Query psy11049
Match_columns 237
No_of_seqs 179 out of 1029
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 16:48:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0956|consensus 100.0 2.6E-58 5.7E-63 435.0 7.5 197 1-235 1-197 (900)
2 KOG0954|consensus 100.0 1.5E-40 3.2E-45 316.9 3.9 168 40-220 271-440 (893)
3 COG5141 PHD zinc finger-contai 100.0 1.4E-39 3E-44 299.2 4.2 173 37-220 190-366 (669)
4 KOG0955|consensus 100.0 1.6E-37 3.4E-42 310.8 7.7 172 38-219 217-396 (1051)
5 KOG0957|consensus 100.0 3E-34 6.5E-39 264.6 3.0 173 42-222 121-304 (707)
6 PF13832 zf-HC5HC2H_2: PHD-zin 100.0 1.1E-29 2.5E-34 196.4 6.1 110 98-216 1-110 (110)
7 PF13771 zf-HC5HC2H: PHD-like 99.7 6.9E-19 1.5E-23 131.2 3.0 87 120-217 1-90 (90)
8 PF13831 PHD_2: PHD-finger; PD 99.3 4.5E-13 9.8E-18 83.7 0.2 35 54-90 1-36 (36)
9 KOG1080|consensus 99.2 1.4E-11 3E-16 124.9 6.2 144 37-198 570-715 (1005)
10 PF00628 PHD: PHD-finger; Int 98.1 1.4E-06 3.1E-11 57.8 1.4 45 42-90 1-49 (51)
11 smart00249 PHD PHD zinc finger 98.0 5.7E-06 1.2E-10 52.9 3.2 44 42-89 1-47 (47)
12 KOG1084|consensus 97.5 5.3E-05 1.1E-09 70.5 1.8 100 97-217 221-321 (375)
13 KOG1512|consensus 97.3 0.00011 2.4E-09 65.3 1.5 45 42-90 316-361 (381)
14 KOG1244|consensus 97.0 0.00036 7.7E-09 61.7 1.8 46 42-91 283-330 (336)
15 KOG4323|consensus 96.9 0.0016 3.4E-08 61.9 5.2 138 42-217 85-222 (464)
16 KOG4323|consensus 96.7 0.00083 1.8E-08 63.7 2.2 52 39-92 167-224 (464)
17 PF15446 zf-PHD-like: PHD/FYVE 96.7 0.0016 3.4E-08 53.9 3.2 66 42-109 1-83 (175)
18 KOG1973|consensus 95.8 0.005 1.1E-07 55.1 1.9 40 53-92 228-268 (274)
19 COG5034 TNG2 Chromatin remodel 95.6 0.013 2.7E-07 51.6 3.6 44 45-91 225-269 (271)
20 KOG4299|consensus 95.5 0.0055 1.2E-07 59.7 1.1 48 41-92 254-305 (613)
21 smart00249 PHD PHD zinc finger 95.0 0.018 4E-07 36.2 2.2 33 155-195 2-34 (47)
22 KOG0825|consensus 93.9 0.035 7.7E-07 55.6 2.4 47 41-91 216-265 (1134)
23 PF14446 Prok-RING_1: Prokaryo 92.7 0.085 1.8E-06 35.7 2.0 31 41-74 6-36 (54)
24 PF00628 PHD: PHD-finger; Int 92.0 0.11 2.4E-06 33.9 1.9 33 154-194 1-33 (51)
25 KOG0383|consensus 85.9 0.35 7.6E-06 48.5 1.2 44 41-91 48-93 (696)
26 PF00130 C1_1: Phorbol esters/ 82.9 1.2 2.7E-05 29.1 2.5 35 41-77 12-46 (53)
27 KOG1973|consensus 82.1 0.74 1.6E-05 41.2 1.5 31 152-190 219-250 (274)
28 PF11793 FANCL_C: FANCL C-term 81.4 0.75 1.6E-05 32.6 1.1 51 41-91 3-63 (70)
29 cd04718 BAH_plant_2 BAH, or Br 80.7 1 2.2E-05 36.7 1.7 24 69-92 2-27 (148)
30 cd00029 C1 Protein kinase C co 79.8 0.96 2.1E-05 28.9 1.1 34 41-76 12-45 (50)
31 PF07649 C1_3: C1-like domain; 78.9 0.9 2E-05 26.6 0.7 28 42-73 2-29 (30)
32 PF08746 zf-RING-like: RING-li 75.6 1.5 3.3E-05 28.1 1.1 29 155-191 1-29 (43)
33 PF00641 zf-RanBP: Zn-finger i 75.5 2.1 4.5E-05 25.0 1.6 25 81-105 2-26 (30)
34 KOG0957|consensus 75.0 1.6 3.5E-05 42.2 1.5 57 29-89 533-595 (707)
35 KOG1044|consensus 73.8 1.1 2.4E-05 43.8 0.2 100 83-195 113-224 (670)
36 PF03107 C1_2: C1 domain; Int 72.7 4.1 8.8E-05 23.9 2.4 27 42-73 2-29 (30)
37 KOG4443|consensus 70.6 2.2 4.8E-05 42.4 1.4 47 43-91 68-117 (694)
38 KOG1245|consensus 70.3 0.98 2.1E-05 48.9 -1.2 48 41-92 1109-1158(1404)
39 smart00109 C1 Protein kinase C 70.0 1.5 3.2E-05 27.7 0.1 33 41-76 12-44 (49)
40 smart00547 ZnF_RBZ Zinc finger 69.9 2.6 5.7E-05 23.5 1.1 24 82-105 1-24 (26)
41 PF02318 FYVE_2: FYVE-type zin 68.7 5.9 0.00013 30.7 3.2 48 41-91 55-102 (118)
42 KOG1512|consensus 64.9 3.6 7.7E-05 37.2 1.4 77 41-119 259-355 (381)
43 PF12906 RINGv: RING-variant d 61.7 1.8 4E-05 28.2 -0.8 30 43-75 1-33 (47)
44 KOG1084|consensus 59.0 2.9 6.2E-05 39.2 -0.3 137 84-232 99-264 (375)
45 PF13832 zf-HC5HC2H_2: PHD-zin 58.9 7.2 0.00016 29.4 2.0 34 39-76 54-87 (110)
46 COG5034 TNG2 Chromatin remodel 58.2 5.7 0.00012 35.3 1.5 32 152-191 221-253 (271)
