RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11047
(943 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 300 bits (770), Expect = 2e-93
Identities = 122/206 (59%), Positives = 147/206 (71%), Gaps = 8/206 (3%)
Query: 153 PGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDML 212
PGYLR L+PE+AP+ PE I+GDI K IMPG+T W SP HAYFPA NSYPSLLGDML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 213 SDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTL 272
SDAINC GFTW SSPACTELE + M+WL KM+GLP+EFL + GGGVLQ +SES L
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGS---GEGGGVLQGGSSESNL 117
Query: 273 ICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDD 332
+ LLA RT+ IR+ + + +LVAY SDQAHSS+EKA LI V +R I +D+
Sbjct: 118 LALLAARTKWIRRMKAAGKPS-----LGKLVAYTSDQAHSSIEKAALIAGVELREIPTDE 172
Query: 333 KLSLRGDKLIEAIERDKKKHLIPFFI 358
+RG L +AIE DK+ LIPFF+
Sbjct: 173 NGKMRGMDLEKAIEEDKENGLIPFFV 198
Score = 118 bits (298), Expect = 1e-28
Identities = 61/175 (34%), Positives = 78/175 (44%), Gaps = 62/175 (35%)
Query: 472 GLGRAQNFTIVPS---------SLLRVKNSGALHRTFNVEPLYLRHEN--SGLAIDYMHW 520
G+ RA +F+ P S L V++ GAL + P YL H + S +A+DY W
Sbjct: 249 GIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDW 308
Query: 521 QIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLG 580
QIPLS+RFR LKLWFV+R++G++GLQ IR
Sbjct: 309 QIPLSRRFRILKLWFVLRSYGVEGLQNQIRR----------------------------- 339
Query: 581 FYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRL 635
V LA+ FEALV D RFEI A R LG+V RL
Sbjct: 340 ----------------------HVELAKYFEALVRKDSRFEICAERGLGLVCFRL 372
Score = 44.3 bits (105), Expect = 2e-04
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 409 SVRLAQKFEALVLGDPRFEIPAARHLGMVVIRL 441
V LA+ FEALV D RFEI A R LG+V RL
Sbjct: 340 HVELAKYFEALVRKDSRFEICAERGLGLVCFRL 372
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 227 bits (581), Expect = 2e-65
Identities = 112/266 (42%), Positives = 162/266 (60%), Gaps = 16/266 (6%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G MVD+IADY ++I + V V+PGYLR L+P+SAP +PE D ++ D++ I+PG+T
Sbjct: 19 GHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVT 78
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP AY+P+ +S LG+MLS +N +GF+W +SPA TELE+I ++WL K++ LP
Sbjct: 79 HWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLP 138
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E+FL T GGGV+Q TASE+ L+ LLA R +RK ++ E +LV Y S
Sbjct: 139 EQFLST---GNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALE--------KLVVYAS 187
Query: 308 DQAHSSVEKAGLIGLV---NMRYIESDDK--LSLRGDKLIEAIERDKKKHLIPFFIFSGL 362
DQ HS+++KA I + N R +++D +L + L EAI D LIPFF+ + +
Sbjct: 188 DQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATV 247
Query: 363 ALPAFLVVDSYCCLGTAMIVKGLGFY 388
+ VD LG G+ F+
Sbjct: 248 GTTSSTAVDPLLELGKIAKSNGMWFH 273
Score = 85.3 bits (211), Expect = 3e-17
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 61/225 (27%)
Query: 485 SLLRVKNSGALHRTFNVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542
SLL VK+ AL ++ + P +L+++ S +DY WQIPL +RFR+LKLW V+R +G+
Sbjct: 316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGV 375
Query: 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602
+ LQ +IR
Sbjct: 376 ENLQSYIR---------------------------------------------------N 384
Query: 603 SVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL-------GENILTEKLLKRLNSKGRL 655
++LA++FE LV D RFE+ R +V RL+ N L LL +NS G++
Sbjct: 385 HIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKI 444
Query: 656 HCVPASLRIQGLGR-AQNFTRTTNDDITRDWNEIRNTATEILAEL 699
L + + R A T +T W +++ A+++L +
Sbjct: 445 FISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGKS 489
Score = 42.2 bits (99), Expect = 0.001
