot1
Probab=98.62 E-value=2.6e-05 Score=91.15 Aligned_cols=138 Identities=5% Similarity=-0.065 Sum_probs=94.2
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.+...++...+.+|+.+-.|++-. ....++|+|++++...++.+- . .|| + .|+
T Consensus 107 ~~G~~~lR~aiA~~~~~~~~~~~~--------~~~I~it~G~~~al~~~~~~l----~------~pG--------d-~Vl 159 (462)
T PLN02187 107 GAGILPARRAVADYMNRDLPHKLT--------PEDIFLTAGCNQGIEIVFESL----A------RPN--------A-NIL 159 (462)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCC--------cccEEEeCCHHHHHHHHHHHh----c------CCC--------C-EEE
Confidence 333455666666777666555322 136889999999987766542 1 133 1 245
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
+.+-+.......+..-+.+++.++.. +++.+|+++|+++++.. +.+++.+..++-+|.+-+ +++|.+
T Consensus 160 v~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~-- 231 (462)
T PLN02187 160 LPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAE-- 231 (462)
T ss_pred EeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHH--
Confidence 55555555555554433477788763 56899999999887543 556777777899999866 677777
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+-+|.+|+..
T Consensus 232 ------------------~a~~~~i-------~iI~DE~Y~~l 249 (462)
T PLN02187 232 ------------------TARKLGI-------MVISDEVYDRT 249 (462)
T ss_pred ------------------HHHHCCC-------EEEEecccccc
Confidence 8999999 99999999865
No 215
>PLN02242 methionine gamma-lyase
Probab=98.61 E-value=6.7e-06 Score=95.01 Aligned_cols=126 Identities=8% Similarity=-0.040 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...+||.. +|++.|.+. .++|+||++|+..++.+.- .+| -.|
T Consensus 74 ~~Pt~~~LE~~----lA~l~g~~~------------~l~~~sG~~Ai~~al~al~----------~~G---------D~V 118 (418)
T PLN02242 74 FNPTVLNLGRQ----MAALEGTEA------------AYCTASGMSAISSVLLQLC----------SSG---------GHV 118 (418)
T ss_pred CChhHHHHHHH----HHHHhCCCe------------EEEEccHHHHHHHHHHHHh----------CCC---------CEE
Confidence 46888888874 578888753 5799999999988876531 122 235
Q ss_pred EecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...+......+ .+-+..++.++.+ |+++++++|+.. .+.+|+...-++.+|.+-|+++|++
T Consensus 119 l~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~- 187 (418)
T PLN02242 119 VASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELAR- 187 (418)
T ss_pred EEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHH-
Confidence 56666544444433 1122345545442 789999888652 2567777778888999999999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ |+++|.+|+.
T Consensus 188 -------------------la~~~gi-------~livDea~~~ 204 (418)
T PLN02242 188 -------------------IAHEKGV-------TVVVDNTFAP 204 (418)
T ss_pred -------------------HHHHhCC-------EEEEECCCCc
Confidence 9999999 9999999953
No 216
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.61 E-value=3.2e-05 Score=88.92 Aligned_cols=138 Identities=9% Similarity=-0.025 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 227 PACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
....++-..+.+|+.+..|+. -.. ....++|+|++++...++.+- . .+| + .|+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~-------~~~I~it~Gs~~al~~~~~~~----~------~~g--------d-~Vl 134 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDP-------VTEVIHSIGSKPALAMLPSCF----I------NPG--------D-VTL 134 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCC-------cceEEEccCHHHHHHHHHHHh----C------CCC--------C-EEE
Confidence 445667777888888777764 210 015889999999976655431 1 122 2 344
Q ss_pred ecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 306 CSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 306 ~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
+..-++......+..-+.+++.++.++ .+.+|++++++.+... +.+|+.+-..+-||.+-+ +++|.+
T Consensus 135 v~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~-- 206 (410)
T PRK06290 135 MTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVD-- 206 (410)
T ss_pred EeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHH--
Confidence 445455445555544334888999875 4577999999887542 556777777899999877 456666
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+..
T Consensus 207 ------------------la~~~~~-------~iI~DEaY~~~ 224 (410)
T PRK06290 207 ------------------FAKENNI-------IVVQDAAYAAL 224 (410)
T ss_pred ------------------HHHHcCe-------EEEEecchhhc
Confidence 8999999 99999999865
No 217
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.61 E-value=1.7e-06 Score=98.05 Aligned_cols=127 Identities=8% Similarity=-0.016 Sum_probs=84.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
....|...++|+.+ |++.|.. ..++++||++|+..++. + ++ +| +
T Consensus 50 R~~~p~~~~le~~l----A~leg~~------------~~v~~~sG~aAi~~~l~-~----l~------~G--------D- 93 (364)
T PRK07269 50 RTKNPTRAKLEETL----AAIESAD------------YALATSSGMSAIVLAFS-V----FP------VG--------S- 93 (364)
T ss_pred CCCCccHHHHHHHH----HHHhCCC------------eEEEeCCHHHHHHHHHH-H----hC------CC--------C-
Confidence 34568888888755 5666642 57999999999887763 2 11 23 2
Q ss_pred EEEecCCCchHHHHHH-HH-CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 303 VAYCSDQAHSSVEKAG-LI-GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 303 vV~~S~~aHySv~KAa-~L-G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
.|+++...+-....-. .. -...+ .. .+.+|+++++++|+++ +.+|+....++.+|.+-|+++|++
T Consensus 94 ~VI~~~~~yg~~~~~~~~~~~~~~~---~~--~~~~d~~~l~~~i~~~------TklV~lesP~NPtg~~~di~~I~~-- 160 (364)
T PRK07269 94 KVVAVRDLYGGSFRWFNQQEKEGRF---HF--TYANTEEELIAAIEED------TDIVYIETPTNPLMVEFDIEKVAK-- 160 (364)
T ss_pred EEEEecCCcCchHHHHHHHHhcCcE---EE--EecCCHHHHHHhcCcC------ceEEEEECCCCCCCeeeCHHHHHH--
Confidence 2444444332222211 11 11111 11 1235789999998754 568888888888999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+..
T Consensus 161 ------------------la~~~gi-------~vvvD~t~~~~ 178 (364)
T PRK07269 161 ------------------LAHAKGA-------KVIVDNTFYSP 178 (364)
T ss_pred ------------------HHHHcCC-------EEEEECCCccc
Confidence 9999999 99999998654
No 218
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=98.61 E-value=1.3e-05 Score=91.16 Aligned_cols=131 Identities=13% Similarity=-0.013 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
+..+.|+++.+.+ ...|+++||+||..||.+||.+.... .|.. ...+-+|.+...-|-+.
T Consensus 86 ~l~~~l~~~~~~~------------~~~~~~SGseA~e~Alk~a~~~~~~~-----~g~~---~~r~~ii~~~~~~HG~~ 145 (396)
T PRK04073 86 PWYEKVAKLTGKD------------MVLPMNTGAEAVETAIKAARRWAYDV-----KGVE---PNKAEIIACEGNFHGRT 145 (396)
T ss_pred HHHHHHHhcCCCC------------eEEEcCChHHHHHHHHHHHHHHhhhc-----cCCC---CCCCEEEEECCCcCCCC
Confidence 3445566666542 46899999999999999998652210 1110 00223455556667655
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
.-++.+... .+..++.+ |+++|++.+... +.+|+..-..+.+|.+-| +++|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l~~ 214 (396)
T PRK04073 146 MAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAARE 214 (396)
T ss_pred HHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHHHH
Confidence 544433211 12333332 688888887532 566676666667787744 788888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|.+|.|+
T Consensus 215 --------------------l~~~~g~-------lli~DEv~~g~ 232 (396)
T PRK04073 215 --------------------LCKEENV-------LFIADEIQTGL 232 (396)
T ss_pred --------------------HHHHcCC-------EEEEecchhCC
Confidence 9999999 99999999876
No 219
>PRK07683 aminotransferase A; Validated
Probab=98.61 E-value=3.1e-05 Score=87.78 Aligned_cols=159 Identities=13% Similarity=0.003 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+...+..+...|...+...+++..+.+|+.+..|.+-.. ....++|+|+|+|+..++.+. +
T Consensus 44 ~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~-------~~~I~~t~G~~~al~~~~~~l----~-- 110 (387)
T PRK07683 44 SHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP-------ESEIIVTIGASEAIDIAFRTI----L-- 110 (387)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEeCChHHHHHHHHHHh----C--
Confidence 344455555555444445444556788888888888777764220 125899999999987665431 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL 364 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT 364 (943)
.+| ..|+++.-+......++..-+.+++.++.++ ...+|.+++++.+... +.+++.+...
T Consensus 111 ----~~g---------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~i~i~~p~ 171 (387)
T PRK07683 111 ----EPG---------TEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEK------TRCVVLPYPS 171 (387)
T ss_pred ----CCC---------CEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcC------ceEEEEeCCC
Confidence 122 2355555544445555543334788888865 4567889999887643 4566667778
Q ss_pred Cccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 365 PAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 365 T~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+-+|.+-+ +++|.+ +|+++|+ ++.+|.+|+.+
T Consensus 172 NPtG~~~s~~~~~~l~~--------------------~~~~~~~-------~ii~De~y~~~ 206 (387)
T PRK07683 172 NPTGVTLSKEELQDIAD--------------------VLKDKNI-------FVLSDEIYSEL 206 (387)
T ss_pred CCCCcCCCHHHHHHHHH--------------------HHHHcCe-------EEEEecccccc
Confidence 88998744 777787 9999999 99999999865
No 220
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=98.61 E-value=1.5e-05 Score=89.80 Aligned_cols=115 Identities=6% Similarity=-0.073 Sum_probs=73.6
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEE------EEecCCC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMR------YIESDDK 333 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~------~Vp~D~~ 333 (943)
-.+|+++|||||..|+..||... + .+-+|.....-|-+...++.++..... .++....
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~~---------~-------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKAT---------G-------KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSY 149 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHhc---------C-------CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEE
Confidence 36899999999999999998531 1 223555667788777666543221100 0110000
Q ss_pred C-CcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCC
Q psy11047 334 L-SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 408 (943)
Q Consensus 334 g-rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~ 408 (943)
. ..|.+++++.+..+ +.+|+.......+|.+-| +.++.+ +|+++|+
T Consensus 150 ~~~~dl~~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~--------------------l~~~~~~--- 200 (375)
T PRK04260 150 AIFNDLNSVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALAD--------------------YCQETGI--- 200 (375)
T ss_pred eCCCCHHHHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHH--------------------HHHHcCC---
Confidence 0 23788888877532 345555444445566533 888888 9999999
Q ss_pred ccchhhhHHhhhcCC
Q psy11047 409 SVRLAQKFEALVLGD 423 (943)
Q Consensus 409 ~l~lwLHVDAA~GG~ 423 (943)
++++|.++.|+
T Consensus 201 ----~~i~De~~~g~ 211 (375)
T PRK04260 201 ----LLIVDEVQTGM 211 (375)
T ss_pred ----EEEEechhhCC
Confidence 99999999765
No 221
>PLN02624 ornithine-delta-aminotransferase
Probab=98.61 E-value=6.4e-05 Score=88.29 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
....+.+.|.++|. ++.+. +..++|+..+..+|+++|+++++.|+++...-+.++
T Consensus 395 ~a~~~~~~L~e~GV-~v~p~---~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~~ 449 (474)
T PLN02624 395 SAYDVCLKLKERGL-LAKPT---HDTIIRLAPPLSISEDELQECSKALSDVLEHDLPKL 449 (474)
T ss_pred HHHHHHHHHHhCCe-EEecC---CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888885 55543 457899988889999999999999988866655554
No 222
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=98.60 E-value=3.3e-05 Score=88.21 Aligned_cols=129 Identities=11% Similarity=-0.062 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.|+++++.+ ...|+++||+||..|+.+||.+...+. .++ ++-+|.....-|-+.
T Consensus 81 ~la~~L~~~~~~~------------~~~f~~SGseA~e~Alk~ar~~~~~~~---~~~-------r~~ii~~~~~yHG~~ 138 (397)
T TIGR03246 81 RLAKKLVDATFAD------------KVFFCNSGAEANEAALKLARRYALDKH---GAD-------KSEIVAFKNSFHGRT 138 (397)
T ss_pred HHHHHHHhhCCCC------------EEEEeCCcHHHHHHHHHHHHHHHHhcC---CCC-------CCEEEEECCCcCCcc
Confidence 3444556666542 468999999999999999997532110 011 233455566677765
Q ss_pred HHHHHHCCc------------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc----ccHHHhhh
Q psy11047 315 EKAGLIGLV------------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV----DSYCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~------------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI----DpL~eIa~ 378 (943)
.-+..++.. .+..+|-+ |+++|++.|.+. +.+|+..-.....|.+ +.+++|.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l~~ 207 (397)
T TIGR03246 139 LFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGLRE 207 (397)
T ss_pred HHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHHHH
Confidence 544333221 23333332 689999888532 4455554333333433 33888888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++.+|-++-|+
T Consensus 208 --------------------lc~~~g~-------llI~DEv~tG~ 225 (397)
T TIGR03246 208 --------------------LCDRHNA-------LLIFDEVQTGV 225 (397)
T ss_pred --------------------HHHHcCC-------EEEEechhhcC
Confidence 9999999 99999998665
No 223
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.60 E-value=1.7e-06 Score=99.93 Aligned_cols=145 Identities=12% Similarity=-0.008 Sum_probs=89.3
Q ss_pred cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhc
Q psy11047 219 LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEI 298 (943)
Q Consensus 219 n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i 298 (943)
.-..|..+|...+||..+ +++||++. .++|..|+.++.++..+.- + .+| +++
T Consensus 66 GDD~Y~gdpSv~~Lee~v----ael~G~E~------------alpthqGRgaE~Il~~~~~----~-----~~g---~e~ 117 (467)
T TIGR02617 66 GDEAYSGSRSYYALAESV----KNIFGYQY------------TIPTHQGRGAEQIYIPVLI----K-----KRE---QEK 117 (467)
T ss_pred CCcccccCchHHHHHHHH----HHHhCCce------------EEECCCCchHHHHHHHhhc----c-----ccc---ccc
Confidence 335699999999999866 77899863 6899999999987765421 1 011 110
Q ss_pred C-CceEEEecCCCchHHHHHH-HHCCccEEEEe----------cCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCC-
Q psy11047 299 N-SRLVAYCSDQAHSSVEKAG-LIGLVNMRYIE----------SDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALP- 365 (943)
Q Consensus 299 ~-~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp----------~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT- 365 (943)
. .....+++...|+-..++. .+++...+.++ .+.+|.||++.|+++|++..... +.++..++.++
T Consensus 118 g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~--i~~v~~tlt~N~ 195 (467)
T TIGR02617 118 GLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN--VPYIVATITCNS 195 (467)
T ss_pred cccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCC--ceeeeeeEEEec
Confidence 0 0000133444555443443 46665555543 22479999999999998642211 22333333222
Q ss_pred ccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 366 AFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 366 ~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
.-|.+-| +.++.+ +|++||+ .+|+|||-
T Consensus 196 ~GGqpvslenlr~V~~--------------------la~~~GI-------plhLDgAR 226 (467)
T TIGR02617 196 AGGQPVSLANLKAVYE--------------------IAKKYDI-------PVVMDSAR 226 (467)
T ss_pred CCCEEeCHHHHHHHHH--------------------HHHHcCC-------cEEEEhHH
Confidence 2354544 556666 9999999 99999995
No 224
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.58 E-value=1.9e-05 Score=98.65 Aligned_cols=79 Identities=10% Similarity=-0.040 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
+.+|.++++.|.+ .+++++.++-++.+.+++...+ .+++.+++.++|.. +.. .....+++++.-.+|.+||+.
T Consensus 348 ~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~--~~~i~~~~~~~gi~-l~~---~~~~~i~~s~~E~~t~~di~~ 420 (939)
T TIGR00461 348 HSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGI--SSELLKAAEEFNIN-LRA---VDTTTVGIALDETTTKADVEN 420 (939)
T ss_pred HHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCC--HHHHHHHHHHCCCe-eee---cCCCEEEEEeecCCCHHHHHH
Confidence 5678888888888 7999999888999999884222 57888899888875 332 233579999999999999999
Q ss_pred HHHHHH
Q psy11047 684 DWNEIR 689 (943)
Q Consensus 684 ll~~I~ 689 (943)
+++.+.
T Consensus 421 l~~~~~ 426 (939)
T TIGR00461 421 LLKVFD 426 (939)
T ss_pred HHHHhc
Confidence 999985
No 225
>PRK04311 selenocysteine synthase; Provisional
Probab=98.58 E-value=8.5e-05 Score=87.19 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=83.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+++++|.+ ..+++++|+.|++.++.+ +. +| -.|++|...|+++
T Consensus 131 ~~e~~lA~l~Gae------------~a~vv~sgtaAl~l~l~~-----l~------~G---------deVIvs~~e~~~~ 178 (464)
T PRK04311 131 ALAALLCALTGAE------------DALVVNNNAAAVLLALNA-----LA------AG---------KEVIVSRGELVEI 178 (464)
T ss_pred HHHHHHHHHhCCC------------eEEEECCHHHHHHHHHHH-----hC------CC---------CEEEEcchhhhhc
Confidence 5667889999975 357889999998777632 11 12 2367788777743
Q ss_pred ------HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc--cc--ccccHHHhhhhccccc
Q psy11047 315 ------EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA--FL--VVDSYCCLGTAMIVKG 384 (943)
Q Consensus 315 ------~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~--tG--aIDpL~eIa~~~~~~d 384 (943)
...+...+..++.++. ++..++++++++|+++ +.+|+.++-++. +| ..-|+++|++
T Consensus 179 ggs~~i~~~~~~~G~~l~~v~~--~~~t~~~dle~aI~~~------TklV~~vh~sN~~i~G~~~~~dl~eI~~------ 244 (464)
T PRK04311 179 GGAFRIPDVMRQAGARLVEVGT--TNRTHLRDYEQAINEN------TALLLKVHTSNYRIEGFTKEVSLAELAA------ 244 (464)
T ss_pred CcchhhHHHHHHCCcEEEEECC--CCCCCHHHHHHhcCcc------CeEEEEEcCCCccccccCCcCCHHHHHH------
Confidence 2233333446777765 3456799999999765 456666665553 44 5568999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ .+.+|++.|.
T Consensus 245 --------------lak~~gi-------~vivD~gsG~ 261 (464)
T PRK04311 245 --------------LGKEHGL-------PVVYDLGSGS 261 (464)
T ss_pred --------------HHHHcCC-------eEEEECCCcc
Confidence 9999999 9999997554
No 226
>PRK09105 putative aminotransferase; Provisional
Probab=98.57 E-value=4.6e-05 Score=86.25 Aligned_cols=126 Identities=10% Similarity=-0.069 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++.+++.+|++.+ ..++|+|++++...++.+. . .+| -.|++++-+|...
T Consensus 82 ~Lr~aia~~~~v~~e----------~I~it~Gs~~ai~~~~~~l----~------~~g---------d~Vli~~P~y~~~ 132 (370)
T PRK09105 82 DLRTLFAAQEGLPAD----------HVMAYAGSSEPLNYAVLAF----T------SPT---------AGLVTADPTYEAG 132 (370)
T ss_pred HHHHHHHHHhCcChh----------hEEEcCChHHHHHHHHHHH----c------CCC---------CEEEEeCCChHHH
Confidence 355567788888754 6889999999987766542 1 122 2356667677777
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.++.++++.+|++++++.. . .+.+++.+...+.+|.+-+.+++.+
T Consensus 133 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~------~~~~v~l~nP~NPTG~~~~~~~l~~---------------- 189 (370)
T PRK09105 133 WRAADAQGAPVAKVPLRADGAHDVKAMLAAD-P------NAGLIYICNPNNPTGTVTPRADIEW---------------- 189 (370)
T ss_pred HHHHHHcCCeEEEecCCCCCCCCHHHHHhcC-C------CCCEEEEeCCCCCCCcCcCHHHHHH----------------
Confidence 7777544458889999888899999987652 1 1446666778999999999888877
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. +|. |+.+|.+|..+
T Consensus 190 ----l~~~~~~~~-------~lIvDEaY~~f 209 (370)
T PRK09105 190 ----LLANKPAGS-------VLLVDEAYIHF 209 (370)
T ss_pred ----HHHhCCCCc-------EEEEECchHHh
Confidence 5543 477 99999999543
No 227
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.56 E-value=4.9e-05 Score=86.41 Aligned_cols=156 Identities=9% Similarity=-0.031 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+...++... ..|...+...++...+.+|+.+ .|.+-. ....++|+|||+++..++.+. +
T Consensus 52 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~--------~~~i~~t~G~~~al~~~~~~l----~-- 116 (401)
T TIGR01264 52 EVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIE--------ADDVVLCSGCSHAIEMCIAAL----A-- 116 (401)
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCC--------HHHEEECcChHHHHHHHHHHh----C--
Confidence 34444444444321 1233333445555555555554 232211 125789999999987665532 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| + .|++++-++.....++..-+..++.++++ +++.+|+++|++.+... +.+++.+..
T Consensus 117 ----~~g--------d-~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p 177 (401)
T TIGR01264 117 ----NAG--------Q-NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEK------TAALIVNNP 177 (401)
T ss_pred ----CCC--------C-EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccC------ceEEEEcCC
Confidence 122 2 24555555544555554333477777764 35789999999887643 345666677
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-+|.+-+ +++|.+ +|+++|+ |+.+|.+|+.+
T Consensus 178 ~NPtG~~~~~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 213 (401)
T TIGR01264 178 SNPCGSVFSRQHLEEILA--------------------VAERQCL-------PIIADEIYGDM 213 (401)
T ss_pred CCCCCCCCCHHHHHHHHH--------------------HHHHCCC-------EEEEEhhhhhh
Confidence 888998854 777777 9999999 99999999865
No 228
>PRK08068 transaminase; Reviewed
Probab=98.53 E-value=8.8e-05 Score=84.03 Aligned_cols=156 Identities=7% Similarity=-0.019 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 208 LGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 208 lgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
+.+.+...++... ..|...+...++...+.+|+.+..|.+-. .. ..++|+||+++...++.+ ..
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~--------~~~~i~it~G~~~~l~~~~~~----~~-- 115 (389)
T PRK08068 50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLD--------PETEVAILFGGKAGLVELPQC----LM-- 115 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCccEEEcCCcHHHHHHHHHH----hC--
Confidence 3455555554321 22333344677888888888777786432 12 468899999987665432 11
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.+| -.|++.+-++.....++.+-+.+++.+|+++ ...+|.+++++++... +.+|+.+-.
T Consensus 116 ----~~g---------d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P 176 (389)
T PRK08068 116 ----NPG---------DTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYP 176 (389)
T ss_pred ----CCC---------CEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECC
Confidence 122 2366677777777766654345888899874 3578999999888542 456666666
Q ss_pred CCcccccccH---HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSY---CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL---~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-||.+-+. ++|.+ +|++|++ |+.+|-+|+..
T Consensus 177 ~NPTG~~~s~~~~~~l~~--------------------la~~~~~-------~ii~Deay~~~ 212 (389)
T PRK08068 177 NNPTGAVATKAFFEETVA--------------------FAKKHNI-------GVVHDFAYGAI 212 (389)
T ss_pred CCCCCCcCCHHHHHHHHH--------------------HHHHcCe-------EEEEehhhhhh
Confidence 7889988775 56666 8999999 99999999754
No 229
>PLN02231 alanine transaminase
Probab=98.53 E-value=0.00011 Score=87.67 Aligned_cols=149 Identities=11% Similarity=-0.036 Sum_probs=103.5
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.|..+....++-..+.+|+.+..|++-. ....++|+|++++...++.+-. . .+|
T Consensus 163 ~Y~~s~G~~~lReaIA~~~~~r~g~~~~--------pe~I~iT~Ga~~ai~~~~~~l~----~-----~~g--------- 216 (534)
T PLN02231 163 AYSHSQGIKGLRDAIAAGIEARDGFPAD--------PNDIFLTDGASPAVHMMMQLLI----R-----SEK--------- 216 (534)
T ss_pred CcCCCCCcHHHHHHHHHHHHhccCCCCC--------cccEEEeCCHHHHHHHHHHHhc----c-----CCC---------
Confidence 3555555667777777888777676533 1468999999999877665421 0 112
Q ss_pred eEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 302 ~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
-.|++..-++.....++.+-+..++.++.++ .+.+|+++|+++++....++..+.+++.+-..+-||.+-+ +++|
T Consensus 217 d~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~I 296 (534)
T PLN02231 217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDI 296 (534)
T ss_pred CEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHH
Confidence 1355555555555555544334788888874 3689999999999876555545666666677788998855 5666
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|++||+ |+..|-+|+-.
T Consensus 297 v~--------------------~a~~~~l-------~lI~DEvY~~l 316 (534)
T PLN02231 297 VE--------------------FCKQEGL-------VLLADEVYQEN 316 (534)
T ss_pred HH--------------------HHHHcCC-------EEEEEccchhc
Confidence 77 9999999 99999999865
No 230
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.52 E-value=1.2e-05 Score=93.55 Aligned_cols=126 Identities=10% Similarity=0.121 Sum_probs=93.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|...++|+.+ |++.|.. ..+.|++|+.|+..++.+. + .+| -.|
T Consensus 59 ~nPtv~~lE~~l----a~leg~~------------~av~~~SG~aAi~~al~al----l------~~G---------D~V 103 (432)
T PRK06702 59 GNPTLAAFEQKL----AELEGGV------------GAVATASGQAAIMLAVLNI----C------SSG---------DHL 103 (432)
T ss_pred CCcHHHHHHHHH----HHHhCCC------------cEEEECCHHHHHHHHHHHh----c------CCC---------CEE
Confidence 468889999855 6777653 4689999999999888753 1 123 247
Q ss_pred EecCCCchHHHHH----H-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKA----G-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KA----a-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
+++...+.+.... . .+|. .+..+. ..+|+++++++|+++ +.+|+....++.++.+-|+++|++
T Consensus 104 I~~~~~Y~~T~~~~~~~l~~~Gi-~v~~vd----~~~d~~~l~~~I~~~------Tk~I~~e~pgnP~~~v~Di~~I~~- 171 (432)
T PRK06702 104 LCSSTVYGGTFNLFGVSLRKLGI-DVTFFN----PNLTADEIVALANDK------TKLVYAESLGNPAMNVLNFKEFSD- 171 (432)
T ss_pred EECCCchHHHHHHHHHHHHHCCC-EEEEEC----CCCCHHHHHHhCCcC------CeEEEEEcCCCccccccCHHHHHH-
Confidence 7788877655554 2 2453 566663 347899999999875 456666677788888888999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++-+|.+|+..
T Consensus 172 -------------------iA~~~gi-------~livD~T~~tP 189 (432)
T PRK06702 172 -------------------AAKELEV-------PFIVDNTLATP 189 (432)
T ss_pred -------------------HHHHcCC-------EEEEECCCCch
Confidence 9999999 99999999643
No 231
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.51 E-value=0.00014 Score=83.29 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhccC-ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCLG-FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~alN~n~-~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
..+-+.+..+++... ..|.......++-..+.+|+.+..|++-. ....++|+|++++...++.+- .
T Consensus 52 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~--------~~~I~it~G~~~al~~~~~~l----~- 118 (409)
T PLN00143 52 NIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS--------PDDVYLTLGCKHAAEIIIKVL----A- 118 (409)
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--------HhhEEEecChHHHHHHHHHHH----c-
Confidence 344454555554332 23444444556666777787777666432 136889999999987765532 1
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+| + .|++.+-+.......+.+.+..++.++.+ +++.+|+++|+++++.. +..++.+.
T Consensus 119 -----~~g--------d-~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~n 178 (409)
T PLN00143 119 -----RPE--------A-NILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIIN 178 (409)
T ss_pred -----CCC--------C-EEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEEC
Confidence 122 2 34555555555555555444577888864 35679999999887543 45566666
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+-||.+-+ +.+|.+ +|++|++ |+.+|.+|..+
T Consensus 179 P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 215 (409)
T PLN00143 179 PGNPCGSVYSYEHLNKIAE--------------------TARKLGI-------LVIADEVYGHI 215 (409)
T ss_pred CCCCCCCccCHHHHHHHHH--------------------HHHHcCC-------eEEEEcccccc
Confidence 7889999877 556666 8999999 99999999865
No 232
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.51 E-value=0.00012 Score=82.19 Aligned_cols=138 Identities=12% Similarity=-0.083 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEe
Q psy11047 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~ 306 (943)
+....+...+.+|+.+..|++-. ....++|+|++++...++.+.- .+| + .|++
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~--------~~~I~it~G~~~~l~~~~~~~~----------~~g--------d-~v~v 117 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLT--------VENVWAANGSNEILQQLLQAFG----------GPG--------R-TALG 117 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCC--------hhhEEECCCHHHHHHHHHHHhc----------CCC--------C-EEEE
Confidence 34566777788888887776432 1367899999999866655421 122 2 2444
Q ss_pred cCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccc
Q psy11047 307 SDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 307 S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~ 386 (943)
..-+......++...+.+++.++.++++.+|++++++++.... +.+++.+--.+-+|.+-+.+++.+
T Consensus 118 ~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~-------- 184 (368)
T PRK03317 118 FVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEA-------- 184 (368)
T ss_pred eCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHH--------
Confidence 4545555555555444467777777778999999999987431 334555556677999999999999
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.+++ |+.+|-+|+.+
T Consensus 185 ------------l~~~~~~-------~lI~DE~y~~~ 202 (368)
T PRK03317 185 ------------ILDAAPG-------IVVVDEAYAEF 202 (368)
T ss_pred ------------HHHHCCc-------eEEEeCCchhh
Confidence 8988888 99999999865
No 233
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=98.50 E-value=8.5e-05 Score=83.79 Aligned_cols=129 Identities=8% Similarity=-0.089 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+|+.+|.+.+ ..++|+|++++...++.+. . .+| +..|++++-.+...
T Consensus 63 ~lr~~ia~~~~~~~~----------~I~~t~G~~~~l~~~~~~~----~------~~g--------~~~vlv~~p~y~~~ 114 (364)
T PRK04781 63 GLRSALAALYGCAPE----------QLLIGRGSDEAIDLLVRAL----C------VPG--------RDAVLVTPPVFGMY 114 (364)
T ss_pred HHHHHHHHHhCcChH----------HEEEeCCHHHHHHHHHHHh----c------CCC--------CCeEEEcCCChHHH
Confidence 456667778887654 6889999999976555431 1 111 12355555553334
Q ss_pred HHHHHHCCccEEEEecCC--C-CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDD--K-LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~--~-grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.+|.++ + ..+|++++.+.+... .+.+|+.+..++.+|.+-|.+++.+
T Consensus 115 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~------------- 176 (364)
T PRK04781 115 AVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIER------------- 176 (364)
T ss_pred HHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHH-------------
Confidence 444454445888888742 2 467888886554322 1556666778899999999888877
Q ss_pred ccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. ++. |+.+|.+|+.+
T Consensus 177 -------l~~~~~~~~-------~iI~Deay~~f 196 (364)
T PRK04781 177 -------ALQALQGKA-------LVVVDEAYGEF 196 (364)
T ss_pred -------HHHhCCCCc-------EEEEeCcchhh
Confidence 5553 367 99999999865
No 234
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.50 E-value=0.00012 Score=83.55 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
++.++..+.....+.....|........+-..+.+|+.+..|++-. .. ..++|+|++++...++.+-
T Consensus 48 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~--------~~~~I~it~G~~~al~~~~~~l---- 115 (403)
T PRK08636 48 PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLD--------PETEVVATMGSKEGYVHLVQAI---- 115 (403)
T ss_pred CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC--------CCCeEEECCChHHHHHHHHHHh----
Confidence 3344544443332222233433334567777888899888887532 12 4789999999986665431
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhcc-CCCcEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKK-HLIPFFIF 359 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~k-G~~P~~VV 359 (943)
. .+| -.|++.+-++.....++.+-+.+++.|+.+ +++.+|++++.+.+++..++ ...+.+++
T Consensus 116 ~------~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~ 180 (403)
T PRK08636 116 T------NPG---------DVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVV 180 (403)
T ss_pred C------CCC---------CEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEE
Confidence 1 122 246666666666666665433488888874 45789998776555543322 12367778
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+...+-+|.+-+ +++|.+ +|++|++ |+.+|-+|+..
T Consensus 181 ~~~P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~II~De~Y~~l 220 (403)
T PRK08636 181 VNFPHNPTTATVEKSFYERLVA--------------------LAKKERF-------YIISDIAYADI 220 (403)
T ss_pred EeCCCCCCCccCCHHHHHHHHH--------------------HHHHcCc-------EEEEeccchhh
Confidence 7777888998866 456666 8999999 99999999865
No 235
>PRK06460 hypothetical protein; Provisional
Probab=98.50 E-value=1.5e-05 Score=90.63 Aligned_cols=129 Identities=12% Similarity=-0.002 Sum_probs=82.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
.....|...++|.. +|+++|.+. .+++++|++|+..++.+. + .+| +
T Consensus 40 ~r~~~p~~~~L~~~----lA~l~g~~~------------~v~~~sG~~ai~~~l~al----~------~~G--------d 85 (376)
T PRK06460 40 SREANPTVLELTKK----IVELENAEM------------GVAFSSGMGAISTTALAL----L------KPG--------N 85 (376)
T ss_pred eCCCCccHHHHHHH----HHHHhCCCc------------EEEeCCHHHHHHHHHHHH----h------CCC--------C
Confidence 34456777777764 578888743 456677788876665432 1 122 2
Q ss_pred eEEEecCCC---chH-HHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQA---HSS-VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~a---HyS-v~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
.|+++... -|. +.+.+...+.++..++.++ .+.+++.++. .+.+|+.+..++.+|.+-|+++|.
T Consensus 86 -~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~-----~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~ 153 (376)
T PRK06460 86 -SVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS-----DNIIEKAKSK------RYDVVFVENITNPLLRVVDITELS 153 (376)
T ss_pred -EEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC-----HHHHHHhcCC------CceEEEEECCCCCCCcccCHHHHH
Confidence 24444332 233 2344433233677777643 2333333322 266788888888999999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ ++.+|.+|+..
T Consensus 154 ~--------------------la~~~g~-------~vivDea~~~~ 172 (376)
T PRK06460 154 K--------------------VCKENGS-------ILIVDATFSTP 172 (376)
T ss_pred H--------------------HHHHcCC-------EEEEECCcCcc
Confidence 9 9999999 99999998643
No 236
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=98.48 E-value=0.00011 Score=82.87 Aligned_cols=136 Identities=12% Similarity=0.063 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..++-..+.+|+.+..|++... ....++|+|++++...++.+. + .+| ..|++.+
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~-------~~~ii~t~G~~~~i~~~~~~~----~------~~g---------d~Vl~~~ 124 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDP-------ETEVISLIGSKEGIAHIPLAF----V------NPG---------DVVLVPD 124 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCC-------CCcEEEccCcHHHHHHHHHHh----C------CCC---------CEEEEcC
Confidence 4566677778888777764220 013678899999986654431 1 122 2355666
Q ss_pred CCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
-++.....++..-+.+++.++.+. .+.+|++++++.+... +.+|+.+...+-||.+-+ +++|.+
T Consensus 125 P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~----- 193 (385)
T PRK09276 125 PGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVVD----- 193 (385)
T ss_pred CCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHHH-----
Confidence 666656666654344788888864 3568999998877532 556676667888998866 567777
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+.+
T Consensus 194 ---------------~~~~~~~-------~ii~De~y~~~ 211 (385)
T PRK09276 194 ---------------FAKKYDI-------IVCHDAAYSEI 211 (385)
T ss_pred ---------------HHHHCCc-------EEEEecchhhe
Confidence 8999999 99999999865
No 237
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=98.47 E-value=7.4e-05 Score=84.22 Aligned_cols=127 Identities=10% Similarity=-0.017 Sum_probs=91.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++++++.+|++.+ ..++|+|++++....+.+. . .+| ..|++..-++...
T Consensus 75 ~lr~~ia~~~~~~~~----------~i~~t~G~~~~l~~~~~~~----~------~~g---------d~vli~~P~y~~~ 125 (371)
T PRK05166 75 ALREAIAARTGVPAD----------RIILGNGSEDLIAVICRAV----L------RPG---------DRVVTLYPSFPLH 125 (371)
T ss_pred HHHHHHHHHhCcCHH----------HEEEcCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCChHHH
Confidence 466778888888653 6899999999875544321 1 122 2355666666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
...+..-+.+++.++.++++.+|.+++++.++.. +.+|+.+...+.+|.+-|.+++.+
T Consensus 126 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~---------------- 183 (371)
T PRK05166 126 EDYPTMMGARVERVTVTPDLGFDLDALCAAVARA------PRMLMFSNPSNPVGSWLTADQLAR---------------- 183 (371)
T ss_pred HHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 6666443458889999888999999999988653 456667888899999988877776
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. .+. ++.+|.+|+-+
T Consensus 184 ----l~~~~~~~~-------~ii~De~y~~~ 203 (371)
T PRK05166 184 ----VLDATPPET-------LIVVDEAYAEY 203 (371)
T ss_pred ----HHHhCCCCc-------EEEEECcHHHh
Confidence 5543 367 89999999755
No 238
>PRK03321 putative aminotransferase; Provisional
Probab=98.47 E-value=4.1e-05 Score=85.22 Aligned_cols=127 Identities=11% Similarity=-0.038 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+.+.+|+++|.+.+ ..++|+|+++++..++.+- . .+| + .|++..-+....