47 COG5194 APC11 Component of SCF 58.2 3.1 6.7E-05 30.5 -0.1 33 153-192 21-65 (88)
48 PF13639 zf-RING_2: Ring finge 55.0 4.5 9.8E-05 25.4 0.2 31 41-75 1-31 (44)
49 KOG1244|consensus 53.7 7 0.00015 35.1 1.3 74 41-124 225-311 (336)
50 smart00744 RINGv The RING-vari 52.6 5 0.00011 26.3 0.2 30 42-75 1-34 (49)
51 PF14446 Prok-RING_1: Prokaryo 52.6 14 0.0003 25.1 2.3 39 152-197 5-43 (54)
52 PHA02862 5L protein; Provision 52.5 4.7 0.0001 32.8 0.0 34 39-75 1-34 (156)
53 KOG0954|consensus 44.3 23 0.0005 36.0 3.4 35 153-197 324-359 (893)
54 KOG0955|consensus 43.4 31 0.00067 36.6 4.3 113 3-127 217-363 (1051)
55 PF13901 DUF4206: Domain of un 42.7 22 0.00047 30.3 2.6 41 42-91 154-197 (202)
56 PF10367 Vps39_2: Vacuolar sor 41.6 28 0.00061 25.5 2.9 29 41-74 79-107 (109)
57 KOG4477|consensus 41.6 14 0.00031 31.3 1.3 33 79-111 20-52 (228)
58 PF10080 DUF2318: Predicted me 39.1 18 0.00039 27.7 1.4 35 39-75 34-68 (102)
59 PLN02638 cellulose synthase A 39.1 28 0.0006 37.0 3.1 48 41-91 18-67 (1079)
60 PF12861 zf-Apc11: Anaphase-pr 38.5 16 0.00035 27.1 1.0 14 179-192 50-63 (85)
61 PHA02825 LAP/PHD finger-like p 36.5 13 0.00029 30.7 0.3 47 38-90 6-55 (162)
62 KOG4299|consensus 36.0 12 0.00027 37.0 0.1 45 40-91 47-94 (613)
63 PLN02400 cellulose synthase 34.1 43 0.00093 35.6 3.6 48 41-91 37-86 (1085)
64 KOG1473|consensus 33.4 45 0.00098 35.7 3.6 65 39-110 343-409 (1414)
65 PLN02436 cellulose synthase A 32.8 40 0.00087 35.8 3.1 48 41-91 37-86 (1094)
66 COG5141 PHD zinc finger-contai 32.1 31 0.00068 33.6 2.1 112 3-127 191-336 (669)
67 PF14569 zf-UDP: Zinc-binding 30.4 8.3 0.00018 28.1 -1.6 48 41-91 10-59 (80)
68 PF13771 zf-HC5HC2H: PHD-like 28.2 58 0.0013 23.3 2.6 35 39-77 35-69 (90)
69 PLN02915 cellulose synthase A 27.0 52 0.0011 34.9 2.8 49 40-91 15-65 (1044)
70 KOG1844|consensus 27.0 42 0.00091 32.2 2.1 44 45-91 90-134 (508)
71 PF12773 DZR: Double zinc ribb 26.4 46 0.00099 21.3 1.6 39 56-103 11-49 (50)
72 PF07282 OrfB_Zn_ribbon: Putat 24.9 85 0.0018 21.4 2.8 34 38-73 26-60 (69)
73 KOG4443|consensus 24.6 32 0.00069 34.5 0.7 48 42-91 20-70 (694)
74 PLN02189 cellulose synthase 24.2 52 0.0011 34.9 2.2 48 41-91 35-84 (1040)
75 PF05502 Dynactin_p62: Dynacti 23.0 1E+02 0.0022 29.9 3.9 54 55-113 3-65 (483)
76 KOG3268|consensus 22.9 29 0.00063 29.4 0.1 37 39-75 164-200 (234)
77 PF14768 RPA_interact_C: Repli 20.7 91 0.002 22.5 2.3 28 42-72 1-28 (82)
78 PF11781 RRN7: RNA polymerase 20.4 57 0.0012 20.0 1.0 26 41-68 9-34 (36)
79 KOG0383|consensus 20.3 43 0.00094 34.0 0.7 56 152-222 47-102 (696)
80 COG4393 Predicted membrane pro 20.1 49 0.0011 30.7 1.0 31 40-72 334-364 (405)
No 1
>KOG0956|consensus
Probab=100.00 E-value=2.6e-58 Score=435.02 Aligned_cols=197 Identities=73% Similarity=1.441 Sum_probs=186.9
Q ss_pred CcccccccccccCCCCCCCCCceecCCCCcccccccccccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCC
Q psy11049 1 MKEMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP 80 (237)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p 80 (237)
|||||||||||+||+||+||||+||||| +|.|+|||.||||..+|
T Consensus 1 MKEMVGGCCVCSDErGWaeNPLVYCDG~-----------------------------------nCsVAVHQaCYGIvqVP 45 (900)
T KOG0956|consen 1 MKEMVGGCCVCSDERGWAENPLVYCDGH-----------------------------------NCSVAVHQACYGIVQVP 45 (900)
T ss_pred CcccccceeeecCcCCCccCceeeecCC-----------------------------------CceeeeehhcceeEecC
Confidence 9999999999999999999999877754 46689999999999999
Q ss_pred CCeEeeccccccccccccccccCCCCCCCceeecCCchhhhhcccccCCccccCcccCCCCcccccCCCcccceeeecCc
Q psy11049 81 VGSWFCRKCESQEKSTKVRCELCPSKDGALKRTDNNGWAHVVCALYIPEVRFGNVTSMEPILLEEIPPERFNKVCYICEE 160 (237)
Q Consensus 81 ~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk~t~~~~WvHv~Calw~pev~f~~~~~~~~v~i~~i~~~r~~~~C~~C~~ 160 (237)
+++|||+.|+..++.....|.|||.++||||+|+++.|+||+|||++|||+|.|+..||||.++.|+.+||++.|+||..
