RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11047
(943 letters)
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 319 bits (820), Expect = 1e-99
Identities = 150/231 (64%), Positives = 186/231 (80%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
G+EMVDYI YL +R+RRV PDV+PGYLR+ +PESAP +P+ WD+I GDIE++IMPG+
Sbjct: 15 GREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV 74
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HWQSP+MHAY+PAL S+PSLLGDML+DAINCLGFTWASSPACTELE+ M+WL KM+GLP
Sbjct: 75 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLP 134
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FLH S GGGVLQ+T SESTLI LLA R I + + S P+ + + +N+RLVAY S
Sbjct: 135 EHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYAS 194
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
DQAHSSVEKAGLI LV M+++ DD SLRG+ L +AIE DK++ L+P F+
Sbjct: 195 DQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245
Score = 174 bits (443), Expect = 5e-47
Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 71/245 (28%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH 519
++G+ A +FT P + VK+ L +TF+V P+YLRH NSG+A D+MH
Sbjct: 293 FLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMH 352
Query: 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579
WQIPLS+RFR++KLWFVIR+FG+K LQ H+R
Sbjct: 353 WQIPLSRRFRSVKLWFVIRSFGVKNLQAHVR----------------------------- 383
Query: 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639
+A+ FE+LV DP FEIPA RHLG+VV RL G N
Sbjct: 384 ----------------------HGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPN 421
Query: 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGR------AQNFTRTTNDDITRDWNEIRNTAT 693
LTE +LK + GRL +PA+++ + + TT DDI RDWN IR+ AT
Sbjct: 422 SLTENVLKEIAKAGRLFLIPATIQ----DKLIIRFTVTSQ-FTTRDDILRDWNLIRDAAT 476
Query: 694 EILAE 698
IL++
Sbjct: 477 LILSQ 481
Score = 70.9 bits (174), Expect = 7e-13
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+A+ FE+LV DP FEIPA RHLG+VV RL G N LTE +LK + GRL +PA+
Sbjct: 384 HGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPAT 443
Query: 468 LR 469
++
Sbjct: 444 IQ 445
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 313 bits (805), Expect = 2e-97
Identities = 136/231 (58%), Positives = 175/231 (75%), Gaps = 1/231 (0%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGGV+Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY S
Sbjct: 130 EAFLAGE-AGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
DQAHSSVE+AGLIG V ++ I SD K ++R L EA+ERDK LIPFF+
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239
Score = 166 bits (423), Expect = 3e-44
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 73/247 (29%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENSG--LAIDY 517
+ G+ A +F P S + VK L F ++P+YL+H + G L DY
Sbjct: 287 LLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDY 346
Query: 518 MHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577
HWQ+PL +RFR+LK+WFV R +G+KGLQ +IR+
Sbjct: 347 RHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHV------------------------ 382
Query: 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLG 637
+L+ +FEA VL DPRFE+ A LG+V RL G
Sbjct: 383 ---------------------------QLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 638 ENILTEKLLKRLNSKGRLHCVPASLRIQGLGR------AQNFTRTTNDDITRDWNEIRNT 691
+ L E LL+R+NS ++H VP LR G+ + + + + W IR
Sbjct: 416 SDGLNEALLERINSARKIHLVPCRLR----GQFVLRFAICSR-KVESGHVRLAWEHIRGL 470
Query: 692 ATEILAE 698
A E+LA
Sbjct: 471 AAELLAA 477
Score = 70.9 bits (174), Expect = 9e-13
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H VP
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCR 439
Query: 468 LR 469
LR
Sbjct: 440 LR 441
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 303 bits (777), Expect = 2e-93
Identities = 131/231 (56%), Positives = 174/231 (75%), Gaps = 2/231 (0%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
K MVD+IA+YLENIR+RRV P+VKPGYL+ L+P++AP +PEKW +M DIE+VIMPG+T
