RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11047
(943 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 237 bits (605), Expect = 1e-69
Identities = 138/261 (52%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 128 GKEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGIT 187
GKEMVDY+ADYLE I R+VYPDV+PGYLR L+P +AP EP+ ++ I+ D+EK+IMPG+T
Sbjct: 10 GKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT 69
Query: 188 HWQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLP 247
HW SPY AYFP +SYP++L DML AI C+GF+WA+SPACTELE + M+WLGKM+ LP
Sbjct: 70 HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLP 129
Query: 248 EEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCS 307
E FL + GGV+Q +ASE+TL+ LLA RT+ +R+ Q + P L + +LVAY S
Sbjct: 130 EAFLAGEAGEG-GGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 308 DQAHSSVEKAGLIGLVNMRYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSGLALPAF 367
DQAHSSVE+AGLIG V ++ I SD K ++R L EA+ERDK LIPFF+ + L +
Sbjct: 189 DQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSC 248
Query: 368 LVVDSYCCLGTAMIVKGLGFY 388
D+ +G + + +
Sbjct: 249 CSFDNLLEVGPICHEEDIWLH 269
Score = 101 bits (253), Expect = 3e-23
Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 56/223 (25%)
Query: 479 FTIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAI--DYMHWQIPLSKRFRALKLWFV 536
S + VK L F ++P+YL+H + G + DY HWQ+PL +RFR+LK+WFV
Sbjct: 306 LVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV 365
Query: 537 IRNFGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKMKLQTNFPNFILS 596
R +G+KGLQ +IR
Sbjct: 366 FRMYGVKGLQAYIR---------------------------------------------- 379
Query: 597 YFPKFQSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLH 656
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H
Sbjct: 380 -----KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIH 434
Query: 657 CVPASLRIQGLGRAQ--NFTRTTNDDITRDWNEIRNTATEILA 697
VP LR Q + R + + + + W IR A E+LA
Sbjct: 435 LVPCRLRGQFVLRFAICSR-KVESGHVRLAWEHIRGLAAELLA 476
Score = 65.6 bits (159), Expect = 1e-11
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 408 QSVRLAQKFEALVLGDPRFEIPAARHLGMVVIRLLGENILTEKLLKRLNSKGRLHCVPAS 467
+ V+L+ +FEA VL DPRFE+ A LG+V RL G + L E LL+R+NS ++H VP
Sbjct: 380 KHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCR 439
Query: 468 LR 469
LR
Sbjct: 440 LR 441
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 97.6 bits (242), Expect = 7e-22
Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 24/223 (10%)
Query: 129 KEMVDYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVIMPGITH 188
K++ D ++ L+ R + P + + I ++ + G
Sbjct: 2 KQVTDLRSELLD---SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDEL---YLDGNAR 55
Query: 189 WQSPYMHAYFPALNSYPSLLGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPE 248
A F + ++ +IN P +++ +N + + P
Sbjct: 56 QN----LATF-CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPA 110
Query: 249 EFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSD 308
+ G +SE+ ++ +A + ++ E A +
Sbjct: 111 PK-----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRM-------EAAGKPTDKPNLVCG 158
Query: 309 QAHSSVEKAGLIGLVNMRYIESDDK-LSLRGDKLIEAIERDKK 350
K V +R I L + ++IEA + +
Sbjct: 159 PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTI 201
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 40.7 bits (94), Expect = 8e-04
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 27/156 (17%)
Query: 209 GDMLSDAINCLGFTWASSPACTELEIITMNWLGKMIGLPEEFLHTKVDSPGGGVLQTTAS 268
G S I+ + A S ++ + + K+ G+ V+
Sbjct: 72 GIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHS--------VASCFVVPMATG 123