T Consensus 46 tGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E 125 (900)
T KOG0956|consen 46 TGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNE 125 (900)
T ss_pred CCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecc
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhhhcCCCcccCCCCC
Q psy11049 161 NGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVRKKGANIKPIPRDW 235 (237)
Q Consensus 161 ~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~~~~~~~k~~~~~~ 235 (237)
.| +.++...|+|++|...+|.++||++||+.+|++.||.+++.+|++|.-||+.|..|+ |+++++|.++.|+
T Consensus 126 ~G-rpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl--kk~~~~k~ipsy~ 197 (900)
T KOG0956|consen 126 EG-RPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL--KKSPAIKVIPSYK 197 (900)
T ss_pred cC-CccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh--hcCCCcccCCCCc
Confidence 87 778899999999999999999999999999999999999999999999999999876 6899999998775
No 2
>KOG0954|consensus
Probab=100.00 E-value=1.5e-40 Score=316.87 Aligned_cols=168 Identities=45% Similarity=0.907 Sum_probs=157.3
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccccccccccccccCCCCCCCceeecCC-ch
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCELCPSKDGALKRTDNN-GW 118 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk~t~~~-~W 118 (237)
+..|+||..+++++.|+||||| +|++.|||.||||..+|+++|+|..|... ..+.|+|||++||+||.+..+ .|
T Consensus 271 dviCDvCrspD~e~~neMVfCd--~Cn~cVHqaCyGIle~p~gpWlCr~Calg---~~ppCvLCPkkGGamK~~~sgT~w 345 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEANEMVFCD--KCNICVHQACYGILEVPEGPWLCRTCALG---IEPPCVLCPKKGGAMKPTKSGTKW 345 (893)
T ss_pred cceeceecCCCccccceeEEec--cchhHHHHhhhceeecCCCCeeehhcccc---CCCCeeeccccCCcccccCCCCee
Confidence 3579999999999999999999 89999999999999999999999999985 689999999999999999765 89
Q ss_pred hhhhcccccCCccccCcccCCCCc-ccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeE
Q psy11049 119 AHVVCALYIPEVRFGNVTSMEPIL-LEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLC 197 (237)
Q Consensus 119 vHv~Calw~pev~f~~~~~~~~v~-i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~ 197 (237)
+|++||||+|||+|.++..|+||. ++.|+..|+.+.|.+|+.+. |+||||+...|.++||++||+.+|..+
T Consensus 346 AHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~--------GACIqCs~k~C~t~fHv~CA~~aG~~~ 417 (893)
T KOG0954|consen 346 AHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKS--------GACIQCSNKTCRTAFHVTCAFEAGLEM 417 (893)
T ss_pred eEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccC--------cceEEecccchhhhccchhhhhcCCee
Confidence 999999999999999999999997 89999999999999999885 999999999999999999999999998
Q ss_pred EecCcccCCcceEecCCccchhh
Q psy11049 198 EEAGNYLDNVKYCGYCSHHYSKL 220 (237)
Q Consensus 198 ~~~~~~~~~~~~~~~C~~H~~~~ 220 (237)
.....+.+.+.+..||.+|...+
T Consensus 418 ~~~~~~~D~v~~~s~c~khs~~~ 440 (893)
T KOG0954|consen 418 KTILKENDEVKFKSYCSKHSDHR 440 (893)
T ss_pred eeeeccCCchhheeecccccccc
Confidence 87666667788999999998765
No 3
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=299.22 Aligned_cols=173 Identities=36% Similarity=0.824 Sum_probs=154.6
Q ss_pred ccccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccccccccccccccCCCCCCCceeecCC
Q psy11049 37 ELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCELCPSKDGALKRTDNN 116 (237)
Q Consensus 37 ~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk~t~~~ 116 (237)
.++++.|.+|.+.+.++.|.||+||| |+++|||+||||..+|+|.|+|++|...+ ....-|.+||.++||+|.|.+|
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdg--C~i~VHq~CYGI~f~peG~WlCrkCi~~~-~~i~~C~fCps~dGaFkqT~dg 266 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDG--CEICVHQSCYGIQFLPEGFWLCRKCIYGE-YQIRCCSFCPSSDGAFKQTSDG 266 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecC--cchhhhhhcccceecCcchhhhhhhcccc-cceeEEEeccCCCCceeeccCC
Confidence 46999999999999999999999995 99999999999999999999999999863 4566799999999999999999
Q ss_pred chhhhhcccccCCccccCcccCCCCc-ccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCe
Q psy11049 117 GWAHVVCALYIPEVRFGNVTSMEPIL-LEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGL 195 (237)
Q Consensus 117 ~WvHv~Calw~pev~f~~~~~~~~v~-i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~ 195 (237)
+|+|++||+|+|+++|.+...++||+ |++|+..|+++.|.+|+..+ |+||||++.+|.++||++||+++|+
T Consensus 267 rW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~--------GtcIqCs~~nC~~aYHVtCArrag~ 338 (669)
T COG5141 267 RWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFG--------GTCIQCSYFNCTRAYHVTCARRAGY 338 (669)
T ss_pred chHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccC--------cceeeecccchhhhhhhhhhhhcch
Confidence 99999999999999999999999997 88999999999999999997 9999999999999999999999998
Q ss_pred eEEe-c--CcccCCcceEecCCccchhh
Q psy11049 196 LCEE-A--GNYLDNVKYCGYCSHHYSKL 220 (237)
Q Consensus 196 ~~~~-~--~~~~~~~~~~~~C~~H~~~~ 220 (237)
.+.. . .....-+....||.+|.+..
T Consensus 339 f~~~~~s~n~~s~~id~e~~c~kh~p~g 366 (669)
T COG5141 339 FDLNIYSHNGISYCIDHEPLCRKHYPLG 366 (669)
T ss_pred hhhhhhcccccceeecchhhhcCCCCcc
Confidence 7652 1 11112234567999999864
No 4
>KOG0955|consensus
Probab=100.00 E-value=1.6e-37 Score=310.79 Aligned_cols=172 Identities=48% Similarity=1.044 Sum_probs=155.8
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccccccccccccccCCCCCCCceeecCCc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCELCPSKDGALKRTDNNG 117 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk~t~~~~ 117 (237)
+++.+|+||.+.+..+.|.||+|| .|+++|||.|||+..+|++.|+|++|.... .....|.|||..+||||+|++|+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~-~~~v~c~~cp~~~gAFkqt~dgr 293 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQSP-QRPVRCLLCPSKGGAFKQTDDGR 293 (1051)
T ss_pred CCCccceeecccccCCCceEEEcC--CCcchhhhhccCCCCCCCCcEeehhhccCc-CcccceEeccCCCCcceeccCCc
Confidence 567899999999999999999999 599999999999999999999999999853 45589999999999999999999
Q ss_pred hhhhhcccccCCccccCcccCCCCc-ccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCee
Q psy11049 118 WAHVVCALYIPEVRFGNVTSMEPIL-LEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLL 196 (237)
Q Consensus 118 WvHv~Calw~pev~f~~~~~~~~v~-i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~ 196 (237)
|+|++||+|.|+|.|.+...+++|+ ++.|+..|+++.|++|++++ .|+||||+..+|.++||++||+++|+.
T Consensus 294 w~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~~agl~ 366 (1051)
T KOG0955|consen 294 WAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKG-------LGACIQCSKANCYTAFHVTCARRAGLY 366 (1051)
T ss_pred eeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCC-------CCcceecchhhhhhhhhhhhHhhcCce
Confidence 9999999999999999999999997 88999999999999999985 799999999999999999999999999
Q ss_pred EEecC-ccc------CCcceEecCCccchh
Q psy11049 197 CEEAG-NYL------DNVKYCGYCSHHYSK 219 (237)
Q Consensus 197 ~~~~~-~~~------~~~~~~~~C~~H~~~ 219 (237)
+.... .+. .-+.+.+||++|.+.