Sbjct: 10 AKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SP HAYFP NSYP+++ DMLS AI C+GFTW +SPACTELE++ M+WLGKM+ LP
Sbjct: 70 HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
EFL GGGV+Q TASESTL+ LL + + +++ ++ HPE + I +LV YCS
Sbjct: 130 AEFLACS-GGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
DQAHSSVE+AGL+G V +R ++ + +RG L +AIE+D + LIPF+
Sbjct: 189 DQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYA 238
Score = 175 bits (446), Expect = 2e-47
Identities = 75/246 (30%), Positives = 109/246 (44%), Gaps = 73/246 (29%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH 519
++G+ A +F P S + +K+ + FNV+PLYL+H+ G A DY H
Sbjct: 286 LMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRH 345
Query: 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579
WQIPL +RFRALKLWFV+R +G++ LQ HIR
Sbjct: 346 WQIPLGRRFRALKLWFVLRLYGVENLQAHIR----------------------------- 376
Query: 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639
+ A++F L + D RFE+ A ++G+V RL G N
Sbjct: 377 ----------------------RHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSN 414
Query: 640 ILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR-------TTNDDITRDWNEIRNTA 692
E LLKR+N +G +H VPA ++ F R T ++D+ W E+ A
Sbjct: 415 ERNEALLKRINGRGHIHLVPAKIK----DV--YFLRMAICSRFTQSEDMEYSWKEVSAAA 468
Query: 693 TEILAE 698
E+ E
Sbjct: 469 DEMEQE 474
Score = 71.3 bits (175), Expect = 5e-13
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+ A++F L + D RFE+ A ++G+V RL G N E LLKR+N +G +H VPA
Sbjct: 377 RHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAK 436
Query: 468 LR 469
++
Sbjct: 437 IK 438
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 286 bits (734), Expect = 6e-87
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 22/239 (9%)
Query: 128 GKEMVDYIADYLENIRDR--RVYPDVKPGYLRSLVPE---SAPVEPEKWDTIMGDIEKVI 182
E+VD + +Y+ DR +V P L + PE + I+ D +
Sbjct: 25 LLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTL 84
Query: 183 MPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGK 242
G+ P L G+ L+ N FT+ +P +E IT+ + +
Sbjct: 85 KYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMRE 143
Query: 243 MIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRL 302
++G + G G+ + S + ++A R + + + + +L
Sbjct: 144 IVGWSSKD--------GDGIFSPGGAISNMYSIMAARYKYFPEVKT-----KGMAAVPKL 190
Query: 303 VAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
V + S+Q+H S++KAG G N+ I+ +++ + I K+K +PF++
Sbjct: 191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 249
Score = 135 bits (342), Expect = 1e-33
Identities = 36/263 (13%), Positives = 62/263 (23%), Gaps = 91/263 (34%)
Query: 469 RIQGLGRAQNFTIVP---------SSLLRVKNSGALHRTFNVEPLYLRHENS--GLAIDY 517
++ G+ RA + T P S + VK G L + YL + ++ D
Sbjct: 297 KLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDT 356
Query: 518 MHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVK 577
I + K W + + G G + I
Sbjct: 357 GDKAIQCGRHVDIFKFWLMWKAKGTVGFENQIN--------------------------- 389
Query: 578 GLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEI--PAARHLGMVVIRL 635
+ + LA+ A + FE+ V
Sbjct: 390 ------------------------KCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWY 425
Query: 636 LGE---------------NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF------- 673
+ + + + K+ + G Q G NF
Sbjct: 426 IPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGY-----QPQGDKANFFRMVISN 480
Query: 674 TRTTNDDITRDWNEIRNTATEIL 696
T DI EI ++
Sbjct: 481 PAATQSDIDFLIEEIERLGQDLH 503
Score = 44.7 bits (106), Expect = 1e-04
Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 17/79 (21%)
Query: 408 QSVRLAQKFEALVLGDPRFEI--PAARHLGMVVIRLLGE---------------NILTEK 450
+ + LA+ A + FE+ V + + + + K
Sbjct: 390 KCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPK 449
Query: 451 LLKRLNSKGRLHCVPASLR 469
+ + G
Sbjct: 450 IKALMMESGTTMVGYQPQG 468
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 278 bits (714), Expect = 4e-84
Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 16/237 (6%)
Query: 127 VGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPE-SAPVEPEKWDTIMGDIEKVIMPG 185