T Consensus 61 ~lr~~ia~~~~~~~~----------~I~~~~G~~~~l~~~~~~~----~------~~g--------d-~Vli~~p~y~~~ 111 (352)
T PRK03321 61 ELRAALAEHLGVPPE----------HVAVGCGSVALCQQLVQAT----A------GPG--------D-EVIFAWRSFEAY 111 (352)
T ss_pred HHHHHHHHHhCcCHH----------HEEECCCHHHHHHHHHHHh----c------CCC--------C-EEEeCCCCHHHH
Confidence 455667777886543 5788999988765554321 1 122 2 244443332223
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++.++++.+|++++++.++.. +.+|+.+...+.+|.+-|.+++.+
T Consensus 112 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~---------------- 169 (352)
T PRK03321 112 PILVQVAGATPVQVPLTPDHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELAR---------------- 169 (352)
T ss_pred HHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHH----------------
Confidence 3334444458888998867899999999988643 456666777888999999999998
Q ss_pred chHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+. +|+ |+.+|.+|+.+
T Consensus 170 ----l~~~~~~~~-------~ii~De~y~~~ 189 (352)
T PRK03321 170 ----FLDAVPADV-------LVVLDEAYVEY 189 (352)
T ss_pred ----HHHhCCCCe-------EEEEechHHHh
Confidence 8876 578 99999999865
No 239
>PRK08175 aminotransferase; Validated
Probab=98.47 E-value=0.00028 Score=80.29 Aligned_cols=163 Identities=10% Similarity=0.021 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
++.+...+.....+.....|.......++...+.+|+.+..|++-.. ....++|+|++++....+.+. .
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-------~~~i~~t~G~~~~l~~~~~~~----~ 112 (395)
T PRK08175 44 PPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDP-------ESEAIVTIGSKEGLAHLMLAT----L 112 (395)
T ss_pred CHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEccCcHHHHHHHHHHh----C
Confidence 34444444333333222334333345678888889998887775320 014789999999875443321 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.|| -.|++++-++.....++..-+.++..++.++++ .+.++|+++++.... .+.+++.+..
T Consensus 113 ------~~g---------d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~~~~---~~~~v~i~~p 173 (395)
T PRK08175 113 ------DHG---------DTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRESYP---KPKMMILGFP 173 (395)
T ss_pred ------CCC---------CEEEEcCCCCcchHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhhccC---CceEEEEeCC
Confidence 122 236666767766666554333478888887543 358888888865311 2556666666
Q ss_pred CCcccccccH---HHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDSY---CCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDpL---~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-+|.+-+. ++|.+ +|++||+ |+.+|.+|+..
T Consensus 174 ~NPtG~~~~~~~~~~i~~--------------------~a~~~~i-------~ii~De~y~~l 209 (395)
T PRK08175 174 SNPTAQCVELEFFEKVVA--------------------LAKRYDV-------LVVHDLAYADI 209 (395)
T ss_pred CCCCCCCCCHHHHHHHHH--------------------HHHHcCc-------EEEEecchHhh
Confidence 7888988775 67777 9999999 99999999754
No 240
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=98.46 E-value=7.9e-05 Score=88.06 Aligned_cols=138 Identities=10% Similarity=0.015 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhC----CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 230 TELEIITMNWLGKMIG----LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG----~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.++-..+.+|+.+..| +++ ...++|+|+++++...+.+- . .|| -.|+
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~p----------e~Ivit~Ga~~al~~l~~~l----~------~pG---------D~Vl 147 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDP----------ERVVMSGGATGANETIMFCL----A------DPG---------DVFL 147 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCCh----------hhEEEccchHHHHHHHHHHh----C------CCC---------CEEE
Confidence 4555667777777766 333 36899999999987665541 1 133 2356
Q ss_pred ecCCCchHHHHHHH-HCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhh
Q psy11047 306 CSDQAHSSVEKAGL-IGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTA 379 (943)
Q Consensus 306 ~S~~aHySv~KAa~-LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~ 379 (943)
+..-.+......+. ..+.+++.|+++ +++.+|+++++++++...+.+..+.+|+.+-..+-+|.+-+ +++|.+
T Consensus 148 v~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~- 226 (496)
T PLN02376 148 IPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVR- 226 (496)
T ss_pred ECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHH-
Confidence 66666666666553 334588899985 46789999999887654333444677777788899999877 455566
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++-+|-+|+..
T Consensus 227 -------------------~a~~~~i-------~lI~DEiY~~~ 244 (496)
T PLN02376 227 -------------------FVTRKNI-------HLVVDEIYAAT 244 (496)
T ss_pred -------------------HHHHcCC-------EEEEEcCcccc
Confidence 8999999 99999999875
No 241
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.44 E-value=0.00012 Score=84.39 Aligned_cols=111 Identities=14% Similarity=-0.052 Sum_probs=80.5
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGD 339 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~d 339 (943)
..++|+|++++...++.+.. .|| + .|++.+-++.....++..-+.+++.||++++| +|++
T Consensus 143 ~Iiit~G~~~al~~~~~~l~----------~pg--------d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~ 202 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHL----------LPG--------D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPE 202 (431)
T ss_pred eEEEecCcHHHHHHHHHHhC----------CCC--------C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHH
Confidence 58899999999876665421 122 2 35555666666777775434588899997665 9999
Q ss_pred HHHHHHHHhhccCCCcEEEEEe-cCCCcccccccHH---HhhhhccccccccccccccCchHHHHHHc-CCCCCccchhh
Q psy11047 340 KLIEAIERDKKKHLIPFFIFSG-LALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSY-FPKFQSVRLAQ 414 (943)
Q Consensus 340 aLe~aI~~d~~kG~~P~~VVaT-aGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~-Gl~~~~l~lwL 414 (943)
+|+++++.. +.+++.+ -..+-||.+-+.+ +|.+ +|++| ++ |+
T Consensus 203 ~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~--------------------la~~~~~~-------~i 249 (431)
T PRK15481 203 KLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRN--------------------LLARYPQV-------LV 249 (431)
T ss_pred HHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHH--------------------HHHhcCCc-------eE
Confidence 999988642 4444444 7788889987765 7777 89999 99 99
Q ss_pred hHHhhhcCC
Q psy11047 415 KFEALVLGD 423 (943)
Q Consensus 415 HVDAA~GG~ 423 (943)
-.|-+|+-+
T Consensus 250 i~De~Y~~~ 258 (431)
T PRK15481 250 IIDDHFALL 258 (431)
T ss_pred EecCchhhh
Confidence 999999755
No 242
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.43 E-value=0.00013 Score=84.71 Aligned_cols=358 Identities=13% Similarity=0.069 Sum_probs=168.4
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHHH-HHH--HHHhccC-ccccCChh
Q psy11047 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGD-MLS--DAINCLG-FTWASSPA 228 (943)
Q Consensus 153 p~~l~~~l~~~lPe~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silgd-~L~--~alN~n~-~~~~~SPa 228 (943)
|.+++..-+..+|+ +.+-.++++.+.++-..... ...|.|-=...--+|+++.. ++. .++.... ...+.|-.
T Consensus 32 P~~i~~~~~~~lp~-~~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQG 107 (429)
T PF02347_consen 32 PEEIRLKKPLNLPE-PLSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQG 107 (429)
T ss_dssp -GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBHH
T ss_pred CHhhcCCCCCCCCC-CCCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHHH
Confidence 55554332345653 37788999999886543322 23333321111125666655 222 1121110 11123333
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.-++-.+.-.++++|.|+|-. ..-+..|||.+- .|+..|.... + . .+-.+++|+
T Consensus 108 ~Lq~lfe~Qs~i~eLTGmdva----------NaSlyd~atA~a-Ea~~ma~r~~-~-------~-------~~~~vlv~~ 161 (429)
T PF02347_consen 108 RLQALFEYQSMICELTGMDVA----------NASLYDGATAAA-EAMLMAVRAT-K-------R-------KRNKVLVPE 161 (429)
T ss_dssp HHHHHHHHHHHHHHHHTSSEE-----------SEBSSCCHHHH-HHHHHHHHHH-T-------T----------EEEEET
T ss_pred HHHHHHHHHHHHHHhhCCCcc----------CCCCCChhHHHH-HHHHHHHHhc-c-------c-------CCcEEEEcC
Confidence 444444566789999999853 112445555443 3444332211 0 0 122588899
Q ss_pred CCchHHHHHHH----HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccc
Q psy11047 309 QAHSSVEKAGL----IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKG 384 (943)
Q Consensus 309 ~aHySv~KAa~----LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d 384 (943)
..|........ ..+.+++.+++++.+..| .+ .+..|+.+..+ ..|.+.++++|++
T Consensus 162 ~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~------~~a~v~vq~Pn-~~G~~ed~~~i~~------ 220 (429)
T PF02347_consen 162 SLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DD------DTAAVMVQNPN-TFGVFEDIKEIAD------ 220 (429)
T ss_dssp TS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------ST------TEEEEEEESS--TTSB--THHHHHH------
T ss_pred CcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------cc------CeEEEEeecCC-CCceEeeHHHHHH------
Confidence 99988766542 234588999998888888 22 26677776665 4588888999999
Q ss_pred cccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCccccc
Q psy11047 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464 (943)
Q Consensus 385 ~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p 464 (943)
+++++|. .+.+ +|---+ + +. +.+
T Consensus 221 --------------~~h~~ga-------l~~~-~ad~~a--L--------~~-------------------------l~~ 243 (429)
T PF02347_consen 221 --------------IAHAAGA-------LVIV-GADPNA--L--------GG-------------------------LKS 243 (429)
T ss_dssp --------------HHHHTT--------EEEE-CGGCCG--C--------CT-------------------------C--
T ss_pred --------------HHHHcCC-------EEEE-ecCHHH--H--------hC-------------------------cCC
Confidence 9999987 4443 331111 1 10 122
Q ss_pred chhhhhcCCCCeeEEEEcCCCccC--------------ccCcchhhhhcccCccccccC-C-CCcccccCccccC----C
Q psy11047 465 PASLRIQGLGRAQNFTIVPSSLLR--------------VKNSGALHRTFNVEPLYLRHE-N-SGLAIDYMHWQIP----L 524 (943)
Q Consensus 465 ~~r~~l~Gie~ADSItiDpHK~L~--------------vr~~~~L~~af~~~p~YL~~~-~-~g~~~d~~~~tie----~ 524 (943)
+- --.||-+ +.-||-++ +|+. +.+.+. ...++.. + .|. ..+ ..+++ -
T Consensus 244 Pg------e~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~lP--GRiVG~t~D~~G~-~~~-~ltLqtREQH 310 (429)
T PF02347_consen 244 PG------EYGADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQLP--GRIVGQTKDADGK-RAF-VLTLQTREQH 310 (429)
T ss_dssp GG------GGT-SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS---S-EEEEEEBCCCS-CCE-EEE-GGGTCH
T ss_pred hh------hcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhCC--Cceeccccccccc-cee-eecccccccc
Confidence 21 1267887 66688777 2222 222111 1111100 0 110 000 00111 0
Q ss_pred CCC------------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcc
Q psy11047 525 SKR------------FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPN 592 (943)
Q Consensus 525 SRr------------frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~ 592 (943)
-|| .-|+..|+.+..+|.+|+++..+.
T Consensus 311 IrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~----------------------------------------- 349 (429)
T PF02347_consen 311 IRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAER----------------------------------------- 349 (429)
T ss_dssp HHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHH-----------------------------------------
Confidence 012 123467778999999999998888
Q ss_pred cccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEee
Q psy11047 593 FILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQN 672 (943)
Q Consensus 593 ~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~ 672 (943)
.++.|.++++.|.+..++.+..+.-..-|....++ ....+|+++....| +... ..+...+=+.+
T Consensus 350 ----------~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~--~~~~~l~~~~~~~g-l~~~---~~~~~~~li~~ 413 (429)
T PF02347_consen 350 ----------IHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD--KEVEELLKRGIEGG-LNLR---YPDDGALLICV 413 (429)
T ss_dssp ----------HHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS---HHHHHHHHTT-----EEEG---GG-SSEEEEE-
T ss_pred ----------HHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc--HHHHHHHHHHHhcC-CCcc---ccCCCeEEEEc
Confidence 35678899999988744444344434444444332 22234666666666 3322 22333555666
Q ss_pred cCCCCHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEI 688 (943)
Q Consensus 673 ~~~tt~edId~ll~~I 688 (943)
--.+|++|||++++.+
T Consensus 414 TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 414 TETRTKEDIDRLVEAF 429 (429)
T ss_dssp -TT--HHHHHHHHH--
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6778999999998764
No 243
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=98.43 E-value=0.00018 Score=82.66 Aligned_cols=138 Identities=7% Similarity=-0.121 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
++.|.++.++|++..+++ ..+|+++|||||..|+..||.+..+ ..++ .+-+|.....
T Consensus 77 ~~~~~~la~~l~~~~~~~------------~v~f~~SGseA~e~Aik~ar~~~~~----~~~~-------r~~ii~~~~~ 133 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFD------------KVFFANSGAEANEGAIKLARKWGRK----HKNG-------AYEIITFDHS 133 (395)
T ss_pred CHHHHHHHHHHhhccCCC------------EEEEeCCcHHHHHHHHHHHHHHhhc----cCCC-------CcEEEEECCC
Confidence 566677777777654332 4789999999999999999864211 0111 2234556667
Q ss_pred CchHHHHHHHHCCcc-EE--EEecCCC----CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhh
Q psy11047 310 AHSSVEKAGLIGLVN-MR--YIESDDK----LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGT 378 (943)
Q Consensus 310 aHySv~KAa~LG~~~-v~--~Vp~D~~----grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~ 378 (943)
-|-+..-++.++... .+ ..|.... ..-|.++|++.+... +.+|+..-.....|.+-| +++|.+
T Consensus 134 yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~ 207 (395)
T PRK03715 134 FHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRA 207 (395)
T ss_pred cCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHH
Confidence 787776666443211 11 1111000 123678888877532 445555544445566655 888888
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ ++++|-++.|+
T Consensus 208 --------------------l~~~~~~-------llI~DEv~tG~ 225 (395)
T PRK03715 208 --------------------LTKQHGL-------LLIVDEVQTGC 225 (395)
T ss_pred --------------------HHHHcCC-------EEEEeccccCC
Confidence 9999999 99999999875
No 244
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=98.41 E-value=0.00012 Score=82.29 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=82.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+|+.++.+.+ ..++|+|++++...++.+ +. ++ .|++.+-+....
T Consensus 58 ~lr~~ia~~~~~~~~----------~i~it~Ga~~~l~~~~~~-----~~---------------~~-~v~i~~P~y~~~ 106 (354)
T PRK06358 58 ELRKRIASFEQLDLE----------NVILGNGATELIFNIVKV-----TK---------------PK-KVLILAPTFAEY 106 (354)
T ss_pred HHHHHHHHHhCCChh----------hEEECCCHHHHHHHHHHH-----hC---------------CC-cEEEecCChHHH
Confidence 455666777777654 689999999998665442 11 11 134444444445
Q ss_pred HHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~ 389 (943)
..++...+.+++.++.+.+ +.+| +++.+.+... +.+++.+...+-+|.+-+ +.+|.+
T Consensus 107 ~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~----------- 168 (354)
T PRK06358 107 ERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILD----------- 168 (354)
T ss_pred HHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHH-----------
Confidence 5555443447888888643 4788 5555555321 456666777889998866 666666
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|.-+
T Consensus 169 ---------~a~~~~~-------~ii~De~Y~~~ 186 (354)
T PRK06358 169 ---------KCEKRNI-------YLIIDEAFMDF 186 (354)
T ss_pred ---------HHHhcCC-------EEEEeCccccc
Confidence 8999999 99999999755
No 245
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.40 E-value=0.00012 Score=84.41 Aligned_cols=84 Identities=14% Similarity=-0.089 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCCeEEec--CCCccEEEEEecCCC--hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHH
Q psy11047 606 LAQKFEALVLGDPRFEIPA--ARHLGMVVIRLLGEN--ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDI 681 (943)
Q Consensus 606 LA~~l~~~L~~~p~~eIl~--~~~l~iV~Fr~~g~n--~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edI 681 (943)
+.+++.+.|++...+..+. .....++.|.+.+.+ .....+.+.|.++|.+ +.+. + ..+|++.+..+|++||
T Consensus 335 ~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~-v~~~---~-~~lR~~p~l~~t~edI 409 (423)
T PRK05964 335 LSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVL-LRPL---G-NTIYLMPPYIITAEEL 409 (423)
T ss_pred HHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeE-EEec---C-CEEEEeCCcccCHHHH
Confidence 4444555444432222222 223445677775432 2456788888888854 4432 2 5899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 682 TRDWNEIRNTATE 694 (943)
Q Consensus 682 d~ll~~I~~~~~~ 694 (943)
+++++.++++..+
T Consensus 410 d~~v~~l~~al~~ 422 (423)
T PRK05964 410 DRITDAIVEVADE 422 (423)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888755
No 246
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.39 E-value=3.3e-05 Score=85.60 Aligned_cols=300 Identities=14% Similarity=0.069 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+-..+.+.||.|+|.-.. =+...++|-.|+.-+++|--+. .+ ++. +++|+..
T Consensus 76 ~lp~~lgdklApLiGA~~~-----------Evvv~dtts~nl~k~L~aalr~-------~~--------~r~-vIv~E~~ 128 (407)
T COG3844 76 DLPERLGDKLAPLIGARAG-----------EVVVTDTTSINLFKVLAAALRP-------QE--------GRR-VIVSEGD 128 (407)
T ss_pred hchhHHHHHhhhhhcCCCC-----------ceEEeCCcchHHHHHHHHHhcc-------CC--------Cce-EEeecCC
Confidence 4555788999999998653 3566777778877777663211 00 233 4556654
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i 390 (943)
-+-...=..-|...+..+.-+-.+.+.+.++++++..+ ...|+.+.-..-||-.-++.+|..
T Consensus 129 ~fpTdly~a~g~~~~~~~~~~~~~~~~P~~~~~~~~dd------~AvV~L~~V~y~TGql~dm~aiT~------------ 190 (407)
T COG3844 129 NFPTDLYIAEGLADLLGIGYDLEGVIAPRALEEAITDD------VAVVLLSHVNYKTGQLLDMRAITA------------ 190 (407)
T ss_pred CCCcchhhhcchhhhhcccccceeeeChHHHHHhhccc------eEEEEeccccccccceeeHHHHHH------------
Confidence 43322211112222333334556777888999999988 678889999999999999999999
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+++++|+ .+--|=|+.++ ++ | .. |
T Consensus 191 --------~AH~~ga-------lv~wDLAHsaG-av--p---------------------------------~~-----L 214 (407)
T COG3844 191 --------LAHQHGA-------LVGWDLAHSAG-AV--P---------------------------------VD-----L 214 (407)
T ss_pred --------HHHhcCc-------eEEeehhcccC-Cc--c---------------------------------ee-----e
Confidence 9999999 78888888777 33 1 11 1
Q ss_pred cCCCCeeEEEEcCCCccC---------ccCcchhhhhcccCccccccCCCCccccc-Ccccc-CCCCCcchH--------
Q psy11047 471 QGLGRAQNFTIVPSSLLR---------VKNSGALHRTFNVEPLYLRHENSGLAIDY-MHWQI-PLSKRFRAL-------- 531 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~---------vr~~~~L~~af~~~p~YL~~~~~g~~~d~-~~~ti-e~SRrfrAL-------- 531 (943)
.+ ..||.-..+.||+|+ +-.+.....+...-.-++++... +.. ..|.. ++.|||.-.
T Consensus 215 h~-~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~p---f~m~~~y~p~~ga~rf~~gt~~V~s~a 290 (407)
T COG3844 215 HA-AGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARP---FAMEEVYAPGPGARRFLCGTQPVLSLA 290 (407)
T ss_pred cc-cCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCc---chhhhccCcCccccceeeCCcchhhhH
Confidence 11 368999999999998 11111111111111123332211 000 01222 455565421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHH
Q psy11047 532 KLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 611 (943)
Q Consensus 532 klW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~ 611 (943)
.+-..|-.++. .++..+|++ ++.|+.+|-
T Consensus 291 al~~aLDifa~---------------------------~~i~~lR~k------------------------SlaLTd~fi 319 (407)
T COG3844 291 ALEGALDIFAD---------------------------VDITELRKK------------------------SLALTDYFI 319 (407)
T ss_pred HHhhhhhhhhh---------------------------cCHHHHHHh------------------------hhHHHHHHH
Confidence 11112222222 223334433 688999999
Q ss_pred HHHhCC-C--CeEEecCC----CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEE-eecCCCCHHHHHH
Q psy11047 612 ALVLGD-P--RFEIPAAR----HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRA-QNFTRTTNDDITR 683 (943)
Q Consensus 612 ~~L~~~-p--~~eIl~~~----~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~-v~~~~tt~edId~ 683 (943)
+++... + ++++..|. .-+-|+|+.+ ...++.+.|..+|.+- -.+.+.++|| ..-.+++-.||-.
T Consensus 320 eLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp----~~~~V~qaLi~rGVig----D~R~P~vlRfgftPlY~~~~DVw~ 391 (407)
T COG3844 320 ELVEARCEYYGLTLVTPRAHEERGSQVSLYHP----HGYQVMQALIDRGVIG----DFREPDVLRFGFTPLYVSFVDVWD 391 (407)
T ss_pred HHHHhccccCCcEEeccchhhhccceeeEecC----cHHHHHHHHHHcCccc----cccCCCeeeecCccceechhHHHH
Confidence 998764 4 57887654 5888999976 2578888899999642 2466889999 7777899999999
Q ss_pred HHHHHHHHHHH
Q psy11047 684 DWNEIRNTATE 694 (943)
Q Consensus 684 ll~~I~~~~~~ 694 (943)
.++.|+++.+.
T Consensus 392 AV~~L~evL~t 402 (407)
T COG3844 392 AVDALEEVLDT 402 (407)
T ss_pred HHHHHHHHHHh
Confidence 99988877544
No 247
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.37 E-value=3.5e-05 Score=90.14 Aligned_cols=122 Identities=7% Similarity=-0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch-
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS- 312 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy- 312 (943)
..+.+.+++++|.+. .+++++|+.|++.++.+ +. +| -.|++|+..|.
T Consensus 125 ~~le~~lA~l~gae~------------alvv~sg~aAi~l~l~~-----l~------~G---------deVIvs~~e~v~ 172 (454)
T TIGR00474 125 SHVEGLLCELTGAED------------ALVVNNNAAAVLLALNT-----LA------KG---------KEVIVSRGELVE 172 (454)
T ss_pred HHHHHHHHHHhCCCc------------EEEECCHHHHHHHHHHH-----hC------Cc---------CEEEECCChhhh
Confidence 346678899999863 46788899998777632 11 22 23677877663
Q ss_pred -----HHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc--cc--ccccHHHhhhhcccc
Q psy11047 313 -----SVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA--FL--VVDSYCCLGTAMIVK 383 (943)
Q Consensus 313 -----Sv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~--tG--aIDpL~eIa~~~~~~ 383 (943)
++...+...+..++.++.+ +..++++++++|+++ +.+|+.+.-++. .| .+-|+++|++
T Consensus 173 ~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~------T~lv~~~h~sN~~~~G~~~~~dl~~I~~----- 239 (454)
T TIGR00474 173 IGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITEN------TALLLKVHTSNYRIVGFTEEVSIAELVA----- 239 (454)
T ss_pred hcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcC------CEEEEEEccCcccccCCCCCCCHHHHHH-----
Confidence 3333333334467777653 456899999998765 455555555544 35 4678999999
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
+|++||+ .+.||++.|.
T Consensus 240 ---------------la~~~g~-------~vivD~~sG~ 256 (454)
T TIGR00474 240 ---------------LGREHGL-------PVMEDLGSGS 256 (454)
T ss_pred ---------------HHHHcCC-------eEEEECCCcc
Confidence 9999999 9999987553
No 248
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.37 E-value=4.4e-05 Score=87.84 Aligned_cols=126 Identities=10% Similarity=0.102 Sum_probs=89.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....||+.+ +.+-|-+ ..+++++|++|+..++.+- + .+| -.
T Consensus 61 ~gnPt~~~Le~~l----a~le~~~------------~~v~~sSG~aAi~~~l~al----l------~~G---------D~ 105 (395)
T PRK05967 61 RGTPTTDALCKAI----DALEGSA------------GTILVPSGLAAVTVPFLGF----L------SPG---------DH 105 (395)
T ss_pred CCChHHHHHHHHH----HHHhCCC------------CEEEECcHHHHHHHHHHHh----c------CCC---------CE
Confidence 4567777777644 4554432 4678888999987776542 1 133 24
Q ss_pred EEecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|+++...+.+....+ .+| .++..++.+ +.++++++|+++ +.+|..+..++.++.+.||++|++
T Consensus 106 Vlv~~~~Y~~~~~l~~~~l~~~G-i~v~~vd~~-----~~e~l~~al~~~------TklV~lesPsNP~l~v~dl~~I~~ 173 (395)
T PRK05967 106 ALIVDSVYYPTRHFCDTMLKRLG-VEVEYYDPE-----IGAGIAKLMRPN------TKVVHTEAPGSNTFEMQDIPAIAE 173 (395)
T ss_pred EEEccCCcHHHHHHHHHHHHhcC-eEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHH
Confidence 777888888876533 133 366666543 357788888654 678888888888999999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ ++.||.+|+..
T Consensus 174 --------------------la~~~g~-------~vvVD~t~a~p 191 (395)
T PRK05967 174 --------------------AAHRHGA-------IVMMDNTWATP 191 (395)
T ss_pred --------------------HHHHhCC-------EEEEECCccCc
Confidence 9999999 99999999764
No 249
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=98.36 E-value=0.00025 Score=80.28 Aligned_cols=108 Identities=7% Similarity=-0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+++.+|.+.+ ..++|+|+++++..++.+. . .+| -.|++.+-+....
T Consensus 68 ~Lr~aia~~~~~~~~----------~I~vt~Gs~e~i~~~~~~l----~------~~g---------d~vlv~~P~y~~~ 118 (366)
T PRK01533 68 TLRQTIANKLHVKME----------QVLCGSGLDEVIQIISRAV----L------KAG---------DNIVTAGATFPQY 118 (366)
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHHh----c------CCC---------CEEEEcCCcHHHH
Confidence 356667777888754 6899999999987665542 1 122 2356666666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
..++.+.+.+++.|+.+ ++.+|+++|+++++.. +.+++.+...+.||.+-+.+++.+
T Consensus 119 ~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~~------~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 119 RHHAIIEGCEVKEVALN-NGVYDLDEISSVVDND------TKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred HHHHHHcCCEEEEeecC-CCCcCHHHHHHHhCcC------CcEEEEeCCCCCCCCCcCHHHHHH
Confidence 66665544588899986 5679999999888643 456666778999999988776666
No 250
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=98.35 E-value=4.9e-05 Score=86.90 Aligned_cols=324 Identities=10% Similarity=-0.065 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 204 ~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
+|.++-+.+. +.......-+|...++-.++.+.|.++++.|+++ .-.++++|||.+.=.++.. .+
T Consensus 15 ~~~~~~~~~~---~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~--------~v~~l~GsGT~a~Eaa~~n----l~ 79 (374)
T TIGR01365 15 RPGWSIEELK---NAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADY--------LIGIVPASDTGAVEMALWS----ML 79 (374)
T ss_pred CchhhHHHHh---hhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCc--------EEEEECCchHHHHHHHHHH----cC
Confidence 6675333333 3344444668999999999999999999986541 2356799999887444332 11
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHH--H-HHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSV--E-KAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv--~-KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
+ .+| ..++++. .++- . +.+ .+|..++..+..+....+|+++++. . + -|+
T Consensus 80 ~-----~~g--------~~vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~----~--~-----~v~ 132 (374)
T TIGR01365 80 G-----CRG--------VDVLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF----K--N-----DVV 132 (374)
T ss_pred C-----CCC--------CeEEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC----C--C-----CEE
Confidence 0 011 1233333 5552 2 555 4676456777766666789998872 1 1 167
Q ss_pred EecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeee
Q psy11047 360 SGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVI 439 (943)
Q Consensus 360 aTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcF 439 (943)
.|+.-|.+|...|+++++. .+ ++. .+-|||--+.+ ..
T Consensus 133 ~vhnETSTGv~npv~~i~~--------------------~~--~~~-------lliVDavSs~g-~~------------- 169 (374)
T TIGR01365 133 FTWNGTTSGVRVPNGDFIP--------------------AD--REG-------LTICDATSAAF-AQ------------- 169 (374)
T ss_pred EecCCCchheecccccccc--------------------cc--CCC-------cEEEEccchhc-CC-------------
Confidence 9999999999999977665 22 366 78999873322 11
Q ss_pred eecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCc--------chhhhhcccCccccccCCC
Q psy11047 440 RLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNS--------GALHRTFNVEPLYLRHENS 511 (943)
Q Consensus 440 R~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~--------~~L~~af~~~p~YL~~~~~ 511 (943)
+.. + ..+|-+....+|.|+.+-. ..+...-... .|..-.
T Consensus 170 -------------------------~l~--~---d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~-~y~~~~-- 216 (374)
T TIGR01365 170 -------------------------DLD--Y---HKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYT-PAWPLP-- 216 (374)
T ss_pred -------------------------CCC--h---hHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcC-CCCCCh--
Confidence 011 1 1379999999999992221 1221111111 121100
Q ss_pred CcccccCccccCCC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccc
Q psy11047 512 GLAIDYMHWQIPLS-----KRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 586 (943)
Q Consensus 512 g~~~d~~~~tie~S-----RrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~ 586 (943)
.+.++...++ +.. ....|...++...+.+.++.+.+. -|++...++
T Consensus 217 ----~~~~~~~~~~~~~~~~~~---~t~~TP~v~~l~a~~~~l~~i~~e--------------gGle~~~~R-------- 267 (374)
T TIGR01365 217 ----KIFRLTKGGKLNKKIFEG---STINTPSMLCVEDWLDALKWAESI--------------GGLKPLIAR-------- 267 (374)
T ss_pred ----hhhccccccchhhhhhcC---CCCCChHHHHHHHHHHHHHHHHHc--------------cCHHHHHHH--------
Confidence 0011111000 000 011133334444445555543220 123222221
Q ss_pred cCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecC----CCccEEEEEecCCC----------hHHHHHHHHHhcc
Q psy11047 587 QTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAA----RHLGMVVIRLLGEN----------ILTEKLLKRLNSK 652 (943)
Q Consensus 587 ~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~----~~l~iV~Fr~~g~n----------~l~~~Ll~~L~~~ 652 (943)
+.++|+.+.+.+.+...++++.+ +...+++|++.+.. .+...+.+.|.++
T Consensus 268 ----------------h~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (374)
T TIGR01365 268 ----------------ADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKE 331 (374)
T ss_pred ----------------HHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHC
Confidence 67899999999999866787763 23445677774321 1146788888888
Q ss_pred CcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 653 GRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 653 G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
|..+.... ...+ ..+|+-+....+.+||+.+++.|.=+
T Consensus 332 gi~i~~G~~~~~~-~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 332 GVAYDIGSYRDAP-SGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred CEEEeccccccCC-CceEEecCCcCCHHHHHHHHHHHHHH
Confidence 86443221 2233 58999777889999999999888644
No 251
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.34 E-value=4e-05 Score=87.84 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=81.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCc
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~ 301 (943)
+....|.+.++|+. ++++.|.+ ..+.+++||.|+..++.+. + .+|
T Consensus 59 ~r~~~P~~~~lE~~----la~leg~~------------~av~~sSG~aAi~~al~al----l------~~G--------- 103 (384)
T PRK06434 59 TRWGNPTVQAFEEK----YAVLENAE------------HALSFSSGMGAITSAILSL----I------KKG--------- 103 (384)
T ss_pred eCCCChhHHHHHHH----HHHHhCCC------------cEEEeCCHHHHHHHHHHHH----h------CCC---------
Confidence 33467999999986 57777764 3689999999988777642 1 123
Q ss_pred eEEEecCCC---chHHH-HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhh
Q psy11047 302 LVAYCSDQA---HSSVE-KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLG 377 (943)
Q Consensus 302 ~vV~~S~~a---HySv~-KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa 377 (943)
-.|+++... .+.+. ..+..-+..+..+++++...++ ++.+ .+.+|....-++.++.+-|+++|+
T Consensus 104 D~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~-------l~~~-----~tklv~~e~~snpt~~v~Di~~I~ 171 (384)
T PRK06434 104 KRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD-------FDPS-----NYDLIYAESITNPTLKVPDIKNVS 171 (384)
T ss_pred CEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee-------ecCC-----CeeEEEEEcCCCCCceeecHHHHH
Confidence 135555432 22222 2222223477888876433332 1111 255777777788888999999999
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|+++|+ . ||++++..
T Consensus 172 ~--------------------la~~~~l-------v--VD~t~~s~ 188 (384)
T PRK06434 172 S--------------------FCHENDV-------I--VDATFASP 188 (384)
T ss_pred H--------------------HHHHcCe-------E--EECCCCCc
Confidence 9 9999987 5 59998654
No 252
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=98.33 E-value=0.00047 Score=79.13 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+.+.+.++|.+. .+. +..++|+..+..+|+++|+++++.|.++..++.
T Consensus 350 ~~~~~~~~l~~~Gv~v-~~~---g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 401 (406)
T PRK12381 350 KAKQISQEAAKAGVMV-LIA---GPNVVRFAPALNISEEEITTGLDRFARACERFV 401 (406)
T ss_pred HHHHHHHHHHHCCcEE-eeC---CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888654 332 446899988887899999999999988776543
No 253
>PRK09148 aminotransferase; Validated
Probab=98.32 E-value=0.00057 Score=78.27 Aligned_cols=144 Identities=10% Similarity=-0.030 Sum_probs=94.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|.......++...+.+|+.+.+|.+-.. ....++|+|++++...++.+- . .+| -
T Consensus 64 Y~~~~G~~~lr~aia~~~~~~~g~~~~~-------~~~I~it~G~~~al~~~~~~l----~------~~g---------d 117 (405)
T PRK09148 64 YSASKGIPGLRRAQAAYYARRFGVKLNP-------DTQVVATLGSKEGFANMAQAI----T------APG---------D 117 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCcEEEcCChHHHHHHHHHHh----c------CCC---------C
Confidence 3333335677777888887777764220 015799999999976665431 1 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccH---HHhhhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSY---CCLGTA 379 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL---~eIa~~ 379 (943)
.|++.+-++.....++...+.+++.++++.++. +.+.+++.+..... .+.+++.+..++-+|.+-+. ++|.+
T Consensus 118 ~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~---~~~~v~l~~P~NPtG~~~s~~~l~~l~~- 192 (405)
T PRK09148 118 VILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIP---KPIALIVNYPSNPTAYVADLDFYKDVVA- 192 (405)
T ss_pred EEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccc---cceEEEEeCCCCCCCcCCCHHHHHHHHH-
Confidence 355566666666666644445888898865442 34556666543221 25677777778899988775 56666
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+.+
T Consensus 193 -------------------~a~~~~~-------~ii~De~Y~~~ 210 (405)
T PRK09148 193 -------------------FAKKHDI-------IILSDLAYSEI 210 (405)
T ss_pred -------------------HHHHcCe-------EEEEeccchhh
Confidence 8999999 99999999865
No 254
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.30 E-value=0.00043 Score=78.64 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 206 SLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 206 silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
..+.+.+...+. ....|.......++-..+.+|+.+..|++... +.....++|+|++++...++.+. +
T Consensus 44 ~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~~~~i~it~Ga~~al~~~~~~l----~-- 111 (393)
T TIGR03538 44 AFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGV-----DPERHVLPVNGTREALFAFAQAV----I-- 111 (393)
T ss_pred HHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccC-----CCCceEEECCCcHHHHHHHHHHH----c--
Confidence 344455554433 12233322334567777888888887776210 00024678999999986665432 1
Q ss_pred hcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecC
Q psy11047 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLA 363 (943)
Q Consensus 286 ~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaG 363 (943)
.|| ....|++.+-........+.+-+.+++.|+++++ +.+|.++|++++... +.+++.+-.
T Consensus 112 ----~~g-------d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p 174 (393)
T TIGR03538 112 ----NPG-------QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRR------CQLLFVCSP 174 (393)
T ss_pred ----CCC-------CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhc------ceEEEEeCC
Confidence 123 1123555554554455555444458888988643 578999999888643 456666678
Q ss_pred CCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 364 LPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 364 TT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-||.+-+ +++|.+ +|++|++ |+.+|.+|+..