T Consensus 367 m~~~~~~~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 367 MKSNTVKELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred EeecccccccccccccccceeeeccCCCCc
Confidence 87321 111 125789999999998
No 5
>KOG0957|consensus
Probab=100.00 E-value=3e-34 Score=264.62 Aligned_cols=173 Identities=35% Similarity=0.834 Sum_probs=152.4
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccc---cCC-------CCeEeeccccccccccccccccCCCCCCCce
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV---TVP-------VGSWFCRKCESQEKSTKVRCELCPSKDGALK 111 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~---~~p-------~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk 111 (237)
.|.||....+.+.|+||+|| +|+|.||..|||+. .+| ..+|||+.|..+ ...+.|.|||.++|++|
T Consensus 121 iCcVClg~rs~da~ei~qCd--~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G--vs~P~CElCPn~~GifK 196 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCD--KCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG--VSLPHCELCPNRFGIFK 196 (707)
T ss_pred EEEEeecCccccccceeecc--ccCceecccccccccccccCCCCccCCCCchhhhhHhcC--CCCCccccCCCcCCccc
Confidence 69999999999999999999 89999999999986 233 268999999987 34599999999999999
Q ss_pred eecCCchhhhhcccccCCccccCcccCCCCcccccCCCcc-cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhh
Q psy11049 112 RTDNNGWAHVVCALYIPEVRFGNVTSMEPILLEEIPPERF-NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCA 190 (237)
Q Consensus 112 ~t~~~~WvHv~Calw~pev~f~~~~~~~~v~i~~i~~~r~-~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA 190 (237)
.|+-|+|||++|||++|+|.|.+...+.+|.+..+....| ...|++|..+.+ ...|.||.|..+.|.++||++||
T Consensus 197 etDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~f----ARtGvci~CdaGMCk~YfHVTCA 272 (707)
T KOG0957|consen 197 ETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIF----ARTGVCIRCDAGMCKEYFHVTCA 272 (707)
T ss_pred ccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhh----hhcceeeeccchhhhhhhhhhHH
Confidence 9999999999999999999999999999998776655444 579999998753 45799999999999999999999
Q ss_pred hcCCeeEEecCcccCCcceEecCCccchhhhh
Q psy11049 191 QTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVR 222 (237)
Q Consensus 191 ~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~ 222 (237)
+++|++++..+.....++|.+||++|+.+...
T Consensus 273 Qk~GlLvea~~e~DiAdpfya~CK~Ht~r~~~ 304 (707)
T KOG0957|consen 273 QKLGLLVEATDENDIADPFYAFCKKHTNRDNL 304 (707)
T ss_pred hhhcceeeccccccchhhHHHHHHhhcchhhh
Confidence 99999998876655668899999999988554
No 6
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.96 E-value=1.1e-29 Score=196.45 Aligned_cols=110 Identities=51% Similarity=1.080 Sum_probs=101.4
Q ss_pred cccccCCCCCCCceeecCCchhhhhcccccCCccccCcccCCCCcccccCCCcccceeeecCcCCcCCCcCccceeeecC
Q psy11049 98 VRCELCPSKDGALKRTDNNGWAHVVCALYIPEVRFGNVTSMEPILLEEIPPERFNKVCYICEENGHKASRSKFGACMMCN 177 (237)
Q Consensus 98 ~~C~LC~~~~Galk~t~~~~WvHv~Calw~pev~f~~~~~~~~v~i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~ 177 (237)
..|.||+.++||||+|.++.|||++||+|+|++.|.+...+++++++++++++++++|.+|++++ |++|+|+
T Consensus 1 ~~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~--------G~~i~C~ 72 (110)
T PF13832_consen 1 ASCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKSG--------GACIKCS 72 (110)
T ss_pred CccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCCC--------ceeEEcC
Confidence 36999999999999999999999999999999999999999999999998888999999999986 9999999
Q ss_pred CCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCcc
Q psy11049 178 KPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHH 216 (237)
Q Consensus 178 ~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H 216 (237)
.++|.++|||+||+.+|+.++..... .+.++.+||++|
T Consensus 73 ~~~C~~~fH~~CA~~~g~~~~~~~~~-~~~~~~~~C~~H 110 (110)
T PF13832_consen 73 HPGCSTAFHPTCARKAGLYFEIENEE-DNVQFIAYCPKH 110 (110)
T ss_pred CCCCCcCCCHHHHHHCCCeEEeeecC-CCceEEEECCCC
Confidence 99999999999999999999876532 257899999999
No 7
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.74 E-value=6.9e-19 Score=131.16 Aligned_cols=87 Identities=38% Similarity=0.723 Sum_probs=73.5
Q ss_pred hhhcccccCCccccCccc--C-CCCcccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCee
Q psy11049 120 HVVCALYIPEVRFGNVTS--M-EPILLEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLL 196 (237)
Q Consensus 120 Hv~Calw~pev~f~~~~~--~-~~v~i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~ 196 (237)
|+.||+|+|+|.+.+... + ...+++++.+.+++++|++|+++. |++|+|..++|.++||++||+.+|..
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~--------Ga~i~C~~~~C~~~fH~~CA~~~~~~ 72 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKG--------GACIGCSHPGCSRSFHVPCARKAGCF 72 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCC--------CeEEEEeCCCCCcEEChHHHccCCeE
Confidence 899999999999987653 2 233466666777889999999985 89999999999999999999999999
Q ss_pred EEecCcccCCcceEecCCccc
Q psy11049 197 CEEAGNYLDNVKYCGYCSHHY 217 (237)
Q Consensus 197 ~~~~~~~~~~~~~~~~C~~H~ 217 (237)
++... ++..+.+||++|+
T Consensus 73 ~~~~~---~~~~~~~~C~~H~ 90 (90)
T PF13771_consen 73 IEFDE---DNGKFRIFCPKHS 90 (90)
T ss_pred EEEcc---CCCceEEEChhcC
Confidence 88763 3457899999996
No 8
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=99.29 E-value=4.5e-13 Score=83.66 Aligned_cols=35 Identities=63% Similarity=1.534 Sum_probs=21.5
Q ss_pred CCCeEEecCCCcCceecccccccccCCCC-eEeecccc
Q psy11049 54 ENPLVYCDGQGCNVAVHQACYGIVTVPVG-SWFCRKCE 90 (237)
Q Consensus 54 ~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~-~W~C~~C~ 90 (237)
.|+||+|+ +|+++||++|||+..+|++ +|+|++|+
T Consensus 1 ~n~ll~C~--~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 1 TNPLLFCD--NCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp -CEEEE-S--SS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CCceEEeC--CCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 48999999 7999999999999998876 79999995
No 9
>KOG1080|consensus
Probab=99.21 E-value=1.4e-11 Score=124.93 Aligned_cols=144 Identities=40% Similarity=0.864 Sum_probs=122.4
Q ss_pred ccccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCC-CeEeeccccccccccccccccCCCCCCCceeecC
Q psy11049 37 ELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV-GSWFCRKCESQEKSTKVRCELCPSKDGALKRTDN 115 (237)
Q Consensus 37 ~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~-~~W~C~~C~~~~~~~~~~C~LC~~~~Galk~t~~ 115 (237)
.+..+.|.+|.+.+.+..|.++.|+ +|...||+.|||....+. ..|+|+.|... .-...|.+|+.++|||++++.