V + E + Y + P L + + +++ D+ +++
Sbjct: 37 VMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKN 94
Query: 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIG 245
Q P A+ P++ + + A+N +W + + T +E +NWL
Sbjct: 95 AIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYD 154
Query: 246 LPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHP-ELEHAEINSRLVA 304
L E+ G+ + ++S + L+ R K +L + +L
Sbjct: 155 LSEK---------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRI 205
Query: 305 YCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
CS ++H +V+K+ +G + ++++ ++ KL E I + K + LIPF I
Sbjct: 206 VCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAI 262
Score = 146 bits (371), Expect = 2e-37
Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 79/248 (31%)
Query: 469 RIQGLGRAQNFTI-------VP--SSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMH 519
R++G+ RA + ++ L V + + YL E+ L + +
Sbjct: 309 RLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDEL-PNLVD 366
Query: 520 WQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGL 579
I +KRF ALK++ ++N G K L
Sbjct: 367 KSIATTKRFDALKVFMTMQNVGPKALGDMYD----------------------------- 397
Query: 580 GFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE- 638
+ + ++ + +FE+ A L V+ R E
Sbjct: 398 ----------------------HLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHET 435
Query: 639 ---NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTR-------TTNDDITRDWNEI 688
+ L + L ++G + G+ + T D ++I
Sbjct: 436 ADLDELNKALRLEALTRGIAVLGETIVD----GK--TALKFTILNPCLTTSDFESLLSKI 489
Query: 689 RNTATEIL 696
A E++
Sbjct: 490 NMLAVELV 497
Score = 62.7 bits (153), Expect = 3e-10
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE----NILTEKLLKRLNSKGRLHC 463
+ + ++ + +FE+ A L V+ R E + L + L ++G
Sbjct: 398 HLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVL 457
Query: 464 VPASLR 469
+
Sbjct: 458 GETIVD 463
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 276 bits (709), Expect = 4e-83
Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 20/235 (8%)
Query: 127 VGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGI 186
V +VD ++ ++V +P L+ L+ + E I+ VI +
Sbjct: 46 VFGVVVDEAIQKGTSVS-QKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSV 104
Query: 187 THWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGL 246
P + +L G ++++++N +T+ +P +E + L ++G
Sbjct: 105 KTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW 163
Query: 247 PEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYC 306
G G+ S S + + R + +Q L +
Sbjct: 164 SS----------GDGIFCPGGSISNMYAVNLARYQRYPDCKQ-----RGLRTLPPLALFT 208
Query: 307 SDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFI 358
S + H S++K +G ++R +++D++ + + L I + + +PF +
Sbjct: 209 SKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263
Score = 133 bits (336), Expect = 8e-33
Identities = 36/260 (13%), Positives = 70/260 (26%), Gaps = 88/260 (33%)
Query: 469 RIQGLGRAQNFTI-------VP--SSLLRVKN-SGALHRTFNVEPLYLRHENS--GLAID 516
+ G+ RA + S L +++ S L R + YL ++ +A+D
Sbjct: 311 LLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALD 370
Query: 517 YMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIV 576
+ +R LKLW + + G +GL++ I
Sbjct: 371 TGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRID-------------------------- 404
Query: 577 KGLGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLL 636
Q+ LA+ + FE+ V +
Sbjct: 405 -------------------------QAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFV 439
Query: 637 GE---------------NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNF------TR 675
+ + L +R+ +G + R F +
Sbjct: 440 PPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHG----TRGNFFRVVVANSA 495
Query: 676 TTNDDITRDWNEIRNTATEI 695
T D+ NE+ ++
Sbjct: 496 LTCADMDFLLNELERLGQDL 515
Score = 48.5 bits (116), Expect = 7e-06
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE---------------NILTEKLL 452
Q+ LA+ + FE+ V + + + L