T Consensus 175 ~NPtG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~~ 210 (393)
T TIGR03538 175 GNPTGAVLSLDTLKKLIE--------------------LADQYGF-------IIASDECYSEL 210 (393)
T ss_pred CCCcCcccCHHHHHHHHH--------------------HHHHCCE-------EEEECcchhhc
Confidence 888998866 667777 8999999 99999999855
No 255
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.30 E-value=7.1e-05 Score=85.35 Aligned_cols=331 Identities=14% Similarity=0.003 Sum_probs=187.8
Q ss_pred eEEccCCCC-hHHHHHHHHHHHHhccC---cc---ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCCh
Q psy11047 195 HAYFPALNS-YPSLLGDMLSDAINCLG---FT---WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTA 267 (943)
Q Consensus 195 ~g~~~~~~s-~~silgd~L~~alN~n~---~~---~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGG 267 (943)
+.|-+++.. ++.++..+-...+|.++ .. .--||...++-.++.+.|.+|++.|+++ .--.+++||
T Consensus 6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y--------~Vlfl~Ggg 77 (364)
T PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY--------GVVFLQGGS 77 (364)
T ss_pred ceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC--------eEEEEeccH
Confidence 445555554 55777777778877554 22 2236777888889999999999998752 123556668
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH---HHHHHHHCCccEEEEec----CCCCCcCHHH
Q psy11047 268 SESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS---VEKAGLIGLVNMRYIES----DDKLSLRGDK 340 (943)
Q Consensus 268 TeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS---v~KAa~LG~~~v~~Vp~----D~~grmD~da 340 (943)
|.+.=.+++. ++ .+| .+...|+. ..++| .+.|..+|. +..+.. +...-.++++
T Consensus 78 T~~~ea~~~N----ll------~~g-------~~~~~~~~-tG~fg~r~~~ea~~~g~--v~~~~~~~~~~~~~~p~~~~ 137 (364)
T PRK12462 78 SLQFSMIPMN----FS------RPG-------AAAPEYVT-TGYWSRKAIGEASRVAA--MRVVWDGAASGYRTLPSLAE 137 (364)
T ss_pred HHHHHHHHHH----cC------CCC-------CcEEEEEe-CCHHHHHHHHHHHhcCC--ceEecCcCCCCCCcCCCHHH
Confidence 8776444332 11 111 11221332 35554 344446774 333332 1122345555
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
++ +..+ ..+|..|+..|.+|.-.| + +.+.++. .+-+|+.-
T Consensus 138 ~~--~~~d------~~~v~~t~NETstGv~~~-----~--------------------~~~~~~~-------llvvD~sS 177 (364)
T PRK12462 138 LD--WDAR------APFRHYVSNETVEGLQFP-----D--------------------AAGLPDS-------PLIADMSS 177 (364)
T ss_pred hc--cCCC------CcEEEEccCCCCceEecC-----c--------------------ccccCCC-------eEEEEcCc
Confidence 41 2222 457999999999998876 2 2223455 67788763
Q ss_pred cCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCCeeEEEEcCCCccC--------ccCc
Q psy11047 421 LGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLR--------VKNS 492 (943)
Q Consensus 421 GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~--------vr~~ 492 (943)
+-. . .+.. +...|-|....+|.++ ++++
T Consensus 178 ~~~-s--------------------------------------~pid-----~~~~dvi~agsQKnlgP~Gltvvivs~~ 213 (364)
T PRK12462 178 DFM-S--------------------------------------RPFD-----VEAYGMVYAHAQKNLGPAGVTVAIIRRA 213 (364)
T ss_pred hhh-C--------------------------------------CCCC-----hHHccEEEeeccccCCCCceEEEEECHH
Confidence 322 1 0111 1234889999999998 2222
Q ss_pred chhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccch
Q psy11047 493 GALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGT 572 (943)
Q Consensus 493 ~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~ 572 (943)
.+...-...|.|+. +..+--..+ +|.|.-.+.+.++...++.+++.. -|+
T Consensus 214 -al~~~~~~~p~~ld---------y~~~~~~~s-------~~nTPpv~~iy~l~~~l~~i~~e~-------------GGl 263 (364)
T PRK12462 214 -LLERVPDTLPPMLD---------FRTHVEHRS-------NYNTPPVFAIYVMALVLRWIRDEI-------------GGV 263 (364)
T ss_pred -HHhhccccCCchhh---------HHHHHhcCC-------CCCCchHHHHHHHHHHHHHHHHhc-------------cCH
Confidence 12111111122221 111000111 111333333444444555433200 134
Q ss_pred hhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEec----CCCccEEEEEecCCChHHHHHHHH
Q psy11047 573 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPA----ARHLGMVVIRLLGENILTEKLLKR 648 (943)
Q Consensus 573 ~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~----~~~l~iV~Fr~~g~n~l~~~Ll~~ 648 (943)
+.+.++ +.+.|+.+++.|.+.++|.... .+..--|+|++.+ .++..++++.
T Consensus 264 ~~~~~r------------------------~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~-~~l~~~f~~~ 318 (364)
T PRK12462 264 HAMRDI------------------------NARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQ-PRLDTLFKEQ 318 (364)
T ss_pred HHHHHH------------------------HHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCC-HHHHHHHHHH
Confidence 333222 6788999999999998666542 2345567899865 3678899999
Q ss_pred HhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 649 LNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 649 L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..++|.+.+.. ++..+-+|+++...++.++|+.+++.+++..++
T Consensus 319 a~~~gl~~lkG--hr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 319 STEAGFCGLSG--HRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHCCCccccC--CcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999765433 333455999999999999999999999887543
No 256
>KOG2862|consensus
Probab=98.30 E-value=0.00012 Score=80.83 Aligned_cols=164 Identities=12% Similarity=0.101 Sum_probs=106.6
Q ss_pred EccCCCChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHH
Q psy11047 197 YFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLL 276 (943)
Q Consensus 197 ~~~~~~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~ 276 (943)
+.|++...+ +-+..++|.|+.. ..||.+..+-.+|++-+...|.-... .--+|..+|+-+-=.||.
T Consensus 21 ~gPGPsnl~----~~V~~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~---------~tf~isgsGh~g~E~al~ 86 (385)
T KOG2862|consen 21 LGPGPSNLS----GRVQEAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANA---------QTFVISGSGHSGWEAALV 86 (385)
T ss_pred ecCCCcCCC----HHHHHhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCC---------ceEEEecCCcchHHHHHH
Confidence 445554433 3333455544332 46899999999999888888865432 123555556655433332
Q ss_pred HHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE
Q psy11047 277 AGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356 (943)
Q Consensus 277 aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~ 356 (943)
. .+ .||. .-+++.+..-.|-..+-+-++|. +|..|+.+--+....+++++.|... .|.
T Consensus 87 N----~l------ePgd------~vLv~~~G~wg~ra~D~~~r~ga-~V~~v~~~~G~~~~le~i~~~lsqh-----~p~ 144 (385)
T KOG2862|consen 87 N----LL------EPGD------NVLVVSTGTWGQRAADCARRYGA-EVDVVEADIGQAVPLEEITEKLSQH-----KPK 144 (385)
T ss_pred h----hc------CCCC------eEEEEEechHHHHHHHHHHhhCc-eeeEEecCcccCccHHHHHHHHHhc-----CCc
Confidence 1 11 1331 11233333333433333335665 8888888877788999999999885 488
Q ss_pred EEEEecCCCccccccc-HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh--hcCC
Q psy11047 357 FIFSGLALPAFLVVDS-YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL--VLGD 423 (943)
Q Consensus 357 ~VVaTaGTT~tGaIDp-L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA--~GG~ 423 (943)
+|+.|+|-+.||...| ++.+.+ +|++|+. .+-||+. +||-
T Consensus 145 ~vfv~hgdsSTgV~q~~~~~~g~--------------------lc~k~~~-------lllVD~VaSlggt 187 (385)
T KOG2862|consen 145 AVFVTHGDSSTGVLQDLLAISGE--------------------LCHKHEA-------LLLVDTVASLGGT 187 (385)
T ss_pred eEEEEecCccccccchHHHHHHH--------------------HhhcCCe-------EEEEechhhcCCc
Confidence 9999999999999999 556666 9999999 8999976 5554
No 257
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=98.30 E-value=3.9e-05 Score=88.28 Aligned_cols=313 Identities=14% Similarity=0.086 Sum_probs=155.9
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce-
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL- 302 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~- 302 (943)
...-...++|..+.+.+.+|||+.+..+ ..-+=..+||.||+.++.+- + .||- +.
T Consensus 59 ~G~~~id~iE~la~~ra~~lF~~~~~~w-------~anvqp~SGs~An~av~~aL----l------~pGD-------~Im 114 (399)
T PF00464_consen 59 GGCEYIDEIEELAIERAKELFGAEPKEW-------YANVQPHSGSQANLAVYMAL----L------KPGD-------TIM 114 (399)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHT-STTTE-------EEE---SSHHHHHHHHHHHH----T-------TT--------EEE
T ss_pred cCcchhhHHHHHHHHHHHHHhCCCcccc-------eEEeecCCchHHHHHHHHHH----H------hhcC-------cEE
Confidence 3446788999999999999999985421 01245678999997766541 1 1331 11
Q ss_pred EEEecCCCchHHHHHH-H-----HCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH
Q psy11047 303 VAYCSDQAHSSVEKAG-L-----IGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC 374 (943)
Q Consensus 303 vV~~S~~aHySv~KAa-~-----LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~ 374 (943)
.+=.+.-.|.|-.... . .|. -++...++| +++.+|.+++++.+++.. |.+|++ |.+..--.-|++
T Consensus 115 ~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~--G~S~y~~~~d~~ 187 (399)
T PF00464_consen 115 GLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHK-----PKLIIC--GASSYPRPIDFK 187 (399)
T ss_dssp EEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-------SEEEE--E-SSTSS---HH
T ss_pred ecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcC-----CCEEEE--CchhccCccCHH
Confidence 1223455676643322 1 221 256677887 789999999999998763 666664 333333345588
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
++.+ +|++.|. ++++|+|+-++ .. .
T Consensus 188 ~~re--------------------Iad~vga-------~l~~D~sH~~G-LI--a------------------------- 212 (399)
T PF00464_consen 188 RFRE--------------------IADEVGA-------YLMADISHIAG-LI--A------------------------- 212 (399)
T ss_dssp HHHH--------------------HHHHTT--------EEEEE-TTTHH-HH--H-------------------------
T ss_pred HHHH--------------------HHHhcCc-------EEEeccccccc-ce--e-------------------------
Confidence 8888 9999999 99999996443 10 0
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCC------CcccccC-ccccCCCCC
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENS------GLAIDYM-HWQIPLSKR 527 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~------g~~~d~~-~~tie~SRr 527 (943)
.|. +-.+ +++||-+|.+.||.|.=+.+..+-. +.....+...+. ...++.. ..+.+++=.
T Consensus 213 ---~g~-~~~P-------~~~ADvvt~sThKtl~GPrggiI~~--~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h 279 (399)
T PF00464_consen 213 ---GGL-FPNP-------FPYADVVTGSTHKTLRGPRGGIILT--NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPH 279 (399)
T ss_dssp ---TTS-S--G-------CCTSSEEEEESSGGG-SSS-EEEEE--S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--
T ss_pred ---hhe-ecCc-------cccceEEEeeccccccccCceEEEE--cCCccccCCcccccHHHHHHHhccccCCCcccCcc
Confidence 010 1111 3579999999999999333222100 000000000000 0001100 012222211
Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHH
Q psy11047 528 F-RALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRL 606 (943)
Q Consensus 528 f-rALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~L 606 (943)
. +..++-.+++..-...++++.++ -++.
T Consensus 280 ~~~iaalAval~ea~~~~fk~Ya~q---------------------------------------------------Vv~N 308 (399)
T PF00464_consen 280 MHRIAALAVALKEALSPEFKEYAKQ---------------------------------------------------VVKN 308 (399)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH---------------------------------------------------HHHH
T ss_pred hhHHHHHHHHHhcccCHHHHHHHHH---------------------------------------------------HHHH
Confidence 1 11122223333322334444444 3567
Q ss_pred HHHHHHHHhCCCCeEEec-CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccC------CCcEEEEe----ecCC
Q psy11047 607 AQKFEALVLGDPRFEIPA-ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR------IQGLGRAQ----NFTR 675 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~-~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~------g~~~lR~v----~~~~ 675 (943)
|+.|++.|.+. ++.|+. -.+..+|...+...+.-.....++|.+.|.+ +....+. ...-||+- +..-
T Consensus 309 Ak~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~-vnkn~iP~d~~~~~~sGlRlGT~~lT~rG 386 (399)
T PF00464_consen 309 AKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGII-VNKNTIPGDRSPFVPSGLRLGTPALTRRG 386 (399)
T ss_dssp HHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE--EEE--TTTSTTTT-SEEEEESHHHHHTT
T ss_pred HHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCee-ecccccCCCCCCCCCCEEEECCHHHHhCC
Confidence 78888888774 899985 3467778777754321234555667777753 3322221 13579993 3455
Q ss_pred CCHHHHHHHHHHH
Q psy11047 676 TTNDDITRDWNEI 688 (943)
Q Consensus 676 tt~edId~ll~~I 688 (943)
..++|+..+.+.|
T Consensus 387 ~~e~dm~~iA~~I 399 (399)
T PF00464_consen 387 MKEEDMKEIAELI 399 (399)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHhhC
Confidence 5678877776544
No 258
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=98.29 E-value=0.00075 Score=76.42 Aligned_cols=142 Identities=9% Similarity=0.003 Sum_probs=93.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCC-cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPG-GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~-~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.|...+...++-..+.+|+.+..|++-. .. ..++|+|++++...++.+- + .+|
T Consensus 63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~--------~~~~I~it~Gs~~al~~~~~~l----~------~~g-------- 116 (388)
T PRK07366 63 GYLLFHGTLDFREAAAQWYEQRFGLAVD--------PETEVLPLIGSQEGTAHLPLAV----L------NPG-------- 116 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcCC--------CcCeEEECCCcHHHHHHHHHHh----C------CCC--------
Confidence 3443444556777788888877776432 12 3678999999986655431 1 122
Q ss_pred ceEEEecCCCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHH
Q psy11047 301 RLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCC 375 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~e 375 (943)
+ .|++.+-+.......+...+.+++.||.+++ ..+|.+++++.+... +.+++.+-..+-||.+-+ +++
T Consensus 117 d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~~s~~~~~~ 189 (388)
T PRK07366 117 D-FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAIAPLSFFQE 189 (388)
T ss_pred C-EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCccCCHHHHHH
Confidence 2 2444454554455555544457888998743 467888887776432 445566667888998866 455
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|.+ +|++||+ |+-+|-+|+-+
T Consensus 190 l~~--------------------~a~~~~~-------~ii~De~Y~~~ 210 (388)
T PRK07366 190 AVA--------------------FCQQHDL-------VLVHDFPYVDL 210 (388)
T ss_pred HHH--------------------HHHHcCe-------EEEEecchhhc
Confidence 666 8999999 99999999765
No 259
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.28 E-value=0.0011 Score=74.96 Aligned_cols=140 Identities=8% Similarity=-0.094 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHHHhC----CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 227 PACTELEIITMNWLGKMIG----LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 227 PaateLE~~Vi~wLa~LlG----~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
+...++...+.+|+.+..| .+. ...++|+|++++...++.+. + .+| +-
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~----------~~I~it~Ga~~al~~~~~~~----~------~~g--------~~ 117 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITP----------ANISVGNGSDELIRSLLIAT----C------LGG--------EG 117 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCH----------HHEEEcCChHHHHHHHHHHH----c------CCC--------CC
Confidence 4456666667777766542 332 25789999999986555431 1 011 11
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC-CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcc
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD-KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI 381 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~-~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~ 381 (943)
.|++.+-+......++...+.+++.++.++ ++.+|+++|+++++... +..+.+++.+--.+-||.+-+.+++..
T Consensus 118 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~--- 192 (374)
T PRK02610 118 SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEW--- 192 (374)
T ss_pred eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHH---
Confidence 355555555556666654445788888865 47899999999986421 112566766667888999988766655
Q ss_pred ccccccccccccCchHHHHH-HcCCCCCccchhhhHHhhhcCC
Q psy11047 382 VKGLGFYKMKLQTNFPNFIL-SYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR~iar-~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++ .+++ |+-+|-+|.-+
T Consensus 193 -----------------l~~~~~~~-------~iI~De~Y~~~ 211 (374)
T PRK02610 193 -----------------LRSLPEDI-------LVVIDEAYFEF 211 (374)
T ss_pred -----------------HHhccCCc-------EEEEecccccc
Confidence 332 1477 99999999754
No 260
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=98.27 E-value=0.00064 Score=77.28 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHh
Q psy11047 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285 (943)
Q Consensus 207 ilgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~ 285 (943)
.+.+.+...++. ...|.......++-..+.+|+.+..|++ -.. ....++|+|++++...++.+- .
T Consensus 46 ~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-------~~~i~it~G~~~al~~~~~~l----~-- 111 (396)
T PRK09147 46 FIKDALAANLDG-LASYPTTAGLPALREAIAAWLERRYGLPALDP-------ATQVLPVNGSREALFAFAQTV----I-- 111 (396)
T ss_pred HHHHHHHHHhhh-hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc-------cceEEECCChHHHHHHHHHHH----c--
Confidence 344444444432 2334433344567677888888887865 210 014678999999986555431 1
Q ss_pred hcccCC-CchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEec
Q psy11047 286 YQQSHP-ELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGL 362 (943)
Q Consensus 286 ~~~~~p-Gl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTa 362 (943)
.+ | ....|++.+-+......++.+.+.+++.||+++ .+.+|+++|++.+... +.+++.+-
T Consensus 112 ----~~~~-------~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~n 174 (396)
T PRK09147 112 ----DRDG-------PGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCS 174 (396)
T ss_pred ----CCCC-------CCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcC
Confidence 12 1 012355554444445556655445889999864 3579999998877542 45666667
Q ss_pred CCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 363 ALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 363 GTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..+-||.+-+ +++|.+ +|++|++ |+-+|-+|+-+
T Consensus 175 P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~y~~~ 211 (396)
T PRK09147 175 PGNPTGAVLPLDDWKKLFA--------------------LSDRYGF-------VIASDECYSEI 211 (396)
T ss_pred CCCCcCccCCHHHHHHHHH--------------------HHHHcCe-------EEEeecccccc
Confidence 7888998865 566666 8999999 99999999865
No 261
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.26 E-value=0.00023 Score=81.76 Aligned_cols=277 Identities=16% Similarity=0.155 Sum_probs=165.6
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|+.+ ++|-|.. ..+++++|..|...++.+- ++ +| -.
T Consensus 52 ~gnPt~~~le~~l----a~Le~g~------------~a~~~~SGmaAi~~~l~~l----l~------~G---------d~ 96 (386)
T PF01053_consen 52 YGNPTVRALEQRL----AALEGGE------------DALLFSSGMAAISAALLAL----LK------PG---------DH 96 (386)
T ss_dssp TC-HHHHHHHHHH----HHHHT-S------------EEEEESSHHHHHHHHHHHH----S-------TT---------BE
T ss_pred cccccHHHHHHHH----HHhhccc------------ceeeccchHHHHHHHHHhh----cc------cC---------Cc
Confidence 4578888888754 7777653 4678899988887776642 11 22 23
Q ss_pred EEecCCCchHHHHHHH--H--CCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 304 AYCSDQAHSSVEKAGL--I--GLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 304 V~~S~~aHySv~KAa~--L--G~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
|+++........+-+. + .+.++..++. -|+++++++|+++ +.+|..-..++.+.-+-||+.|++
T Consensus 97 iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-----~d~~~l~~~l~~~------t~~v~~EspsNP~l~v~Dl~~i~~- 164 (386)
T PF01053_consen 97 IVASDDLYGGTYRLLEELLPRFGVEVTFVDP-----TDLEALEAALRPN------TKLVFLESPSNPTLEVPDLEAIAK- 164 (386)
T ss_dssp EEEESSSSHHHHHHHHHCHHHTTSEEEEEST-----TSHHHHHHHHCTT------EEEEEEESSBTTTTB---HHHHHH-
T ss_pred eEecCCccCcchhhhhhhhcccCcEEEEeCc-----hhHHHHHhhcccc------ceEEEEEcCCCcccccccHHHHHH-
Confidence 5666665544444441 2 3456777755 3699999999885 667777778888888889999999
Q ss_pred ccccccccccccccCchHHHHHHcC-CCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhcc
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYF-PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSK 458 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~G-l~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~ 458 (943)
+|+++| + .+-||..|+.. .+
T Consensus 165 -------------------~a~~~g~~-------~~vVDnT~atp-~~-------------------------------- 185 (386)
T PF01053_consen 165 -------------------LAKEHGDI-------LVVVDNTFATP-YN-------------------------------- 185 (386)
T ss_dssp -------------------HHHHTTT--------EEEEECTTTHT-TT--------------------------------
T ss_pred -------------------HHHHhCCc-------eEEeeccccce-ee--------------------------------
Confidence 999999 9 99999999876 22
Q ss_pred CcccccchhhhhcCCCCeeEEEEcCCCccC-----------ccCcchhhhhcccCccccccCCCCcccccCccccCCCCC
Q psy11047 459 GRLHCVPASLRIQGLGRAQNFTIVPSSLLR-----------VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR 527 (943)
Q Consensus 459 G~~~~p~~r~~l~Gie~ADSItiDpHK~L~-----------vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr 527 (943)
..+.. -.||-+.-+..|+++ +++...+...+.. +....+--
T Consensus 186 ----~~pL~------~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~------------------~~~~~G~~ 237 (386)
T PF01053_consen 186 ----QNPLE------LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLRE------------------FRRLLGAT 237 (386)
T ss_dssp ----C-GGG------GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHH------------------HHHHHT-B
T ss_pred ----eccCc------CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcc------------------hhhhcCcc
Confidence 11111 148999999999887 1221111110000 00000112
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHH
Q psy11047 528 FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 607 (943)
Q Consensus 528 frALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA 607 (943)
..+..+|+.++ |..-|.-++++ +.+.|
T Consensus 238 ~~p~da~ll~r--gl~Tl~~R~~~---------------------------------------------------~~~nA 264 (386)
T PF01053_consen 238 LSPFDAWLLLR--GLRTLPLRMER---------------------------------------------------QNENA 264 (386)
T ss_dssp --HHHHHHHHH--HHTTHHHHHHH---------------------------------------------------HHHHH
T ss_pred chHHHHHHHhc--CCCcHHHHHHH---------------------------------------------------HHHHH
Confidence 23556676665 55666666665 46678
Q ss_pred HHHHHHHhCCCCeE-EecC----------------CCccEEEEEecCCChHHHHHHHHHhc--c----C---cEEEeecc
Q psy11047 608 QKFEALVLGDPRFE-IPAA----------------RHLGMVVIRLLGENILTEKLLKRLNS--K----G---RLHCVPAS 661 (943)
Q Consensus 608 ~~l~~~L~~~p~~e-Il~~----------------~~l~iV~Fr~~g~n~l~~~Ll~~L~~--~----G---~~~~s~t~ 661 (943)
+++++.|++.|.++ |..| .-.++++|.+++..+...++.++|+- . | -+.+.|..
T Consensus 265 ~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~ 344 (386)
T PF01053_consen 265 EALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPAS 344 (386)
T ss_dssp HHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTC
T ss_pred HHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccc
Confidence 88888899999887 3332 23589999998754345677777652 1 1 12222211
Q ss_pred --c----------CC--CcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 662 --L----------RI--QGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 662 --~----------~g--~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
+ .| .+.+|++++.. |++.+++.|++.
T Consensus 345 ~~h~~~~~e~~~~~Gi~~~liRlSvGlE----d~~dLi~Dl~~A 384 (386)
T PF01053_consen 345 TSHRSLSPEERAEAGISDGLIRLSVGLE----DPDDLIADLEQA 384 (386)
T ss_dssp TTTTTSCHHHHHHTTS-TTEEEEE--SS-----HHHHHHHHHHH
T ss_pred hhhccCChhhhhccCCCCCeeEEEeccC----CHHHHHHHHHHh
Confidence 1 11 46899988754 667777766654
No 262
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=98.24 E-value=0.0015 Score=75.69 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+.+.++|.++.. . -....++|+..+..+|+++|+++++.|.++..++
T Consensus 378 ~~~~~~~~l~~~Gv~~~~-~-g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 378 AVEKILDKCLEKGLLFYL-C-GNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred HHHHHHHHHHHCCCEEee-c-CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 456777888888975532 2 1224689998888999999999999998887655
No 263
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=98.23 E-value=0.0017 Score=74.35 Aligned_cols=128 Identities=9% Similarity=-0.025 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
++.+.|+++.+.+ ...|+.+||+||..|+..||.+.... .+ ...+.++.+...-|-+.
T Consensus 86 ~l~~~l~~~~~~~------------~~~~~~sGseA~e~a~klar~~~~~~-----~~-----~~~~~ii~~~~~~HG~~ 143 (403)
T PRK05093 86 RLAKKLIDATFAE------------RVFFANSGAEANEAAFKLARRYACDR-----HG-----PEKTEIIAFHNSFHGRT 143 (403)
T ss_pred HHHHHHHhhCCCC------------EEEEeCchHHHHHHHHHHHHHHHhhc-----CC-----CCCCeEEEEcCCcCCch
Confidence 4445566666442 46899999999999999998764321 01 01334566677777765
Q ss_pred HHHHHHCC------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc-cc----ccHHHhh
Q psy11047 315 EKAGLIGL------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL-VV----DSYCCLG 377 (943)
Q Consensus 315 ~KAa~LG~------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG-aI----DpL~eIa 377 (943)
.-+..++. ..+..++-+ |.+++++.+..+ +.+|+.. ....+| .+ +.+++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aaiiie-p~~~~gg~~~~~~~~l~~l~ 211 (403)
T PRK05093 144 LFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDDH------TCAVVVE-PIQGEGGVIPATPEFLQGLR 211 (403)
T ss_pred hhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcCC------eEEEEEe-cccCCCCCccCCHHHHHHHH
Confidence 54433221 123333332 688888888532 4455554 333343 33 2388888
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ ++.+|-+|.+.
T Consensus 212 ~--------------------l~~~~g~-------~lI~DEv~~g~ 230 (403)
T PRK05093 212 E--------------------LCDQHNA-------LLIFDEVQTGM 230 (403)
T ss_pred H--------------------HHHHcCC-------EEEEechhhCC
Confidence 8 9999999 99999999876
No 264
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=98.22 E-value=0.0026 Score=73.71 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=45.9
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
++.+.+.+ ......+.+.+.++|.+ +.+... ....||+.+....|+++|+++++.|.++..++.+
T Consensus 355 ~~~i~l~~-~~~~~~l~~~~~~~Gv~-~~~~~~-~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 355 MQGIDFGD-GELAGKIAAEAFENGLI-IETSGP-EDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred EEEEEecC-hHHHHHHHHHHHHCCCE-EeccCC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33555543 34566788888889964 443221 2357888888889999999999999998877643
No 265
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=98.22 E-value=0.00039 Score=81.54 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..+|-..+.+|+.+.+|.+... +....++|+|+++++...+.+-. .|| -.|++.+
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v------~~~~Iiit~Ga~~al~~l~~~l~----------~pG---------d~Vlv~~ 142 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTF------DPNKLVLTAGATSANETLMFCLA----------EPG---------DAFLLPT 142 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCc------ChHHeEEccChHHHHHHHHHHhC----------CCC---------CEEEECC
Confidence 3456667778887776643110 01358899999999766655311 122 2355555
Q ss_pred CCchHHHHHHH-HCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 309 QAHSSVEKAGL-IGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 309 ~aHySv~KAa~-LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
-........+. ..+.+++.|+++ +...+|+++|++++....+++..+.+++.+-..+-||.+-+ +++|.+
T Consensus 143 P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~---- 218 (468)
T PLN02450 143 PYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVD---- 218 (468)
T ss_pred CCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHH----
Confidence 55555555554 344578888874 45678999999998875555555777777778889998866 455566
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ |+-+|-+|+..
T Consensus 219 ----------------~a~~~~~-------~iI~DE~Y~~~ 236 (468)
T PLN02450 219 ----------------FITAKNI-------HLISDEIYSGT 236 (468)
T ss_pred ----------------HHHHCCc-------EEEEEcccccc
Confidence 8999999 99999999875
No 266
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=98.21 E-value=0.00066 Score=75.52 Aligned_cols=121 Identities=5% Similarity=-0.140 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++.+|+.+|.+.. ..++|+|++++...++.. +. + ++ +++. +-+....
T Consensus 44 ~lr~~ia~~~~~~~~----------~I~it~Gs~~~l~~~~~~-----~~------~--------~~-vv~~-~P~y~~y 92 (332)
T PRK06425 44 DIEDQIKIYTQGLKI----------KVLIGPGLTHFIYRLLSY-----IN------V--------GN-IIIV-EPNFNEY 92 (332)
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHH-----hC------C--------Cc-EEEe-CCChHHH
Confidence 456677888888754 588999999997665431 11 1 12 3444 4455555
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.||+++ ..+|.+.+++ . .+.+|+.+-..+-||.+-+ +.+|.+
T Consensus 93 ~~~~~~~G~~v~~vp~~~-~~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~------------- 149 (332)
T PRK06425 93 KGYAFTHGIRISALPFNL-INNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISE------------- 149 (332)
T ss_pred HHHHHHcCCeEEEEeCCc-ccCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHH-------------
Confidence 666655555889999875 4456554432 1 2456666678888998866 555566
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++|+ |+-+|-+|+-+
T Consensus 150 -------~a~~~~~-------~iI~DE~Y~~~ 167 (332)
T PRK06425 150 -------ICRKKGA-------LLFIDEAFIDF 167 (332)
T ss_pred -------HHHHcCC-------EEEEecchhcc
Confidence 7899999 99999999865
No 267
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=98.21 E-value=0.0014 Score=76.95 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=47.9
Q ss_pred cEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 629 GMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 629 ~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
.++.+.+.. +.....+.+.+.++|.+ +.++ ..+..++|+......|++||+++++.+.++..++.+..
T Consensus 389 l~~giel~~-~~~~~~i~~~l~~~Gvl-~~~~-~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~~ 456 (459)
T PRK11522 389 MLMAIEFVD-NEIGYNFASEMFRQRVL-VAGT-LNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVSV 456 (459)
T ss_pred eEEEEEecC-chHHHHHHHHHHHCCeE-EEec-CCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555543 23456778888888854 4433 23456899988889999999999999999887765543
No 268
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00019 Score=80.95 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=100.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 221 FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 221 ~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.+.-+-|.+..+|+++ +.|=|- ..++-|++|..|..+|++.- . ++| +.+..
T Consensus 56 YsRi~NPT~~vlE~Ri----AaLEGG------------~aa~a~aSG~AA~~~ai~~l-----a-----~aG---D~iVs 106 (426)
T COG2873 56 YTRIMNPTTDVLEERI----AALEGG------------VAALAVASGQAAITYAILNL-----A-----GAG---DNIVS 106 (426)
T ss_pred eeeccCchHHHHHHHH----HHhhcc------------hhhhhhccchHHHHHHHHHh-----c-----cCC---CeeEe
Confidence 4455778899999865 333222 34678899999999888751 1 233 11111
Q ss_pred ceEEEecCCCchHHHHHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 301 RLVAYCSDQAHSSVEKAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
-..+|-. ++.-+.-.. .+| ..++.|..+ |++.++++|+++. .+|.+-.-.+-.+.|-|++.|++
T Consensus 107 s~~LYGG--T~~lf~~tl~~~G-i~v~fvd~~-----d~~~~~~aI~~nT------kavf~EtigNP~~~v~Die~ia~- 171 (426)
T COG2873 107 SSKLYGG--TYNLFSHTLKRLG-IEVRFVDPD-----DPENFEAAIDENT------KAVFAETIGNPGLDVLDIEAIAE- 171 (426)
T ss_pred eccccCc--hHHHHHHHHHhcC-cEEEEeCCC-----CHHHHHHHhCccc------ceEEEEeccCCCccccCHHHHHH-
Confidence 1112211 121122233 234 478888765 4999999999984 44444333344567778999999
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G 459 (943)
+|+++|+ .+-||-.++.. .
T Consensus 172 -------------------iAh~~gv-------pliVDNT~atp-y---------------------------------- 190 (426)
T COG2873 172 -------------------IAHRHGV-------PLIVDNTFATP-Y---------------------------------- 190 (426)
T ss_pred -------------------HHHHcCC-------cEEEecCCCcc-e----------------------------------
Confidence 9999999 99999999875 3
Q ss_pred cccccchhhhhcCCCCeeEEEEcCCCccC
Q psy11047 460 RLHCVPASLRIQGLGRAQNFTIVPSSLLR 488 (943)
Q Consensus 460 ~~~~p~~r~~l~Gie~ADSItiDpHK~L~ 488 (943)
++.+.. ..||-|.=+.-||++
T Consensus 191 --l~rP~~------hGADIVvHS~TK~ig 211 (426)
T COG2873 191 --LCRPIE------HGADIVVHSATKYIG 211 (426)
T ss_pred --ecchhh------cCCCEEEEeeccccc
Confidence 233333 368999999999998
No 269
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=98.18 E-value=0.002 Score=72.02 Aligned_cols=123 Identities=6% Similarity=-0.040 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
.+++++++.+|.+.+ ..++|+|++++....+.+ + +| + .|+++.-.+...
T Consensus 59 ~lr~~ia~~~~~~~~----------~I~~t~G~~~~l~~~~~~-----~-------~g--------d-~V~v~~P~y~~~ 107 (337)
T PRK03967 59 PLREAIAEFYGLDAE----------NIAVGNGSDELISYLVKL-----F-------EG--------K-HIVITPPTFGMY 107 (337)
T ss_pred HHHHHHHHHhCcCcc----------eEEEcCCHHHHHHHHHHH-----h-------CC--------C-eEEEeCCChHHH
Confidence 355666777776543 678999999987433221 1 12 1 255566566555
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++...+.+++.++.++++.+|++++++.+.. +.+++.+...+-+|.+-+.+++.+
T Consensus 108 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~v~~~~P~NPtG~~~~~~~l~~---------------- 164 (337)
T PRK03967 108 SFYAKLNGIPVIDVPLKEDFTIDGERIAEKAKN-------ASAVFICSPNNPTGNLQPEEEILK---------------- 164 (337)
T ss_pred HHHHHHcCCeEEEeecCCCCCcCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 555554445888999988889999999875421 234556778899999999999998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++ +++ ++.+|.+|..+
T Consensus 165 ----i~~-~~~-------~ii~De~y~~~ 181 (337)
T PRK03967 165 ----VLE-TGK-------PVVLDEAYAEF 181 (337)
T ss_pred ----HHh-cCC-------EEEEECchhhh
Confidence 885 789 99999999754
No 270
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=98.17 E-value=0.0016 Score=77.41 Aligned_cols=54 Identities=7% Similarity=-0.130 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
...+.+.+.++|.+.. + .+ ..+|+.....+|++||+++++.++++...+....+
T Consensus 444 ~~~i~~~~~~~Gvl~~-~---~g-~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~~~~ 497 (504)
T PLN02760 444 GAYFGAECKKRGMLVR-V---AG-DNIMMSPPLIITPEEVDELISIYGKALKATEERVA 497 (504)
T ss_pred HHHHHHHHHhCCcEEE-e---cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888896543 2 12 46888887889999999999999999887754444
No 271
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.12 E-value=0.00018 Score=81.64 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=94.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|...-...++|..+++...+|||.... -+=-.+||.||+.++++- + .||-+ + +
T Consensus 64 YgGce~VD~vE~laierak~LFga~~a-----------nVQPhSGs~AN~av~~Al----l------~pGDt---i---m 116 (413)
T COG0112 64 YGGCEYVDEVEELAIERAKKLFGAEYA-----------NVQPHSGSQANQAVYLAL----L------QPGDT---I---M 116 (413)
T ss_pred cCCCeeHHHHHHHHHHHHHHHhCCCcc-----------ccCCCCchHHHHHHHHHH----c------CCCCe---E---e
Confidence 445567889999999999999999753 234567899998776642 1 24421 1 1
Q ss_pred EEEecCCCchHHH-HHHHHCC-ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 303 VAYCSDQAHSSVE-KAGLIGL-VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 303 vV~~S~~aHySv~-KAa~LG~-~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
-+-.+.-.|-+-. +.-..|. -+++.-++| +++.+|.|++++.+.+.+ |.++++ |....--.-|++++.+
T Consensus 117 gm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k-----PK~ii~--G~SaY~r~id~~~~re- 188 (413)
T COG0112 117 GLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK-----PKLIIA--GGSAYSRPIDFKRFRE- 188 (413)
T ss_pred cccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhC-----CCEEEE--CccccccccCHHHHHH-
Confidence 1223555665543 2212333 255666788 679999999999988873 777774 4444444455777777
Q ss_pred ccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++-|. ++-+|.|+=++
T Consensus 189 -------------------Iad~VGA-------~L~~DmAHiaG 206 (413)
T COG0112 189 -------------------IADEVGA-------YLMVDMAHVAG 206 (413)
T ss_pred -------------------HHHHhCc-------eEEehHHHHHH
Confidence 9999999 99999995443
No 272
>KOG2040|consensus
Probab=98.11 E-value=0.0005 Score=81.45 Aligned_cols=319 Identities=16% Similarity=0.105 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcC-ChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQT-TASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTs-GGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
.+|-...-.||+++-|++.- .|++ +|..+-..+|.+-|.+... .| . ..+-+.+++.