T Consensus 570 ~~~t~~c~~~~~~~~~~~n~~~~~~--~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~--~~~r~~~l~~~~g~al~p~d~ 645 (1005)
T KOG1080|consen 570 KWTTERCAVCRDDEDWEKNVSIICD--RCTRSVHSECYGNLKSYDGTSWVCDSCETL--DIKRSCCLCPVKGGALKPTDE 645 (1005)
T ss_pred CCCcccccccccccccccceeeeec--cccccCCCcccccCCCCCCCcchhhccccc--cCCchhhhccccCcccCCCCc
Confidence 3445789999999999999999999 899999999999987654 57999999964 456889999999999999999
Q ss_pred CchhhhhcccccCCccccCcccCCCCc-ccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCC
Q psy11049 116 NGWAHVVCALYIPEVRFGNVTSMEPIL-LEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQG 194 (237)
Q Consensus 116 ~~WvHv~Calw~pev~f~~~~~~~~v~-i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G 194 (237)
+.|+|+-||.|.|++.+.+...|+|.. +..++.......|.+ . |.+.+|. .|.+.||..||..+|
T Consensus 646 gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~---~---------~~~~~~~--~~~~~~~~~~a~~~~ 711 (1005)
T KOG1080|consen 646 GRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI---H---------GSCRQCC--KCETGSHAMCASRAG 711 (1005)
T ss_pred cchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc---c---------ccccccc--hhhhcceehhhcCcc
Confidence 999999999999999999998888865 555555555555655 2 7888888 699999999999988
Q ss_pred eeEE
Q psy11049 195 LLCE 198 (237)
Q Consensus 195 ~~~~ 198 (237)
...+
T Consensus 712 ~~~~ 715 (1005)
T KOG1080|consen 712 YIME 715 (1005)
T ss_pred Chhh
Confidence 7654
No 10
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.07 E-value=1.4e-06 Score=57.80 Aligned_cols=45 Identities=36% Similarity=0.911 Sum_probs=37.9
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccC----CCCeEeecccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTV----PVGSWFCRKCE 90 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~----p~~~W~C~~C~ 90 (237)
.|.||.. ..+.+.+|+|+ .|+..+|..|+++... +.+.|+|..|+
T Consensus 1 ~C~vC~~--~~~~~~~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCD--SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBS--TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC--cCCCCCeEEcC--CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4889999 44799999999 7999999999998743 34589999986
No 11
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1084|consensus
Probab=97.45 E-value=5.3e-05 Score=70.55 Aligned_cols=100 Identities=21% Similarity=0.376 Sum_probs=70.5
Q ss_pred ccccccCCCCCCCceee-cCCchhhhhcccccCCccccCcccCCCCcccccCCCcccceeeecCcCCcCCCcCccceeee
Q psy11049 97 KVRCELCPSKDGALKRT-DNNGWAHVVCALYIPEVRFGNVTSMEPILLEEIPPERFNKVCYICEENGHKASRSKFGACMM 175 (237)
Q Consensus 97 ~~~C~LC~~~~Galk~t-~~~~WvHv~Calw~pev~f~~~~~~~~v~i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~ 175 (237)
...|++++.. -.+. ....|.|+.|++|.|.+.+.....+.++.-+.+.. . .+.|..|.++ |+.+.
T Consensus 221 e~~~~l~~~~---~~~d~~~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v~r~-~-~~~c~~c~k~---------ga~~~ 286 (375)
T KOG1084|consen 221 EFFCALSPKA---TIPDIGFELWYHRYCALWAPNVHESQGGQLTNVDNAVIRF-P-SLQCILCQKP---------GATLK 286 (375)
T ss_pred hhhhhhcCCC---cCCccchhHHHHHHHHhcCCcceeccCccccCchhhhhcc-c-chhcccccCC---------CCchh
Confidence 3366666533 2333 45689999999999999887765665554222222 2 2789999998 79999
Q ss_pred cCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccc
Q psy11049 176 CNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHY 217 (237)
Q Consensus 176 C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~ 217 (237)
|....|...+|.+|+...-..... ....++|++|.
T Consensus 287 c~~~~~~~~~h~~c~~~~~~~~~~-------~~r~v~~~~h~ 321 (375)
T KOG1084|consen 287 CVQASLLSNAHFPCARAKNGIPLD-------YDRKVSCPRHR 321 (375)
T ss_pred hhhhhhhcccCcccccCcccccch-------hhhhccCCCCC
Confidence 999999999999999754433221 12458899998
No 13
>KOG1512|consensus
Probab=97.27 E-value=0.00011 Score=65.31 Aligned_cols=45 Identities=31% Similarity=0.930 Sum_probs=41.0
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeec-ccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCR-KCE 90 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~-~C~ 90 (237)
.|.||..+. ..+++|||| .|+-.+|..|-|...+|.+.|+|| +|.
T Consensus 316 lC~IC~~P~--~E~E~~FCD--~CDRG~HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 316 LCRICLGPV--IESEHLFCD--VCDRGPHTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred hhhccCCcc--cchheeccc--cccCCCCccccccccccCccchhhhHHH
Confidence 699999987 478999999 899999999999999999999999 344
No 14
>KOG1244|consensus
Probab=96.98 E-value=0.00036 Score=61.71 Aligned_cols=46 Identities=30% Similarity=0.863 Sum_probs=40.4
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccc--cCCCCeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV--TVPVGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~--~~p~~~W~C~~C~~ 91 (237)
.|+||+..+ ++++||||| .|+-.+|.+|...+ +.|++.|-|..|..
T Consensus 283 ~csicgtse--nddqllfcd--dcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 283 YCSICGTSE--NDDQLLFCD--DCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeccccCcC--CCceeEeec--ccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 699999866 689999999 89999999999865 56899999999975
No 15
>KOG4323|consensus
Probab=96.86 E-value=0.0016 Score=61.86 Aligned_cols=138 Identities=21% Similarity=0.311 Sum_probs=88.5
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccccccccccccccCCCCCCCceeecCCchhhh
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCELCPSKDGALKRTDNNGWAHV 121 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk~t~~~~WvHv 121 (237)
.|.||........|.++.|+ +|....||.|--......+.|.+..|..... .+++|++|... -+|
T Consensus 85 ~~nv~~s~~~~p~~e~~~~~--r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~---------~~~g~a~K~g~---~a~- 149 (464)
T KOG4323|consen 85 NPNVLTSETVLPENEKVICG--RCKSGYHQGCNIPRFPSLDIGESTECVFPIF---------SQEGGALKKGR---LAR- 149 (464)
T ss_pred CCcccccccccCchhhhhhh--hhccCcccccCccCcCcCCcccccccccccc---------ccccccccccc---ccc-
Confidence 69999999888899999999 9999999999754443356788888886432 24678887643 344
Q ss_pred hcccccCCccccCcccCCCCcccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecC
Q psy11049 122 VCALYIPEVRFGNVTSMEPILLEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAG 201 (237)
Q Consensus 122 ~Calw~pev~f~~~~~~~~v~i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~ 201 (237)
|.+.+... ..+++.. .+.++.|.||..-+.. .+. .+|+|. +|.++||-.|-+..--..+..+
T Consensus 150 ------~~l~y~~~----~l~wD~~--~~~n~qc~vC~~g~~~---~~N-rmlqC~--~C~~~fHq~Chqp~i~~~l~~D 211 (464)
T KOG4323|consen 150 ------PSLPYPEA----SLDWDSG--HKVNLQCSVCYCGGPG---AGN-RMLQCD--KCRQWYHQACHQPLIKDELAGD 211 (464)
T ss_pred ------ccccCccc----ccccCcc--ccccceeeeeecCCcC---ccc-eeeeec--ccccHHHHHhccCCCCHhhccC
Confidence 44444321 1122221 1235669988854311 222 789999 8999999999875432222221
Q ss_pred cccCCcceEecCCccc
Q psy11049 202 NYLDNVKYCGYCSHHY 217 (237)
Q Consensus 202 ~~~~~~~~~~~C~~H~ 217 (237)
..+..||..=.