Sbjct: 405 QAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLK 464
Query: 453 KRLNSKGRLH 462
+R+ +G +
Sbjct: 465 ERMVKEGSMM 474
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 73.0 bits (179), Expect = 2e-13
Identities = 35/233 (15%), Positives = 70/233 (30%), Gaps = 25/233 (10%)
Query: 117 RKIPLIPVILVGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMG 176
+I I D D+L ++R + +KP R P I+
Sbjct: 31 CEIRGIQSQP--PARRDPTMDWLASLRSQ-----IKPYRDRFPSHARLPRAGLPRAEILA 83
Query: 177 DIEKVIMPGITHWQSPYMHAYFPALNSYP-SLLGDMLSDAINCLGFTWASSPACTELEII 235
+I + W+ Y + + + L ++ + P+ + E
Sbjct: 84 EIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAE 143
Query: 236 TMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEH 295
+ M+G G + + +ES LLA + R + ++ +
Sbjct: 144 VVAMTAHMLGGDAA------GGTVCGTVTSGGTES---LLLAMK--TYRDWARATKGITA 192
Query: 296 AEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERD 348
E AH++ +KA + + D + EAI +
Sbjct: 193 PEA------VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.2 bits (179), Expect = 3e-13
Identities = 84/443 (18%), Positives = 140/443 (31%), Gaps = 164/443 (37%)
Query: 197 YFPAL----NSYPSLLGDMLSDAINCLGFTWASSPACTE-----LEIITMNWLGKMIGLP 247
YF L +Y L+GD++ + L ++ + L I + WL P
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI--LEWLENPSNTP 226
Query: 248 -EEFL-HTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAY 305
+++L + P GV+Q T L G T E+ S L
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVT--AKLLGFT--------------PGELRSYL--- 267
Query: 306 CSDQAHSSVEKAGLIGLVNMRYI-ESDDKLSLRGDKLIEAIERDKKKHLIPFFI------ 358
+ + + GLV I E+D S + +AI + FFI
Sbjct: 268 ---KGATGHSQ----GLVTAVAIAETDSWESFF-VSVRKAIT-------VLFFIGVRCYE 312
Query: 359 -FSGLALPAFLVVDSYCCLG----TAMI-VKGLGFYKMKLQ-----TNFPNFILSYFPKF 407
+ +LP ++ DS + M+ + L + ++Q TN S+ P
Sbjct: 313 AYPNTSLPPSILEDS-LENNEGVPSPMLSISNLT--QEQVQDYVNKTN------SHLPAG 363
Query: 408 QSVRLAQKFEALVLGDPRFEI---PAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCV 464
+ V + +LV G + P + L LN R
Sbjct: 364 KQVEI-----SLVNGAKNLVVSGPPQS--------------------LYGLNLTLRKAKA 398
Query: 465 PASL---RIQGLGRAQNFTI------VP--SSLLRVKNSGALHR----------TFNVE- 502
P+ L RI R F+ P S LL A +FN +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV----PASDLINKDLVKNNVSFNAKD 454
Query: 503 ---PLY-------LRHENSGLA---IDYM-----HWQIPLSKRFRALKLWFVIRNFG--- 541
P+Y LR + ++ +D + W + +F+A + +FG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKA--THIL--DFGPGG 508
Query: 542 ---IKGLQKH------IREIFSG 555
+ L +R I +G
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAG 531
Score = 65.5 bits (159), Expect = 8e-11
Identities = 113/667 (16%), Positives = 200/667 (29%), Gaps = 228/667 (34%)
Query: 176 GDIEKVIM-PGITHWQSPYMHAYFPALNSYPS--LLGDMLSDAINCLGFTWASSPACTEL 232
G +E V++ P + + + + F + P+ D D ++PA EL
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD---DEP--------TTPA--EL 60
Query: 233 EIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPE 292
+GK +G ++ + V+ G L TE Y
Sbjct: 61 -------VGKFLG----YVSSLVEPSKVG--------QFDQVLNLCLTEFENCY------ 95
Query: 293 LEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDK-----LIEAIER 347
LE +I++ L A + +++ K + + N YI + DK L A+
Sbjct: 96 LEGNDIHA-LAAKLLQENDTTLVKTKEL-IKN--YITARIMAKRPFDKKSNSALFRAVGE 151
Query: 348 DKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILSYFPKF 407
+ IF G Q N YF +
Sbjct: 152 GNAQ---LVAIFGG-------------------------------QGN----TDDYFEEL 173
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKR-------LNSKGR 460
+ L Q + LV GD +A L L+ + EK+ + L +
Sbjct: 174 RD--LYQTYHVLV-GD--LIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 461 ------LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLA 514
L +P S + G+ + ++ + + P LR G
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVT-------------AKLLGFTPGELRSYLKGAT 271
Query: 515 IDYMHWQ-------IPLSK---RF-----RALKLWFVIRNFGIKGLQKHIREIFSGLALP 559
H Q I + F +A+ + F I G++ + E + +LP
Sbjct: 272 G---HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI------GVRCY--EAYPNTSLP 320