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 410 VRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL-------GENILTEKLLKRLNSKGRL 461
++LA++FE LV D RFE+ R +V RL+ N L LL +NS G++
Sbjct: 386 IKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKI 444
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 200 bits (510), Expect = 2e-55
Identities = 111/270 (41%), Positives = 157/270 (58%), Gaps = 22/270 (8%)
Query: 128 GKEMVDYIADYLENIRDRR----VYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIM 183
G MVD+IADY +N++D V V+PGYLR ++P+SAP PE ++ D+ K IM
Sbjct: 63 GHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIM 122
Query: 184 PGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKM 243
PGITHWQSP AY+ + S LG+ML+ ++ +GFTW +SPA TELEII ++WL K+
Sbjct: 123 PGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKL 182
Query: 244 IGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLV 303
+ LP+ FL T GGGV+Q T E+ L+ +LA R ++K ++ + +LV
Sbjct: 183 LQLPDHFLST---GNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT--------LLPQLV 231
Query: 304 AYCSDQAHSSVEKAGLIGLV---NMRYIESDDKLS--LRGDKLIEAIERDKKKHLIPFFI 358
Y SDQ HSS KA LIG + N+R +++D + + + L EAI D K IPFFI
Sbjct: 232 VYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFI 291
Query: 359 FSGLALPAFLVVDSYCCLGTAMIVKGLGFY 388
+ + + VD LG I K G +
Sbjct: 292 CATVGTTSSAAVDPLVPLGN--IAKKYGIW 319
Score = 59.3 bits (143), Expect = 6e-09
Identities = 57/220 (25%), Positives = 85/220 (38%), Gaps = 61/220 (27%)
Query: 485 SLLRVKNSGALHRTFNVEPLYLRHENS--GLAIDYMHWQIPLSKRFRALKLWFVIRNFGI 542
S L VK+ +L P YL + S ++Y WQI LS+RFR+LKLW V+R +G
Sbjct: 364 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGS 423
Query: 543 KGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKFQ 602
+ L+ IR+
Sbjct: 424 ENLRNFIRD--------------------------------------------------- 432
Query: 603 SVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL---GE----NILTEKLLKRLNSKGRL 655
V LA+ FE V DP FE+ R+ +V RL G+ N +LL +NS G++
Sbjct: 433 HVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKI 492
Query: 656 HCVPASLRIQGLGR-AQNFTRTTNDDITRDWNEIRNTATE 694
+L + + R A T +T W I+ A++
Sbjct: 493 FISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532
Score = 36.2 bits (83), Expect = 0.095
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 395 NFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL---GE----NIL 447
N NFI + V LA+ FE V DP FE+ R+ +V RL G+ N
Sbjct: 425 NLRNFIRDH------VNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNER 478
Query: 448 TEKLLKRLNSKGRL 461
+LL +NS G++
Sbjct: 479 NRELLAAVNSTGKI 492
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 177 bits (451), Expect = 4e-49
Identities = 91/335 (27%), Positives = 132/335 (39%), Gaps = 78/335 (23%)
Query: 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHT 253
A F P+LL +ML+ A N + FTW SPA TE+E +NWL K+ GLP
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP------ 54
Query: 254 KVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313
GV + SES L+ LLA R A ++ + +LV CSDQAH S
Sbjct: 55 --SEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGR-----GIDKLVIVCSDQAHVS 107
Query: 314 VEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDK------------------------ 349
VEKA V +R + D+ + + L AI+ DK
Sbjct: 108 VEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPL 167
Query: 350 -------KKHLIPFFI---FSGLALP----AFLV-----VDS---------YCCLG-TAM 380
+K+ + + + G LP L VDS LG +A+
Sbjct: 168 EEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAV 227
Query: 381 IVKGLGFY---KMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMV 437
+V+ L + + + + I + V LA+ L+ DP FE+ +L +V
Sbjct: 228 LVRALKLWATLRRFGRDGYGEHID------RIVDLAKYLAELIRADPGFELLGEPNLSLV 281
Query: 438 VIRLLGE---NILTEKLLKRLNSKGRLHCVPASLR 469