T Consensus 212 -----~~~~w~C~~C~ 222 (464)
T KOG4323|consen 212 -----PFYEWFCDVCN 222 (464)
T ss_pred -----ccceEeehhhc
Confidence 23566776444
No 16
>KOG4323|consensus
Probab=96.71 E-value=0.00083 Score=63.69 Aligned_cols=52 Identities=33% Similarity=0.632 Sum_probs=43.4
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceeccccccccc------CCCCeEeecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT------VPVGSWFCRKCESQ 92 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~------~p~~~W~C~~C~~~ 92 (237)
++..|+||........|.||+|+ +|+.-+|+.|---.. .+...|+|+.|...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 34569999998888999999999 699999999986432 24578999999874
No 17
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.67 E-value=0.0016 Score=53.90 Aligned_cols=66 Identities=29% Similarity=0.678 Sum_probs=48.7
Q ss_pred cccccCC-CCCCCCCCeEEecCCCcCceeccccccccc--------CCCCe--Eeeccccccc------cccccccccCC
Q psy11049 42 GCCVCSD-DSGWAENPLVYCDGQGCNVAVHQACYGIVT--------VPVGS--WFCRKCESQE------KSTKVRCELCP 104 (237)
Q Consensus 42 ~C~VC~~-~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--------~p~~~--W~C~~C~~~~------~~~~~~C~LC~ 104 (237)
.|.+|.. .++.+..+||+|.| |..++|+.|.|... +.++. -.|++|.... ......|..|.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQG--Cs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~ 78 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQG--CSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCK 78 (175)
T ss_pred CcccccCCCCCccCCCeEEcCc--cChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccC
Confidence 4899976 35567889999996 99999999999752 33444 5699997532 23467899998
Q ss_pred CCCCC
Q psy11049 105 SKDGA 109 (237)
Q Consensus 105 ~~~Ga 109 (237)
..|-+
T Consensus 79 ~~G~~ 83 (175)
T PF15446_consen 79 KPGPS 83 (175)
T ss_pred CCCCC
Confidence 77543
No 18
>KOG1973|consensus
Probab=95.77 E-value=0.005 Score=55.06 Aligned_cols=40 Identities=33% Similarity=0.973 Sum_probs=35.9
Q ss_pred CCCCeEEecCCCcCc-eecccccccccCCCCeEeecccccc
Q psy11049 53 AENPLVYCDGQGCNV-AVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 53 ~~n~iv~Cdg~~C~~-~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
...+||-||+..|.+ =||-.|-|+...|.+.|||..|...
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 478999999888994 5999999999999999999999864
No 19
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.60 E-value=0.013 Score=51.60 Aligned_cols=44 Identities=30% Similarity=0.884 Sum_probs=38.2
Q ss_pred ccCCCCCCCCCCeEEecCCCcCce-ecccccccccCCCCeEeeccccc
Q psy11049 45 VCSDDSGWAENPLVYCDGQGCNVA-VHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 45 VC~~~~~~~~n~iv~Cdg~~C~~~-VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
-|... .-.+||-|||.+|..- ||..|-|+...|.+.|+|+-|+.
T Consensus 225 fCqqv---SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 225 FCQQV---SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred Eeccc---ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 35554 3689999999999887 99999999999999999999974
No 20
>KOG4299|consensus
Probab=95.47 E-value=0.0055 Score=59.69 Aligned_cols=48 Identities=35% Similarity=0.968 Sum_probs=41.9
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccc----cCCCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV----TVPVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~----~~p~~~W~C~~C~~~ 92 (237)
+.|+-|...+.. |+||.||| |..+||+.|.-.+ .+|.+.|+|.-|...
T Consensus 254 ~fCsaCn~~~~F--~~~i~CD~--Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLF--NDIICCDG--CPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCcccc--ccceeecC--CchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 489999998875 99999995 9999999999765 478899999999853
No 21
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825|consensus
Probab=93.93 E-value=0.035 Score=55.65 Aligned_cols=47 Identities=32% Similarity=0.831 Sum_probs=41.1
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCce-ecccccccc--cCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVA-VHQACYGIV--TVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~-VH~~CYGi~--~~p~~~W~C~~C~~ 91 (237)
..|.||...+ ..+-||.|| .|+.. +|.+|.-.. ++|-+.|+|+-|..
T Consensus 216 ~~C~IC~~~D--pEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 216 VKCDICTVHD--PEDVLLLCD--SCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccceeeccCC--hHHhheeec--ccccceeeccccCcccccccccceecCcchh
Confidence 4799999977 578899999 59999 999999864 58999999999975
No 23
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.72 E-value=0.085 Score=35.74 Aligned_cols=31 Identities=26% Similarity=0.723 Sum_probs=27.4
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY 74 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY 74 (237)
..|.+|.+... +++.||.|. .|+..+|+.||
T Consensus 6 ~~C~~Cg~~~~-~~dDiVvCp--~CgapyHR~C~ 36 (54)
T PF14446_consen 6 CKCPVCGKKFK-DGDDIVVCP--ECGAPYHRDCW 36 (54)
T ss_pred ccChhhCCccc-CCCCEEECC--CCCCcccHHHH
Confidence 47999999763 588999998 89999999999
No 24
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=92.03 E-value=0.11 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.717 Sum_probs=25.8
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCC
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQG 194 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G 194 (237)
.|.+|++. ...+..|+|. .|.++||..|.....