Query: 560 AFLVVDSYCCLG----TAMI-VKGLGFYKMKLQ-----TN--FP--------------NF 593
++ DS + M+ + L + ++Q TN P N
Sbjct: 321 PSILEDS-LENNEGVPSPMLSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 594 ILSYFPKFQS-VRLAQKFEAL--VLGDPRFEIP-AARHLGMVVIR-----------LLGE 638
++S P QS L G + IP + R L R LL
Sbjct: 378 VVSGPP--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNRFLPVASPFHSHLLVP 434
Query: 639 NILTEKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAE 698
++ + K L + ++I D T D +++R + I
Sbjct: 435 --ASDLINKDLVKNN-VSFNAKDIQI-----------PVYD--TFDGSDLRVLSGSISER 478
Query: 699 LAEE--TQRVQVTKRTRVPLKETKGRNAL-FGSSLLLANSPMSPKIMNGS-----FAAVF 750
+ + V+ T+ K T L FG ++ + +G+ A
Sbjct: 479 IVDCIIRLPVKWETTTQ--FKATH---ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 751 D---ADE 754
D D+
Sbjct: 534 DINPDDD 540
Score = 58.1 bits (140), Expect = 1e-08
Identities = 99/559 (17%), Positives = 166/559 (29%), Gaps = 205/559 (36%)
Query: 503 PLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFSGLAL---- 558
PL L H G ++++ +P + F A +L F K + E G A
Sbjct: 8 PLTLSH---G-SLEH-VLLVPTASFFIASQLQ---EQF-----NKILPEPTEGFAADDEP 54
Query: 559 --PAFLVVDSYCCLGTAMIVKGLGFYKMKLQTN----FPNFILSYFPKFQSVRLAQK--- 609
PA LV K LG+ ++ + F + +F++ L
Sbjct: 55 TTPAELVG------------KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 610 -FEALVLGDPRFEIPAARHLGMVVIR--LLGENILTEKLLKRLNSKGRLHCVPA-SLRI- 664
A +L + + + +I+ + + K+ NS V + ++
Sbjct: 103 ALAAKLLQENDTTLVKTKE----LIKNYITARIMAKRPFDKKSNSA-LFRAVGEGNAQLV 157
Query: 665 -----QGLGRAQNFTRTTNDDITRDWNEIRN--------------TATEILAELAEETQR 705
QG DD + E+R+ + E L+EL T
Sbjct: 158 AIFGGQG----------NTDDY---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 706 VQ------------VTKRTRVPLKETKGRNALFGSSLLLANSPMS-PKIMNGSFAAVFDA 752
+ + + P L + P+S P I A
Sbjct: 205 AEKVFTQGLNILEWLENPSNTP------------DKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 753 DESIMNGWTHG---------------------IAQIQCDSNDS--PSMRRRIRGILMSGK 789
+ + G+T G IA+ DS +S S+R+ I + G
Sbjct: 253 AKLL--GFTPGELRSYLKGATGHSQGLVTAVAIAE--TDSWESFFVSVRKAITVLFFIGV 308
Query: 790 -------QFSLDSRMDLISGDNTRTHTTPTS----DNSDKDKLEEYAE---AELSQGQEK 835
SL + S +N P+ N ++++++Y + L G ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQ 365
Query: 836 TE--LTNGD-------PADSQPYAKTGVKTDL---KTEANKDLRKIENKE---------- 873
E L NG P P + G+ L K + D +I E
Sbjct: 366 VEISLVNGAKNLVVSGP----PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 874 ----P-HSS-------------ETKTVLKTEESLSIPIIDVLDASSVDTR-LNEEIACGA 914
P HS V + + IP+ D D S D R L+ I
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS--DLRVLSGSI---- 475
Query: 915 RDVPRHKVGEDQTKRAPIH 933
R D R P+
Sbjct: 476 --SERIV---DCIIRLPVK 489
Score = 36.6 bits (84), Expect = 0.053
Identities = 57/336 (16%), Positives = 94/336 (27%), Gaps = 122/336 (36%)
Query: 579 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE 638
GF + + N P + +F + R+ + + A++ FE
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIV------------DG 1699
Query: 639 NILTEKLLKRLNSKGRLHCV--PASLRIQGLGRAQNFTRTTNDDITRDWNEIRNT--ATE 694
+ TEK+ K +N + L L + T + T A
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGL----L------SAT------------QFTQPA-- 1735
Query: 695 ILA-ELAEETQRVQVTKRTRVPLKETKG---RNALF-GSSL-----LLANSPMSPKIMNG 744
+ E A LK KG +A F G SL L +
Sbjct: 1736 LTLMEKAA----------FED-LKS-KGLIPADATFAGHSLGEYAALAS----------- 1772
Query: 745 SFAAVFDADESIMNGWTHGIAQIQCDSNDSPSMRR--RIRGILMSG---KQFSLDSRMDL 799
A V + + RG+ M + S +
Sbjct: 1773 -LADVMSIESLV----------------------EVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 800 ISGDNTRTHTTPTSDNSDKDKLEEYAEAELSQGQEKTELTNGDPADSQPYAKTGVKTDLK 859
I+ + R + ++ L+ E + E+ N + + Q Y G L
Sbjct: 1810 IAINPGRVAAS-----FSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-YVAAGDLRALD 1863
Query: 860 T-----EANKDLRKIENKE-PHSSETKTVLKTEESL 889
T K L+KI+ E S + V E L
Sbjct: 1864 TVTNVLNFIK-LQKIDIIELQKSLSLEEV---EGHL 1895
Score = 33.9 bits (77), Expect = 0.37
Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 63/204 (30%)