RL + L L RLN +G H +L
Sbjct: 282 CFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG 316
Score = 67.2 bits (165), Expect = 8e-12
Identities = 40/169 (23%), Positives = 51/169 (30%), Gaps = 61/169 (36%)
Query: 528 FRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQ 587
RALKLW +R FG G +HI I
Sbjct: 229 VRALKLWATLRRFGRDGYGEHIDRI----------------------------------- 253
Query: 588 TNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE---NILTEK 644
V LA+ L+ DP FE+ +L +V RL + L
Sbjct: 254 ----------------VDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYD 297
Query: 645 LLKRLNSKGRLHCVPASLRIQGLGRAQNFT----RTTNDDITRDWNEIR 689
L RLN +G H +L G F TT DD +I
Sbjct: 298 LSDRLNERGGWHVPATTL---GGPNVLRFVVTNPLTTRDDADALLEDIE 343
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 84.3 bits (209), Expect = 5e-17
Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 16/216 (7%)
Query: 135 IADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDI-EKVIMPGITHWQSPY 193
+ D R + P + AP + E + ++ ++ E +I + P
Sbjct: 4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPR 63
Query: 194 MHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHT 253
+ P + ++L A+N SPA ELE +N L ++G PEE
Sbjct: 64 ANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS-- 121
Query: 254 KVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSS 313
G + +E+ L+ LLA R E RK + + N CS+ AH S
Sbjct: 122 -------GTFTSGGTEANLLALLAAR-ERWRKRALAESGKPGGKPN----IVCSETAHFS 169
Query: 314 VEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERD 348
EKA + +R + + + D L EAI+ +
Sbjct: 170 FEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDEN 205
Score = 36.6 bits (85), Expect = 0.061
Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 58/190 (30%)
Query: 479 FTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIR 538
+ ++ ++ AL R YL G ++ +AL L+ +R
Sbjct: 279 LAPIGCGVVLFRDEEALRRILIFADYYLP---GGGIPNFTILGSRPG--RQALALYANLR 333
Query: 539 NFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYF 598
G +G +K +
Sbjct: 334 RLGREGYRKLLD------------------------------------------------ 345
Query: 599 PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 658
+++ LA+ + FE+ L +V RL + L +RL+ +G V
Sbjct: 346 ---RTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQ--V 400
Query: 659 PASLRIQGLG 668
PA L +GL
Sbjct: 401 PAQLLPKGLA 410
>gnl|CDD|222532 pfam14087, DUF4267, Domain of unknown function (DUF4267). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria and eukaryotes. Proteins in this family are
typically between 126 and 142 amino acids in length.
Length = 112
Score = 35.7 bits (83), Expect = 0.021
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 519 HWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIV 576
+ +P + IKG R+I GLAL A L+ LG ++
Sbjct: 22 GFGLPAPPADSKTAAALMR----IKG----ARDIALGLALLALLLFGKRRALGWVLLA 71
>gnl|CDD|224488 COG1572, COG1572, Uncharacterized conserved protein [Function
unknown].
Length = 606
Score = 32.5 bits (74), Expect = 1.1
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 816 SDKDKLEEYAEAELSQGQEKTELTNGDPADSQPYAKTGVKTDLKTEANKDLRKIENKEPH 875
D + + LS G+E T N P A G +L+ +KD E+ E +
Sbjct: 333 IDGELVGTTDIPSLSSGEESTISFNW------PPACEGESVELRVVNDKDNTVAESNENN 386
Query: 876 SSETKTVLKTEESLSIPIIDVLDASSVDTRLNEEI 910
+ TK V L PI+D+ ++ D +
Sbjct: 387 NEVTKVVDINPAEL--PILDLEVVATADAGSLTQE 419
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 31.9 bits (73), Expect = 1.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 303 VAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPF 356
Y S H SV K + + R I S + D LI I+ +K + I F
Sbjct: 112 TLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIF 165
>gnl|CDD|237811 PRK14767, PRK14767, lipoprotein signal peptidase; Provisional.