T Consensus 1 ~C~vC~~~------~~~~~~i~C~--~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 1 YCPVCGQS------DDDGDMIQCD--SCNRWYHQECVGPPE 33 (51)
T ss_dssp EBTTTTSS------CTTSSEEEBS--TTSCEEETTTSTSSH
T ss_pred eCcCCCCc------CCCCCeEEcC--CCChhhCcccCCCCh
Confidence 37788874 2358999999 799999999987443
No 25
>KOG0383|consensus
Probab=85.88 E-value=0.35 Score=48.53 Aligned_cols=44 Identities=32% Similarity=0.916 Sum_probs=36.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccccc--CCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT--VPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--~p~~~W~C~~C~~ 91 (237)
..|.||.+ ...+|.|+ .|..++|.+|-+... +|.+.|+|.+|..
T Consensus 48 e~c~ic~~-----~g~~l~c~--tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 48 EACRICAD-----GGELLWCD--TCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhcC-----CCcEEEec--cccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 47999998 45778899 899999999998764 4556699999954
No 26
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=82.86 E-value=1.2 Score=29.11 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.7
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV 77 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~ 77 (237)
..|++|.+.-.....+-+.|. .|++.+|..|....
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~--~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCS--WCGLVCHKKCLSKV 46 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEET--TTT-EEETTGGCTS
T ss_pred CCCcccCcccCCCCCCeEEEC--CCCChHhhhhhhhc
Confidence 479999987644578889999 79999999998643
No 27
>KOG1973|consensus
Probab=82.07 E-value=0.74 Score=41.17 Aligned_cols=31 Identities=39% Similarity=1.079 Sum_probs=25.1
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCA 190 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA 190 (237)
...| +|.+. .+|.+|.|..++|. .|||.+|.
T Consensus 219 ~~yC-~Cnqv-------syg~Mi~CDn~~C~~eWFH~~CV 250 (274)
T KOG1973|consen 219 PTYC-ICNQV-------SYGKMIGCDNPGCPIEWFHFTCV 250 (274)
T ss_pred CEEE-Eeccc-------ccccccccCCCCCCcceEEEecc
Confidence 3455 56654 37999999999999 99999996
No 28
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=81.36 E-value=0.75 Score=32.57 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=19.9
Q ss_pred CcccccCCCCC-CCCCCeEEecCCCcCceecccccccc--c-------CCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSG-WAENPLVYCDGQGCNVAVHQACYGIV--T-------VPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~-~~~n~iv~Cdg~~C~~~VH~~CYGi~--~-------~p~~~W~C~~C~~ 91 (237)
..|.||+.... .+.-+.+.|+..+|+..+|..|.--- . +..-.+.|..|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 46999998765 34556799987789999999998532 1 1123467887775
No 29
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=80.65 E-value=1 Score=36.74 Aligned_cols=24 Identities=38% Similarity=0.911 Sum_probs=20.3
Q ss_pred eccccccc--ccCCCCeEeecccccc
Q psy11049 69 VHQACYGI--VTVPVGSWFCRKCESQ 92 (237)
Q Consensus 69 VH~~CYGi--~~~p~~~W~C~~C~~~ 92 (237)
+|..|.-. ..+|+++|+|..|...
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCC
Confidence 78999874 4689999999999964
No 30
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=79.82 E-value=0.96 Score=28.93 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.6
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.-.....+-+.|+ .|++.||..|...
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~--~C~~~~H~~C~~~ 45 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCS--WCKVKCHKKCADK 45 (50)
T ss_pred CChhhcchhhhccccceeEcC--CCCCchhhhhhcc
Confidence 469999876543336788999 7999999999754
No 31
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=78.92 E-value=0.9 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.638 Sum_probs=11.8
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQAC 73 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~C 73 (237)
.|.+|....+. +....|. .|+..+|..|
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~--~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCS--ECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S----EEE-T--TT-----HHH
T ss_pred cCCcCCCcCCC--CceEECc--cCCCccChhc
Confidence 58899987642 5788898 8999999987
No 32
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=75.64 E-value=1.5 Score=28.06 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=15.4
Q ss_pred eeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 155 CYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 155 C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
|.+|+... -.-+.|..++|...+|..|+.
T Consensus 1 C~~C~~iv--------~~G~~C~~~~C~~r~H~~C~~ 29 (43)
T PF08746_consen 1 CEACKEIV--------TQGQRCSNRDCNVRLHDDCFK 29 (43)
T ss_dssp -TTT-SB---------SSSEE-SS--S--EE-HHHHH
T ss_pred CcccchhH--------eeeccCCCCccCchHHHHHHH
Confidence 45666542 445799999999999999986
No 33
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=75.46 E-value=2.1 Score=24.99 Aligned_cols=25 Identities=24% Similarity=0.814 Sum_probs=18.7
Q ss_pred CCeEeeccccccccccccccccCCC
Q psy11049 81 VGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 81 ~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
+++|.|..|...-......|..|..
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--
T ss_pred CcCccCCCCcCCchHHhhhhhCcCC
Confidence 4789999999866677889999964
No 34
>KOG0957|consensus
Probab=74.98 E-value=1.6 Score=42.15 Aligned_cols=57 Identities=23% Similarity=0.595 Sum_probs=44.7
Q ss_pred CcccccccccccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc--cCCC----CeEeeccc
Q psy11049 29 GCNVAVHQELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV--TVPV----GSWFCRKC 89 (237)
Q Consensus 29 ~~~~~~~~~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~--~~p~----~~W~C~~C 89 (237)
+.+.+.....|+..|.||.... +...+++|| .|.+.+|.-|...+ ..|. -.|.|.-|
T Consensus 533 st~~~s~~~a~~ysCgiCkks~--dQHll~~CD--tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 533 STPAISAPKAMNYSCGICKKST--DQHLLTQCD--TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred CCcccccccccceeeeeeccch--hhHHHhhcc--hhhceeeccccCCccccCcccccCcceeeccc
Confidence 4444444467888999999865 678899999 89999999999854 4453 36999999
No 35
>KOG1044|consensus
Probab=73.84 E-value=1.1 Score=43.84 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=51.7
Q ss_pred eEeecccccccc------ccccccccCCCC---CCCceeecCCchhhhhcccccCCccccCcccCCCCcc---cccCCCc
Q psy11049 83 SWFCRKCESQEK------STKVRCELCPSK---DGALKRTDNNGWAHVVCALYIPEVRFGNVTSMEPILL---EEIPPER 150 (237)
Q Consensus 83 ~W~C~~C~~~~~------~~~~~C~LC~~~---~Galk~t~~~~WvHv~Calw~pev~f~~~~~~~~v~i---~~i~~~r 150 (237)
.-+|+.|..... .....|.-|... |++|... +.+| ||.|..-..--.+-+...|..-.+ ..-..+.