Query: 385 LGFYKMKLQTNFPNFILSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGE 444
GF + + N P + +F + R+ + + A++ FE
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIV------------DG 1699
Query: 445 NILTEKLLKRLNSKGRLHCV--PASLRIQGLGRAQN-----FTIVPSSLLRV-KNSGALH 496
+ TEK+ K +N + L L Q + + K+ G
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGL----LSATQFTQPALTL-MEKAAFEDLKSKGL-- 1752
Query: 497 RTFNVEPLYLRH---ENSGLAI--DYMHWQIPLSKRFRALKLWFVIRNFGIKGLQKHIRE 551
+ + H E + LA D M + +++ V R
Sbjct: 1753 --IPADATFAGHSLGEYAALASLADVM----SIES---LVEV--V-----------FYR- 1789
Query: 552 IFSGLALPAFLVVDSYCCLGTAMI 575
G+ + + D MI
Sbjct: 1790 ---GMTMQVAVPRDELGRSNYGMI 1810
Score = 30.8 bits (69), Expect = 3.3
Identities = 24/219 (10%), Positives = 59/219 (26%), Gaps = 87/219 (39%)
Query: 162 ESAPVEPEKWDTIMGDIEKVIMPGITHWQSPY--------------MHAYFPALNS---- 203
+++ + W+ D H++ Y + +F
Sbjct: 1637 KTSKAAQDVWNR--AD---------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 204 --YPSLLGDMLSDAINCLGFTWASSPACTEL-EIITMNWLGKMIGLPEEFLHTKVDSPGG 260
Y +++ + + D ++ + I + + L
Sbjct: 1686 ENYSAMIFETIVDG----------KLKTEKIFKEINEHSTSYTFRSEKGLLS-------- 1727
Query: 261 GVLQTTASESTLICLLAGRTE-AIRKYQQSHPELEHAEINSRLVAYCSDQA-HS----S- 313
T + T L E A ++ +L+ + + A HS +
Sbjct: 1728 ---AT---QFTQPALTL--MEKAA--FE----DLKSKGLIPADATF----AGHSLGEYAA 1769
Query: 314 -VEKAGLIGLVNMRYIESDDKLSL---RGDKLIEAIERD 348
A ++ + + + + RG + A+ RD
Sbjct: 1770 LASLADVMSI--------ESLVEVVFYRGMTMQVAVPRD 1800
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 59.5 bits (144), Expect = 3e-09
Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 33/228 (14%)
Query: 127 VGKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVI-MPG 185
+ + + ++I D + D + L P D ++ ++ K+ +
Sbjct: 6 LRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQL-----PSNGIPQDDVIEELNKLNDLIP 60
Query: 186 ITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFT----WASSPACTELEIITMNWLG 241
T W+ + L + + A PA ++E ++ +
Sbjct: 61 HTQWKEGKVSGAVY---HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVL 117
Query: 242 KMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301
+M P + G G + +ES L+ L+ + A+ + PE+
Sbjct: 118 RMFNAPSD--------TGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEI-------- 161
Query: 302 LVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAIERD 348
AH+ +KA + +R++E D + K+ + I ++
Sbjct: 162 ---IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 3e-09
Identities = 73/453 (16%), Positives = 139/453 (30%), Gaps = 95/453 (20%)
Query: 6 NEKVLQ--SVQIFKIGKWVEISVLGSPDSKKVVFSQWSVRLH----FNNVNFFVCNNPRQ 59
+ KV +IF W+ + SP++ V+ + + + + N +
Sbjct: 173 SYKVQCKMDFKIF----WLNLKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 60 GN---GGLHRGLPGKYQGPSCL----SRCEAGIFAQFGPGIRTILITLVICLSLGKIFVV 112
+ L R L K +CL + A + F + +L T ++ F+
Sbjct: 227 IHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD---FLS 282
Query: 113 NPQSRKIPLIPVI--LVGKEMVDYIADYLENIRD--RRVYPDVKPGYLRSLVPESAPVEP 168
+ I L L E+ + YL+ R P L S++ ES
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGL 341
Query: 169 EKWD---TIMGD-IEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDA---INCLGF 221
WD + D + +I + + F L+ +P A L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPTILLSL 394
Query: 222 TWASSPACTELEIITMNWLGK-----------MIGLPEEFLHTKVDSPGGGVLQTTASES 270
W +++ ++ +N L K I +P +L KV L
Sbjct: 395 IWFDVIK-SDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-----HR 447
Query: 271 TLICLLAGRTEAIRKYQQSHPELEHAE--INSRLVAYCSDQAH-SSVEKAGLIGLVNMRY 327
+++ + + + + S + + H ++E + L M +
Sbjct: 448 SIV----DHYNIPKTFDSDDLIPPYLDQYFYSHI-GH-----HLKNIEHPERMTLFRMVF 497
Query: 328 IESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMIVKGLGF 387
L R +E K +H + SG L + Y I
Sbjct: 498 ------LDFR---FLEQ----KIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPK 540
Query: 388 YKMKLQTNFPNFILSYFPKFQSVRLAQKFEALV 420
Y+ + IL + PK + + K+ L+
Sbjct: 541 YERLVNA-----ILDFLPKIEENLICSKYTDLL 568
Score = 47.2 bits (111), Expect = 3e-05
Identities = 43/291 (14%), Positives = 87/291 (29%), Gaps = 75/291 (25%)