Length = 174
Score = 30.4 bits (69), Expect = 2.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 345 IERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAM-IVKGLGFYK 389
I+R +++ F F + P F V D Y + T + I+ L +YK
Sbjct: 113 IDRILNGYVVDFIYFKLINFPIFNVADIYVTVSTFLFIILFLFYYK 158
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 30.7 bits (68), Expect = 4.5
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 770 DSNDSPSMRRRIRGILMSGKQ---FSLDSRMDLISGDNTRTHTTPTSDNSDKDKLEEYAE 826
D+ SPS+ + SGK + ++ ++ S T T T+ N K A
Sbjct: 501 DNKQSPSVEKENDASSESGKDKTPATKPAKGEVESSSTTPTKVVSTTQNVAKPTT---AS 557
Query: 827 AELSQGQEKTELTNGDPADSQPYAKTGVK--TDLKTEANKDLRKIENKEPHSSETKTVLK 884
+E ++ +T + + DS P K +K D T++ + ENK S +T +
Sbjct: 558 SETTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNKNTQENKA--KSLPQTGEE 615
Query: 885 TEESLSIPIIDVLDASSV 902
+ + +++P++ +L SS+
Sbjct: 616 SNKDMTLPLMALLALSSI 633
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 29.3 bits (66), Expect = 5.2
Identities = 10/59 (16%), Positives = 15/59 (25%)
Query: 828 ELSQGQEKTELTNGDPADSQPYAKTGVKTDLKTEANKDLRKIENKEPHSSETKTVLKTE 886
ELS ++ E T + D E K E +T+
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 30.2 bits (69), Expect = 6.4
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 207 LLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGL-PEEF 250
LL +LSD L F SP TEL+ WL ++ G+ PEEF
Sbjct: 378 LLAAILSDT---LLFK---SPTTTELDREAAEWLAEIAGIDPEEF 416
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 29.3 bits (66), Expect = 6.8
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 412 LAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENIL--TEKLLKRLNSKGRLHCVPASLR 469
LA LV G R +P AR +LL I E L +RL +GR +
Sbjct: 91 LAAGDVVLVNGS-RAVLPQARRR---YPQLLVVCITASPEVLAQRLAERGRES--REEIL 144
Query: 470 IQGLGRAQNFTIVPSSLLRVKNSGAL 495
L RA +T P + + NSG L
Sbjct: 145 -ARLARAARYTAGPGDVTTIDNSGEL 169
>gnl|CDD|224335 COG1417, COG1417, Uncharacterized conserved protein [Function
unknown].
Length = 288
Score = 29.7 bits (67), Expect = 6.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 310 AHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAI----ERDKKKHLIPF 356
+EK L+G++N+ Y+E + K K+ + PF
Sbjct: 138 RDGRIEKGDLLGVLNVYYVELGEFNPRILQKSTVEAKGVYRTGKEVRVKPF 188
>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional.
Length = 386
Score = 29.9 bits (68), Expect = 7.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 145 RRVYPDVKP---GYL--RSLVPESAPVEPEKWDTIMGDIEKVIMPG 185
++ PDV+P GY+ R LV E+A + PE + + PG
Sbjct: 158 AQLLPDVRPTYAGYVAWRGLVDEAA-LPPEARAALRDRFTFQLGPG 202
>gnl|CDD|144935 pfam01525, Rota_NS26, Rotavirus NS26. Gene 11 product is a
non-structural phosphoprotein designated as NS26.
Length = 212
Score = 29.2 bits (65), Expect = 9.0
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 786 MSGKQFSLDSRMDLISGDNTRTHTTPTSDNSDKDKLEEYAEAELSQ-GQEKTELTNGDPA 844
MS +LD+ D + + + + T+ S N +++ E ELS K +T D
Sbjct: 1 MSDFGINLDAICDNVKKNESSSRTSSQSSNRSSRRMDFVDEEELSTYFNSKASVTQSDSC 60
Query: 845 DSQPYAKTGVKTD-LKTEANK--DLRKIENKEPHSSETKTVLKTEESLSIPIIDVLDASS 901
+ K + ++ +K + + + K TV + + S+ ++D D S
Sbjct: 61 SNDLATKFSIISEAVKCDESAHVSADASQEKRE------TVDQMDFSVMKWMMDSHDGIS 114
Query: 902 VDTRLN 907
V+ +N
Sbjct: 115 VNGGIN 120
>gnl|CDD|173133 PRK14670, uvrC, excinuclease ABC subunit C; Provisional.
Length = 574
Score = 29.5 bits (66), Expect = 9.1
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 673 FTRTTNDDITRDWNEIRNTATEILAELAEETQRV--QVTKRTRVPLKETKGRN--ALFGS 728
F + +IT+ NE++NT TEI+ + +E ++ ++ L+E + AL
Sbjct: 289 FKKIDTKNITKLINELKNTKTEIIYKETKEIIKIMEMAISNAKLALREYENEKNKALESL 348
Query: 729 SLLLANSPMSPKIMNG 744
++L + PK + G
Sbjct: 349 KIILEMDKL-PKTIEG 363
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 29.4 bits (67), Expect = 9.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 681 ITRDWNEIRNTATEILAELAEETQRVQV 708
+ DW E+R+ A ++L AE + V++
Sbjct: 449 VDPDWRELRDEAMDLLQREAELQEIVRL 476
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,279,245
Number of extensions: 4860725
Number of successful extensions: 3977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3959
Number of HSP's successfully gapped: 36
Length of query: 943
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 837
Effective length of database: 6,236,078
Effective search space: 5219597286
Effective search space used: 5219597286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.6 bits)