Query: 269 ESTLICLLAGRTEAIRKYQQSHPELEHAEINSRLVAYCSDQAHSSVEKAGL---IGLVNM 325
S +C L R + + S K+ + V +
Sbjct: 124 MSLTLCFLTLRHKRPK----------------AKYIIWPRIDQKSCFKSMVTAGFEPVVI 167
Query: 326 RYIESDDKLSLRGDKLIEAIERDKKKHLIPFFIFSG 361
+ D+L + I+ +H++ +
Sbjct: 168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 29.3 bits (64), Expect = 1.7
Identities = 21/188 (11%), Positives = 46/188 (24%), Gaps = 21/188 (11%)
Query: 480 TIVPSSLLRVKNSGALHRTFNVEPLYLRHENSGLAIDYMHWQIPLSKRFRALKLWFVIRN 539
IV RV + + + L + +I AL +
Sbjct: 10 VIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALC-HEMALP 68
Query: 540 FGIKGLQKHIREIFSGLALPAFLVVDSYCCLGTAMIVKGLGFYKM---------KLQTNF 590
+ + +F L ++ G ++V +++
Sbjct: 69 LSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAA 128
Query: 591 PNFILSYFPKFQSVRLAQKF-----------EALVLGDPRFEIPAARHLGMVVIRLLGEN 639
+ LS + + + D I A LG+ I + +
Sbjct: 129 DHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKT 188
Query: 640 ILTEKLLK 647
+ + K
Sbjct: 189 TIPDYFAK 196
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
maritima [TaxId: 2336]}
Length = 230
Score = 28.9 bits (63), Expect = 2.6
Identities = 23/199 (11%), Positives = 51/199 (25%), Gaps = 23/199 (11%)
Query: 134 YIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIM--GDIEKVIMPGITHWQS 191
+ D R++ D YL + E E++ ++ G +
Sbjct: 19 MMEDIF---REKNWSFD----YLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK 71
Query: 192 PYMHAYFPALNSYPSLLGDMLSD-----AINCLGFTWASSPACTELEIITMNWLGKMIGL 246
L LG L + + + + ++
Sbjct: 72 YEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREF 131
Query: 247 PEEF-----LHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQQSHPELEHAEINSR 301
P+ D P T+ + + G+ + Q H E+ +
Sbjct: 132 PDRLRVFQWHGDTFDLPRRATRVFTSEKYENQGFVYGKAVGL----QFHIEVGARTMKRW 187
Query: 302 LVAYCSDQAHSSVEKAGLI 320
+ AY + ++ L+
Sbjct: 188 IEAYKDELEKKKIDPRLLL 206
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 27.5 bits (61), Expect = 3.4
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 643 EKLLKRLNSKGRLHCVPASLRIQGLGRAQNFTRTTNDDITRDWNEIRNTATEILAELAEE 702
E L +K R+ PA + +G DI W + L E
Sbjct: 71 EINFNTLQTKLRISNRPAFMPSEGK---------MVSDIAGAWQRLEQAEKGYEEWLLNE 121
Query: 703 TQRV 706
+R+
Sbjct: 122 IRRL 125
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore
domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia
coli [TaxId: 562]}
Length = 97
Score = 26.4 bits (58), Expect = 5.1
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 680 DITRDWNEIRNTATEILAELAEETQRVQVTKRTR 713
D +++N + L +E Q+ V+
Sbjct: 62 DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKS 95
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 487
Score = 27.9 bits (61), Expect = 6.3
Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 8/163 (4%)
Query: 133 DYIADYLENIRDRRVYPDVKPGYLRSLVPESAPVEPEKWDTIMGDIEKVI-------MPG 185
+ +Y+ + P + P + +K M
Sbjct: 270 KLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKPCEVGPLARMWV 329
Query: 186 ITHWQSPYMHAYFPALNSYPSL-LGDMLSDAINCLGFTWASSPACTELEIITMNWLGKMI 244
SP L + D+ A + +G + + WL ++
Sbjct: 330 QNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQ 389
Query: 245 GLPEEFLHTKVDSPGGGVLQTTASESTLICLLAGRTEAIRKYQ 287
E ++ +++ G T A L+ L + + I YQ
Sbjct: 390 PGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIKDKKIENYQ 432
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,460,395
Number of extensions: 165414
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 11
Length of query: 943
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 849
Effective length of database: 1,116,976
Effective search space: 948312624
Effective search space used: 948312624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)