Query: 639 NILT----EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDW------NEI 688
+IL+ + ++ ++ + +L + Q F I + E
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQ 102
Query: 689 RNTA--TEILAELAEETQR-VQVTKRTRVPLKE--TKGRNAL----------------FG 727
R + T + E + QV + V + K R AL G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 728 SSLLLANSPMSPKIMNGSFAAVF-------DADESIM---NGWTHGIAQIQCDSNDSP-- 775
+ + + +S K+ +F ++ E+++ + I +D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 776 ------SMRRRIRGILMSGKQF--SL-------DSR----MDLISGDNTRTHTTPTSDNS 816
S++ +R +L S K + L +++ +L + + T T
Sbjct: 223 IKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNL----SCKILLT-TRFKQ 276
Query: 817 DKDKLEEYAEAELSQGQEKTELTNGDPADSQP-YAK-TGVKT-DLKTEANK 864
D L +S LT P + + K + DL E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLT 324
Score = 44.5 bits (104), Expect = 2e-04
Identities = 62/425 (14%), Positives = 120/425 (28%), Gaps = 126/425 (29%)
Query: 537 IRNFGIKGLQKHIREIFSG------LALP-----AFLVVDSYCCLGTAMIVKGLGFYKMK 585
+ NF K +Q + I S + + + M+ K F +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEV 86
Query: 586 LQTNFPNFILSYF------PKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGEN 639
L+ N+ F++S P + ++ + L + F A + V RL
Sbjct: 87 LRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYN----VSRLQPYL 138
Query: 640 ILTEKLLKRLNSKGR--LH----CVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRN--T 691
L + LL+ L + + + + + I W ++N +
Sbjct: 139 KLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIF--WLNLKNCNS 194
Query: 692 ATEILAEL--------AEETQRVQVTKRTRVPLKETKGR-NALFGS-----SLL-LANSP 736
+L L T R + ++ + + L S LL L N
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-- 252
Query: 737 MSPKIMNGSFAAVFDADESIMNGWTHGIAQIQCDSNDSPSMRRRIRGILMSGKQFSLDSR 796
+ N F+ + C + IL++ + +
Sbjct: 253 ----VQNAKAWNAFN---------------LSC--------K-----ILLTTRFKQV--- 277
Query: 797 MDLISGDNTRTHTTPTSDNSDKDKLEEYAEAELSQ--GQEKTEL----TNGDP------- 843
D +S T TH + D+ + ++ L + +L +P
Sbjct: 278 TDFLSA-ATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 844 -------ADSQPYAKTGVKTDLKTEANKDLRKIENKEPHSSETKTVLKT----EESLSIP 892
A + V D T + + EP +E + + S IP
Sbjct: 335 ESIRDGLATWDNWKH--VNCDKLTTIIE--SSLNVLEP--AEYRKMFDRLSVFPPSAHIP 388
Query: 893 IIDVL 897
+L
Sbjct: 389 -TILL 392
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 53.5 bits (129), Expect = 2e-07
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 22/185 (11%)
Query: 168 PEK---WDTIMGDIEKVIMPGITHWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWA 224
EK I+ +++K ++ + ++ + ++ +
Sbjct: 6 QEKGVSEKEILEELKKYRSLD-LKYEDGNIFGSMC--SNVLPITRKIVDIFLETNLGDPG 62
Query: 225 SSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIR 284
LE + LG ++ + G + + +E+ L+ L +
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKD----------AYGHIVSGGTEANLMALRCIKNIWRE 112
Query: 285 KYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEA 344
K ++ + EH +I AH S EK + + Y + ++ + +A
Sbjct: 113 KRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDA 166
Query: 345 IERDK 349
+E
Sbjct: 167 VEDYD 171
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 49.7 bits (118), Expect = 3e-06
Identities = 31/334 (9%), Positives = 81/334 (24%), Gaps = 106/334 (31%)
Query: 226 SPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRK 285
+ + + +T L +T S +CL A R +
Sbjct: 125 ASGASIMYALTNKILESFFKQLGLN------VHAIATPISTGM-SISLCLSAARKKYGSN 177
Query: 286 YQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL---IGLVNMRYIESDDKLSLRGDKLI 342
+H S KA + + + + D++ + + +
Sbjct: 178 V-----------------VIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIE 220
Query: 343 EAIERDKKKHLIPFFIFSGLALPAFLVVDSYCCLGTAMI--VKGLGFYKMKLQTNFPNFI 400
AI+++ + P V+ + + +
Sbjct: 221 NAIKKEIELGNRP------------CVLSTLTFFPPRNSDDIVEIA-------------- 254
Query: 401 LSYFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGR 460
++ + ++ + + + I +L LK+ K R
Sbjct: 255 ----------KICENYDIPHIINGAYAIQNNYYLE---------------KLKKAF-KYR 288