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~~------------s~QPNsGA~GEYaGL~~IRaY~~~------kg---e--~hRnvClIPv 637 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDSF------------SLQPNSGAQGEYAGLRVIRAYLES------KG---E--GHRNVCLIPV 637 (1001)
T ss_pred HHHHHHHHHHhheeecccce------------eecCCCCcccchhhHHHHHHHHHh------cc---C--CcceeEEEee
Confidence 34555666789999999753 2222 2223344566666665432 12 1 1355677888
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc-HHHhhhhcccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-YCCLGTAMIVKGLGF 387 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-L~eIa~~~~~~d~~~ 387 (943)
.+|-...-.+.+.+-+|+.|.++.+|.+|..+|+...++..++ -.++..|..+|. |.+.+ +.++.+
T Consensus 638 SAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~---Laa~MvTYPST~-GvfE~~i~d~cd--------- 704 (1001)
T KOG2040|consen 638 SAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDN---LAALMVTYPSTH-GVFEEGIDDICD--------- 704 (1001)
T ss_pred cccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhh---hheeEEeccccc-ccccccHHHHHH---------
Confidence 8998877766665558999999999999999999988876543 456777888776 67765 888888
Q ss_pred ccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchh
Q psy11047 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467 (943)
Q Consensus 388 ~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r 467 (943)
+.++||- -+.+|||-=-+ .. | +|.+
T Consensus 705 -----------~iHehGG-------QVYlDGANMNA-qV--------G--------------------------lc~p-- 729 (1001)
T KOG2040|consen 705 -----------IIHEHGG-------QVYLDGANMNA-QV--------G--------------------------LCRP-- 729 (1001)
T ss_pred -----------HHHhcCC-------EEEecCCCccc-ee--------c--------------------------ccCC--
Confidence 9999998 79999984222 11 1 2322
Q ss_pred hhhcCCCCeeEEEEcCCCccCccCcchh-----hhhcccCccccccCC---CCcccccCccccCCCCCcc-h--H-HHHH
Q psy11047 468 LRIQGLGRAQNFTIVPSSLLRVKNSGAL-----HRTFNVEPLYLRHEN---SGLAIDYMHWQIPLSKRFR-A--L-KLWF 535 (943)
Q Consensus 468 ~~l~Gie~ADSItiDpHK~L~vr~~~~L-----~~af~~~p~YL~~~~---~g~~~d~~~~tie~SRrfr-A--L-klW~ 535 (943)
|--.+|---++.||.+.++.+.-= ...-+.-++||..-. .+...+-...+--.+-++. | | --|.
T Consensus 730 ----Gd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwa 805 (1001)
T KOG2040|consen 730 ----GDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWA 805 (1001)
T ss_pred ----ccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHH
Confidence 223678888899998874432110 000012234543211 0000000001111111221 2 2 3589
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHh
Q psy11047 536 VIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVL 615 (943)
Q Consensus 536 tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~ 615 (943)
.++.+|..|+...-.-.+ -.|.|.+..|.
T Consensus 806 YikmMG~~GL~~as~~Ai---------------------------------------------------LNaNYMakRLe 834 (1001)
T KOG2040|consen 806 YIKMMGSGGLKDASKIAI---------------------------------------------------LNANYMAKRLE 834 (1001)
T ss_pred HHHHhcccccchhhHHHh---------------------------------------------------hhhHHHHHHHh
Confidence 999999999887655532 23444444444
Q ss_pred CCCCeEEecCCCccEEE--EEec--C----CChHHHHHHHHHhccCcEEEeec-ccCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 616 GDPRFEIPAARHLGMVV--IRLL--G----ENILTEKLLKRLNSKGRLHCVPA-SLRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 616 ~~p~~eIl~~~~l~iV~--Fr~~--g----~n~l~~~Ll~~L~~~G~~~~s~t-~~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
. .++|+....-++|. |-+. + .+.-...+.+||..-|. | +|| +|.-.+.+=+=.--.-+.+++|++.+
T Consensus 835 ~--hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgF-H-aPTmswPV~gtLMIEPTESE~k~ElDRfcd 910 (1001)
T KOG2040|consen 835 S--HYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGF-H-APTMSWPVAGTLMIEPTESEDKAELDRFCD 910 (1001)
T ss_pred h--ccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccC-C-CCccccccCCceEeccCccccHHHHHHHHH
Confidence 4 35565544444443 2221 1 11224678899998884 3 333 45555555552222335689999999
Q ss_pred HHHHHHHHHHHH
Q psy11047 687 EIRNTATEILAE 698 (943)
Q Consensus 687 ~I~~~~~~ll~~ 698 (943)
++..+-++|..-
T Consensus 911 AliSIreEI~~i 922 (1001)
T KOG2040|consen 911 ALISIREEIAQI 922 (1001)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 273
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=98.09 E-value=0.0059 Score=71.45 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
...+..++.++|.+ +.+. +..++|+..+..+|++||+++++.+.++...+
T Consensus 378 ~~~~~~~l~~~Gi~-~~~~---~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 378 AAKVVWRAWELGLI-VTFF---SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred HHHHHHHHHHCCeE-Eeec---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45777888888854 4321 24689999999999999999999999887665
No 274
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=98.09 E-value=0.0014 Score=76.67 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
...+-..+.+++.+.+|..... .....++|+|+|+++-..+++ +- .|| + .|+++.
T Consensus 97 ~~~LR~aiA~~l~~~~~~~~~v------~p~~Ivit~G~t~al~~l~~~-----l~-----~pG--------D-~Vlv~~ 151 (447)
T PLN02607 97 LKSFRQAMASFMEQIRGGKARF------DPDRIVLTAGATAANELLTFI-----LA-----DPG--------D-ALLVPT 151 (447)
T ss_pred hHHHHHHHHHHHHHhcCCCCCc------CHHHeEEcCChHHHHHHHHHH-----hC-----CCC--------C-EEEEcC
Confidence 3455566667777666531110 013688999999997655443 10 122 2 345555
Q ss_pred CCchHHHHHHH-HCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccc
Q psy11047 309 QAHSSVEKAGL-IGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIV 382 (943)
Q Consensus 309 ~aHySv~KAa~-LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~ 382 (943)
-.......... ..+.+++.|+++. .+.+|+++++++++...+.|..+.+++.+-..+-+|.+-+ ++++.+
T Consensus 152 P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~---- 227 (447)
T PLN02607 152 PYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILD---- 227 (447)
T ss_pred CCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHH----
Confidence 45555555443 3445788888763 4579999999999886666766777888888899998876 566666
Q ss_pred cccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 383 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 383 ~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ ++.+|-+|+.+
T Consensus 228 ----------------~~~~~~i-------~lI~DEiYa~~ 245 (447)
T PLN02607 228 ----------------FVVRKNI-------HLVSDEIYSGS 245 (447)
T ss_pred ----------------HHHHCCC-------EEEEecccccc
Confidence 8999999 99999999876
No 275
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=98.08 E-value=0.004 Score=72.97 Aligned_cols=138 Identities=11% Similarity=-0.055 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.....+.+.|++++..+. ....|+.+|||||-.|+..||.+..+ .| ..-++.+...-
T Consensus 117 ~~~~~lAe~L~~~~p~~~----------~~v~f~~SGsEA~e~AlklAr~~t~~------~g-------r~~ii~~~~~y 173 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKL----------KYSFFCNSGTESVEAALKLAKAYQSP------RG-------KFTFIAASGAF 173 (442)
T ss_pred HHHHHHHHHHHHhCCCCc----------CEEEEeCCchHHHHHHHHHHHHHHhh------cC-------CcEEEEECCCc
Confidence 334456666777653221 24689999999999999999975311 01 11233344444
Q ss_pred chHHHHHHHH-C-----------CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HH
Q psy11047 311 HSSVEKAGLI-G-----------LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YC 374 (943)
Q Consensus 311 HySv~KAa~L-G-----------~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~ 374 (943)
|=...-+..+ | ...+..+|.+ |.+++++.|+.....+..+.+|+.--.-...|.+-| ++
T Consensus 174 HG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~ 248 (442)
T TIGR03372 174 HGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLP 248 (442)
T ss_pred cCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHH
Confidence 4332222222 1 1124455543 467888888654333333444444333334466655 88
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++.+ +|++||+ .+.+|-.+.|+
T Consensus 249 ~l~~--------------------lc~~~g~-------llI~DEV~tG~ 270 (442)
T TIGR03372 249 AVRA--------------------LCDEFGA-------LLILDEVQTGM 270 (442)
T ss_pred HHHH--------------------HHHHcCC-------EEEEeecccCC
Confidence 8888 9999999 89999998665
No 276
>PRK06855 aminotransferase; Validated
Probab=98.08 E-value=0.0015 Score=75.73 Aligned_cols=160 Identities=9% Similarity=-0.054 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHH-hccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAI-NCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 205 ~silgd~L~~al-N~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
|..+.+.+..++ +.....|.......++=..+.+|+.+..|++-. ....++|+|++++...++. . +
T Consensus 50 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~--------~~~I~it~G~~~al~~~~~-l----~ 116 (433)
T PRK06855 50 PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQIT--------PDDIIFFNGLGDAIAKIYG-L----L 116 (433)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCC--------HhHEEEcCcHHHHHHHHHH-h----c
Confidence 344445554443 222223333334455666677788777676432 1368899999999765542 1 1
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-CCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-GLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
.+| +. |++.+-+......+..+ .+.+++.+++++ .+.+|+++|++++.... .+.+++.
T Consensus 117 ------~~G--------d~-Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~i~l 177 (433)
T PRK06855 117 ------RRE--------AR-VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNP----SIAGILL 177 (433)
T ss_pred ------CCC--------Ce-EEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCC----CceEEEE
Confidence 122 22 44444444433333332 234677888763 35799999999986421 1345555
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+-||.+-+ +++|.+ +|++||+ |+-.|.+|+..
T Consensus 178 ~~P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~II~De~Y~~l 216 (433)
T PRK06855 178 INPDNPTGAVYPKEILREIVD--------------------IAREYDL-------FIICDEIYNNI 216 (433)
T ss_pred ECCCCCCCcCCCHHHHHHHHH--------------------HHHHcCC-------EEEEecccccc
Confidence 567888998866 555666 8999999 99999999865
No 277
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=98.06 E-value=0.0066 Score=70.94 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=39.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+.+.++|.+ +.+ .+...+|+.....+|++||+++++.++++..++
T Consensus 390 ~~~~~~~~~~~~Gil-~~~---~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 390 LRDKVLYEAFKRGLL-LLG---AGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHHhCCcE-Eec---CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677788888864 433 244689998888899999999999999887654
No 278
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=98.05 E-value=0.0059 Score=70.62 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCcc-EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHLG-MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l~-iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
.+.+.+.++....|.+.. ..+..+ ++.+.+.. ......+.+++.++|.+ +.+.. ....++|+..+...|++|++.
T Consensus 326 ~l~~~l~~l~~~~~~~~~-~vrg~Gl~~~l~l~~-~~~~~~~~~~~~~~Gv~-v~~~~-~~~~~lr~~p~l~~t~~~i~~ 401 (412)
T TIGR02407 326 IIQERLDRIVAEYPELIK-QVRGRGLMQGIECGD-GDLAGKIAKAAFENGLI-IETSG-PNDEVIKLLPPLTIDEETLQQ 401 (412)
T ss_pred HHHHHHHHHHhhCCCceE-eeecceeEEEEEecC-hHHHHHHHHHHHHCCCE-EeccC-CCCCEEEEECCCCCCHHHHHH
Confidence 344455554445554322 222233 34556543 23456788888888964 44321 123589999999999999999
Q ss_pred HHHHHHHHHH
Q psy11047 684 DWNEIRNTAT 693 (943)
Q Consensus 684 ll~~I~~~~~ 693 (943)
+++.+++...
T Consensus 402 ~~~~l~~~l~ 411 (412)
T TIGR02407 402 GLDILEQAVE 411 (412)
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 279
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=98.01 E-value=0.0071 Score=70.00 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=40.8
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+.+.+.++|.+. .+ .+...+|++.+...+++||+.+++.+++...++.
T Consensus 354 ~a~~i~~~l~~~Gvlv-~~---~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 354 QAGAILDLAAEHGLLL-LQ---AGPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred HHHHHHHHHHHCCeEE-ee---CCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888654 33 2557899999999999999999999988876643
No 280
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=97.97 E-value=0.01 Score=68.72 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
....+..++.++|.++.... ....++|+..+...++++|+..++.|.++...
T Consensus 372 ~~~~l~~~~~~~Gv~~~~~~--~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 372 LTAQIVARARDKGLILLSCG--PYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred HHHHHHHHHHhCCCEEecCC--CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 35778888888897654321 11368999888888999999999998887653
No 281
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=97.94 E-value=0.0053 Score=68.82 Aligned_cols=126 Identities=8% Similarity=-0.078 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+++.++++.+ ..++|+|++++...++.+. . .+| + .|++.+-+....
T Consensus 69 ~lr~~ia~~~~~~~~----------~I~it~G~~~al~~~~~~~----~------~~g--------d-~V~v~~P~y~~~ 119 (357)
T PRK14809 69 DLTAALADRWDVSPE----------QVWLANGGDGALDYLARAM----L------DPG--------D-TVLVPDPGFAYY 119 (357)
T ss_pred HHHHHHHHHhCCCcc----------eEEECCCHHHHHHHHHHHh----c------CCC--------C-EEEEeCCChHHH
Confidence 455666777777653 6789999999976554431 1 122 2 244444443333
Q ss_pred HHHHHHCCccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L 392 (943)
..++.+.+..++.++++ +...++.+++++.+. + +.+++.+...+-||.+-+.+++.+
T Consensus 120 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-----~--~k~i~l~~p~NPTG~~~s~~~~~~-------------- 178 (357)
T PRK14809 120 GMSARYHHGEVREYPVSKADDFEQTADTVLDAYD-----G--ERIVYLTSPHNPTGSEIPLDEVEA-------------- 178 (357)
T ss_pred HHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-----C--CcEEEEeCCCCCCCcCCCHHHHHH--------------
Confidence 34444434467777774 345677777766542 1 345666678899999988777776
Q ss_pred cCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 393 QTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 393 ~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++.. +. |+.+|.+|+.+
T Consensus 179 ------l~~~~~~~~-------~iI~De~y~~~ 198 (357)
T PRK14809 179 ------LAERTDEET-------LVVVDEAYGEF 198 (357)
T ss_pred ------HHHhCccCc-------EEEEechhhhc
Confidence 55543 67 89999999865
No 282
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=97.94 E-value=0.0097 Score=68.84 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCCeEEecCCCccEEEEEecC------CChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCH
Q psy11047 605 RLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------ENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTN 678 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g------~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ 678 (943)
++.+.+.+.....|.+.-+. ..-.+..+.+.+ .......+.+.+.++|.+. .+...- ..++|+......++
T Consensus 328 ~l~~~L~~l~~~~~~~~~vr-g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i-~p~~~f-~~~lRl~p~l~~~~ 404 (420)
T TIGR00700 328 LVTDRLTTLKAVDPRIGDVR-GLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLL-LTCGMF-GNIIRFLPPLTIGD 404 (420)
T ss_pred HHHHHHHHHHhhCCCEEEee-ccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEE-eccCCC-CCEEEEECCCCcCH
Confidence 34555555555555443332 223344554422 1234567777888888654 432211 25899977666789
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 679 DDITRDWNEIRNTA 692 (943)
Q Consensus 679 edId~ll~~I~~~~ 692 (943)
++|+++++.|.++.
T Consensus 405 ~~l~~~~~~l~~~l 418 (420)
T TIGR00700 405 ELLSEGLDILCAIL 418 (420)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887764
No 283
>PRK07049 methionine gamma-lyase; Validated
Probab=97.91 E-value=0.0022 Score=74.64 Aligned_cols=131 Identities=17% Similarity=0.066 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 225 ~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
..|....||.. +|++.|.+ ..++++||+.|+..++.+. + .+| -.|
T Consensus 81 ~~Pt~~~Le~~----lA~leg~~------------~~iv~~sG~~Ai~~~l~al----~------~~G---------d~V 125 (427)
T PRK07049 81 NHPNSEIVEDR----LAVYEGAE------------SAALFSSGMSAIATTLLAF----V------RPG---------DVI 125 (427)
T ss_pred CCcCHHHHHHH----HHHHhCCC------------cEEEEccHHHHHHHHHHHH----h------CCC---------CEE
Confidence 45777778774 46777643 4689999999976665432 1 122 235
Q ss_pred EecCCCchHHHHHH-----HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhh
Q psy11047 305 YCSDQAHSSVEKAG-----LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTA 379 (943)
Q Consensus 305 ~~S~~aHySv~KAa-----~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~ 379 (943)
++++.........+ .+| .+++.++. + .|.++++++|.+...+. .+.+|...-.++-+|.+-|++++.+
T Consensus 126 v~~~p~Y~~~~~~~~~~l~~~G-i~~v~~~~---~-~d~~~l~~~l~~~~~~~-~tklv~lesP~NPtg~v~d~~~l~~- 198 (427)
T PRK07049 126 LHSQPLYGGTETLLAKTFRNFG-VGAVGFAD---G-LSEAAIGAAAEAAAAKG-RVSLILIETPANPTNSLVDVAAVRR- 198 (427)
T ss_pred EEcCCCcccHHHHHHHHHHhcC-cEEEEEeC---C-CCHHHHHHHHHhhccCC-CceEEEEECCCCCCCcccCHHHHHH-
Confidence 55665555554432 123 34444441 1 57888888886543222 3667777788889999999999988
Q ss_pred ccccccccccccccCchHHHHHH------cCCCCCccchhhhHHhhhcCC
Q psy11047 380 MIVKGLGFYKMKLQTNFPNFILS------YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 380 ~~~~d~~~~~i~L~RrfR~iar~------~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++. +++ ++.+|.+|.+.
T Consensus 199 -------------------la~~~~~~~~~~~-------~vvvDety~~~ 222 (427)
T PRK07049 199 -------------------VADAIEARQGHRP-------IIACDNTLLGP 222 (427)
T ss_pred -------------------HHHHhhhcccCCC-------EEEEECCcccc
Confidence 7776 788 89999998765
No 284
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=97.90 E-value=0.016 Score=67.63 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
+...+...+.++|.+ +.+... ...++|+.....+|++||+.+++.+++...++++++
T Consensus 384 ~~~~~~~~~~~~Gvl-~~~~~~-~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~~ 440 (442)
T TIGR00709 384 LAAAIQGACFENGLL-LETGGR-EGEVFRLLCPITIDQEECEEGISRFKQAVEEALAEV 440 (442)
T ss_pred HHHHHHHHHHHCCeE-EeecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777788854 443222 236899999899999999999999999988876664
No 285
>PRK07678 aminotransferase; Validated
Probab=97.89 E-value=0.021 Score=66.93 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCcEEEeec---ccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPA---SLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t---~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+.+.++|.+ +.+. ...+..++|+.....+|++||+++++.+.++..++
T Consensus 394 ~a~~i~~~l~~~Gv~-~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 394 KVASVVAACKEKGLI-IGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred HHHHHHHHHHHCCcE-EeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 456777888889964 3332 11234689998888899999999999998876543
No 286
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=97.89 E-value=0.012 Score=68.78 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
....+..++.++|.+ +.+. +..++|+......|++||+.+++.+.++..++.+
T Consensus 380 ~~~~~~~~~~~~Gv~-~~~~---~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 380 AALKICNYCFEHGVV-IIAV---AGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHHHHHCCeE-Eecc---CCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 356777888888864 3321 2358999999999999999999999988876543
No 287
>PRK08637 hypothetical protein; Provisional
Probab=97.87 E-value=0.011 Score=67.22 Aligned_cols=116 Identities=7% Similarity=-0.085 Sum_probs=76.1
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCCccEEEEecC-CCCCcC
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESD-DKLSLR 337 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D-~~grmD 337 (943)
..++|+|++++..+.+.+. . .|| -.|++.+-++.....++ .+.+.+++.+|.+ +++.+|
T Consensus 71 ~I~it~G~~~al~~~~~~l----~------~~g---------d~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d 131 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLF----V------DQG---------DTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFD 131 (388)
T ss_pred eeeEccchHHHHHHHHHHh----c------CCC---------CEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCC
Confidence 4689999999986554431 1 122 23555555665566554 3444578888873 556799
Q ss_pred HHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHH-----cCCCCCc
Q psy11047 338 GDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILS-----YFPKFQS 409 (943)
Q Consensus 338 ~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~-----~Gl~~~~ 409 (943)
++++++.++....+ ...+++.+--.+-||.+-+ +++|.+ +|++ |++
T Consensus 132 ~~~l~~~~~~~~~~--~~~~~~~~~P~NPTG~~~s~~~~~~l~~--------------------~~~~~~~~~~~~---- 185 (388)
T PRK08637 132 TDALKEALQAAYNK--GKVIVILNFPNNPTGYTPTEKEATAIVE--------------------AIKELADAGTKV---- 185 (388)
T ss_pred HHHHHHHHHhhccC--CCEEEEEeCCCCCCCCCCCHHHHHHHHH--------------------HHHHHHhcCCcE----
Confidence 99999988732111 1344555556788887754 566666 6664 899
Q ss_pred cchhhhHHhhhcCC
Q psy11047 410 VRLAQKFEALVLGD 423 (943)
Q Consensus 410 l~lwLHVDAA~GG~ 423 (943)
|+-.|-+|..+
T Consensus 186 ---~iI~De~Y~~l 196 (388)
T PRK08637 186 ---VAVVDDAYFGL 196 (388)
T ss_pred ---EEEecccchhc
Confidence 99999999866
No 288
>PRK06541 hypothetical protein; Provisional
Probab=97.86 E-value=0.011 Score=69.50 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=38.9
Q ss_pred HHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 644 KLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 644 ~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
.+.+.+.++|. ++.+. ..+..++|+.....+|++||+.+++.+.++..++.+
T Consensus 407 ~~~~~l~~~Gi-~~~~~-~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 407 FLSPALFEAGL-YCRAD-DRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred HHHHHHHhCCe-EEEec-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45677778885 44432 124568999888889999999999999998876544
No 289
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=97.85 E-value=0.039 Score=64.31 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+...+.+.+.++|.+. ..+... ..++|+.....+|+++|+++++.|++...++.
T Consensus 370 ~~~~~~~~~~~~Gvl~-~~~g~~-~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 370 FANRVRLKALEKGLIL-LTCGVH-GNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred HHHHHHHHHHHCCeEE-eecCCC-CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888654 322111 36899988888999999999999998876653
No 290
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=97.85 E-value=0.0052 Score=70.73 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 234 IITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 234 ~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++.+.|++++...+ ..+||.||||||..|+.+||.+. | ++-+|.....-|-.
T Consensus 91 ~~lae~l~~~~~~~~-----------~v~~~~sGseA~e~Alk~ar~~~---------g-------r~~ii~~~~~yhG~ 143 (423)
T TIGR00713 91 ILLAKEIISRVPSVE-----------MVRFVNSGTEATMSAVRLARGYT---------G-------RDKIIKFEGCYHGH 143 (423)
T ss_pred HHHHHHHHHhCCccc-----------EEEEeCCHHHHHHHHHHHHHHhh---------C-------CCEEEEEcCCCCCC
Confidence 345666667664322 47899999999999999998642 1 12233334444432
Q ss_pred HHHHHHH-CC------------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc--
Q psy11047 314 VEKAGLI-GL------------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS-- 372 (943)
Q Consensus 314 v~KAa~L-G~------------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp-- 372 (943)
..-+..+ +. ..+..+|- -|+++|++.+.... ..+.+|+..---.++|.+-|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~---~~~aavi~ep~~~~~G~~~~~~ 215 (423)
T TIGR00713 144 HDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEYG---EEIAGVIVEPVAGNMGVVPPKP 215 (423)
T ss_pred hhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHcC---CcEEEEEEeCCCCCCCCcCCCH
Confidence 2222111 00 01222221 17899999887431 12444554322223677755
Q ss_pred --HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 --YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 --L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++.+|-+|.|+
T Consensus 216 ~~l~~l~~--------------------l~~~~~~-------llI~DEv~~g~ 241 (423)
T TIGR00713 216 EFLAGLRA--------------------LTEEYGS-------LLIFDEVMTGF 241 (423)
T ss_pred HHHHHHHH--------------------HHHHhCC-------EEEEEcccccc
Confidence 677777 9999999 99999999776
No 291
>PLN00144 acetylornithine transaminase
Probab=97.85 E-value=0.015 Score=66.70 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
...+..++.++|.+. .+. ....++|+......++++|+.+++.|.++..+
T Consensus 331 ~~~~~~~~~~~Gv~i-~~~--~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 331 AGPLVDACRDSGLLV-LTA--GKGDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred cHHHHHHHHHCCeEE-eec--CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 357888888889654 332 11368999877767899999999999887654
No 292
>PRK07482 hypothetical protein; Provisional
Probab=97.84 E-value=0.022 Score=67.09 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAEL 699 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~ 699 (943)
...+.+.+.++|.+. .+. .+..++|+.....+|++||+++++.+.+...++.+++
T Consensus 405 ~~~i~~~~~~~Gvl~-~~~--~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~~ 459 (461)
T PRK07482 405 GPQVSAAALERGVIA-RAM--PHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVLGRL 459 (461)
T ss_pred HHHHHHHHHHCCcEE-ecC--CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888899643 221 1235899988899999999999999999988775553
No 293
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=97.83 E-value=0.0086 Score=67.33 Aligned_cols=132 Identities=13% Similarity=0.042 Sum_probs=85.3
Q ss_pred cccCChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCC
Q psy11047 222 TWASSPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINS 300 (943)
Q Consensus 222 ~~~~SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~ 300 (943)
.|.......++...+.+|+.+..|.+ -. ....++|+|++++...++.+.. + .+|
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~--------~~~I~it~G~~~~i~~~~~~l~---~------~~g-------- 111 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLD--------PAAVLPVIGSKELVAWLPTLLG---L------GPG-------- 111 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCC--------cccEEEccChHHHHHHHHHHHc---C------CCC--------
Confidence 34433445677788888998887764 22 1368999999999765433210 0 122
Q ss_pred ceEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHh
Q psy11047 301 RLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCL 376 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eI 376 (943)
-.|++.+-+|.+...++. +|. ++..++ +.+++.. ..+.+|+.+-..+-+|.+-+ +++|
T Consensus 112 -d~Vl~~~p~y~~~~~~~~~~g~-~~~~~~-------~~~~l~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i 173 (364)
T PRK07865 112 -DVVVIPELAYPTYEVGARLAGA-TVVRAD-------SLTELGP---------QRPALIWLNSPSNPTGRVLGVDHLRKV 173 (364)
T ss_pred -CEEEECCCCcccHHHHHHhcCC-EEEecC-------ChhhCCc---------ccceEEEEcCCCCCCCccCCHHHHHHH
Confidence 246677778888877775 454 555443 1222221 12556666667788897755 5677
Q ss_pred hhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 377 GTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 377 a~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+ +|+++|+ |+.+|.+|+..
T Consensus 174 ~~--------------------~a~~~~~-------~ii~De~y~~~ 193 (364)
T PRK07865 174 VA--------------------WARERGA-------VVASDECYLEL 193 (364)
T ss_pred HH--------------------HHHHcCC-------EEEEecchhhh
Confidence 77 8999999 99999999865
No 294
>PRK06917 hypothetical protein; Provisional
Probab=97.81 E-value=0.033 Score=65.31 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccCcEEEeeccc----CCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASL----RIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~----~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
....+...+.++|.+. .+... ....++|+.....+|++||+.+++.+.++..++.+
T Consensus 381 ~~~~~~~~~~~~Gvl~-~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 381 VASELISVAAKNGLLL-YPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred HHHHHHHHHHhCCcEE-EecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889654 33211 12358998877889999999999999998877633
No 295
>PLN02672 methionine S-methyltransferase
Probab=97.81 E-value=0.013 Score=75.15 Aligned_cols=134 Identities=12% Similarity=0.045 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCc
Q psy11047 232 LEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAH 311 (943)
Q Consensus 232 LE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aH 311 (943)
+-..+.+|+++..|++... ....++|+|++++...++.+- . .|| + .|++..-+.
T Consensus 735 lr~aLa~~la~~~Gv~~d~-------~e~IIvt~Gs~elL~lll~aL----l------~pG--------D-~VLVp~PtY 788 (1082)
T PLN02672 735 PRPSILQFIKSNYGFPTDS-------CTEFVYGDTSLALFNKLVLCC----V------QEG--------G-TLCFPAGSN 788 (1082)
T ss_pred HHHHHHHHHHHHhCcCCCC-------CCEEEEeCCHHHHHHHHHHHH----c------CCC--------C-EEEEeCCCh
Confidence 4567889999999997531 124666666666554443321 1 122 2 355555566
Q ss_pred hHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCC-Cccccccc---HHHhhhhcccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL-PAFLVVDS---YCCLGTAMIVKGL 385 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT-T~tGaIDp---L~eIa~~~~~~d~ 385 (943)
.....++.+-+.+++.||+++ .+.+|.++|++++.... ..+++.+.-+ +-||.+-+ +++|.+
T Consensus 789 ~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~-----~~~I~L~nPnhNPTG~v~S~eeLe~Lle------- 856 (1082)
T PLN02672 789 GTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVK-----KPWVYISGPTINPTGLLYSNSEIEEILS------- 856 (1082)
T ss_pred HHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCC-----CCEEEEECcCCCCcCccCCHHHHHHHHH-------
Confidence 666666655455888999863 57889999999985421 1234444444 88998855 566666
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+-+|-+|+..
T Consensus 857 -------------la~k~di-------~VIsDEaYsdL 874 (1082)
T PLN02672 857 -------------VCAKYGA-------RVIIDTSFSGL 874 (1082)
T ss_pred -------------HHHHcCC-------EEEEeCCCCcc
Confidence 8999999 99999999865
No 296
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=97.78 E-value=0.022 Score=65.28 Aligned_cols=185 Identities=9% Similarity=-0.047 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCC--hHHHHHHHHHHHHhc-----cCccccCChhHHHHHHHHHHHHHH
Q psy11047 170 KWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNS--YPSLLGDMLSDAINC-----LGFTWASSPACTELEIITMNWLGK 242 (943)
Q Consensus 170 ~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s--~~silgd~L~~alN~-----n~~~~~~SPaateLE~~Vi~wLa~ 242 (943)
.++++.+.+.+.- ..|..+....+-.+.+. ++..+.+.+..+++. ....|...+...++-..+.+|+.+
T Consensus 16 ~~~~~~~~~~~~~----~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~ 91 (409)
T PRK07590 16 LFPEIARRVNAFR----EANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQ 91 (409)
T ss_pred hHHHHHHHHHHHh----hhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHH
Confidence 3566666555432 22334444333222221 234445555555543 223344445566777777788777
Q ss_pred HhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HC
Q psy11047 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IG 321 (943)
Q Consensus 243 LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG 321 (943)
..|++-+ ....++|+|++++... +.. ++ .+| + .|++.+=+......++. .|
T Consensus 92 ~~g~~~~--------~~~I~it~Ga~~al~~-l~~----~~------~~g--------d-~V~v~~P~Y~~~~~~~~~~g 143 (409)
T PRK07590 92 ARGCDIS--------ADEIFISDGAKCDTGN-ILD----IF------GPD--------N-TIAVTDPVYPVYVDTNVMAG 143 (409)
T ss_pred hcCCcCC--------hhhEEECCCHHHHHHH-HHH----hc------CCC--------C-EEEEeCCCCcchHHHHHHcC
Confidence 6666432 1367899999998653 221 11 122 1 24444545555555554 45
Q ss_pred Cc----------cEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccc
Q psy11047 322 LV----------NMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFY 388 (943)
Q Consensus 322 ~~----------~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~ 388 (943)
.. +++.++++.++.+..+. . . ..+.+++.+-..+-||.+-+ +.+|.+
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~-~----~-----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~---------- 203 (409)
T PRK07590 144 RTGEANEDGRYSGIVYLPCTAENNFVPEL-P----E-----EKVDIIYLCFPNNPTGTVLTKEQLKAWVD---------- 203 (409)
T ss_pred CcccccccccccceeEeecccccCCcccC-c----c-----cCceEEEEeCCCCCcCCcCCHHHHHHHHH----------
Confidence 42 37888886443333221 1 0 12555665667788898866 555666
Q ss_pred cccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 389 KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 389 ~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++|++ |+..|.+|+.+
T Consensus 204 ----------~a~~~~~-------~iI~De~Y~~~ 221 (409)
T PRK07590 204 ----------YAKENGS-------LILFDAAYEAF 221 (409)
T ss_pred ----------HHHHcCe-------EEEEEccchhh
Confidence 8999999 99999999865
No 297
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=97.77 E-value=0.015 Score=66.70 Aligned_cols=162 Identities=11% Similarity=-0.041 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhccC-----ccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLG-----FTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGR 279 (943)
Q Consensus 205 ~silgd~L~~alN~n~-----~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR 279 (943)
...+.+.+...++... ..|.......++-..+.+|+.+..|++-. ....++|+|++++...++.+-
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~--------~~~I~it~Ga~~al~~~~~~l- 117 (416)
T PRK09440 47 EDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNIS--------PQNIALTNGSQSAFFYLFNLF- 117 (416)
T ss_pred HHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--------hhhEEEccChHHHHHHHHHHH-
Confidence 3455566655554321 12322223456667778888877776422 136889999999876554421
Q ss_pred HHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HC---CccEEEEecCC---CCCcCHHHHHHHHHHhhccC
Q psy11047 280 TEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IG---LVNMRYIESDD---KLSLRGDKLIEAIERDKKKH 352 (943)
Q Consensus 280 ~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG---~~~v~~Vp~D~---~grmD~daLe~aI~~d~~kG 352 (943)
.. ++- .+ .++.+++..+-+......++. .| ......++++. ...+|+++|+ +..
T Consensus 118 ---~~------~~~--~~-~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~----- 178 (416)
T PRK09440 118 ---AG------RRA--DG-SLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE----- 178 (416)
T ss_pred ---hc------ccc--CC-CCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC-----
Confidence 11 100 00 012233311222222233332 11 11222333333 3579999887 211
Q ss_pred CCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcC
Q psy11047 353 LIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLG 422 (943)
Q Consensus 353 ~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG 422 (943)
.+.+++.+-..+-||.+-+ +++|.+ +|++|++ |+.+|.+|+-
T Consensus 179 -~~~~i~l~~P~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~iI~De~Y~~ 223 (416)
T PRK09440 179 -DTGAICVSRPTNPTGNVLTDEELEKLDA--------------------LARQHNI-------PLLIDNAYGP 223 (416)
T ss_pred -CceEEEEecCCCCCCccCCHHHHHHHHH--------------------HHHHcCC-------cEEEeCCccc
Confidence 2456666677789998866 666677 8999999 9999999963
No 298
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=97.77 E-value=0.018 Score=67.25 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
+...+.+++.++|.+ +.+..-. ..++|+.....+|+++|+++++.|++..++
T Consensus 391 ~~~~l~~~~~~~Gv~-~~~~~~~-~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 391 LTKALAAAAHAAGVI-VLTCGTY-GNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHHHHCCeE-EeccCCC-CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 456777788888864 4432111 258999888889999999999999887643
No 299
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=97.76 E-value=0.012 Score=65.88 Aligned_cols=102 Identities=7% Similarity=-0.149 Sum_probs=74.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHH
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGD 339 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~d 339 (943)
..++|+|++++...++.+. . .|++.+-++.....++.+.+.+++.+|.++++.++..