Query: 461 LHCVPASLRIQGLGRAQNFTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHW 520
+ V +S T + L+ ++ + + G A
Sbjct: 289 VDAVVSSSDKNL------LTPIGGGLVYSTDAEFIK--------EISLSYPGRA------ 328
Query: 521 QIPLSKRFRALKLWFVIRNFGIKGLQKHIREIFS 554
+ + + G K + ++ +
Sbjct: 329 -----SATPVVNTLVSLLSMGSKNYLELVKNQKN 357
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 48.9 bits (116), Expect = 6e-06
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286
P TEL+ +N + + P E T V GV +SE+ ++ LA + + K
Sbjct: 91 PVTTELQNRCVNMIAHLFNAPLEEAETAV-----GVGTVGSSEAIMLAGLAFKRKWQNKR 145
Query: 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAI 345
+ ++ I EK V ++ ++ + + ++ +
Sbjct: 146 KAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMV 199
Query: 346 ERD 348
+ +
Sbjct: 200 DEN 202
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 36.5 bits (84), Expect = 0.038
Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 13/123 (10%)
Query: 227 PACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKY 286
P +++ +N + + P + G +SE+ ++ +A + ++
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAP-----KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131
Query: 287 QQSHPELEHAEINSRLVAYCSDQAHSSVEKAGLIGLVNMRYIESD-DKLSLRGDKLIEAI 345
+ + + + K V +R I +L + ++IEA
Sbjct: 132 EAAGKPTDKPNL-------VCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEAC 184
Query: 346 ERD 348
+ +
Sbjct: 185 DEN 187
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.53
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 17/40 (42%)
Query: 281 EAIRKYQQSHPELEHAEINSRLVAYCSDQA-----HSSVE 315
+A++K L+ + L Y D A +++E
Sbjct: 20 QALKK-------LQ-----ASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.6
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 449 EK-LLKRLNSKGRLHC---VPASLRIQG 472
EK LK+L + +L+ PA L I+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA-LAIKA 44
Score = 30.3 bits (67), Expect = 1.6
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 643 EK-LLKRLNSKGRLHC---VPASLRIQG 666
EK LK+L + +L+ PA L I+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA-LAIKA 44
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 29.3 bits (66), Expect = 2.8
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 417 EALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 459
+ +++ D + A G+V + + +++ +G
Sbjct: 93 DCVLVDDSILNVRGAVEAGLVGVYYQQFDRAVVEIVGLFGLEG 135
Score = 29.3 bits (66), Expect = 2.8
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 611 EALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKG 653
+ +++ D + A G+V + + +++ +G
Sbjct: 93 DCVLVDDSILNVRGAVEAGLVGVYYQQFDRAVVEIVGLFGLEG 135
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 28.5 bits (63), Expect = 5.1
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 673 FTRTTNDDITRDWNEIRNTATEILAELAEETQRVQ 707
+T T I W +++ + L EE + Q
Sbjct: 95 YTTVTPQIINSKWEKVQQLVPKRDHALLEEQSKQQ 129
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 29.5 bits (65), Expect = 5.6
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
+++ D + +LE +R R Y ES + K D I+ D + +
Sbjct: 555 AEDIRDLVVTFLEGLRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNS 614
Query: 188 HWQSPYMHA-----YFPALNSYP 205
W + FP Y
Sbjct: 615 GWANGINERTKQRGDFPTDCVYV 637
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 29.2 bits (66), Expect = 8.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 668 GRAQNFTRTTNDDITRDW--NEIRNTATEILAELAEETQ 704
R ++ DI D+ N + + L LA+ET
Sbjct: 61 ERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETD 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,252,297
Number of extensions: 878439
Number of successful extensions: 1849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1803
Number of HSP's successfully gapped: 55
Length of query: 943
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 840
Effective length of database: 3,825,930
Effective search space: 3213781200
Effective search space used: 3213781200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)