T Consensus 78 ~i~it~Ga~~~i~~~~~~~---------------------d--~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 134 (335)
T PRK14808 78 NVSVGNGADEIIYVMMLMF---------------------D--RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV 134 (335)
T ss_pred eEEEcCCHHHHHHHHHHHh---------------------C--cEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChh
Confidence 6889999999987665431 0 1444555666677777654558899999887776543
Q ss_pred HHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhh
Q psy11047 340 KLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEAL 419 (943)
Q Consensus 340 aLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA 419 (943)
. +. .+.+++.+...+-||.+-+.+++.+ ++ ++++ |+.+|-+
T Consensus 135 ~----~~-------~~~~i~i~nP~NPTG~~~s~~~l~~--------------------l~-~~~~-------~ii~DE~ 175 (335)
T PRK14808 135 N----VG-------EGDVVFIPNPNNPTGHVFEREEIER--------------------IL-KTGA-------FVALDEA 175 (335)
T ss_pred H----cc-------CCCEEEEeCCCCCCCCCcCHHHHHH--------------------HH-hcCC-------EEEEECc
Confidence 2 11 1356777888999999999999888 77 5788 9999999
Q ss_pred hcCC
Q psy11047 420 VLGD 423 (943)
Q Consensus 420 ~GG~ 423 (943)
|.-+
T Consensus 176 Y~~f 179 (335)
T PRK14808 176 YYEF 179 (335)
T ss_pred hhhh
Confidence 9754
No 300
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=97.76 E-value=0.0012 Score=75.69 Aligned_cols=307 Identities=13% Similarity=0.040 Sum_probs=166.3
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHH-HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASES-TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeA-NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHyS 313 (943)
.++..+-+++|+++. ....+++.+|-- ..++|.+.|.+ |. .+. |+.|...|+|
T Consensus 60 ~l~~d~~~~~G~~~~---------~~~~~vP~atgm~l~l~l~~l~~r---------~~-------a~~-Viw~ridqkS 113 (389)
T PF05889_consen 60 SLVLDALRLAGLRSV---------KSCFVVPMATGMSLTLCLLALRMR---------PK-------AKY-VIWPRIDQKS 113 (389)
T ss_dssp HHHHHHHHHTTHTTH---------CEEEEESS-HHHHHHHHHHHHHHH---------CT---------E-EEEEEEETHH
T ss_pred HHHHHHHHHcCCccc---------cceEEEecccccHHHHHHHHHhcc---------cC-------Cce-EEEeeccccc
Confidence 344455567899754 245667776644 55566655511 21 233 5558899999
Q ss_pred HHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc-ccHHHhhhhcccccccccc
Q psy11047 314 VEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV-DSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 314 v~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI-DpL~eIa~~~~~~d~~~~~ 389 (943)
-.||+...+-+++.||. .+.-..|.+++++.|++. |..+.+++.|.-+-..+-. |++.+|++
T Consensus 114 c~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~Iak----------- 179 (389)
T PF05889_consen 114 CFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAK----------- 179 (389)
T ss_dssp HHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHH-----------
T ss_pred hHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHH-----------
Confidence 99999643336666663 244566888889888654 4456777777666666655 66999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
+|++||+ ..-|-+|||--... --..+++....|++... ...
T Consensus 180 ---------iC~~~~I-------PhlvNnAYgvQ~~~---------------------~~~~i~~a~~~GRvda~--vqS 220 (389)
T PF05889_consen 180 ---------ICKEYDI-------PHLVNNAYGVQSSK---------------------CMHLIQQAWRVGRVDAF--VQS 220 (389)
T ss_dssp ---------HHHHHT---------EEEEGTTTTT-HH---------------------HHHHHHHHHHHSTCSEE--EEE
T ss_pred ---------HHHHcCC-------ceEEccchhhhHHH---------------------HHHHHHHHHhcCCccee--eee
Confidence 9999999 89999999863100 00112222222333211 000
Q ss_pred hcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCCc--chHHHHHHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRF--RALKLWFVIRNFGIKGLQK 547 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrf--rALklW~tLr~~G~~Gl~~ 547 (943)
-.+|.++=.+||-..-.++..+... .-.|= +|-+ ..+-+..++-.+|..||+.
T Consensus 221 ----~dkNF~VPvGgai~As~~~~~i~~v---s~~Yp------------------GRas~sp~ld~~itLl~LG~~g~~~ 275 (389)
T PF05889_consen 221 ----TDKNFMVPVGGAIMASFDPSGILAV---SKEYP------------------GRASASPSLDLFITLLSLGCTGYGA 275 (389)
T ss_dssp ----HHHHHCEESSHEEEEESSHHHHHHH---HHTSH------------------SHBTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCEEecCCCcEEEecCHHHHHHH---HHHhh------------------hhhhcccchHHHHHHHHHhhhHHHH
Confidence 1346666677777665554433211 11121 1222 2355677999999999999
Q ss_pred HHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCCC
Q psy11047 548 HIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARH 627 (943)
Q Consensus 548 ~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~~ 627 (943)
.+...++. |.|+ .+.-++|++.+. -.++..|+
T Consensus 276 ll~~r~~~---------------------------------------f~~l-----~erl~~~aee~~----e~ll~~p~ 307 (389)
T PF05889_consen 276 LLKERKAS---------------------------------------FPYL-----KERLKKWAEEVG----ERLLETPR 307 (389)
T ss_dssp HHHHHHHH---------------------------------------HHHH-----HHHHHHHHHHTT----EEBSSSTT
T ss_pred HHHHHHHH---------------------------------------HHHH-----HHHHHHHHHHhh----hhhcCCCC
Confidence 99985431 1111 122233444332 23333333
Q ss_pred -ccEEEEEecCCCh----HHHHHHHHHhccCc---EEEeec------ccCC--CcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 628 -LGMVVIRLLGENI----LTEKLLKRLNSKGR---LHCVPA------SLRI--QGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 628 -l~iV~Fr~~g~n~----l~~~Ll~~L~~~G~---~~~s~t------~~~g--~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
.-.+.|.+.+... -...|-..|..+|. -.+++. +... ..++-+.+..-++++||+.+++.++++
T Consensus 308 N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~ 387 (389)
T PF05889_consen 308 NHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKI 387 (389)
T ss_dssp -SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHH
T ss_pred CCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3335566654321 12355555665542 212211 0111 246777788899999999999999887
Q ss_pred HH
Q psy11047 692 AT 693 (943)
Q Consensus 692 ~~ 693 (943)
.+
T Consensus 388 i~ 389 (389)
T PF05889_consen 388 IK 389 (389)
T ss_dssp HH
T ss_pred hC
Confidence 53
No 301
>PRK12403 putative aminotransferase; Provisional
Probab=97.75 E-value=0.032 Score=65.71 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=35.3
Q ss_pred HHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 644 KLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 644 ~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
.+.+.+.++|.+.. +. + ..+|+.....+|++||+++++.+.+...++..+
T Consensus 407 ~~~~~~~~~Gll~~-~~---~-~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~~ 456 (460)
T PRK12403 407 RCRTIGFEEGVIIR-ST---L-GRMIMAPALVAGRAEIDELVDKTRIAVDRTARE 456 (460)
T ss_pred HHHHHHHhCCEEEE-ec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677886543 21 2 357777767789999999999999988776544
No 302
>PRK06062 hypothetical protein; Provisional
Probab=97.74 E-value=0.044 Score=64.38 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
...+.+.+.++|.+ +.+ . ..++|+.....+|++||+++++.++++...+
T Consensus 398 ~~~~~~~l~~~Gvl-~~~---~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 398 MAAVKAACKERGLL-PFV---N-GNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHHCCcE-Eee---c-CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 45777888888965 332 1 2479998777899999999999998887653
No 303
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=97.74 E-value=0.014 Score=65.51 Aligned_cols=128 Identities=16% Similarity=0.037 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCC-ccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLP-EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVA 304 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p-~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV 304 (943)
.....++...+.+|+.+..|.+ -. ....++|+|++++...++.+.. . .+| -.|
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~--------~~~I~it~G~~~~i~~~~~~l~---~------~~g---------d~V 108 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLD--------PTAVLPVIGTKELVAWLPTLLG---L------GPG---------DTV 108 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCC--------cCeEEEccChHHHHHHHHHHHc---C------CCC---------CEE
Confidence 3345678888889998887764 22 1367899999998655433210 0 122 236
Q ss_pred EecCCCchHHHHHHH-HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhc
Q psy11047 305 YCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAM 380 (943)
Q Consensus 305 ~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~ 380 (943)
++.+-++.+...++. +|. +++.+ + +.+++. .. .+.+|+.+..++-+|.+-+ +++|.+
T Consensus 109 l~~~p~y~~~~~~~~~~g~-~~~~v--~-----~~~~l~----~~-----~~~~v~~~~p~NPtG~~~~~~~~~~i~~-- 169 (357)
T TIGR03539 109 VIPELAYPTYEVGALLAGA-TPVAA--D-----DPTELD----PV-----GPDLIWLNSPGNPTGRVLSVDELRAIVA-- 169 (357)
T ss_pred EECCCCcHHHHHHHHhcCC-EEecc--C-----ChhhcC----cc-----CccEEEEeCCCCCcCccCCHHHHHHHHH--
Confidence 677888887776664 454 44444 2 222222 11 2556666778888898755 666777
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+.+|.+|+.+
T Consensus 170 ------------------~a~~~~~-------~ii~De~y~~~ 187 (357)
T TIGR03539 170 ------------------WARERGA-------VVASDECYLEL 187 (357)
T ss_pred ------------------HHHHcCe-------EEEEecchhhh
Confidence 9999999 99999999754
No 304
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=97.73 E-value=0.064 Score=62.35 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=37.2
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
....+...+.++|.+.. ++. ....++|+......++++|+++++.|.++.
T Consensus 370 ~~~~l~~~~~~~Gv~i~-~~g-~~~~~irl~P~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 370 IAQKIQQRALAQGLLLL-TCG-AYGNVIRFLYPLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred HHHHHHHHHHHCCcEEe-ecC-CCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 45678888888997542 211 124689998878899999999998888765
No 305
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=97.72 E-value=0.031 Score=62.89 Aligned_cols=124 Identities=11% Similarity=-0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+|+.++.+.+ ..++|+|++++...++.+ +. + ++ .|++.+-+....
T Consensus 61 ~Lr~aia~~~~v~~~----------~I~it~G~~~~i~~~~~~-----l~------~--------g~-~vlv~~P~y~~~ 110 (360)
T PRK07392 61 ELRLALAQHHQLPPE----------WILPGNGAAELLTWAGRE-----LA------Q--------LR-AVYLITPAFGDY 110 (360)
T ss_pred HHHHHHHHHhCcChh----------hEEECCCHHHHHHHHHHH-----hC------C--------CC-eEEEECCCcHHH
Confidence 445566666677654 688999999987655432 10 1 12 355555555566
Q ss_pred HHHHHHCCccEEEEecCCCCC-----cCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLS-----LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~gr-----mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
..++..-+.+++.++.+.++. .+.+++++... .+.+++.+-..+-||.+-+-++|.+
T Consensus 111 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~nP~NPTG~~~~~~~l~~----------- 172 (360)
T PRK07392 111 RRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLT-------PNDGLLLNNPHNPTGKLWSREAILP----------- 172 (360)
T ss_pred HHHHHHcCCeEEEEecccccCCcccccCHHHHHHhcc-------CCCEEEEeCCCCCCCCCcCHHHHHH-----------
Confidence 666654445888899875443 34554443221 2456666678899999988888988
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++++++ .+ +|-+|..+
T Consensus 173 ---------l~~~~~~-------~I-iDE~y~~~ 189 (360)
T PRK07392 173 ---------LLEQFAL-------VV-VDEAFMDF 189 (360)
T ss_pred ---------HHHHCCE-------EE-EECchhhh
Confidence 8988876 45 49999765
No 306
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=97.72 E-value=0.0096 Score=67.82 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=96.6
Q ss_pred HHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhccc
Q psy11047 210 DMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQS 289 (943)
Q Consensus 210 d~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~ 289 (943)
+.|...++..-+.|. -...++-..+.+|..+-.+|... ..+.+|++|---+.-+++- .+ .
T Consensus 45 ~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~--------~e~i~~~p~VVpgi~~~I~----~~------T 104 (388)
T COG1168 45 EALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIK--------PEWIVFVPGVVPGISLAIR----AL------T 104 (388)
T ss_pred HHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCC--------cceEEEcCcchHhHHHHHH----Hh------C
Confidence 444444443322232 33345667789999999988754 1357777765444433322 11 1
Q ss_pred CCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec---CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc
Q psy11047 290 HPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES---DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA 366 (943)
Q Consensus 290 ~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~---D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~ 366 (943)
.+| +.|++- .-..+.+.++...-+.++...|. |..+.||.++|++++.... +.+.+.+-.-+-
T Consensus 105 ~~g--------d~Vvi~-tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP 170 (388)
T COG1168 105 KPG--------DGVVIQ-TPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNP 170 (388)
T ss_pred cCC--------CeeEec-CCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCC
Confidence 233 334443 33555567776555556776664 4566789999999998763 456666677778
Q ss_pred cccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 367 FLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 367 tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|.+ +.|.+|++ +|++||+ .=++==+|.|=.++|.
T Consensus 171 ~Grvwt~eeL~~i~e--------------------lc~kh~v--~VISDEIHaDlv~~g~ 208 (388)
T COG1168 171 TGRVWTKEELRKIAE--------------------LCLRHGV--RVISDEIHADLVLGGH 208 (388)
T ss_pred CCccccHHHHHHHHH--------------------HHHHcCC--EEEeecccccccccCC
Confidence 8877 66888888 9999998 1111125666667664
No 307
>PRK06105 aminotransferase; Provisional
Probab=97.72 E-value=0.019 Score=67.47 Aligned_cols=54 Identities=7% Similarity=-0.072 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
...+...+.++|.+ +.+. + .++|+.....+|++||+++++.+.++..++.+..+
T Consensus 402 a~~i~~~~~~~Gvl-~~~~---g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~~~~ 455 (460)
T PRK06105 402 GARANAAAHEHGVI-SRAM---G-DTLAFCPPLIITAAQVDEMVDRFGRALDDVAAWVA 455 (460)
T ss_pred HHHHHHHHHHCCeE-EEec---C-CEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677778888854 4432 2 48998777778999999999999999887766543
No 308
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=97.69 E-value=0.04 Score=64.91 Aligned_cols=158 Identities=15% Similarity=0.043 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcc----CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINCL----GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 206 silgd~L~~alN~n----~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
..+...+...+... ...+........|=..+.++++...|..-. ....++|+|+++|..+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~--------~~~IiiT~G~q~al~l~~~~---- 174 (459)
T COG1167 107 EALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCE--------PEQIVITSGAQQALDLLLRL---- 174 (459)
T ss_pred HHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccC--------cCeEEEeCCHHHHHHHHHHH----
Confidence 45555555554222 223333344556666777777767777643 13689999999997644322
Q ss_pred HHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcE-EEEE
Q psy11047 282 AIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF-FIFS 360 (943)
Q Consensus 282 ~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~-~VVa 360 (943)
+ ..|| -.|.+-+-+++....+...-+.+++.||+|++| ||+++|++.+.... |. +.+.
T Consensus 175 -l-----~~pG---------d~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~~~-----~k~~y~~ 233 (459)
T COG1167 175 -L-----LDPG---------DTVLVEDPTYPGALQALEALGARVIPVPVDEDG-IDPEALEEALAQWK-----PKAVYVT 233 (459)
T ss_pred -h-----CCCC---------CEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC-CCHHHHHHHHhhcC-----CcEEEEC
Confidence 1 0133 357788889998888886544599999998555 89999999998752 33 3333
Q ss_pred ecCCCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
....+-+|..-+++ +|.+ +|++|++ |+-=|..|+-.
T Consensus 234 P~~qNPtG~tms~~rR~~Ll~--------------------lA~~~~~-------~IIEDD~y~el 272 (459)
T COG1167 234 PTFQNPTGVTMSLERRKALLA--------------------LAEKYDV-------LIIEDDYYGEL 272 (459)
T ss_pred CCCCCCCCCccCHHHHHHHHH--------------------HHHHcCC-------eEEeeCcchhh
Confidence 34566677776654 5555 8999999 99999999866
No 309
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.69 E-value=0.035 Score=64.60 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
+..+.++.+.|++++.. . ....|+++|||||-.|+..||.+. | .+-++.+...
T Consensus 92 ~~~~~~la~~l~~~~p~-~----------~~v~f~~sGseA~e~AlklAr~~t---------g-------r~~ii~~~~~ 144 (428)
T PRK12389 92 TELEIEFAKMLKEAIPS-L----------EKVRFVNSGTEAVMTTIRVARAYT---------G-------RTKIIKFAGC 144 (428)
T ss_pred CHHHHHHHHHHHHhCCC-C----------cEEEEeCCHHHHHHHHHHHHHHhh---------C-------CCEEEEECCC
Confidence 34455666777776631 1 257899999999999999999752 1 1123333444
Q ss_pred CchHHHHHHHH-CC------------------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc
Q psy11047 310 AHSSVEKAGLI-GL------------------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 310 aHySv~KAa~L-G~------------------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI 370 (943)
-|=...-++.+ |. ..+..+|-+ |.++|++.|+... ..+.+|+.----...|.+
T Consensus 145 yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~---~~vaavi~EPv~g~~G~~ 216 (428)
T PRK12389 145 YHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFN-----DIEALKEALDKWG---DEVAAVLVEPIVGNFGIV 216 (428)
T ss_pred cCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCC-----CHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCc
Confidence 44332222211 10 122333322 6889998887432 224444444333445667
Q ss_pred cc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 371 DS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 371 Dp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-| +.++.+ +|++||+ .+.+|-.+.|+
T Consensus 217 ~p~~~yl~~l~~--------------------lc~~~g~-------llI~DEV~tG~ 246 (428)
T PRK12389 217 EPKPGFLEAVNE--------------------LAHEAGA-------LVIYDEVITAF 246 (428)
T ss_pred CCCHHHHHHHHH--------------------HHHHcCC-------EEEEEcccccc
Confidence 66 888888 9999999 99999998877
No 310
>KOG1359|consensus
Probab=97.69 E-value=0.0033 Score=69.26 Aligned_cols=290 Identities=14% Similarity=0.106 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC
Q psy11047 231 ELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA 310 (943)
Q Consensus 231 eLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a 310 (943)
.+-+..-..+|++=|-+ +-++.+++-.||.-++-+- + + ++..||.-+.-
T Consensus 112 ~iHk~LE~kiAqfh~rE------------D~ilypscfdANag~feai----l------~---------pedAvfSDeLN 160 (417)
T KOG1359|consen 112 DIHKLLESKIAQFHGRE------------DTILYPSCFDANAGAFEAI----L------T---------PEDAVFSDELN 160 (417)
T ss_pred HHHHHHHHHHHHHhCCC------------ceEEeccccccchHHHHHh----c------C---------hhhhhhccccc
Confidence 33344444567766554 3467788888885443321 1 1 22346666789
Q ss_pred chHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc-ccccccHHHhhhhcccccccccc
Q psy11047 311 HSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA-FLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 311 HySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~-tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
|.|+....+|-. -.+.+|+..|+..+.+.-. .-+-+|+|-|... -|-|-|+++|..
T Consensus 161 hASIIdGirLck---------ry~h~dv~~l~~~l~~a~k---~r~klv~TDg~FSMDGdiaPl~ei~~----------- 217 (417)
T KOG1359|consen 161 HASIIDGIRLCK---------RYRHVDVFDLEHCLISACK---MRLKLVVTDGVFSMDGDIAPLEEISQ----------- 217 (417)
T ss_pred cchhhhhhHHHh---------hhccchhHHHHHHHHHhhh---heEEEEEecceeccCCCcccHHHHHH-----------
Confidence 999887765532 3456778888876654322 1356777776543 589999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhh
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLR 469 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~ 469 (943)
++++||. .+.+|-|++-+ .| | ++|. ...+.
T Consensus 218 ---------La~kYga-------LlfiDecHaTg-f~--------G---------------------~tGr----Gt~E~ 247 (417)
T KOG1359|consen 218 ---------LAKKYGA-------LLFIDECHATG-FF--------G---------------------ETGR----GTAEE 247 (417)
T ss_pred ---------HHHhcCc-------EEEEeecccce-ee--------c---------------------CCCC----ChHHH
Confidence 9999999 99999999866 22 1 0000 01111
Q ss_pred hcCCCCeeEEEEcCCCccC------ccCcchhhhhc-ccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHH
Q psy11047 470 IQGLGRAQNFTIVPSSLLR------VKNSGALHRTF-NVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542 (943)
Q Consensus 470 l~Gie~ADSItiDpHK~L~------vr~~~~L~~af-~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~ 542 (943)
+.-...+|-|.-...|-++ +-.+.-+.+.+ ...-+||+... ++-+=-.-+.|++..+...
T Consensus 248 ~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llrqr~RpylFSns-----------lppavV~~a~ka~dllm~s-- 314 (417)
T KOG1359|consen 248 FGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQRSRPYLFSNS-----------LPPAVVGMAAKAYDLLMVS-- 314 (417)
T ss_pred hCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHHhcCCceeecCC-----------CChhhhhhhHHHHHHHHhh--
Confidence 2112456777777777666 22222222222 12335665421 1110001122332222111
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEE
Q psy11047 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI 622 (943)
Q Consensus 543 ~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eI 622 (943)
.+.|.+ .....++|.+... ..+|.|
T Consensus 315 ---~~~i~~---------------------------------------------------~~a~~qrfr~~me-~aGftI 339 (417)
T KOG1359|consen 315 ---SKEIQS---------------------------------------------------RQANTQRFREFME-AAGFTI 339 (417)
T ss_pred ---HHHHHH---------------------------------------------------HHHHHHHHHHHHH-hcCcee
Confidence 111111 1123444544443 358888
Q ss_pred ecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe---ecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 623 PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV---PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 623 l~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s---~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
....+. +|=-..|...+..++.+.|.++|...+. |+.-.++.-+|+.++...|++|||++++++.++++.
T Consensus 340 sg~~hP--I~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 340 SGASHP--ICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred cCCCCC--ccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 774432 2222335556677888889999975543 334457778999888888999999999999988764
No 311
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.019 Score=65.55 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=82.5
Q ss_pred HHHHHHHHhC-CCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 236 TMNWLGKMIG-LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 236 Vi~wLa~LlG-~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
....+++..| .+.+ ..+++.|++|..-..+.+.. .+| +. |+++.-+-..-
T Consensus 62 l~~a~a~~~~~~~~~----------~V~~gnGsde~i~~l~~~~~----------~~g--------d~-vl~~~Ptf~~Y 112 (356)
T COG0079 62 LRAALAEYYGVVDPE----------NVLVGNGSDELIELLVRAFV----------EPG--------DT-VLIPEPTFSMY 112 (356)
T ss_pred HHHHHHHHhCCCCcc----------eEEEcCChHHHHHHHHHHhh----------cCC--------CE-EEEcCCChHHH
Confidence 4445677777 4432 35557777777643333211 122 22 33333333333
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccC
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
..++..-+.+++.|+.++ +.+|.+++.+++.++ +.+|..+--++-||..-+.++|.+
T Consensus 113 ~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~~------~~lv~i~nPNNPTG~~~~~~~l~~---------------- 169 (356)
T COG0079 113 EIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRDK------TKLVFLCNPNNPTGTLLPREELRA---------------- 169 (356)
T ss_pred HHHHHhcCCeEEEecccc-cccCHHHHHHhhhcC------CCEEEEeCCCCCCCCCCCHHHHHH----------------
Confidence 445555555899999988 999999999999874 567888889999999988887777
Q ss_pred chHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++... +. ++-||-||.-+
T Consensus 170 ----l~~~~~~~~-------~vVvDEAY~eF 189 (356)
T COG0079 170 ----LLEALPEGG-------LVVIDEAYIEF 189 (356)
T ss_pred ----HHHhCCCCc-------EEEEeCchhhc
Confidence 55432 66 79999999755
No 312
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=97.66 E-value=0.046 Score=64.10 Aligned_cols=48 Identities=8% Similarity=-0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
...+.+++.++|.+ +.+ ...++|+.....+|++||+++++.++++..+
T Consensus 396 ~~~~~~~~~~~Gv~-~~~----~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 396 GYEAFMKCFEKGLL-VRY----TGDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred HHHHHHHHHHCCeE-Eee----cCCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 35677888888854 432 2258999888889999999999999887654
No 313
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=97.66 E-value=0.015 Score=67.12 Aligned_cols=354 Identities=15% Similarity=0.083 Sum_probs=190.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCceeEEccCCCChHHHHH-HHHHH--HHhccCccc--cCCh--hHHHHHHHHHHH
Q psy11047 167 EPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLG-DMLSD--AINCLGFTW--ASSP--ACTELEIITMNW 239 (943)
Q Consensus 167 ~G~~~e~iL~~l~~~I~~~~~~~~sPrf~g~~~~~~s~~silg-d~L~~--alN~n~~~~--~~SP--aateLE~~Vi~w 239 (943)
.+.+-.+++.++.+...... ..+.|.|-=+-+.-.|+++- .++.. .+-.+ -.| +.|- .-..+|.+ ..
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~---~~~sfiG~GyY~~~~P~vI~rnile~pewyTaY-TPYQpEISQGrLqaLfefQ--tl 128 (450)
T COG0403 55 KPLSEYEALAELKEIASKNK---VFTSFIGAGYYDTYTPPVILRNILENPEWYTAY-TPYQPEISQGRLEALFEFQ--TL 128 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCc---hhhhhccCcccCCcCcHHHHHHhhcCccccccC-CCCchhhhhHHHHHHHHHH--HH
Confidence 34588899999988654332 34556443222223455554 44431 11100 011 1111 12233333 46
Q ss_pred HHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH
Q psy11047 240 LGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL 319 (943)
Q Consensus 240 La~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~ 319 (943)
+++|.|++-. ..-+--+||.+- .|+..|+.... .++-.++++...|........
T Consensus 129 v~dLTGm~VA----------NASm~DeaTAaA-EAm~ma~r~~k---------------~k~~~~~V~~~vhpqt~~Vl~ 182 (450)
T COG0403 129 VADLTGLDVA----------NASMLDEATAAA-EAMLMAKRVTK---------------KKRNKFLVPKDVHPQTLDVLR 182 (450)
T ss_pred HHHHhCCCcc----------cchhhhhHHHHH-HHHHHHHHhhc---------------CcCceEEecCCCCHHHHHHHH
Confidence 8999999854 233445566543 55555543210 013458899999998776663
Q ss_pred ---HCC-ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhccccccccccccccCc
Q psy11047 320 ---IGL-VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN 395 (943)
Q Consensus 320 ---LG~-~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~i~L~Rr 395 (943)
-|. .++..++.+ |.++|++. ... -.+.|+....++.-+.+.++.+|.+
T Consensus 183 Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~-----~~~gv~vQyP~~~G~~~~d~~~l~~----------------- 234 (450)
T COG0403 183 TRAEGLGIEIEVVDAD-----DLDDLESA-DDG-----DVFGVLVQYPNTFGIVEEDLRALIE----------------- 234 (450)
T ss_pred hhcccCceEEEEeccc-----hhhhhhhc-ccc-----CeEEEEEecCCCCCccchhHHHHHH-----------------
Confidence 132 356666654 78888877 321 1566777666644337777999999
Q ss_pred hHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhhcCCCC
Q psy11047 396 FPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGR 475 (943)
Q Consensus 396 fR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l~Gie~ 475 (943)
.++++|. .+-| +.. +..|++ +-|+ |--.
T Consensus 235 ---~~h~~~a-------l~~v----~aD-------plaL~L-------------------------L~pP------Ge~G 262 (450)
T COG0403 235 ---AAHSAGA-------LVIV----AAD-------PLALGL-------------------------LKPP------GEFG 262 (450)
T ss_pred ---HHhhcCC-------EEEE----Eec-------hhHhhc-------------------------cCCc------cccC
Confidence 8888876 3322 111 011110 1122 2225
Q ss_pred eeEEEEcCCCccC---ccCcchhhhhcccCcccccc-CC--CCccccc-C--cccc--C----CCCCcc-----------
Q psy11047 476 AQNFTIVPSSLLR---VKNSGALHRTFNVEPLYLRH-EN--SGLAIDY-M--HWQI--P----LSKRFR----------- 529 (943)
Q Consensus 476 ADSItiDpHK~L~---vr~~~~L~~af~~~p~YL~~-~~--~g~~~d~-~--~~ti--e----~SRrfr----------- 529 (943)
||-+.-|.+-++- +-.+ ....|...-.|.+. ++ -|...|- + -|.+ + -=||-.
T Consensus 263 ADIvvG~~QrfGvPmgfGGP--hag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaL 340 (450)
T COG0403 263 ADIVVGSAQRFGVPMGFGGP--HAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQAL 340 (450)
T ss_pred CceEEecCcccCCCcCCCCc--ceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHH
Confidence 7777777666655 1111 00111111122111 00 0100110 0 0111 1 112322
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHH
Q psy11047 530 -ALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQ 608 (943)
Q Consensus 530 -ALklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~ 608 (943)
|+..-+.+-++|.+|+++..++ .++++.
T Consensus 341 lA~~As~y~~~hGp~GLk~iA~r---------------------------------------------------~~~~a~ 369 (450)
T COG0403 341 LALAASMYAVYHGPQGLKEIAER---------------------------------------------------IHRLAA 369 (450)
T ss_pred HHHHHHHHHHHhChHHHHHHHHH---------------------------------------------------HHHHHH
Confidence 2223334567899999988888 357888
Q ss_pred HHHHHHhCCC-CeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHH
Q psy11047 609 KFEALVLGDP-RFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNE 687 (943)
Q Consensus 609 ~l~~~L~~~p-~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~ 687 (943)
++++.|.++. +++++.+.-++-+.+++.. +..+.|+++-...|.-. .. + +...+=+.+.-.+|++||+.+|+.
T Consensus 370 ~la~~L~~~~~g~~~~~~~fFdt~~v~~~~--~~~~~l~~~~~~~G~~L-~~--~-~~~~~~ia~tEt~t~~~i~~l~~~ 443 (450)
T COG0403 370 YLAAGLKEIGAGVELVFDHFFDTFTVRVPE--EVAEALLAAAIAGGINL-RR--V-DADTVLIALTETTTKEDIDALVAA 443 (450)
T ss_pred HHHHHHhhcCCceEeccccceeeEEEecch--hHHHHHHHHHHhcCCce-ee--e-cCCceEEEeecccCHHHHHHHHHH
Confidence 9999998664 6999988889999999863 45677777776666421 10 1 112233456677889999999998
Q ss_pred HHHH
Q psy11047 688 IRNT 691 (943)
Q Consensus 688 I~~~ 691 (943)
+...
T Consensus 444 ~~~~ 447 (450)
T COG0403 444 FGGV 447 (450)
T ss_pred Hhhh
Confidence 8654
No 314
>PRK05965 hypothetical protein; Provisional
Probab=97.64 E-value=0.043 Score=64.63 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
+...+.+++.++|.+. .+ .+..++|+.....+|++||+++++.+.+...++.+
T Consensus 398 ~~~~i~~~~~~~Gll~-~~---~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 398 PADRIFDRAYANGLVF-RA---FGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred HHHHHHHHHHhCCeEE-Ee---cCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3456777788888654 32 24568999888889999999999999998877633
No 315
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=97.64 E-value=0.036 Score=64.86 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
....+.+.+.++|.+. .+.... ..++|+......++++|+.+++.|.+...++..
T Consensus 392 ~~~~l~~~~~~~Gvlv-~~~~~~-~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 392 LTANICKEANKRGLLL-LSAGTY-GNVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred HHHHHHHHHHHCCeEE-eecCCC-CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888654 332111 258999776668899999999999988876533
No 316
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=97.60 E-value=0.076 Score=61.74 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
+...+.+++.++|. ++.+....+ .++|+......++++|+++++.|.+..
T Consensus 370 ~~~~l~~~~~~~Gv-~i~~~~~~g-~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 370 FTRQYQRQALEEGL-LLLSCGVHG-NVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred HHHHHHHHHHhCCe-EEeecCCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45566677778885 455432222 589997766789999999998887763
No 317
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=97.59 E-value=0.15 Score=60.22 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+.+.+.++|.+ +.+. -.+..++|+......|++||+.+++.+++....+.
T Consensus 392 ~~~~~~~~~~~~Gv~-~~~~-g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 392 LTGKICWRAFELGLI-LPSY-GMFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred HHHHHHHHHHhCCeE-Eeec-CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 456777888888864 4432 11246899999999999999999999999987653
No 318
>PRK08354 putative aminotransferase; Provisional
Probab=97.58 E-value=0.0079 Score=66.43 Aligned_cols=115 Identities=10% Similarity=-0.044 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
+++++++.+|- ..++|+|++++....+.. +. +| ..|++.+-+++...
T Consensus 45 l~~~ia~~~~~-------------~I~vt~G~~~al~~~~~~-----~~------~g---------d~vlv~~P~y~~~~ 91 (311)
T PRK08354 45 LEEEFSKLFGE-------------PIVITAGITEALYLIGIL-----AL------RD---------RKVIIPRHTYGEYE 91 (311)
T ss_pred HHHHHHHHHCC-------------CEEECCCHHHHHHHHHHh-----hC------CC---------CeEEEeCCCcHHHH
Confidence 45688888872 378999999997544321 10 12 23667778888888
Q ss_pred HHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH---Hhhhhccccccccccccc
Q psy11047 316 KAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC---CLGTAMIVKGLGFYKMKL 392 (943)
Q Consensus 316 KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L 392 (943)
+++.+-+.+++.+ .+|++.|++.++. +.+++.+...+-+|.+-+.+ +|.+
T Consensus 92 ~~~~~~g~~~~~~------~~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~-------------- 144 (311)
T PRK08354 92 RVARFFAARIIKG------PNDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLD-------------- 144 (311)
T ss_pred HHHHHcCCEEeec------CCCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHH--------------
Confidence 8885433355544 3578888877652 23456667788999987754 5555
Q ss_pred cCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 393 QTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 393 ~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ |+.+|.+|+.+
T Consensus 145 ------~a~~~~~-------~li~De~y~~f 162 (311)
T PRK08354 145 ------AVEDRNA-------LLILDEAFIDF 162 (311)
T ss_pred ------HhhhcCc-------EEEEeCcchhc
Confidence 7889999 99999999876
No 319
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=97.58 E-value=0.02 Score=65.44 Aligned_cols=108 Identities=10% Similarity=-0.038 Sum_probs=67.4
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCc-----------cEEEE
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLV-----------NMRYI 328 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~-----------~v~~V 328 (943)
..++|+|++++... +. + .+. +| + .|++.+-++.....++..-+. .+..|
T Consensus 97 ~I~it~Ga~~al~~-l~-~---l~~------~g--------d-~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v 156 (402)
T TIGR03542 97 EIFISDGAKCDVFR-LQ-S---LFG------SD--------N-TVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYL 156 (402)
T ss_pred HEEECCCcHHHHHH-HH-H---hcC------CC--------C-EEEEeCCCCcchHHHHHHcCCccccccccccceEEEe
Confidence 68899999998754 22 1 111 22 1 244455555555666543333 77778
Q ss_pred ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCC
Q psy11047 329 ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFP 405 (943)
Q Consensus 329 p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl 405 (943)
++++.+.++.+. .+ . ..+.+|+.+-..+-||.+-+ +++|.+ +|++||+
T Consensus 157 ~~~~~~~~~~~~-~~---~-----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~--------------------~a~~~~~ 207 (402)
T TIGR03542 157 PCTKENNFIPDL-PE---E-----PKIDIIYLCSPNNPTGTVLTKEQLKELVD--------------------YANEHGS 207 (402)
T ss_pred ecchhhCCCCCc-cc---c-----CCceEEEEeCCCCCCCccCCHHHHHHHHH--------------------HHHHcCe
Confidence 876443333321 11 0 12456666678888998866 667777 8999999
Q ss_pred CCCccchhhhHHhhhcCC
Q psy11047 406 KFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 406 ~~~~l~lwLHVDAA~GG~ 423 (943)
|+.+|.+|+-+
T Consensus 208 -------~iI~De~y~~~ 218 (402)
T TIGR03542 208 -------LILFDAAYSAF 218 (402)
T ss_pred -------EEEEEchhhhh
Confidence 99999999865
No 320
>PLN02368 alanine transaminase
Probab=97.58 E-value=0.0014 Score=75.87 Aligned_cols=148 Identities=10% Similarity=-0.045 Sum_probs=102.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCce
Q psy11047 223 WASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302 (943)
Q Consensus 223 ~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~ 302 (943)
|..+....+|-..+.+|+.+..|++-. ....++|+|++++...++.+.. . .+| +
T Consensus 103 Y~~~~G~~~LR~aia~~~~~~~g~~~~--------~~~I~it~Ga~~al~~~~~~l~----~-----~pG--------d- 156 (407)
T PLN02368 103 YSDSRGLPGVRKEVAEFIERRDGYPSD--------PELIFLTDGASKGVMQILNAVI----R-----GEK--------D- 156 (407)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCC--------hhhEEEcccHHHHHHHHHHHHc----C-----CCC--------C-
Confidence 333334456777788888887786522 1368999999999876655421 0 122 2
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEecCC--CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDD--KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~--~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++.+=+......++.+-+.+++.+++++ ++.+|+++|+++++....++..+.+++.+-..+-||.+-+ +++|.
T Consensus 157 ~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~ 236 (407)
T PLN02368 157 GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 236 (407)
T ss_pred EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHH
Confidence 245555566566666654334888888864 4789999999999864333334667777778889998866 55566
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++|++ |+-.|-+|+..
T Consensus 237 ~--------------------~a~~~~~-------~II~DE~Y~~l 255 (407)
T PLN02368 237 K--------------------FCYQERL-------VLLGDEVYQQN 255 (407)
T ss_pred H--------------------HHHHcCC-------EEEEEcccccc
Confidence 6 8999999 99999999865
No 321
>PRK07480 putative aminotransferase; Validated
Probab=97.57 E-value=0.046 Score=64.36 Aligned_cols=53 Identities=13% Similarity=-0.036 Sum_probs=40.1
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
..+..++.++|.+. .+. + .++|+.....+|++||+++++.+.+...++.++++
T Consensus 402 ~~~~~~~~~~Gll~-~~~---~-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~~~ 454 (456)
T PRK07480 402 TICRDHCFANGLIM-RAV---G-DRMIISPPLVITHAEIDELVEKARKALDATAAELG 454 (456)
T ss_pred HHHHHHHHHCCcEE-eec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667788888654 321 2 47898777778999999999999999888766553
No 322
>PRK07481 hypothetical protein; Provisional
Probab=97.57 E-value=0.098 Score=61.46 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
+...+.+++.++|.+ +.+. + ..+|+.....+|++||+.+++.+.+...++
T Consensus 397 ~~~~~~~~~~~~Gvl-~~~~---g-~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 397 YANAVADVARENGVL-VRPS---G-TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred HHHHHHHHHHhCCeE-EEec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345677778888864 4332 2 357877666789999999999998887553
No 323
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.03 Score=66.99 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=91.5
Q ss_pred HHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHH
Q psy11047 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVE 315 (943)
Q Consensus 236 Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~ 315 (943)
..+..|+.||.+.. -.++.|.|-||...+.+.- .+| -.|++....|-|+.
T Consensus 75 Aqe~aA~~fgAd~t-----------yFvvNGTS~ank~vi~a~~----------~~G---------D~VLvdRN~HKSi~ 124 (557)
T COG1982 75 AQELAARVFGADHT-----------YFVVNGTSTANKAVINAVL----------TPG---------DKVLVDRNCHKSIH 124 (557)
T ss_pred HHHHHHHHhCCCce-----------EEEECCccHHHHHHHHhhc----------CCC---------CEEEecCCccHHHH
Confidence 34456899999865 3567777777866655421 122 35788999999999
Q ss_pred HHHHH-CCccEEEEecCC-----CCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhcccccccccc
Q psy11047 316 KAGLI-GLVNMRYIESDD-----KLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYK 389 (943)
Q Consensus 316 KAa~L-G~~~v~~Vp~D~-----~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~~~~d~~~~~ 389 (943)
-+..+ |...|...|.-+ -|.++.+.+.+++.+..... .+++.|. .|.-|.+-++++|.+
T Consensus 125 ~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitn-pTYdGv~~n~~~i~~----------- 189 (557)
T COG1982 125 HGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITN-PTYDGVCYNLRKIVE----------- 189 (557)
T ss_pred HHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEec-CccceEeecHHHHHH-----------
Confidence 99766 444555555433 46889999998887664321 3555554 456689999999999
Q ss_pred ccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 390 MKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 390 i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+..+++ |+-+|-|.+..
T Consensus 190 ---------~~~~~~a-------~v~~deah~~~ 207 (557)
T COG1982 190 ---------LLHHYGA-------WVLYDEAHPAH 207 (557)
T ss_pred ---------HHhhcCc-------eEEhhhcCccc
Confidence 9999999 99999999876
No 324
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=97.55 E-value=0.012 Score=68.35 Aligned_cols=133 Identities=17% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
-+++|.++.+.+.++++.-+ ..-|+++||||++.|+..||-.-- .+.+|-+..
T Consensus 91 Pte~Ei~~Aell~~~~p~~e-----------~vrfvnSGTEAtmsAiRlARa~Tg----------------R~kIikF~G 143 (432)
T COG0001 91 PTELEVELAELLIERVPSIE-----------KVRFVNSGTEATMSAIRLARAYTG----------------RDKIIKFEG 143 (432)
T ss_pred CCHHHHHHHHHHHHhcCccc-----------EEEEecchhHHHHHHHHHHHHhhC----------------CCeEEEEcC
Confidence 36788888888888886532 467999999999999999996421 122333444
Q ss_pred CCchH----HHHHH----HHCC-----------ccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc
Q psy11047 309 QAHSS----VEKAG----LIGL-----------VNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV 369 (943)
Q Consensus 309 ~aHyS----v~KAa----~LG~-----------~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa 369 (943)
.-|-+ ..||. .+|. ..++.+|-+ |+++++++++... ....+|+.----.+.|.
T Consensus 144 ~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g---~~IAaVIvEPv~gn~g~ 215 (432)
T COG0001 144 CYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYG---DDIAAVIVEPVAGNMGV 215 (432)
T ss_pred CCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcC---CcEEEEEeccccCCCCC
Confidence 44433 33322 1221 134555654 5999999998752 23566666666667788
Q ss_pred ccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 370 VDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 370 IDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|-| ++++.+ +|+++|. .+..|=-..|+
T Consensus 216 i~p~~~Fl~~Lr~--------------------lt~e~G~-------lLI~DEViTGF 246 (432)
T COG0001 216 VPPEPGFLEGLRE--------------------LTEEHGA-------LLIFDEVITGF 246 (432)
T ss_pred CCCCHHHHHHHHH--------------------HHHHcCc-------EEEEecchhhc
Confidence 877 555666 9999999 88888887776
No 325
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=97.54 E-value=0.043 Score=65.03 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
++.|.++.+.|++++..- ....|+.+|||||..|+..||.+
T Consensus 138 ~~~~~~lAe~l~~~~p~~-----------~~v~f~~SGsEA~e~AlklAR~~ 178 (474)
T PLN02482 138 CLLENVLAEMVIDAVPSV-----------EMVRFVNSGTEACMGVLRLARAY 178 (474)
T ss_pred CHHHHHHHHHHHHhCCCC-----------CEEEEeCChHHHHHHHHHHHHHh
Confidence 456677788888887321 25789999999999999999964
No 326
>PRK06149 hypothetical protein; Provisional
Probab=97.54 E-value=0.044 Score=70.24 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
....+.+++.++|.+ +.++.. ...++|+.....+|++||+.+++.+.++..+
T Consensus 919 ~~~~i~~~l~~~Gvl-~~~~g~-~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 919 ETAAICDRLLELGVI-MQPTGD-HLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHhCCeE-EeecCC-CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 356778888888864 444311 1358998777789999999999999987653
No 327
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.53 E-value=0.043 Score=63.72 Aligned_cols=134 Identities=13% Similarity=0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCC
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQ 309 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~ 309 (943)
...+..+.++|++++... ....||.||||||..|+..||... | .+-+|.....
T Consensus 89 ~~~~~~la~~L~~~~~~~-----------~~v~~~~sGseA~e~Aik~a~~~~---------g-------~~~ii~~~~~ 141 (426)
T PRK00062 89 TELEVELAELVIELVPSI-----------EMVRMVNSGTEATMSAIRLARGYT---------G-------RDKIIKFEGC 141 (426)
T ss_pred CHHHHHHHHHHHHhCCCC-----------CEEEEecCHHHHHHHHHHHHHHHh---------C-------CCeEEEEcCc
Confidence 344556777777776311 247899999999999999998641 1 1224444555
Q ss_pred CchHHHHHHHH--------CCc---cE-E-----EEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc
Q psy11047 310 AHSSVEKAGLI--------GLV---NM-R-----YIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS 372 (943)
Q Consensus 310 aHySv~KAa~L--------G~~---~v-~-----~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp 372 (943)
-|-...-+..+ +.. .+ . .+.... -|+++|++.+.... ..+.+|+.--...+.|.+-|
T Consensus 142 yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~i~~~~---~~~aaiivEpv~~~~G~~~~ 215 (426)
T PRK00062 142 YHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY---NDLEAVEELFEEYG---DEIAAVIVEPVAGNMGVVPP 215 (426)
T ss_pred cCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC---CCHHHHHHHHHhCC---CcEEEEEEeCCcCCCCCcCC
Confidence 56543222211 100 00 0 111111 26889998886532 12445554433444677766
Q ss_pred ----HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 ----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 ----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+++|.+ +|++||+ ++.+|-++.|+
T Consensus 216 ~~~~l~~l~~--------------------l~~~~~~-------llI~DEv~~G~ 243 (426)
T PRK00062 216 KPGFLEGLRE--------------------LCDEHGA-------LLIFDEVMTGF 243 (426)
T ss_pred CHHHHHHHHH--------------------HHHHcCC-------EEEEeechhcc
Confidence 888888 9999999 99999999866
No 328
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=97.52 E-value=0.02 Score=67.08 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
...+.+++.++|.+ +.. .+ ..+|+.....+|++||+++++.+.++..++
T Consensus 393 ~~~~~~~l~~~Gvl-~~~---~~-~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 393 AYEVFLKCFEKGLM-IRY---TG-DILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred HHHHHHHHHHCCcE-EEe---cC-CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 45677788888864 432 12 579998888899999999999998877553
No 329
>PRK07036 hypothetical protein; Provisional
Probab=97.52 E-value=0.071 Score=62.99 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
...+.+.+.++|.+. .+. + .++|+.....+|++||+++++.+.++..++.+++.
T Consensus 405 ~~~~~~~~~~~Gvl~-~~~---~-~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~~~~ 458 (466)
T PRK07036 405 GQRIDRHCQERGLLV-RPL---E-HLCVLSPPLIITRAQIDEIVAILRAAIEETADELA 458 (466)
T ss_pred HHHHHHHHHHCCcEE-eec---C-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888654 332 2 46787766778999999999999999888766654
No 330
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.50 E-value=0.16 Score=59.77 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
+...+.+++.++|.+. .+. + .++|+.....+|++||+++++.+++...++.++
T Consensus 398 ~~~~i~~~~~~~Gll~-~~~---g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~ 450 (453)
T PRK06943 398 FSRRFFEAALERELLL-RPI---G-TTVYLMPPYVLDDDEIAWLAERTRATLDATLAE 450 (453)
T ss_pred HHHHHHHHHHHCCcEE-Eec---C-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888889654 332 2 369998888899999999999999998877444
No 331
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=97.50 E-value=0.037 Score=64.47 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=41.7
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
..++.+.+.+. .....+.++|.++|. ++.+. + .++|+.....+|++||+++++.+++...
T Consensus 366 G~~~~i~~~~~-~~~~~~~~~l~~~Gv-~~~~~---~-~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 366 GAIGVVEMYKP-VNVEELQKKFVEQGV-WIRPF---G-KLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred ccEEEEEECCc-cCHHHHHHHHHHCCe-EEEec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 34455555422 224678888888885 45432 2 3788887778999999999999988753
No 332
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.48 E-value=0.02 Score=67.02 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
....+...|.++|. ++.+..... .+++...|++||+++++++++....+.
T Consensus 381 ~~~~~~~~l~~~Gv-~~~~~~~~~-----~~ls~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 381 AFQTFYQSAFSKGV-YLSPSPFEA-----SFLSSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred HHHHHHHHHHHCCe-eecCccccc-----cceecCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567788888885 444321111 245666799999999999999987764
No 333
>PRK07483 hypothetical protein; Provisional
Probab=97.48 E-value=0.1 Score=61.26 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCcEEEeecc--cCC--CcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPAS--LRI--QGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~--~~g--~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
....+.+++.++|.+.. +.. ..+ ..++|+.....+|++||+++++.|++...++++.
T Consensus 381 ~~~~~~~~~~~~Gll~~-~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~~ 441 (443)
T PRK07483 381 LHARIKREAMARGLMVY-PMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALAA 441 (443)
T ss_pred HHHHHHHHHHHCCcEEE-ecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888997543 221 111 3589998888899999999999999998776653
No 334
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=97.47 E-value=0.05 Score=63.44 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=42.1
Q ss_pred ccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHH
Q psy11047 628 LGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN 690 (943)
Q Consensus 628 l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~ 690 (943)
..++.+.+.+. .....+.+++.++|.+ +.+ .+...+|+..+..+|++||+++++.+.+
T Consensus 373 G~~~~i~~~~~-~~~~~~~~~l~~~Gvl-~~~---~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 373 GLMCAFDLPST-ADRDEVIRQLYREGVL-LLG---CGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ceeEEEEeCCH-HHHHHHHHHHHhCCeE-Eec---CCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 34556666432 3456788888888864 443 2346799999999999999999998875
No 335
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=97.47 E-value=0.093 Score=61.73 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=161.5
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-----------C--CccEE
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-----------G--LVNMR 326 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-----------G--~~~v~ 326 (943)
--.|+.+|||||=.|+..||.+.- ..-+|-....-|=...-++-+ | ...+.
T Consensus 119 ~~~f~~sGaeA~E~AiKiAr~~Tg----------------r~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~ 182 (447)
T COG0160 119 KVFFGNSGAEAVEAAIKIARAYTG----------------RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVY 182 (447)
T ss_pred eEEecCCcHHHHHHHHHHHHHHhC----------------CCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeE
Confidence 578999999999999999997531 112333445555444433321 1 12477
Q ss_pred EEecCCCCC------------cCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccc
Q psy11047 327 YIESDDKLS------------LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKM 390 (943)
Q Consensus 327 ~Vp~D~~gr------------mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i 390 (943)
.+|-....+ -..+.+++.|.........|.++++=---.+.|.+-| ++++.+
T Consensus 183 ~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~------------ 250 (447)
T COG0160 183 HVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRK------------ 250 (447)
T ss_pred EecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHH------------
Confidence 777543222 2334455656655555555666666544455566655 777777
Q ss_pred cccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHhhccCcccccchhhhh
Q psy11047 391 KLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRI 470 (943)
Q Consensus 391 ~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l~~~G~~~~p~~r~~l 470 (943)
+|++||+ .+.+|-.+.|+-+ +|+.+.-++
T Consensus 251 --------~~~~~gi-------llI~DEVQtG~GR--------------------------------TG~~fa~E~---- 279 (447)
T COG0160 251 --------LCREHGI-------LLIADEVQTGFGR--------------------------------TGKMFAFEH---- 279 (447)
T ss_pred --------HHHHcCC-------EEEEeccccCCCc--------------------------------cccchhhhh----
Confidence 9999999 9999999998722 233333222
Q ss_pred cCCCCeeEEEEcCCCccC--ccCcchhhhhcccCccccccCCCCcccccCccccCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy11047 471 QGLGRAQNFTIVPSSLLR--VKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKH 548 (943)
Q Consensus 471 ~Gie~ADSItiDpHK~L~--vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRrfrALklW~tLr~~G~~Gl~~~ 548 (943)
.|+ .-|-||+. |.++ .+=...+ ..++... ...|. ..+|+ ++.+..+...-++|..+=.+++.++
T Consensus 280 ~gv-~PDivt~a--K~ig~G~Pl~avv-----~r~ei~~-~~~g~----~~~Tf-~GNpva~Aaa~AvL~vie~e~L~~~ 345 (447)
T COG0160 280 FGV-EPDIVTLA--KSLGGGLPLSAVV-----GRAEIMD-WPPGG----HGGTF-GGNPVACAAALAVLDVIEEENLLER 345 (447)
T ss_pred cCC-CCCEEEec--ccccCCCceeEEe-----ccHHhcc-cCCcc----cCCCC-CcCHHHHHHHHHHHHHHHHccHHHH
Confidence 255 46777764 5444 1111111 0111111 00000 01121 2223333333345665555555555
Q ss_pred HHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHHHHhCCCCeEEecCC-C
Q psy11047 549 IREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAAR-H 627 (943)
Q Consensus 549 I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~~L~~~p~~eIl~~~-~ 627 (943)
...+ ...|.+.|.++-.+.| ++.++ -
T Consensus 346 a~~~--------------------------------------------------G~~l~~~L~~l~~~~~---~IgdVRG 372 (447)
T COG0160 346 AAEL--------------------------------------------------GEYLRDRLEELQEKHP---LIGDVRG 372 (447)
T ss_pred HHHH--------------------------------------------------HHHHHHHHHHHHhhcC---ceecccc
Confidence 5552 2345555555555554 33332 2
Q ss_pred ccE---EEEEec-----CCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 628 LGM---VVIRLL-----GENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 628 l~i---V~Fr~~-----g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
.|+ |-|.-+ +..++..++.+++.++|.+..+. . ....++|+..--..+++++|..++.|.++..++
T Consensus 373 ~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~-G-~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 373 LGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTC-G-PHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred cceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEecc-C-CCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 222 122211 11267889999999999866542 1 125699998888899999999999999876653
No 336
>PRK06148 hypothetical protein; Provisional
Probab=97.46 E-value=0.039 Score=70.99 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=40.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~l 695 (943)
....+.+++.++|.+ +.++.. ...++|+.....+|++||+++++.+.++..++
T Consensus 959 ~~~~i~~~~~~~Gvl-~~~~g~-~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 959 IARYVKNGARERGIL-IGTEGP-HDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHhCCeE-EeccCC-CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 456788888888864 443211 13689999889999999999999999887654
No 337
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=97.46 E-value=0.2 Score=59.34 Aligned_cols=60 Identities=12% Similarity=-0.044 Sum_probs=43.3
Q ss_pred CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 627 ~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
..-++.+.+.+ ......+.+.+.++|.+ +.+. +..++|+.....+|++||+.+++.|.++
T Consensus 404 ~Glm~gie~~~-~~~~~~i~~~~~~~Gvl-~~~~---g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 404 RGTFIAWDTPD-EAKRDKLLKKARNNGVN-IGGC---GVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred eEEEEEEecCC-HHHHHHHHHHHHHCCcE-EecC---CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34455666542 23456788888888864 4332 4568999999999999999999988764
No 338
>KOG1357|consensus
Probab=97.43 E-value=0.003 Score=72.95 Aligned_cols=169 Identities=9% Similarity=0.010 Sum_probs=105.7
Q ss_pred CCCCCceeEEccCC-CChHHHHHHHHHHHHhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCC
Q psy11047 188 HWQSPYMHAYFPAL-NSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTT 266 (943)
Q Consensus 188 ~~~sPrf~g~~~~~-~s~~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsG 266 (943)
+..|=.|+||-.+. +..++.+..+-...++.+....+.+ ++++-.++-+-+|+++|.++. -+|..|
T Consensus 140 NlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G--~~~~hkelE~l~A~f~g~e~a-----------~vF~mG 206 (519)
T KOG1357|consen 140 NLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAG--TTEEHKELEELVARFLGVEDA-----------IVFSMG 206 (519)
T ss_pred eecccccccccccCCcCChHHHHHHHHhcccccccchhcc--cHHHHHHHHHHHHHhcCCcce-----------EEEecc
Confidence 44566777775433 3344555444444444443333332 344555566677999999864 455555
Q ss_pred -hHHH-HHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHH
Q psy11047 267 -ASES-TLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEA 344 (943)
Q Consensus 267 -GTeA-NL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~a 344 (943)
||-| |+.+|+ .+..-|+.-+..|-|+.-.|+|.+..++...-+ |...|++.
T Consensus 207 f~TNs~~~p~l~----------------------~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~ 259 (519)
T KOG1357|consen 207 FATNSMNIPSLL----------------------GKGSLIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERL 259 (519)
T ss_pred ccccccCcceee----------------------cCCcceeeccccchheeccccccCceEEEEecC-----CHHHHHHH
Confidence 1212 111111 122346667789999999998877677776654 36777877
Q ss_pred HHHhhccCC----Cc--EEEEEecCCC-cccccccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 345 IERDKKKHL----IP--FFIFSGLALP-AFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 345 I~~d~~kG~----~P--~~VVaTaGTT-~tGaIDpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
|++....|. .| .++++.-|-. ..|.++++.++.+ ++++|.. ++|+|
T Consensus 260 Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vva--------------------lkkkyka-------yl~lD 312 (519)
T KOG1357|consen 260 LRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVA--------------------LKKKYKA-------YLYLD 312 (519)
T ss_pred HHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHH--------------------hhccccE-------EEEee
Confidence 776554441 11 1344444444 7799999999999 9999999 99999
Q ss_pred hhhcCC
Q psy11047 418 ALVLGD 423 (943)
Q Consensus 418 AA~GG~ 423 (943)
.|+..+
T Consensus 313 EAHSiG 318 (519)
T KOG1357|consen 313 EAHSIG 318 (519)
T ss_pred cccccc
Confidence 998776
No 339
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.41 E-value=0.036 Score=64.71 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=44.2
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
++.+.+... .....+.++|.++|. ++.+. + .++|+.....+|++||+.+++.++++..++.
T Consensus 367 ~~~iel~~~-~~~~~i~~~l~e~Gi-~v~~~---g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 367 IGVVEMKEP-VNMATLQPRFVEHGI-WVRPF---G-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred EEEEEeCCc-ccHHHHHHHHHHCCe-EEEec---C-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 444555432 224678888888885 44432 3 4899988888999999999999999877654
No 340
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.023 Score=65.58 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
...+.+.+..+|.+... .+..++|+...--++++||+..++.++++.....
T Consensus 350 a~~~~~~~~~~gvL~~~----a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 350 ARDIVRALREEGVLVLP----AGPNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred HHHHHHHHHHCCeEEec----CCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 57788889999965433 2455999999899999999999999999877654
No 341
>PRK08297 L-lysine aminotransferase; Provisional
Probab=97.38 E-value=0.11 Score=60.85 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCCe--EEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 606 LAQKFEALVLGDPRF--EIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 606 LA~~l~~~L~~~p~~--eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
+.+.+.++..+.|.+ ++- ..-.++.+.+.+ ......+.+++.++|.+ +.+. +..++|+.....+|++||+.
T Consensus 358 l~~~L~~l~~~~~~~~~~vr--g~G~~~~i~~~~-~~~~~~~~~~l~~~Gvl-~~~~---~~~~lr~~P~l~~t~~eid~ 430 (443)
T PRK08297 358 LLARLEELAAEFPAVVSNVR--GRGLMCAFDLPT-TADRDEVIRRLWEEGVL-VLPC---GERSIRFRPALTVTTEEIDA 430 (443)
T ss_pred HHHHHHHHHHHCCCcceeee--ccceEEEEEecC-HHHHHHHHHHHHHCCEE-EecC---CCCeEEEECCccCCHHHHHH
Confidence 344444444444433 221 234455666643 23456788888888864 4332 34579998888899999999
Q ss_pred HHHHHHHHHHH
Q psy11047 684 DWNEIRNTATE 694 (943)
Q Consensus 684 ll~~I~~~~~~ 694 (943)
+++.+.++..+
T Consensus 431 ~l~~l~~~l~~ 441 (443)
T PRK08297 431 AIDALRRALPE 441 (443)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 342
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=97.38 E-value=0.32 Score=57.41 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
...+...+.++|.+. .++ +..++|+.....+|++||+++++.+++...++.+
T Consensus 403 ~~~~~~~~~~~Gvl~-~~~---~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 403 AEAVLYRCLNNGLSF-KVS---QGNVIQLSPPLIITREELTQALAILEEAIAKICQ 454 (459)
T ss_pred HHHHHHHHHhCCCEE-Eec---CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888654 332 3468999887788999999999999998877643
No 343
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.37 E-value=0.12 Score=61.01 Aligned_cols=49 Identities=12% Similarity=-0.092 Sum_probs=39.1
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.+++.++|.+ +.+. + .++|+.....+|++||+.+++.+++...+++
T Consensus 400 ~~i~~~~~~~Gvl-~~~~---g-~~i~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (466)
T PRK07030 400 LKVYQHALERGAL-LRPL---G-SVVYFLPPYVITPEQIDFLAEVASEGIDIAT 448 (466)
T ss_pred HHHHHHHHHCCeE-EEec---C-CEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 4677788888864 4332 3 4799988889999999999999999988873
No 344
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=97.36 E-value=0.07 Score=59.99 Aligned_cols=79 Identities=11% Similarity=-0.005 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHH
Q psy11047 607 AQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWN 686 (943)
Q Consensus 607 A~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~ 686 (943)
.+++.+.|++. ++++. +..+.+.+++. + ..++.+.|.++|.+. ... ....++|+++. .+.++.+++++
T Consensus 258 r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--~--~~~l~~~l~~~GI~v-r~~--~~~~~lRisi~--~~~~e~~~l~~ 325 (339)
T PRK06959 258 GARLAALLRAH-GFAVH--ATPLFSWTDDP--R--AAALHAALARRGIWT-RYF--APPPSVRFGLP--ADEAEWQRLED 325 (339)
T ss_pred HHHHHHHHHHC-CCCcc--CcceEEEEeCC--C--HHHHHHHHHhCCeEE-EEC--CCCCeEEEECC--CCHHHHHHHHH
Confidence 34555566555 45554 22333334432 2 467888899988643 322 33458999652 35579999999
Q ss_pred HHHHHHHHHHH
Q psy11047 687 EIRNTATEILA 697 (943)
Q Consensus 687 ~I~~~~~~ll~ 697 (943)
+|+++.+.+.+
T Consensus 326 al~~~~~~~~~ 336 (339)
T PRK06959 326 ALAECVPTLAA 336 (339)
T ss_pred HHHHHHHHHhh
Confidence 99887766554
No 345
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.34 E-value=0.16 Score=59.97 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ 694 (943)
..+..++.++|.+ +.+. + .++|+.....+|++||+.+++.+++...+
T Consensus 409 ~~i~~~~~~~Gvl-~~~~---g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 409 VQVCKRSRELGML-TRPL---G-NTIVFMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred HHHHHHHHHCCeE-EEec---C-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 4677788888854 4332 2 48999888899999999999999887654
No 346
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.32 E-value=0.049 Score=68.85 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITR 683 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ 683 (943)
++.|.++++.|.+ +++++..++-++-+.+++ +.. ..++.++-.++|.-+.. . +...+.+++.-.+|.+|++.
T Consensus 362 ~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~-~~~--~~~~~~~a~~~~~n~r~---~-~~~~~~~s~de~~~~~~~~~ 433 (954)
T PRK12566 362 HRLTAILAAGLEA-KGIKRLNRHFFDTLTLEV-GGA--QAAIIESAEAARINLRI---L-GRGRLGVSLDETCDEATVAR 433 (954)
T ss_pred HHHHHHHHHHHHh-cCCccccCCccceEEEEc-cCC--HHHHHHHHHHCCCeeEE---e-CCCeEEEEeCCCCCHHHHHH
Confidence 5678888888888 799999888788888887 312 45677766666653322 1 23468889999999999999
Q ss_pred HHHHHH
Q psy11047 684 DWNEIR 689 (943)
Q Consensus 684 ll~~I~ 689 (943)
+++.+.
T Consensus 434 ~~~~f~ 439 (954)
T PRK12566 434 LFDIFL 439 (954)
T ss_pred HHHHhc
Confidence 999885
No 347
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=97.30 E-value=0.34 Score=57.38 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=39.1
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
+...+...+.++|.+. .+.. ....++|+......|++||+.+++.+.+...++.
T Consensus 409 ~~~~~~~~~~~~Gll~-~~~g-~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 409 LASLIQRECLRRGLIL-ELGG-RHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred HHHHHHHHHHHCCeEE-eecC-CCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 3456777788888643 3321 1235899988888999999999999998876643
No 348
>PRK05839 hypothetical protein; Provisional
Probab=97.30 E-value=0.18 Score=57.24 Aligned_cols=134 Identities=4% Similarity=-0.147 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC
Q psy11047 229 CTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308 (943)
Q Consensus 229 ateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~ 308 (943)
..++-..+.+|+++..|.+-. ....++|+|++++....+.+.. .. . +...|++..
T Consensus 62 ~~~lr~aia~~l~~~~g~~~~--------~~~I~it~G~~~al~~~~~~~~---~~-----~---------~gd~vlv~~ 116 (374)
T PRK05839 62 EESLREAQRGFFKRRFKIELK--------ENELIPTFGTREVLFNFPQFVL---FD-----K---------QNPTIAYPN 116 (374)
T ss_pred CHHHHHHHHHHHHHHhCCCCC--------cceEEEecCcHHHHHHHHHHHh---cC-----C---------CCCEEEECC
Confidence 346666788888888785421 1367899999988755443210 00 0 112355555
Q ss_pred CCchHHHHHHHHCCccEEEEecCCC--CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhcccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVK 383 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~--grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~ 383 (943)
-+......++...+.+++.++.+++ +.+|..+. .+. + +.+|+.+--.+-||.+-+ +++|.+
T Consensus 117 P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~~-----~--~k~v~i~nP~NPTG~~~s~~~l~~i~~----- 182 (374)
T PRK05839 117 PFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--ELQ-----E--VDLVILNSPNNPTGRTLSLEELIEWVK----- 182 (374)
T ss_pred CCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hhc-----c--ccEEEEeCCCCCcCcccCHHHHHHHHH-----
Confidence 5666666666544458899998754 44444432 221 1 456666677788898866 556666
Q ss_pred ccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 384 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 384 d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|++||+ |+-+|-+|+..
T Consensus 183 ---------------~~~~~~~-------~ii~DE~Y~~~ 200 (374)
T PRK05839 183 ---------------LALKHDF-------ILINDECYSEI 200 (374)
T ss_pred ---------------HHHHcCC-------EEEeccchhhc
Confidence 8999999 99999999864
No 349
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=97.25 E-value=0.099 Score=61.14 Aligned_cols=46 Identities=11% Similarity=-0.039 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
...+.+.+.++|.+ +.+. + .++|+.....+|++||+++++.+.+..
T Consensus 376 ~~~~~~~l~~~Gl~-~~~~---g-~~i~~~Ppl~it~~ei~~~~~~l~~~l 421 (428)
T PRK07986 376 MAALQRFFVEQGVW-IRPF---G-KLIYLMPPYIILPEQLQRLTAAVNRAV 421 (428)
T ss_pred HHHHHHHHHHCCcE-EEec---C-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45778888888864 4332 3 489998888899999999999988774
No 350
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=97.24 E-value=0.46 Score=56.14 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILA 697 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~ 697 (943)
...+.+.+.++|.+ +.+.. ....++|+.....+|++||+.+++.+.+...++.+
T Consensus 404 ~~~~~~~~~~~Gvl-~~~~~-~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 404 AAAIQKACFENGLL-LERGG-RNGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred HHHHHHHHHHCCcE-EeecC-CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888865 33321 12368999888899999999999999998776554
No 351
>PRK07046 aminotransferase; Validated
Probab=97.10 E-value=0.23 Score=58.56 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHH
Q psy11047 230 TELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTE 281 (943)
Q Consensus 230 teLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~ 281 (943)
++.|.++.+.|+++++++ ...|+.+||||+..|+..||.+
T Consensus 114 ~~~~~~lAe~l~~~~~~~------------~v~F~nSGtEA~e~AlrlAR~~ 153 (453)
T PRK07046 114 SEDAAWVGEELARRFGLP------------YWQVATTATDANRFVLRWARAV 153 (453)
T ss_pred CHHHHHHHHHHHHHhCCC------------EEEEECCHHHHHHHHHHHHHHh
Confidence 567777888888888542 4689999999999999999964
No 352
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=97.10 E-value=0.22 Score=55.60 Aligned_cols=114 Identities=4% Similarity=-0.185 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
..++.+++.+|.+ ..++|+|++++...++.+ .+| + .|++.+-+....
T Consensus 53 ~Lr~~ia~~~~~~------------~I~it~Gs~~al~~~~~~------------~~g--------d-~v~v~~P~y~~~ 99 (330)
T PRK05664 53 GLEAAARAYYGAP------------QLLPVAGSQAAIQALPRL------------RAP--------G-RVGVLSPCYAEH 99 (330)
T ss_pred HHHHHHHHHhCCC------------CEEECcCHHHHHHHHHHc------------cCC--------C-EEEEcCCChHHH
Confidence 3466777877742 478999999997554211 122 2 355566666666
Q ss_pred HHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHH---Hhhhhcccccccccccc
Q psy11047 315 EKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYC---CLGTAMIVKGLGFYKMK 391 (943)
Q Consensus 315 ~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~---eIa~~~~~~d~~~~~i~ 391 (943)
..++...+.+++.||.+ ++++.+.. +.+++.+..++-||.+-+.+ +|.+
T Consensus 100 ~~~~~~~g~~~~~v~~~--------~~~~~~~~-------~~~v~l~nP~NPTG~~~s~~~l~~l~~------------- 151 (330)
T PRK05664 100 AHAWRRAGHQVRELDEA--------EVEAALDS-------LDVLVVVNPNNPTGRRFDPARLLAWHA------------- 151 (330)
T ss_pred HHHHHHcCCeEEEechh--------hHhhhhcC-------CCEEEEeCCcCCCCCccCHHHHHHHHH-------------
Confidence 77775444477778763 34444431 23455556778899886644 4555
Q ss_pred ccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 392 LQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 392 L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.|+++|. |+-+|-+|..+
T Consensus 152 -------~~~~~~~-------~iI~DE~y~~~ 169 (330)
T PRK05664 152 -------RLAARGG-------WLVVDEAFMDN 169 (330)
T ss_pred -------HHHhcCC-------EEEEECCcccC
Confidence 7788999 99999998644
No 353
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.08 E-value=0.39 Score=57.02 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=38.2
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.+++.++|.+ +.+. + .++|+.....+|++||+.+++.+++...++.
T Consensus 421 ~~~~~~~~~~Gll-~~~~---g-~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 421 LHAYRAALARGVV-LRPL---G-DVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred HHHHHHHHHCCeE-EEec---C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566777788864 3332 3 5899988888999999999999999877654
No 354
>PLN02590 probable tyrosine decarboxylase
Probab=97.08 E-value=0.00033 Score=83.75 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=90.8
Q ss_pred CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc------cccHHHhh----hhccccccccccccccCchH-----H
Q psy11047 334 LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV------VDSYCCLG----TAMIVKGLGFYKMKLQTNFP-----N 398 (943)
Q Consensus 334 grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa------IDpL~eIa----~~~~~~d~~~~~i~L~RrfR-----~ 398 (943)
..++.-+..++|.-|.||++...+-|+.+-...... .++ .-+. +.....|+++|+++++|||| +
T Consensus 338 ~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~-~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~ 416 (539)
T PLN02590 338 KFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNP-EYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWM 416 (539)
T ss_pred HHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCH-HHhCCcccccccCCCccccCCCCCCchHHHHHHH
Confidence 344455556777788888865555555443333221 111 1111 00125789999999999999 5
Q ss_pred HHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecc-------hhhhHHHHHHHhhccCcccccc
Q psy11047 399 FILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG-------ENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 399 iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~-------~ne~n~kll~~l~~~G~~~~p~ 465 (943)
..+.||.++ +++++.-++-......+.|||++++.+++||||+.. .|++|++|+++++++|++++..
T Consensus 417 ~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~ 496 (539)
T PLN02590 417 VLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISH 496 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 567788876 556666666555666667999999999999999963 3788999999999999997765
Q ss_pred h
Q psy11047 466 A 466 (943)
Q Consensus 466 ~ 466 (943)
.
T Consensus 497 t 497 (539)
T PLN02590 497 T 497 (539)
T ss_pred e
Confidence 4
No 355
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.08 E-value=0.34 Score=56.56 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=40.4
Q ss_pred EEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 630 MVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 630 iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
++.+.+.+.. ....+.+.+.++|.+ +.+. + .++|+.....+|++||+++++.+++...
T Consensus 362 ~~~ie~~~~~-~~~~~~~~~~~~Gl~-~~~~---g-~~l~~~PpL~it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 362 IGVVEMEQPV-DMEEATQAAVDHGVW-LRPF---G-RLVYVMPPYITTSEQIAQICAALAAAVK 419 (422)
T ss_pred EEEEEECCcc-cHHHHHHHHHHCCeE-EEec---C-CEEEEECCccCCHHHHHHHHHHHHHHHh
Confidence 4455554321 145777788888854 4332 3 5899988888999999999999988754
No 356
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=97.08 E-value=0.23 Score=57.02 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q psy11047 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEIL 696 (943)
Q Consensus 643 ~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll 696 (943)
..+.+++.++|.+. .+ .+..++|+.....+|++|++.+++.|++...+++
T Consensus 313 ~~i~~~~~~~Gll~-~~---~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 313 GKYVEELQNRGYLV-HT---AGQRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred HHHHHHHHhCCcEE-ee---CCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 56777888888653 33 2446899988888999999999999999887654
No 357
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.05 E-value=0.14 Score=59.40 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred cCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 224 ASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 224 ~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
...|....+|..+ +.|=|. ..++.+++|..|...++++- + .+| -.
T Consensus 60 ~~nPT~~~lE~~~----a~LEg~------------~~~~afsSGmaAI~~~~l~l----l------~~G---------D~ 104 (396)
T COG0626 60 TGNPTRDALEEAL----AELEGG------------EDAFAFSSGMAAISTALLAL----L------KAG---------DH 104 (396)
T ss_pred CCCccHHHHHHHH----HHhhCC------------CcEEEecCcHHHHHHHHHHh----c------CCC---------CE
Confidence 3467888888754 555444 25788899988877665531 1 122 23
Q ss_pred EEecCCCchHHHHHH-H-H--CCccEEEEecCCCCCcCHHHHHHHHHH-hhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 304 AYCSDQAHSSVEKAG-L-I--GLVNMRYIESDDKLSLRGDKLIEAIER-DKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 304 V~~S~~aHySv~KAa-~-L--G~~~v~~Vp~D~~grmD~daLe~aI~~-d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
|++++...-...+-+ . + .+..+..+.. .+.+++++++.+ + +.+|..=..|+.+.-+-||.+|++
T Consensus 105 vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~-----~~~~~~~~~~~~~~------tk~v~lEtPsNP~l~v~DI~~i~~ 173 (396)
T COG0626 105 VLLPDDLYGGTYRLFEKILQKFGVEVTFVDP-----GDDEALEAAIKEPN------TKLVFLETPSNPLLEVPDIPAIAR 173 (396)
T ss_pred EEecCCccchHHHHHHHHHHhcCeEEEEECC-----CChHHHHHHhcccC------ceEEEEeCCCCcccccccHHHHHH
Confidence 555555544444433 2 2 3445555544 245566666654 3 667777788888899999999999
Q ss_pred hccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 379 AMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 379 ~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+-||-.|+..
T Consensus 174 --------------------~A~~~g~-------~vvVDNTfatP 191 (396)
T COG0626 174 --------------------LAKAYGA-------LVVVDNTFATP 191 (396)
T ss_pred --------------------HHHhcCC-------EEEEECCcccc
Confidence 9999999 99999999876
No 358
>KOG0259|consensus
Probab=96.94 E-value=0.29 Score=56.22 Aligned_cols=111 Identities=12% Similarity=0.010 Sum_probs=78.6
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEec--CCCchHHHHHHHHCCccEEEEe--cCCCC
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS--DQAHSSVEKAGLIGLVNMRYIE--SDDKL 334 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S--~~aHySv~KAa~LG~~~v~~Vp--~D~~g 334 (943)
.+.++|+|-+.|.-+++.+- . +|| .-|+.+ ...||... |...|. ++|+.. ++.++
T Consensus 127 ~DV~ltsGC~qAIe~~i~~L-----A-----~p~---------aNILlPrPGfp~Y~~~-a~~~~l-EVR~ydlLPe~~w 185 (447)
T KOG0259|consen 127 DDVVLTSGCSQAIELAISSL-----A-----NPG---------ANILLPRPGFPLYDTR-AIYSGL-EVRYYDLLPEKDW 185 (447)
T ss_pred CceEEeccchHHHHHHHHHh-----c-----CCC---------CceecCCCCCchHHHh-hhhcCc-eeEeecccCcccc
Confidence 47899999999988877641 1 233 113332 33444321 112343 555543 46899
Q ss_pred CcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc---ccHHHhhhhccccccccccccccCchHHHHHHcCCCCCccc
Q psy11047 335 SLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV---DSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVR 411 (943)
Q Consensus 335 rmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI---DpL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~ 411 (943)
++|++.+|..++++ +++++..-..+-+|.+ +.|++|++ +|+++|+
T Consensus 186 eIDL~~veal~DEN------T~AivviNP~NPcGnVys~~HL~kiae--------------------~A~klgi------ 233 (447)
T KOG0259|consen 186 EIDLDGVEALADEN------TVAIVVINPNNPCGNVYSEDHLKKIAE--------------------TAKKLGI------ 233 (447)
T ss_pred eechHHHHHhhccC------eeEEEEeCCCCCCcccccHHHHHHHHH--------------------HHHHhCC------
Confidence 99999999999998 6777777777778866 77999999 9999999
Q ss_pred hhhhHHhhhcCC
Q psy11047 412 LAQKFEALVLGD 423 (943)
Q Consensus 412 lwLHVDAA~GG~ 423 (943)
.+..|--|+-.
T Consensus 234 -~vIaDEVY~~~ 244 (447)
T KOG0259|consen 234 -MVIADEVYGHT 244 (447)
T ss_pred -eEEehhhccee
Confidence 89999888765
No 359
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=96.85 E-value=0.016 Score=66.00 Aligned_cols=163 Identities=7% Similarity=-0.039 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhc-cCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCc--EEEcCChHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDAINC-LGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGG--GVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 206 silgd~L~~alN~-n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~--GvfTsGGTeANL~AL~aAR~~~ 282 (943)
..+.+.+..+... ....|.......++=..+.+|+.+.-+..-. ... .++|+|+++|...++.+-. .
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~--------~~~i~v~iT~Ga~~al~~~~~~l~--~ 116 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALA--------AGRVATVQTPGGTGALRVGADFLK--R 116 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccc--------cCeEEEEecCCccHHHHHHHHHHH--H
Confidence 3455555555432 2223443334445555555665443221101 112 4899999999877764311 0
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEec-C-CCCCcCHHHHHHHHHHhhccCCCcEEEEE
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIES-D-DKLSLRGDKLIEAIERDKKKHLIPFFIFS 360 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~-D-~~grmD~daLe~aI~~d~~kG~~P~~VVa 360 (943)
+ .|| -.|++.+-+......++.+.+.+++.+|. + +++.+|+++|++++..... ...+++.
T Consensus 117 ~------~pG---------d~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~---~~~~~i~ 178 (396)
T PRK09257 117 A------FPD---------AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA---GDVVLLH 178 (396)
T ss_pred h------CCC---------CeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC---CCEEEEe
Confidence 0 133 23666666665566666554458888887 2 4578999999998874211 1356666
Q ss_pred ecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 361 GLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 361 TaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+...+-||.+-+ +++|.+ +|++|++ |+..|-+|...
T Consensus 179 ~~p~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~De~Y~~l 217 (396)
T PRK09257 179 GCCHNPTGADLTPEQWDELAE--------------------LLKERGL-------IPFLDIAYQGF 217 (396)
T ss_pred CCCCCCCCCCCCHHHHHHHHH--------------------HHHhCCc-------EEEEecccccc
Confidence 677788888855 666777 9999999 99999999865
No 360
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=96.63 E-value=0.39 Score=56.13 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 642 ~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
...+.+++.++|.+. + . +.++...|++||+++++.+.++..++.+.
T Consensus 364 ~~~~~~~l~~~Gi~~--p-------~--l~is~~ht~~dId~~l~~l~~~l~~~~~~ 409 (431)
T PRK06209 364 RTLFLQETIRRGVLM--P-------S--LVVSYAHGDADIERTIDAVHGALGVYRKA 409 (431)
T ss_pred HHHHHHHHHHCCccc--c-------c--ccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888642 1 1 23446779999999999999998887443
No 361
>KOG0256|consensus
Probab=96.63 E-value=0.21 Score=57.65 Aligned_cols=120 Identities=11% Similarity=0.024 Sum_probs=86.2
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHH-HHCCccEEEEecC--CCCCc
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAG-LIGLVNMRYIESD--DKLSL 336 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa-~LG~~~v~~Vp~D--~~grm 336 (943)
..++|.|+|.||-+-+.+ +. .||. ..+++.--...+.+-+ +-.+.+++.|.++ +..++
T Consensus 148 ~~Vv~~G~T~ane~l~fc-----La-----dpgd---------afLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~i 208 (471)
T KOG0256|consen 148 RVVVTNGATSANETLMFC-----LA-----DPGD---------AFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQI 208 (471)
T ss_pred ceEEecccchhhHHHHHH-----hc-----CCCc---------eeeecCCCCCcccccceeccCceEEEEEeecCCCccc
Confidence 589999999998554443 11 2441 1233322222344434 3456688888765 46799
Q ss_pred CHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchh
Q psy11047 337 RGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLA 413 (943)
Q Consensus 337 D~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lw 413 (943)
++++||+++++..+.|..+.-|+.|-.++-.|.+-+ |..+.. .+.++++ .
T Consensus 209 tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~--------------------Fa~~kni-------H 261 (471)
T KOG0256|consen 209 TVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLN--------------------FASRKNI-------H 261 (471)
T ss_pred cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHH--------------------HHhhcce-------E
Confidence 999999999999999998999999999999998766 444445 7889999 9
Q ss_pred hhHHhhhcCCCcc
Q psy11047 414 QKFEALVLGDPRF 426 (943)
Q Consensus 414 LHVDAA~GG~~af 426 (943)
+.+|--|.+. .|
T Consensus 262 vI~DEIya~s-VF 273 (471)
T KOG0256|consen 262 VISDEIYAGS-VF 273 (471)
T ss_pred EEeehhhccc-cc
Confidence 9999999988 55
No 362
>PTZ00376 aspartate aminotransferase; Provisional
Probab=96.56 E-value=0.039 Score=63.26 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHHCCccEEEEecC--CCCCcCHHH
Q psy11047 263 LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD--DKLSLRGDK 340 (943)
Q Consensus 263 fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~LG~~~v~~Vp~D--~~grmD~da 340 (943)
.|.||++|...++.+.+.. + .|| -.|++.+-+......++.+.+.+++.+|.. +++.+|.+.
T Consensus 102 ~t~G~~~al~~~~~~l~~~-~------~~G---------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~ 165 (404)
T PTZ00376 102 QALSGTGALRLGFEFLKRF-L------PAG---------TTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDG 165 (404)
T ss_pred eccCcchHHHHHHHHHHHh-c------CCC---------CEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHH
Confidence 4999999987666543321 1 123 235566666666666776555588889883 458999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHH
Q psy11047 341 LIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFE 417 (943)
Q Consensus 341 Le~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVD 417 (943)
+++++..... ...+++.+-..+-||.+-+ +++|.+ +|++||+ |+..|
T Consensus 166 l~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~l~~--------------------~a~~~~~-------~ii~D 215 (404)
T PTZ00376 166 MLEDLRTAPN---GSVVLLHACAHNPTGVDPTEEQWKEIAD--------------------VMKRKNL-------IPFFD 215 (404)
T ss_pred HHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHHH--------------------HHHhCCc-------EEEEe
Confidence 9999875311 1356666677888888754 666777 8999999 99999
Q ss_pred hhhcCC
Q psy11047 418 ALVLGD 423 (943)
Q Consensus 418 AA~GG~ 423 (943)
-+|..+
T Consensus 216 e~Y~~~ 221 (404)
T PTZ00376 216 MAYQGF 221 (404)
T ss_pred hhhcCc
Confidence 999876
No 363
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=96.56 E-value=0.25 Score=56.42 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCeEEec---CCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPA---ARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~---~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ed 680 (943)
.+-|+.|++.+.+.+-+.-.. .+..--|||++.. .++...+++.+.++|.++... .+-.+-+|+++...+..++
T Consensus 273 ~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~-~~ld~~fv~eae~~gl~~lkG--hr~vgGmRasiynA~~~e~ 349 (365)
T COG1932 273 QAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVD-AELDKGFVAEAEAAGLIYLKG--HRSVGGLRASIYNAVPLED 349 (365)
T ss_pred HHHHHHHHHHHHhCCccccccchhhccceeEEEEcCc-HHHHHHHHHHHHHcCCceecc--ccCCCceeeeeecCCCHHH
Confidence 455777888888775443332 2334457899873 467889999999988776654 3333449999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTATE 694 (943)
Q Consensus 681 Id~ll~~I~~~~~~ 694 (943)
++.+++.|+...++
T Consensus 350 veaL~~fm~~f~~~ 363 (365)
T COG1932 350 VEALTDFMDWFEET 363 (365)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887553
No 364
>KOG0053|consensus
Probab=96.50 E-value=0.27 Score=57.11 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~ 305 (943)
.|....+|.. ++.+-|.+ ..+..++|..|...|+..- ++ +| ..++
T Consensus 76 nPt~~~le~~----iaal~ga~------------~~l~fsSGmaA~~~al~~L----~~------~g---------~~iV 120 (409)
T KOG0053|consen 76 NPTRDVLESG----IAALEGAA------------HALLFSSGMAAITVALLHL----LP------AG---------DHIV 120 (409)
T ss_pred CCchHHHHHH----HHHHhCCc------------eEEEecccHHHHHHHHHHh----cC------CC---------CcEE
Confidence 4666677764 46777764 3567777776766665531 11 11 2244
Q ss_pred ecCCC----chHHHHHH-HHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhhhc
Q psy11047 306 CSDQA----HSSVEKAG-LIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM 380 (943)
Q Consensus 306 ~S~~a----HySv~KAa-~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~~~ 380 (943)
++... |.-+.+-. .+|. ....+.++ |.+.++++++++ +.+|-.=..++-++.+-||++|++
T Consensus 121 ~~~~~Y~gT~~~l~~~~~~~gi-e~~~vd~~-----~~~~~~~~i~~~------t~~V~~ESPsNPll~v~DI~~l~~-- 186 (409)
T KOG0053|consen 121 ATGDVYGGTLRILRKFLPKFGG-EGDFVDVD-----DLKKILKAIKEN------TKAVFLESPSNPLLKVPDIEKLAR-- 186 (409)
T ss_pred EeCCCcccHHHHHHHHHHHhCc-eeeeechh-----hHHHHHHhhccC------ceEEEEECCCCCccccccHHHHHH--
Confidence 44322 22233333 3343 44444443 367777777764 567777788899999999999999
Q ss_pred cccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 381 IVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 381 ~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+-||..+|+.
T Consensus 187 ------------------la~~~g~-------~vvVDnTf~~p 204 (409)
T KOG0053|consen 187 ------------------LAHKYGF-------LVVVDNTFGSP 204 (409)
T ss_pred ------------------HHhhCCC-------EEEEeCCcCcc
Confidence 9999999 99999999887
No 365
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=96.45 E-value=0.053 Score=65.00 Aligned_cols=163 Identities=8% Similarity=-0.090 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhccCcccc-CChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHH-HHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWA-SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAG-RTEA 282 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~-~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aA-R~~~ 282 (943)
+.++-++....++. .|. ........|..+.+|+.+..+..... ......++|.|||+|..+++.+- .+.+
T Consensus 109 ~~~~~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~-----~~~~~V~it~Gat~al~~~~~~l~~~~l 180 (521)
T TIGR03801 109 DAFLYEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPP-----PGEFDLFAVEGGTAAMCYIFDSLKANEL 180 (521)
T ss_pred CHHHHHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCC-----CCcCeEEEeCCHHHHHHHHHHHHhHhhc
Confidence 35555665555543 343 23344567777767887765432110 00115889999999987776541 1111
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-C-CccEEEEecCC--C-----CCcCHHHHHHHHHHhhccCC
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-G-LVNMRYIESDD--K-----LSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G-~~~v~~Vp~D~--~-----grmD~daLe~aI~~d~~kG~ 353 (943)
+ .|| + .|++..-........+.+ | +..++.|+++. . +++|.++|+++++..
T Consensus 181 l------~pG--------D-~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~----- 240 (521)
T TIGR03801 181 L------KKG--------D-KIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPS----- 240 (521)
T ss_pred C------CCC--------C-EEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCC-----
Confidence 1 233 2 244444455445555543 3 34677777753 2 789999999876542
Q ss_pred CcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHc--CCCCCccchhhhHHhhhcCC
Q psy11047 354 IPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSY--FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~--Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+++.+-.++-||.+-+ +++|++ +|++| ++ |+-.|-+|+-+
T Consensus 241 -~kai~l~nP~NPTG~vls~e~l~~I~~--------------------ia~~~~~~l-------~II~DEvY~~f 287 (521)
T TIGR03801 241 -IKALFVVNPSNPPSVAMSDESIEKIVD--------------------IVANDRPDL-------MILTDDVYGTF 287 (521)
T ss_pred -CcEEEEeCCCCCCCCCCCHHHHHHHHH--------------------HHHhcCCCe-------EEEECCCchhh
Confidence 556666678899998866 666777 89887 78 99999999855
No 366
>KOG2467|consensus
Probab=96.37 E-value=0.46 Score=54.43 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=163.8
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEE--EcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceE
Q psy11047 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGV--LQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303 (943)
Q Consensus 226 SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~Gv--fTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~v 303 (943)
.-...++|.-+...-.++||++++ .||| =.-+||-||+..-. |- ++ |+-+ | .-
T Consensus 81 ne~ID~iE~LCq~RALeaF~ldp~---------kWGVNVQp~SGSPANfavYt-al---l~------Ph~R---i---MG 135 (477)
T KOG2467|consen 81 NEYIDQIELLCQKRALEAFGLDPE---------KWGVNVQPYSGSPANFAVYT-AL---LK------PHER---I---MG 135 (477)
T ss_pred chHHHHHHHHHHHHHHHHhCCCHH---------HCceeeccCCCCchhhHHHh-hh---cC------CCCe---e---ee
Confidence 345788999999999999999876 3553 34588999975533 21 11 2100 0 01
Q ss_pred EEecCCCchHHHHH--H-HHCCccE----EEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHH
Q psy11047 304 AYCSDQAHSSVEKA--G-LIGLVNM----RYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCC 375 (943)
Q Consensus 304 V~~S~~aHySv~KA--a-~LG~~~v----~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~e 375 (943)
+-.++-.|-|---. . .+....+ ..-.+| ..|-+|.+.|++.-..- .|.++++ |+....-.-++..
T Consensus 136 LDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~f-----rPk~iia--G~SaY~R~~DYaR 208 (477)
T KOG2467|consen 136 LDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLF-----RPKLIIA--GTSAYSRLIDYAR 208 (477)
T ss_pred ccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhc-----CCcEEEe--ccccchhhccHHH
Confidence 12344455432110 0 1111111 111233 68999999999865543 3666664 4444333333444
Q ss_pred hhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHHh
Q psy11047 376 LGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRL 455 (943)
Q Consensus 376 Ia~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~l 455 (943)
+. .+|.+-|. ++-+|-|+=.. . ++.
T Consensus 209 ~R--------------------~Iad~~gA-------~Lm~DMAHISg-L---VAA------------------------ 233 (477)
T KOG2467|consen 209 FR--------------------KIADKVGA-------YLMADMAHISG-L---VAA------------------------ 233 (477)
T ss_pred HH--------------------HHHHhcCc-------eeehhhhhHHH-H---Hhc------------------------
Confidence 44 49999999 88888885333 1 000
Q ss_pred hccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchh--hhhc-ccC------ccccccCCCCcccccC-ccccCCC
Q psy11047 456 NSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGAL--HRTF-NVE------PLYLRHENSGLAIDYM-HWQIPLS 525 (943)
Q Consensus 456 ~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L--~~af-~~~------p~YL~~~~~g~~~d~~-~~tie~S 525 (943)
|. .-.+ .++||-+|...||.|.=+....+ +.-. ..+ ..|=. ...+++. -.+++|+
T Consensus 234 ---~v-ipsP-------Fey~DiVTTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~~i~ydl----E~kINfaVFP~lQGG 298 (477)
T KOG2467|consen 234 ---GV-IPSP-------FEYCDIVTTTTHKSLRGPRGAMIFYRKGVKSIKPKQGKEILYDL----EDKINFAVFPGLQGG 298 (477)
T ss_pred ---cc-CCCc-------ccccceeeccccccccCCcceeEEEeccCCcCCCCCCCcceech----hhhhhhhccccccCC
Confidence 00 1122 37899999999999982111111 0000 000 01100 0011221 2245555
Q ss_pred CCcch-HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHH
Q psy11047 526 KRFRA-LKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 604 (943)
Q Consensus 526 RrfrA-LklW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~ 604 (943)
=.--. ..+-.+|+......|.++.+++ +
T Consensus 299 PHNhtIaalAvALkQa~tpefk~Yq~qV---------------------------------------------------~ 327 (477)
T KOG2467|consen 299 PHNHTIAALAVALKQAMTPEFKEYQKQV---------------------------------------------------L 327 (477)
T ss_pred CCcchHHHHHHHHHhhCCHHHHHHHHHH---------------------------------------------------H
Confidence 33222 2233355655555666665553 3
Q ss_pred HHHHHHHHHHhCCCCeEEec---CCCccEEEEEecCCC-hHHHHHHHHHh----ccCcEEEeecccCCCcEEEE----ee
Q psy11047 605 RLAQKFEALVLGDPRFEIPA---ARHLGMVVIRLLGEN-ILTEKLLKRLN----SKGRLHCVPASLRIQGLGRA----QN 672 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~---~~~l~iV~Fr~~g~n-~l~~~Ll~~L~----~~G~~~~s~t~~~g~~~lR~----v~ 672 (943)
..|+.|++.|.+. +++++. +.++=+|-.|.+|.+ ...+.+++.++ +.- ...-.+.-.++-+|+ .+
T Consensus 328 ~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNt--vpGD~Sal~PgGiRiGtPAmT 404 (477)
T KOG2467|consen 328 KNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNT--VPGDKSALSPGGIRIGTPAMT 404 (477)
T ss_pred HHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCc--CCCCccccCCCceeccchhhc
Confidence 4566666666554 788875 345555555656654 34567776543 211 111111112456888 23
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy11047 673 FTRTTNDDITRDWNEIRNTATE 694 (943)
Q Consensus 673 ~~~tt~edId~ll~~I~~~~~~ 694 (943)
+.-..++|.++..+.|.+.++-
T Consensus 405 sRG~~e~df~~v~~fi~~av~i 426 (477)
T KOG2467|consen 405 SRGFGEEDFEKVADFIDRAVKI 426 (477)
T ss_pred ccCccHHHHHHHHHHHHHHHHH
Confidence 4555689999998888877553
No 367
>KOG0634|consensus
Probab=96.27 E-value=0.78 Score=53.55 Aligned_cols=115 Identities=9% Similarity=-0.077 Sum_probs=76.2
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEecCCCCCcC
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIESDDKLSLR 337 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~D~~grmD 337 (943)
++.++|+|.|.+...++...-++ .-+|++-+.+-.+-..++. +| +.++.|+.|++| |+
T Consensus 125 wdiiit~G~t~~l~~~l~~~~N~-------------------gd~vlie~~ty~~AL~s~~a~g-v~~ipv~md~~G-i~ 183 (472)
T KOG0634|consen 125 WDIIITNGNTDGLFKVLRTLINR-------------------GDHVLIEEYTYPSALQSMEALG-VKIIPVKMDQDG-ID 183 (472)
T ss_pred ceEEEecCCchHHHHHHHHhhcC-------------------CCceEEecccchHHHHhccccC-ceEEeccccCCC-CC
Confidence 67899999999998887765321 1246665555555555553 66 577777776665 78
Q ss_pred HHHHHHHHHHhhcc--CCCcEEEEEec--CCCcccccccHH---HhhhhccccccccccccccCchHHHHHHcCCCCCcc
Q psy11047 338 GDKLIEAIERDKKK--HLIPFFIFSGL--ALPAFLVVDSYC---CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSV 410 (943)
Q Consensus 338 ~daLe~aI~~d~~k--G~~P~~VVaTa--GTT~tGaIDpL~---eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l 410 (943)
++.|++.+..-... |..-.-|..|. |.+-||.--+++ +|.+ +||+|++
T Consensus 184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~--------------------LArKyDf----- 238 (472)
T KOG0634|consen 184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQ--------------------LARKYDF----- 238 (472)
T ss_pred HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHH--------------------HHHHcCE-----
Confidence 99999988753221 21112344443 777788766654 5566 9999998
Q ss_pred chhhhHHhhhc
Q psy11047 411 RLAQKFEALVL 421 (943)
Q Consensus 411 ~lwLHVDAA~G 421 (943)
.+--|--|.
T Consensus 239 --LIVeDdpYy 247 (472)
T KOG0634|consen 239 --LIVEDDPYY 247 (472)
T ss_pred --EEEecCccc
Confidence 777777764
No 368
>KOG1360|consensus
Probab=96.24 E-value=0.41 Score=55.22 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEe----ecccCCCcEEEEeecCCCCHH
Q psy11047 604 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV----PASLRIQGLGRAQNFTRTTND 679 (943)
Q Consensus 604 ~~LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s----~t~~~g~~~lR~v~~~~tt~e 679 (943)
.+..+++...|.+. ++-++..| ..||=.++. ...++.++.+.|..+..+|+. ||.-+|.--||+...|+.|++
T Consensus 433 qrnv~~~kq~l~~~-GiPVi~~p-SHIiPv~vg-da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~ 509 (570)
T KOG1360|consen 433 QRNVKYVKQLLMEL-GIPVIPNP-SHIIPVRVG-DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQ 509 (570)
T ss_pred HHHHHHHHHHHHHc-CCcccCCC-cceeeeecc-CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHH
Confidence 34445555555443 55555322 446666664 345688888887777777875 566778888999888888999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11047 680 DITRDWNEIRNTATE 694 (943)
Q Consensus 680 dId~ll~~I~~~~~~ 694 (943)
-++.+++.+..+-.+
T Consensus 510 mm~~lv~~l~~vw~~ 524 (570)
T KOG1360|consen 510 MMNILVNALLDVWNE 524 (570)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887766544
No 369
>KOG0257|consensus
Probab=96.22 E-value=0.099 Score=60.39 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHhcc-CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHH
Q psy11047 204 YPSLLGDMLSDAINCL-GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEA 282 (943)
Q Consensus 204 ~~silgd~L~~alN~n-~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~ 282 (943)
+|..+.+.+..+..-. ...|.-.-....|-..+...+++++|-... ......+|.|+.+|.+.++++--
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~-------~~~eVlVT~GA~~ai~~~~~~l~--- 114 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLD-------PDDEVLVTAGANEAISSALLGLL--- 114 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccC-------CcccEEEecCchHHHHHHHHHHc---
Confidence 4556665555443221 112222223455666677777776654321 12368999999999988887531
Q ss_pred HHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH-HCCccEEEEec--------CCCCCcCHHHHHHHHHHhhccCC
Q psy11047 283 IRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--------DDKLSLRGDKLIEAIERDKKKHL 353 (943)
Q Consensus 283 l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--------D~~grmD~daLe~aI~~d~~kG~ 353 (943)
.+| +-||+. +-.-.|-.-... .|+ ..+.|+. ..++.+|.+.|+.++.+.
T Consensus 115 -------~~G--------DeVii~-eP~fd~Y~~~~~maG~-tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k----- 172 (420)
T KOG0257|consen 115 -------NPG--------DEVIVF-EPFFDCYIPQVVMAGG-TPVFVPLKPKEGNVSSSDWTLDPEELESKITEK----- 172 (420)
T ss_pred -------CCC--------CEEEEe-cCcchhhhhHHhhcCC-cceeeccccccccccCccccCChHHHHhhccCC-----
Confidence 233 223332 333333333333 454 3333332 368999999999999986
Q ss_pred CcEEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 354 IPFFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 354 ~P~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+.+|+.+-..+-+|.+-+ |++|++ +|++||+ |+..|-+|...
T Consensus 173 -Tk~Ii~ntPhNPtGkvfsReeLe~ia~--------------------l~~k~~~-------lvisDevYe~~ 217 (420)
T KOG0257|consen 173 -TKAIILNTPHNPTGKVFSREELERIAE--------------------LCKKHGL-------LVISDEVYEWL 217 (420)
T ss_pred -ccEEEEeCCCCCcCcccCHHHHHHHHH--------------------HHHHCCE-------EEEEhhHhHHH
Confidence 778999999999999977 889999 9999999 99999999765
No 370
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=95.94 E-value=0.96 Score=53.45 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~ 698 (943)
...++.+...++|. ++-|. |. .+=+..-.-.|+++|+++++.+++..++..++
T Consensus 395 ~~~~~~~~~~e~Gl-~iRp~---g~-~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 395 VGARVRAAALERGL-LIRPL---GD-VIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred HHHHHHHHHHHCCe-EEeec---CC-EEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777888885 44432 22 33334444579999999999999998877654
No 371
>PRK09275 aspartate aminotransferase; Provisional
Probab=95.93 E-value=0.12 Score=62.25 Aligned_cols=164 Identities=5% Similarity=-0.104 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhccCccccCChhHHHHHHHHHH-HHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHH
Q psy11047 205 PSLLGDMLSDAINCLGFTWASSPACTELEIITMN-WLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAI 283 (943)
Q Consensus 205 ~silgd~L~~alN~n~~~~~~SPaateLE~~Vi~-wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l 283 (943)
|..+-++...... ..|...+..-++=+.+.+ ++.+-.+..... ......++|.|||+|...++.+-....+
T Consensus 115 ~~~v~e~~~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~-----~~~~~I~vT~Ga~~al~~~~~aL~~~~l 186 (527)
T PRK09275 115 DEFVYELVDGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPP-----KGEFDLFAVEGGTAAMCYIFDSLKENGL 186 (527)
T ss_pred CHHHHHHHHHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCC-----CCcCeEEEeCCHHHHHHHHHHHHhhhhc
Confidence 4555565544432 235555555444444444 555543321110 0012588999999998877664211111
Q ss_pred HhhcccCCCchhhhcCCceEEEecCCCchHHHHHHHH-C-CccEEEEecC--CCCCcCHHHHHHHHHHhhccCCCcEEEE
Q psy11047 284 RKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLI-G-LVNMRYIESD--DKLSLRGDKLIEAIERDKKKHLIPFFIF 359 (943)
Q Consensus 284 ~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~L-G-~~~v~~Vp~D--~~grmD~daLe~aI~~d~~kG~~P~~VV 359 (943)
-.|| + .|++.+-........+.+ | ...++.++.+ +.+++|.++|+++++.. +.+++
T Consensus 187 -----l~pG--------D-~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~------tkai~ 246 (527)
T PRK09275 187 -----LKAG--------D-KIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPS------IKALF 246 (527)
T ss_pred -----CCCC--------C-EEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCC------CCEEE
Confidence 0233 2 244444454445555544 3 3355666654 35789999999876543 55677
Q ss_pred EecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHH--cCCCCCccchhhhHHhhhcCC
Q psy11047 360 SGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILS--YFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 360 aTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~--~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+-.++-+|.+-+ +++|++ +|++ +++ |+-.|-+|+-+
T Consensus 247 l~nP~NPTG~v~s~e~l~~I~~--------------------ia~~~~~~l-------~II~DEvY~~f 288 (527)
T PRK09275 247 LVNPSNPPSVAMSDESLEKIAD--------------------IVNEKRPDL-------MIITDDVYGTF 288 (527)
T ss_pred EeCCcCCcCCCCCHHHHHHHHH--------------------HHHhcCCCc-------EEEECCCChhh
Confidence 7778899999866 666777 8865 488 99999999865
No 372
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=95.52 E-value=2.1 Score=48.27 Aligned_cols=160 Identities=11% Similarity=-0.085 Sum_probs=87.1
Q ss_pred HHHHHHHHHH-HhccCccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHH
Q psy11047 206 SLLGDMLSDA-INCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284 (943)
Q Consensus 206 silgd~L~~a-lN~n~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~ 284 (943)
...++|+++. +-.+...|+.+-.-+.+-..+..++.+-+||.-.. ....+|.|+.-+-++..-. +.
T Consensus 52 ~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~--------~NIalTnGSQs~fFYlfNl-----F~ 118 (417)
T COG3977 52 DLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA--------QNIALTNGSQSAFFYLFNL-----FA 118 (417)
T ss_pred HHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--------ceeeecCCccchHHHHHHH-----hc
Confidence 3556666654 33344556655455556667778888888997431 2467788777666554321 11
Q ss_pred hhcccCCCchhhhcCCceEEEecCCCchHH-HHHHHHCCccEE----EEecCC----CCCcCHHHHHHHHHHhhccCCCc
Q psy11047 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSV-EKAGLIGLVNMR----YIESDD----KLSLRGDKLIEAIERDKKKHLIP 355 (943)
Q Consensus 285 ~~~~~~pGl~~~~i~~~~vV~~S~~aHySv-~KAa~LG~~~v~----~Vp~D~----~grmD~daLe~aI~~d~~kG~~P 355 (943)
... ..| . .+ .|+.+-.-.|-= ..++.- ...++ .|+.++ ..++|-++|.- .+ .+
T Consensus 119 G~~--sdG-----~-~k-~illPLaPeYiGY~d~~l~-~d~fVs~kP~iel~~~g~FKY~vDF~~l~i--~e------~~ 180 (417)
T COG3977 119 GRR--SDG-----T-EK-KILLPLAPEYIGYADAGLE-EDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GE------ST 180 (417)
T ss_pred Ccc--CCC-----c-ce-eEeeccChhhccccccccC-ccceeeccCCcccccccceeeccCHHHccc--cc------cc
Confidence 110 011 0 01 122221111110 011110 01111 112222 34677777652 22 26
Q ss_pred EEEEEecCCCccccccc---HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 356 FFIFSGLALPAFLVVDS---YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 356 ~~VVaTaGTT~tGaIDp---L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
-+||++-.|+-||.|-- +..+.+ +|++||+ .+.+|-|||-.
T Consensus 181 g~ic~SRPtNPTGNVlTdeE~~klda--------------------lA~~~gi-------PliIDnAYg~P 224 (417)
T COG3977 181 GAICVSRPTNPTGNVLTDEELAKLDA--------------------LARQHGI-------PLIIDNAYGVP 224 (417)
T ss_pred ceEEecCCCCCCCCcccHHHHHHHHH--------------------HhhhcCC-------cEEEecccCCC
Confidence 68999999999998844 445555 9999999 99999999864
No 373
>PLN02880 tyrosine decarboxylase
Probab=95.22 E-value=0.013 Score=69.57 Aligned_cols=84 Identities=30% Similarity=0.452 Sum_probs=63.1
Q ss_pred ccccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecc-------
Q psy11047 382 VKGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------- 443 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~------- 443 (943)
..|+.+|+++++|||| +..+.+|.++ +++++.-++-......+.|+++.++.+++||||+..
T Consensus 347 ~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~ 426 (490)
T PLN02880 347 VVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDN 426 (490)
T ss_pred CCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhh
Confidence 4688999999999999 2356778765 334444444344444456899999999999999863
Q ss_pred hhhhHHHHHHHhhccCcccccc
Q psy11047 444 ENILTEKLLKRLNSKGRLHCVP 465 (943)
Q Consensus 444 ~ne~n~kll~~l~~~G~~~~p~ 465 (943)
.|++|++++++++++|++++..
T Consensus 427 ~~~~n~~l~~~l~~~g~~~v~~ 448 (490)
T PLN02880 427 GNKLNHDLLDAVNSSGKIFISH 448 (490)
T ss_pred HHHHHHHHHHHHHhCCCEEEEE
Confidence 2788999999999999887654
No 374
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.26 Score=56.24 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=55.4
Q ss_pred cCCCchHHHHHHH--HCCccEEEE----------ecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccc---ccc
Q psy11047 307 SDQAHSSVEKAGL--IGLVNMRYI----------ESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFL---VVD 371 (943)
Q Consensus 307 S~~aHySv~KAa~--LG~~~v~~V----------p~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tG---aID 371 (943)
....|+-.-++-. .|. -.+-+ ..+-.|-+|++.|++.|++-.... .|.++...-.++..| +++
T Consensus 129 ~sN~~FdTTr~h~~~ng~-~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~n-vp~I~~tiT~NsagGQpVSm~ 206 (471)
T COG3033 129 FSNYHFDTTRGHIQINGA-TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADN-VPYIVLTITNNSAGGQPVSMA 206 (471)
T ss_pred cccceecchhHHHHhcCC-ccccccccccccccccCCCCCccCHHHHHHHHHHhCccc-CcEEEEEEeccccCCCcchHH
Confidence 3457776666652 233 22222 223478899999999999865443 344433333333334 567
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhh
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~ 420 (943)
+++++.+ +|++|++ .+-+|+|-
T Consensus 207 n~r~v~~--------------------ia~ky~i-------pvv~Da~R 228 (471)
T COG3033 207 NMKAVYE--------------------IAKKYDI-------PVVMDAAR 228 (471)
T ss_pred hHHHHHH--------------------HHHHcCC-------cEEeehhh
Confidence 7888888 9999999 99999994
No 375
>KOG0258|consensus
Probab=94.94 E-value=0.23 Score=57.11 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=97.3
Q ss_pred CccccCChhHHHHHHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHH--HHHHHHHHHHhhcccCCCchhhh
Q psy11047 220 GFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLIC--LLAGRTEAIRKYQQSHPELEHAE 297 (943)
Q Consensus 220 ~~~~~~SPaateLE~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~A--L~aAR~~~l~~~~~~~pGl~~~~ 297 (943)
.+.|..|-....+-+.|.+.+-+-=|.|.. ..+.++|+|+|.|...- |+.+.. ..|
T Consensus 106 ~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~--------p~dI~LT~GAS~ai~~il~l~~~~~---------~~G----- 163 (475)
T KOG0258|consen 106 LGAYSDSQGVPGVRKHVAEFIERRDGIPAD--------PEDIFLTTGASPAIRSILSLLIAGK---------KTG----- 163 (475)
T ss_pred ccccccccCChhHHHHHHHHHHhccCCCCC--------HHHeeecCCCcHHHHHHHHHHhcCC---------CCc-----
Confidence 345555655555555565555555576544 25789999999995443 333220 112
Q ss_pred cCCceEEEecCCCchHHHHHH--HHCCccE-EEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccc---
Q psy11047 298 INSRLVAYCSDQAHSSVEKAG--LIGLVNM-RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVD--- 371 (943)
Q Consensus 298 i~~~~vV~~S~~aHySv~KAa--~LG~~~v-~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaID--- 371 (943)
..|-+++ |-..-|- .+|+..| .++.-..+|.+|.++|++++++.. +|..|.++|..-..+.||.+-
T Consensus 164 ----vliPiPQ---YPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e 235 (475)
T KOG0258|consen 164 ----VLIPIPQ---YPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEE 235 (475)
T ss_pred ----eEeecCC---CchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHH
Confidence 1222333 3333443 3565444 455666799999999999999887 888888877777778888874
Q ss_pred cHHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 372 SYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 372 pL~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
.+++|.. +|.++|+ .+-.|-.|--.
T Consensus 236 ~ie~i~~--------------------fa~~~~l-------~llaDEVYQ~N 260 (475)
T KOG0258|consen 236 NIEGIIC--------------------FAAEEGL-------VLLADEVYQDN 260 (475)
T ss_pred HHHHHHH--------------------HHHHcCe-------EEechHHHHhh
Confidence 4777777 8999999 88888887543
No 376
>KOG3843|consensus
Probab=94.63 E-value=0.78 Score=50.58 Aligned_cols=292 Identities=14% Similarity=0.148 Sum_probs=153.5
Q ss_pred ceEEEecCCCchHHHHHHH-HCCccEEEEec--CCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccc---cccHH
Q psy11047 301 RLVAYCSDQAHSSVEKAGL-IGLVNMRYIES--DDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLV---VDSYC 374 (943)
Q Consensus 301 ~~vV~~S~~aHySv~KAa~-LG~~~v~~Vp~--D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGa---IDpL~ 374 (943)
+.+|.. ....-|-.|... -|...++.=++ .+..+-|+++.+..|++.. +-++.+.+-||.+-+ -|.++
T Consensus 104 kyiiw~-ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g-----~dcilci~sttscfapr~pd~le 177 (432)
T KOG3843|consen 104 KYIIWL-RIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELG-----EDCILCIHSTTSCFAPRSPDNLE 177 (432)
T ss_pred cEEEEE-ecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhC-----CceEEEEeecccccCCCCCchHH
Confidence 344443 334444455553 45543333333 2344668888888887753 445555566666543 48899
Q ss_pred HhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCCCccccccccccceeeeeecchhhhHHHHHHH
Q psy11047 375 CLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR 454 (943)
Q Consensus 375 eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~~ne~n~kll~~ 454 (943)
+|+. +|..|++ .-.|.-|||-- +++-.-.
T Consensus 178 aiaa--------------------ica~~di-------phivnnayglq------------------------see~i~~ 206 (432)
T KOG3843|consen 178 AIAA--------------------ICAAHDI-------PHIVNNAYGLQ------------------------SEECIHK 206 (432)
T ss_pred HHHH--------------------HHHccCc-------hhhhccccccc------------------------hHHHHHH
Confidence 9999 9999999 78888899754 1111100
Q ss_pred hhccCcccccchhhhhcCCCCeeEEEEcCCCccCccCcchhhhhcccCccccccCCCCcccccCccccCCCCC--cchHH
Q psy11047 455 LNSKGRLHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKR--FRALK 532 (943)
Q Consensus 455 l~~~G~~~~p~~r~~l~Gie~ADSItiDpHK~L~vr~~~~L~~af~~~p~YL~~~~~g~~~d~~~~tie~SRr--frALk 532 (943)
+. .-..+.++|.+.-+.-|-+.++-+..+..+|+.+ ++..- . ...+ +|. .-++-
T Consensus 207 ia------------a~~~~grida~vqsldknf~vpvggaiia~fk~n--~iq~i------a---k~yp-grasa~ps~d 262 (432)
T KOG3843|consen 207 IA------------AAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDN--FIQEI------A---KMYP-GRASASPSLD 262 (432)
T ss_pred HH------------HHhhhccHHHHHHHhhhcceeecchhHhhHhHHH--HHHHH------H---HhCC-CccccCccHH
Confidence 00 0112345676666777877777776665555432 22210 0 0001 121 12466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhhhcccccccccccCCCcccccccCCcHHHHHHHHHHHH
Q psy11047 533 LWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEA 612 (943)
Q Consensus 533 lW~tLr~~G~~Gl~~~I~~~l~~~~~~~~l~~~~~~~~g~~~i~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~LA~~l~~ 612 (943)
+..++-++|..+|.+...+--+ +|.|+.. +.+.+|+..-+
T Consensus 263 llitll~~gqn~f~e~~~eqke---------------------------------------mf~~l~~-ki~~~ae~~~e 302 (432)
T KOG3843|consen 263 LLITLLSLGQNAFKELFGEQKE---------------------------------------MFLKLRN-KIIKFAEAIGE 302 (432)
T ss_pred HHHHHHHhchhHHHHHHHHHHH---------------------------------------HHHHHHH-HHHHHHHHhhh
Confidence 7789999999999988877211 0111110 01333444433
Q ss_pred HHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHH-HhccCc---EEEe----ecccCC--------------CcEEEE
Q psy11047 613 LVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR-LNSKGR---LHCV----PASLRI--------------QGLGRA 670 (943)
Q Consensus 613 ~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~-L~~~G~---~~~s----~t~~~g--------------~~~lR~ 670 (943)
.|.+.|.=+| .+.|..=.++...+-...++.. |-.+|. -.+. .+...| -+++-+
T Consensus 303 ~l~~~p~n~i----s~amtl~ti~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~ 378 (432)
T KOG3843|consen 303 CLLETPENEI----SLAMTLKTIDEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNA 378 (432)
T ss_pred hhhcCCCchh----hhhhhhccCChHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhH
Confidence 3333333222 1111111121111111233322 223321 1111 011111 124444
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccc
Q psy11047 671 QNFTRTTNDDITRDWNEIRNTATEILAELAEETQRVQVTKRTRVPLKE 718 (943)
Q Consensus 671 v~~~~tt~edId~ll~~I~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 718 (943)
.+..-.+..|++.++..+.+....+.+++++++.++-...+ ++|..|
T Consensus 379 a~aigm~~hdld~~~~rl~~~~a~~~ke~akedd~~~~~~~-~i~i~e 425 (432)
T KOG3843|consen 379 ACAIGMKDHDLDEFFNRLDRCLAAFRKELAKEDDDINDKGE-DIDIEE 425 (432)
T ss_pred HHhcCCcHhHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cCCHHH
Confidence 55666788999999999999999999999988887754433 355544
No 377
>PLN02397 aspartate transaminase
Probab=94.26 E-value=1.1 Score=51.99 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=66.5
Q ss_pred EEEecCCCchHHHHHHHHCCccEEEEec-C-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---HHHhh
Q psy11047 303 VAYCSDQAHSSVEKAGLIGLVNMRYIES-D-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS---YCCLG 377 (943)
Q Consensus 303 vV~~S~~aHySv~KAa~LG~~~v~~Vp~-D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp---L~eIa 377 (943)
.|++.+-++......+.+-+.+++.+|. + +++.+|++.+++.+.... ..+.+++.+...+-||.+-+ +++|.
T Consensus 144 ~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~P~NPTG~v~s~e~l~~i~ 220 (423)
T PLN02397 144 TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAP---DGSFVLLHACAHNPTGVDPTPEQWEQIS 220 (423)
T ss_pred EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 3666666666666666554457788876 2 357899999998886431 12567777778889998855 56667
Q ss_pred hhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 378 TAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 378 ~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+ +|++||+ |+..|-+|...
T Consensus 221 ~--------------------~a~~~~~-------~vI~De~Y~~l 239 (423)
T PLN02397 221 D--------------------LIKSKNH-------LPFFDSAYQGF 239 (423)
T ss_pred H--------------------HHHhCCc-------EEEEecccCCc
Confidence 7 8999999 99999999876
No 378
>KOG1404|consensus
Probab=93.38 E-value=2.8 Score=48.66 Aligned_cols=47 Identities=11% Similarity=-0.063 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHH
Q psy11047 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEI 688 (943)
Q Consensus 640 ~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I 688 (943)
.....+-+.+.+.|. .|..-.+.|. ++|+..-...|.+||+.+++..
T Consensus 386 ~~~~~i~~~cke~Gv-lvg~g~i~G~-vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 386 AEGAVIGEQCKELGV-LVGKGGIHGN-VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHHHhCe-eeecccccce-EEEecCCeeccHHHHHHHHHHH
Confidence 345566677778785 3444445565 8999888889999997776654
No 379
>KOG3846|consensus
Probab=93.03 E-value=7.1 Score=44.26 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHH
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSV 314 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv 314 (943)
-++.-++.++|..+. -+-...+--+|+-.|+..-.+ ....+++=+ -.-..|- ..||++
T Consensus 115 ~il~l~~~iVGA~e~-----------EvavmNsLTvNlh~Ll~sFyK---PTekR~KIL------lE~kaFP--SDhYAi 172 (465)
T KOG3846|consen 115 PILPLLAPIVGAQEN-----------EVAVMNSLTVNLHSLLISFYK---PTEKRFKIL------LEKKAFP--SDHYAI 172 (465)
T ss_pred hhhhhhhhhccCCch-----------hhhhHhhhhhHHHHHHHHhcC---Ccchhhhhh------hccCCCC--chHHHH
Confidence 466677888888654 233445555677776654211 100011101 0011333 369999
Q ss_pred HHHHHH-CC---ccEEEEecC-CCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 315 EKAGLI-GL---VNMRYIESD-DKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 315 ~KAa~L-G~---~~v~~Vp~D-~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
+.-+.| |. ..++.|.+. ....++.+++-+.|+.+ |....+|+.+---..||-.-++..|..
T Consensus 173 esQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fdi~aIT~ 238 (465)
T KOG3846|consen 173 ESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFDIGAITF 238 (465)
T ss_pred HhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhc---CCeEEEEEeecceeecccccchhhhhh
Confidence 998876 43 246777654 46688999999999876 444666666666677898888888887
No 380
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=91.10 E-value=0.17 Score=60.76 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=61.7
Q ss_pred ccccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeecc-------
Q psy11047 382 VKGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG------- 443 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~~------- 443 (943)
..|+++|+++.+|+++ ...+.+|.+| +.+++.-++-.-....+.|+|..++.+++||||+..
T Consensus 367 ~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l 446 (522)
T TIGR03799 367 SKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQAL 446 (522)
T ss_pred CCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccc
Confidence 4678899999999999 2334455544 334445555444545557899999999999999741
Q ss_pred --------------hhhhHHHHHHHhhccCcccccch
Q psy11047 444 --------------ENILTEKLLKRLNSKGRLHCVPA 466 (943)
Q Consensus 444 --------------~ne~n~kll~~l~~~G~~~~p~~ 466 (943)
.|++|+++.++++++|++++..+
T Consensus 447 ~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t 483 (522)
T TIGR03799 447 AKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRT 483 (522)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 26778899999999999977654
No 381
>KOG1401|consensus
Probab=90.84 E-value=30 Score=40.79 Aligned_cols=119 Identities=17% Similarity=0.050 Sum_probs=68.3
Q ss_pred cEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH------HCC--c----cEEE
Q psy11047 260 GGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL------IGL--V----NMRY 327 (943)
Q Consensus 260 ~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~------LG~--~----~v~~ 327 (943)
...|+.+|||||..||..||.....+ ++. ..-+ +|..-..-|=-..-|+. .+. + .+..
T Consensus 118 rvff~nsGTeAne~ALK~Ark~~~~~----~~~-----~~t~-~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~ 187 (433)
T KOG1401|consen 118 RVFFCNSGTEANETALKFARKFTGKK----HPE-----KKTK-FIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVT 187 (433)
T ss_pred EEEEecCCcHHHHHHHHHHHHhhccc----CCc-----ccee-EEEEecCcCCcchhHHHhhcccccCCCCCCCCCceee
Confidence 57899999999999999999754321 111 0012 33333444422222221 121 1 2333
Q ss_pred EecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccc--cc--HHHhhhhccccccccccccccCchHHHHHHc
Q psy11047 328 IESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVV--DS--YCCLGTAMIVKGLGFYKMKLQTNFPNFILSY 403 (943)
Q Consensus 328 Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaI--Dp--L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~ 403 (943)
.+.+ |..+|++.++.. +|. ...|+.--+.-.-|.+ || +..+.. .|+++
T Consensus 188 ~~yn-----d~t~l~k~~~~h--~~~-IaAVIvEPiqGaGG~~p~~peFl~~L~k--------------------~C~~~ 239 (433)
T KOG1401|consen 188 AEYN-----DSTALEKLFESH--KGE-IAAVIVEPIQGAGGIIPADPEFLIGLRK--------------------ECDDN 239 (433)
T ss_pred cccC-----CHHHHHHHHHhC--CCc-eEEEEEecccCCCCcccCCHHHHHHHHH--------------------HHhhc
Confidence 3332 488999988864 332 3344444444333333 55 555555 99999
Q ss_pred CCCCCccchhhhHHhhhcCC
Q psy11047 404 FPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 404 Gl~~~~l~lwLHVDAA~GG~ 423 (943)
|+ .+..|--+-|+
T Consensus 240 ~v-------l~I~DEV~tG~ 252 (433)
T KOG1401|consen 240 GV-------LLIFDEVQTGL 252 (433)
T ss_pred Cc-------eEEeehhhhCc
Confidence 99 89999888775
No 382
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=90.41 E-value=3.1 Score=48.43 Aligned_cols=79 Identities=6% Similarity=-0.222 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCC--CcccccccHHHhhhhccccccc
Q psy11047 309 QAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLAL--PAFLVVDSYCCLGTAMIVKGLG 386 (943)
Q Consensus 309 ~aHySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGT--T~tGaIDpL~eIa~~~~~~d~~ 386 (943)
-.|+++...+.+++..++.+ ...++-...+++.+|.++. .++.-++.. ..+|. -+++++.+
T Consensus 119 gg~~~v~d~~~~aG~~l~Ev--G~tn~t~~~d~~~AIne~t------a~llkV~s~~~~f~~~-l~~~~l~~-------- 181 (395)
T COG1921 119 GGAFRVPDIIRLAGAKLVEV--GTTNRTHLKDYELAINENT------ALLLKVHSSNYGFTGM-LSEEELVE-------- 181 (395)
T ss_pred CCCCChhHHHHHcCCEEEEe--cccCcCCHHHHHHHhccCC------eeEEEEeecccccccc-ccHHHHHH--------
Confidence 58999999998877665555 4567788999999999874 344444433 23333 34777888
Q ss_pred cccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 387 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 387 ~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
+|+++|+ .+.+|+|-|.-
T Consensus 182 ------------ia~~~~l-------pvivD~aSg~~ 199 (395)
T COG1921 182 ------------IAHEKGL-------PVIVDLASGAL 199 (395)
T ss_pred ------------HHHHcCC-------CEEEecCCccc
Confidence 9999999 99999998753
No 383
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=90.17 E-value=67 Score=41.28 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHHh-ccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLN-SKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 642 ~~~Ll~~L~-~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
...+.+++. ++|. ++.+. + .++|+.+.+.+++++++++++.|.+.
T Consensus 770 a~~v~~~~~~~~Gl-~~r~~---G-nvi~l~pP~~i~~e~l~~~~~~l~~~ 815 (817)
T PLN02974 770 ARSVVRRLRREDGI-YARPL---G-NVVYLMCGPTTSPETCTRLLRKVYRR 815 (817)
T ss_pred HHHHHHHHHHhCCE-EEEec---C-CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456777777 7775 44432 3 58999999999999999999988764
No 384
>KOG1358|consensus
Probab=90.11 E-value=12 Score=43.82 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=60.2
Q ss_pred HHHHHHHhCCCCeEEecCCCccEEEEEecCCC---h----HHHHHHHHHhccCcEEEeeccc------CCCcEEEEeecC
Q psy11047 608 QKFEALVLGDPRFEIPAARHLGMVVIRLLGEN---I----LTEKLLKRLNSKGRLHCVPASL------RIQGLGRAQNFT 674 (943)
Q Consensus 608 ~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n---~----l~~~Ll~~L~~~G~~~~s~t~~------~g~~~lR~v~~~ 674 (943)
..+.+.++...++++-..+...++-.++.+.. + +-+++.++...+|.+......+ .-+..+|+.++.
T Consensus 366 ~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a 445 (467)
T KOG1358|consen 366 AKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSA 445 (467)
T ss_pred cccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeC
Confidence 34455566677899999999999988887621 1 2334444433345443332222 224579999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy11047 675 RTTNDDITRDWNEIRNTATEI 695 (943)
Q Consensus 675 ~tt~edId~ll~~I~~~~~~l 695 (943)
..++++|+++.+.|++.+..+
T Consensus 446 ~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 446 GMSEEELERAAELIKEVASAV 466 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 385
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=86.82 E-value=11 Score=42.64 Aligned_cols=142 Identities=10% Similarity=-0.083 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCch
Q psy11047 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHS 312 (943)
Q Consensus 233 E~~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHy 312 (943)
..+..++|.++++-+. ....|+.+|||||-.||..||.+.-.... ++ .+.++-+...-|-
T Consensus 61 ~~~la~~L~~~~p~~~----------~~v~f~~sGseAve~Alkla~~~~~~~~~---~~-------r~~il~~~~~yHG 120 (339)
T PF00202_consen 61 AAELAEKLAELFPGGL----------DRVFFANSGSEAVEAALKLARQYHNKRAY---TG-------RRKILAFEGSYHG 120 (339)
T ss_dssp HHHHHHHHHHHSSTTE----------EEEEEESSHHHHHHHHHHHHHHHHHHTHH---HT-------TTEEEEETTTB-T
T ss_pred hhhhhhhhhhcccccc----------ceeeeccCchHHHHHHHHHhhcccccccc---cC-------CceEEEeeeeeec
Confidence 3356667778873222 25789999999999999999943211110 01 2234444555554
Q ss_pred HHHHHHHHC------------CccEEEEecCCCCC-----cCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc---
Q psy11047 313 SVEKAGLIG------------LVNMRYIESDDKLS-----LRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS--- 372 (943)
Q Consensus 313 Sv~KAa~LG------------~~~v~~Vp~D~~gr-----mD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp--- 372 (943)
...-+..++ ...+..+|.++... -....+++.+.+.... ...+++.--.....|.+-|
T Consensus 121 ~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iaavivEPi~g~~G~~~~~~~ 198 (339)
T PF00202_consen 121 RTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNAD--EIAAVIVEPIQGEGGMIPPPPE 198 (339)
T ss_dssp SSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGG--GEEEEEEESSBTTTTSBEE-TT
T ss_pred cCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCC--cEEEEEEeccccccCccccccc
Confidence 333333211 12467777754222 0122233333332221 1344444333334454432
Q ss_pred -HHHhhhhccccccccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 373 -YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 373 -L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++++.+ +|++||+ .+-+|=-+.|+
T Consensus 199 ~l~~l~~--------------------lc~~~gi-------llI~DEV~tG~ 223 (339)
T PF00202_consen 199 YLRELRE--------------------LCREHGI-------LLIADEVQTGF 223 (339)
T ss_dssp HHHHHHH--------------------HHHHTT--------EEEEEETTTTT
T ss_pred hhhehcc--------------------ccccccc-------ceecccccccc
Confidence 667777 9999999 99999888776
No 386
>KOG1402|consensus
Probab=86.38 E-value=50 Score=38.16 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=40.0
Q ss_pred CccEEEEEecCCC-hHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHH
Q psy11047 627 HLGMVVIRLLGEN-ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTA 692 (943)
Q Consensus 627 ~l~iV~Fr~~g~n-~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~ 692 (943)
-++.+.|.....+ .-.-.++-+|..+|.+ --|| .+ ..+||..---.+++|+++-+++|++..
T Consensus 363 l~~ai~i~~~~~~~~~aw~~cl~lk~~g~L-Akpt--H~-~IiRfaPPL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 363 LLNAIVINPSKTSGQDAWDVCLALKENGLL-AKPT--HG-NIIRFAPPLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred eEEEEEeccccccchhHHHHHHcccccccc-cCCC--CC-CeEEecCCcccCHHHHHHHHHHHHHHh
Confidence 3555666644333 2234556667777753 2222 23 389998877889999999999998764
No 387
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=83.99 E-value=0.42 Score=55.00 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=46.3
Q ss_pred ccccccccccccCchH-----HHHHHcCCCC------CccchhhhHHhhhcCCCccccccccccceeeeeec
Q psy11047 382 VKGLGFYKMKLQTNFP-----NFILSYFPKF------QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 442 (943)
Q Consensus 382 ~~d~~~~~i~L~RrfR-----~iar~~Gl~~------~~l~lwLHVDAA~GG~~afeLp~~~~Lg~VcFR~~ 442 (943)
..|+++++++.+|+++ ...+.+|.+| +.+++.-++-......+.|+|++++.++.|||||+
T Consensus 302 ~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 302 SYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp GGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred ccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 3578999999999999 4456677765 44555555555566666789999999999999985
No 388
>KOG2790|consensus
Probab=81.33 E-value=92 Score=35.49 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCCeEEec-CC---CccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHH
Q psy11047 605 RLAQKFEALVLGDPRFEIPA-AR---HLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDD 680 (943)
Q Consensus 605 ~LA~~l~~~L~~~p~~eIl~-~~---~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~ed 680 (943)
+-++.+++.|.+..+|-.+. ++ ...-|+||+. .+++-.++++.-.+++. +.-..++..+-+|+++.-..+-++
T Consensus 278 ~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~-~d~Le~eFLkeA~~~~m--v~LKGhRSVGGiRASlYNAisv~~ 354 (370)
T KOG2790|consen 278 EKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIE-KDELEAEFLKEAAKEHM--VQLKGHRSVGGIRASLYNAISVEE 354 (370)
T ss_pred HHHHHHHHHHHhcCCeEEcccchhhhhhcccceeec-chHHHHHHHHHHHHhhh--hccccccccccchhhhhccccHHH
Confidence 44566777777776766553 22 2334789997 45666666665554442 222234555679998888899999
Q ss_pred HHHHHHHHHHHHH
Q psy11047 681 ITRDWNEIRNTAT 693 (943)
Q Consensus 681 Id~ll~~I~~~~~ 693 (943)
++++++.|++..+
T Consensus 355 ~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 355 VQKLAAFMKEFQK 367 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
No 389
>KOG0633|consensus
Probab=78.59 E-value=48 Score=37.20 Aligned_cols=55 Identities=18% Similarity=0.028 Sum_probs=43.8
Q ss_pred HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCcccccccHHHhhh
Q psy11047 320 IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGT 378 (943)
Q Consensus 320 LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDpL~eIa~ 378 (943)
+....|+.+|.+.++.|+++++.+.++.+.. +.++.+|...+-+|++--.+.|-+
T Consensus 130 iNd~eVvkvpl~pdF~lnvdai~evl~~ds~----iK~~F~tSPgNPtg~~ik~~di~K 184 (375)
T KOG0633|consen 130 INDAEVVKVPLNPDFSLNVDAIAEVLELDSK----IKCIFLTSPGNPTGSIIKEDDILK 184 (375)
T ss_pred cCCceEEEecCCCCccccHHHHHHHHhcccc----ceEEEEcCCCCCCcccccHHHHHH
Confidence 4455899999999999999999999987742 778888888888998854444444
No 390
>KOG1405|consensus
Probab=66.69 E-value=1.6e+02 Score=34.53 Aligned_cols=58 Identities=7% Similarity=-0.106 Sum_probs=37.3
Q ss_pred EEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy11047 631 VVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTAT 693 (943)
Q Consensus 631 V~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~ 693 (943)
++|.++. ..+-..++..+...|. .+..+ |...+|+-.+--.++.|.+-+++.+.++..
T Consensus 425 ~a~d~ps-~~~Rdk~i~~~~~nGv-~~GGC---g~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 425 IAWDCPS-GSIRDKLILIARLNGV-NLGGC---GDKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred EEEeCCC-hHHHHHHHHHHHHcCc-eeccc---ccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 3444432 3344566666666674 45443 456789866666678899999998887754
No 391
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=56.16 E-value=4.7 Score=46.62 Aligned_cols=68 Identities=7% Similarity=-0.231 Sum_probs=16.7
Q ss_pred HCCccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEecCCCc-----ccccccHHHhhhhccccccccccccccC
Q psy11047 320 IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPA-----FLVVDSYCCLGTAMIVKGLGFYKMKLQT 394 (943)
Q Consensus 320 LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~-----tGaIDpL~eIa~~~~~~d~~~~~i~L~R 394 (943)
.++..++.|-+ ..+-...+.+++|.++. .++.-.+-++. ++.+ +++++.+
T Consensus 110 ~sGa~lvEVGt--tN~t~~~Dye~AI~e~T------a~ll~Vh~Sn~~i~GFt~~~-~~~el~~---------------- 164 (367)
T PF03841_consen 110 QSGARLVEVGT--TNRTHLSDYEKAITENT------AALLKVHTSNFRIQGFTGEV-SLEELAE---------------- 164 (367)
T ss_dssp ------------------------------------------------------------HHHH----------------
T ss_pred ccccccccccc--ccccccccccccccccc------cccccccccccccccccccc-cHHHHHH----------------
Confidence 44555555544 45667888999998874 33333332222 2333 5889998
Q ss_pred chHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 395 NFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 395 rfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
++++|++ .+.+|.+-|..
T Consensus 165 ----la~~~~l-------p~i~DlgsG~l 182 (367)
T PF03841_consen 165 ----LAKEHGL-------PVIVDLGSGLL 182 (367)
T ss_dssp ----HHHHHT---------EEEE-TTHHH
T ss_pred ----HHhhcCC-------cEEEECCCCCC
Confidence 9999999 99999987654
No 392
>KOG2040|consensus
Probab=30.87 E-value=3.3e+02 Score=34.47 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCeEEecCCCccEEEEEecCCChHHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHH
Q psy11047 606 LAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDW 685 (943)
Q Consensus 606 LA~~l~~~L~~~p~~eIl~~~~l~iV~Fr~~g~n~l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll 685 (943)
++-.|+..|+.. +-++...+-+-.+-+++... .++++++-.+++.-+. +-+.+.+-+++--.++++||+.++
T Consensus 403 ~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~s---~~~~l~rA~~~~iNlr----~~ed~tigvslDETv~~~DvddLl 474 (1001)
T KOG2040|consen 403 LTLILAEGLKNA-GHELQHKPFFDTLKIRCGCS---AEEVLDRAAKRQINLR----LVEDGTIGVSLDETVTEKDVDDLL 474 (1001)
T ss_pred HHHHHHHHHhhc-chhhccccccceEEEEecCc---HHHHHHHHHhhcCceE----EeecCceEEeecccccHHHHHHHH
Confidence 445555556543 46676666666777777642 4566666554443111 112346777888899999999999
Q ss_pred HHHHH
Q psy11047 686 NEIRN 690 (943)
Q Consensus 686 ~~I~~ 690 (943)
..+.+
T Consensus 475 ~vf~~ 479 (1001)
T KOG2040|consen 475 WVFNE 479 (1001)
T ss_pred HHHcc
Confidence 88774
No 393
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=30.55 E-value=1.1e+02 Score=35.95 Aligned_cols=126 Identities=9% Similarity=0.124 Sum_probs=68.2
Q ss_pred HHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCCchHHHHHHH
Q psy11047 240 LGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL 319 (943)
Q Consensus 240 La~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~aHySv~KAa~ 319 (943)
+|+.||.++.-. ..-| .+||.|.-+||..- + +|| +-.++++..-.-.+++..-
T Consensus 63 yA~vfgaE~ALV--------Rpq~-vSGTHAi~~~Lfg~----L------rpG--------D~ll~~tG~PYDTL~~VIG 115 (403)
T PF06838_consen 63 YADVFGAEDALV--------RPQF-VSGTHAIALALFGV----L------RPG--------DELLSITGKPYDTLEEVIG 115 (403)
T ss_dssp HHHHCT-SEEEE--------ETTS--SHHHHHHHHHHHH------------TT---------EEEESSSS--CCHHHHHT
T ss_pred HHHHhCchhhhh--------cccc-cchHHHHHHHHHhc----C------CCC--------CeEEEcCCCchhhHHHHhC
Confidence 488899875411 1112 35899988887652 2 244 1223444333333455431
Q ss_pred H-----C-----CccEEEEecCCCCCcCHHHHHHHHHHhhccCCCcEEEEEe--cC--CCcccccccHHHhhhhcccccc
Q psy11047 320 I-----G-----LVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSG--LA--LPAFLVVDSYCCLGTAMIVKGL 385 (943)
Q Consensus 320 L-----G-----~~~v~~Vp~D~~grmD~daLe~aI~~d~~kG~~P~~VVaT--aG--TT~tGaIDpL~eIa~~~~~~d~ 385 (943)
+ | +.+...|+..++|.+|.+.++++|+.. +.+|... -| +...-.++.|+++.+
T Consensus 116 ~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~------tk~v~IQRSrGYs~R~sl~i~~I~~~i~------- 182 (403)
T PF06838_consen 116 IRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPN------TKMVLIQRSRGYSWRPSLTIEEIKEIIK------- 182 (403)
T ss_dssp SSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTT------EEEEEEE-S-TTSSS----HHHHHHHHH-------
T ss_pred CCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhccC------ceEEEEecCCCCCCCCCCCHHHHHHHHH-------
Confidence 1 2 236789999999999999999999965 3444433 12 223345677777777
Q ss_pred ccccccccCchHHHHHHcCCCCCccchhhhHHhhhcCC
Q psy11047 386 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGD 423 (943)
Q Consensus 386 ~~~~i~L~RrfR~iar~~Gl~~~~l~lwLHVDAA~GG~ 423 (943)
..|+.+- +.++-||=|||-+
T Consensus 183 -------------~vk~~~p-----~~iifVDNCYGEF 202 (403)
T PF06838_consen 183 -------------FVKEINP-----DVIIFVDNCYGEF 202 (403)
T ss_dssp -------------HHHHH-T-----TSEEEEE-TTTTT
T ss_pred -------------HHHhhCC-----CeEEEEeCCccee
Confidence 7776654 3499999999976
No 394
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=29.33 E-value=4.8e+02 Score=31.17 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCccccccCcCCCCcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecC---CCc
Q psy11047 235 ITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD---QAH 311 (943)
Q Consensus 235 ~Vi~wLa~LlG~p~~fl~~~~~~~~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~---~aH 311 (943)
++.+.+|+|+|.+.+ -++..|.|--|++--..++.......+...|-. -.++...+|+. +.|
T Consensus 73 e~r~l~a~llgv~~~-----------~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~----~~~~vKfLCPvPGYDRH 137 (425)
T PF12897_consen 73 EARELFAELLGVPPE-----------NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWC----KEEKVKFLCPVPGYDRH 137 (425)
T ss_dssp HHHHHHHHHHTS-GG-----------GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GG----GSS--EEEEEES--HHH
T ss_pred HHHHHHHHHhCCCHH-----------HEEEeccchHHHHHHHHHHHHhcCCCCCCCCch----hccCceEEecCCCchHH
Confidence 466778999999875 256666666677666666655433221111110 01345667654 446
Q ss_pred hHHHHHHHHCCccEEEEecCCCCCcCHHHHHHHHHHhhc-cCCCcEEEEEecCCCccccc
Q psy11047 312 SSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKK-KHLIPFFIFSGLALPAFLVV 370 (943)
Q Consensus 312 ySv~KAa~LG~~~v~~Vp~D~~grmD~daLe~aI~~d~~-kG~~P~~VVaTaGTT~tGaI 370 (943)
+++-+. +| .+++.||.+++| -|++.+++.+.+|.. +| +-|.--.++-+|..
T Consensus 138 Fai~E~--~G-iemi~VpM~~dG-PDmD~Ve~LV~~D~svKG----iWcVP~ySNPtG~t 189 (425)
T PF12897_consen 138 FAITEH--FG-IEMIPVPMTEDG-PDMDMVEELVAEDPSVKG----IWCVPKYSNPTGIT 189 (425)
T ss_dssp HHHHHH--CT--EEEEEEEETTE-E-HHHHHHHTHTSTTEEE----EEE-SSS-TTT---
T ss_pred HHHHHh--hC-cEEEecCCCCCC-CCHHHHHHHHhcCCccce----EEeCCCccCCCCcc
Confidence 654332 33 388999998877 599999999987754 33 44555667777866
No 395
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.55 E-value=2.9e+02 Score=32.74 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=68.6
Q ss_pred CcEEEcCChHHHHHHHHHHHHHHHHHhhcccCCCchhhhcCCceEEEecCCC---chHHHHHHHHCCccEEEEec-C-CC
Q psy11047 259 GGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQA---HSSVEKAGLIGLVNMRYIES-D-DK 333 (943)
Q Consensus 259 ~~GvfTsGGTeANL~AL~aAR~~~l~~~~~~~pGl~~~~i~~~~vV~~S~~a---HySv~KAa~LG~~~v~~Vp~-D-~~ 333 (943)
..++=|.|||-|+-+|--. +... .++-.|++|+-+ |..+.+++ |. .+..-|- | ++
T Consensus 95 v~t~Qt~GGTGAL~~~A~f-----l~~~------------~~~~~vwis~PtW~NH~~If~~a--Gl-~v~~Y~Yyd~~~ 154 (396)
T COG1448 95 VATVQTLGGTGALRVAADF-----LARF------------FPDATVWISDPTWPNHKAIFEAA--GL-EVETYPYYDAET 154 (396)
T ss_pred HhheecCCcchHHHHHHHH-----HHHh------------CCCceEEeCCCCcHhHHHHHHhc--CC-ceeeeecccccc
Confidence 3467899999998555322 2111 123348888754 44443333 33 4433331 2 34
Q ss_pred CCcCHHHHHHHHHHhhccCCCcEEEEEecCCCccccccc----HHHhhhhccccccccccccccCchHHHHHHcCCCCCc
Q psy11047 334 LSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDS----YCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQS 409 (943)
Q Consensus 334 grmD~daLe~aI~~d~~kG~~P~~VVaTaGTT~tGaIDp----L~eIa~~~~~~d~~~~~i~L~RrfR~iar~~Gl~~~~ 409 (943)
..+|.+.+-..|+...+ |. +|+.-....+.-.+|| -.+|.+ +.++.|+
T Consensus 155 ~~~df~~mla~L~~a~~-~~---vvLLH~CcHNPTG~D~t~~qW~~l~~--------------------~~~~r~l---- 206 (396)
T COG1448 155 KGLDFDGMLADLKTAPE-GS---VVLLHGCCHNPTGIDPTEEQWQELAD--------------------LIKERGL---- 206 (396)
T ss_pred ccccHHHHHHHHHhCCC-CC---EEEEecCCCCCCCCCCCHHHHHHHHH--------------------HHHHcCC----
Confidence 55999999999987643 32 3333333344434565 557777 8888998
Q ss_pred cchhhhHHhhhcCC
Q psy11047 410 VRLAQKFEALVLGD 423 (943)
Q Consensus 410 l~lwLHVDAA~GG~ 423 (943)
--.+|=||-|+
T Consensus 207 ---ip~~D~AYQGF 217 (396)
T COG1448 207 ---IPFFDIAYQGF 217 (396)
T ss_pred ---eeeeehhhhhh
Confidence 78899999888
No 396
>KOG1403|consensus
Probab=21.89 E-value=1.3e+03 Score=26.91 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccCcEEEeecccCCCcEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy11047 641 LTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELA 700 (943)
Q Consensus 641 l~~~Ll~~L~~~G~~~~s~t~~~g~~~lR~v~~~~tt~edId~ll~~I~~~~~~ll~~~~ 700 (943)
....+..+|.+..++.++.. -.+..+|++-.--..+++++++++..+.++...+...++
T Consensus 385 ~A~~~v~rlke~y~VLlsaD-GPh~NilKiKPPmCFneena~e~v~~ld~iLT~mee~~~ 443 (452)
T KOG1403|consen 385 EAHWVVNRLKELYRVLLSAD-GPHRNILKIKPPMCFNEENADEFVLGLDEILTVMEERLA 443 (452)
T ss_pred HHHHHHHHHHHhhhEEEecC-CCCCceeecCCCcccChhhHHHHHHHHHHHHHHHHHHHh
Confidence 34566778887766666531 223567888433344678899999999988775544444
No 397
>PRK11633 cell division protein DedD; Provisional
Probab=20.36 E-value=2.7e+02 Score=30.53 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCc-EEEeecc-cCCCcEEEEeecCCCCHHHHHHHHHHHHHH
Q psy11047 642 TEKLLKRLNSKGR-LHCVPAS-LRIQGLGRAQNFTRTTNDDITRDWNEIRNT 691 (943)
Q Consensus 642 ~~~Ll~~L~~~G~-~~~s~t~-~~g~~~lR~v~~~~tt~edId~ll~~I~~~ 691 (943)
...|.++|...|. .|+.+.. ..| .+.|+.++++.+.++.+.+...|+++
T Consensus 163 A~~l~~kL~~~G~~Ay~~~~~~~~G-~~tRV~VGP~~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 163 VNEIVAKLRLSGYRVYTVPSTPVQG-KITRIYVGPDASKDKLKGSLGELKQL 213 (226)
T ss_pred HHHHHHHHHHCCCeeEEEeeecCCC-cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4789999999995 3433322 334 48899999999999999998888775
Done!