T Consensus 113 ~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llal-d~qw-hv~cfkc~~c~~vL~gey~skdg~pyce~dy~~~ 190 (670)
T KOG1044|consen 113 ECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLAL-DKQW-HVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQAK 190 (670)
T ss_pred hhhhhhhcCcccCCcccccCCccccchhhhhhccceeeee-ccce-eeeeeehhhhcccccceeeccCCCcchhhhhhhh
Confidence 456777764321 234567777532 3444332 3355 777765433222222222221111 1112345
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCe
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGL 195 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~ 195 (237)
+-.+|..|.+-. .|..++=. + ..|||+||+-.-+
T Consensus 191 fgvkc~~c~~fi-------sgkvLqag--~--kh~HPtCARCsRC 224 (670)
T KOG1044|consen 191 FGVKCEECEKFI-------SGKVLQAG--D--KHFHPTCARCSRC 224 (670)
T ss_pred cCeehHHhhhhh-------hhhhhhcc--C--cccCcchhhhhhh
Confidence 677888888754 36666522 3 8999999986543
No 36
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=72.68 E-value=4.1 Score=23.86 Aligned_cols=27 Identities=26% Similarity=0.669 Sum_probs=20.9
Q ss_pred cccccCCCCCCCCCC-eEEecCCCcCceecccc
Q psy11049 42 GCCVCSDDSGWAENP-LVYCDGQGCNVAVHQAC 73 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~-iv~Cdg~~C~~~VH~~C 73 (237)
.|.||...- ++. .-.|+ .|...+|..|
T Consensus 2 ~C~~C~~~~---~~~~~Y~C~--~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI---DGFYFYHCS--ECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc---CCCEeEEeC--CCCCeEcCcc
Confidence 489997654 233 78898 7999999988
No 37
>KOG4443|consensus
Probab=70.59 E-value=2.2 Score=42.39 Aligned_cols=47 Identities=32% Similarity=0.816 Sum_probs=35.0
Q ss_pred ccccCCCC-CCCCCCeEEecCCCcCceecccccccc--cCCCCeEeeccccc
Q psy11049 43 CCVCSDDS-GWAENPLVYCDGQGCNVAVHQACYGIV--TVPVGSWFCRKCES 91 (237)
Q Consensus 43 C~VC~~~~-~~~~n~iv~Cdg~~C~~~VH~~CYGi~--~~p~~~W~C~~C~~ 91 (237)
|.||..-. ..+...+++|+ +|.+++|-+|--.. .++.++|+|..|..
T Consensus 68 crvCe~c~~~gD~~kf~~Ck--~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCK--RCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred ceeeeeccccCCcccccccc--cccccccccccCCccccccCcccccHHHHh
Confidence 55554333 23688899999 69999998876543 57899999999864
No 38
>KOG1245|consensus
Probab=70.33 E-value=0.98 Score=48.92 Aligned_cols=48 Identities=29% Similarity=0.817 Sum_probs=41.1
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc--ccCCCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI--VTVPVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi--~~~p~~~W~C~~C~~~ 92 (237)
..|-||.... ..+.|+-|+ .|.-.+|..|.-+ ..+|.++|+|..|...
T Consensus 1109 ~~c~~cr~k~--~~~~m~lc~--~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1109 ALCKVCRRKK--QDEKMLLCD--ECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhhhcc--cchhhhhhH--hhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4699999876 357899999 5999999999975 4789999999999864
No 39
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=69.96 E-value=1.5 Score=27.71 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=25.1
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|.+|.+.-.... +-+.|. .|++.||..|...
T Consensus 12 ~~C~~C~~~i~~~~-~~~~C~--~C~~~~H~~C~~~ 44 (49)
T smart00109 12 TKCCVCRKSIWGSF-QGLRCS--WCKVKCHKKCAEK 44 (49)
T ss_pred CCccccccccCcCC-CCcCCC--CCCchHHHHHHhh
Confidence 46999988654322 568898 7999999999643
No 40
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=69.94 E-value=2.6 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.786 Sum_probs=19.2
Q ss_pred CeEeeccccccccccccccccCCC
Q psy11049 82 GSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 82 ~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
++|.|..|..........|..|..
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred CcccCCCCCCcChhhhccccccCC
Confidence 479999998765567788988875
No 41
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=68.73 E-value=5.9 Score=30.74 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=37.4
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|..|......-.|.-..|. .|...|=+.|-.. ...+..|+|..|..
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~--~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCV--DCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEET--TTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred cchhhhCCcccccCCCCCcCC--cCCccccCccCCc-CCCCCCEEChhhHH
Confidence 579999988777777779998 7999999998655 33467899999985
No 42
>KOG1512|consensus
Probab=64.87 E-value=3.6 Score=37.18 Aligned_cols=77 Identities=19% Similarity=0.409 Sum_probs=51.3
Q ss_pred CcccccCCCCCC----CCCCeEEecCCCcCceeccccccccc-----CCCCeEeecccccc-------ccccccccccCC
Q psy11049 41 GGCCVCSDDSGW----AENPLVYCDGQGCNVAVHQACYGIVT-----VPVGSWFCRKCESQ-------EKSTKVRCELCP 104 (237)
Q Consensus 41 ~~C~VC~~~~~~----~~n~iv~Cdg~~C~~~VH~~CYGi~~-----~p~~~W~C~~C~~~-------~~~~~~~C~LC~ 104 (237)
..|.+|++.... ..|.+|.|. .|.++.|.+|..... +..-.|.|-.|+.= .......|-.|-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~--~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CD 336 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCK--PCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCD 336 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeec--ccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheecccccc
Confidence 469999988764 478999999 899999999987642 34568999888731 012344555554
Q ss_pred CCCC----CceeecCCchh
Q psy11049 105 SKDG----ALKRTDNNGWA 119 (237)
Q Consensus 105 ~~~G----alk~t~~~~Wv 119 (237)
+..- -|+....|.|+
T Consensus 337 RG~HT~CVGL~~lP~G~WI 355 (381)
T KOG1512|consen 337 RGPHTLCVGLQDLPRGEWI 355 (381)
T ss_pred CCCCccccccccccCccch
Confidence 3221 24455566664
No 43
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=61.65 E-value=1.8 Score=28.16 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=18.9
Q ss_pred ccccCCCCCCCCCCeEEecCCCcCc---eecccccc
Q psy11049 43 CCVCSDDSGWAENPLVYCDGQGCNV---AVHQACYG 75 (237)
Q Consensus 43 C~VC~~~~~~~~n~iv~Cdg~~C~~---~VH~~CYG 75 (237)
|-||++.++.++.-+--|. |.- .||+.|.-
T Consensus 1 CrIC~~~~~~~~~li~pC~---C~Gs~~~vH~~CL~ 33 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCR---CKGSMKYVHRSCLE 33 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS----SSCCGSEECCHHH
T ss_pred CeEeCCcCCCCCceecccc---cCCCcchhHHHHHH
Confidence 6789988765442333464 877 89999974
No 44
>KOG1084|consensus
Probab=59.02 E-value=2.9 Score=39.20 Aligned_cols=137 Identities=18% Similarity=0.365 Sum_probs=82.4
Q ss_pred Eeeccccccc-----------cccccccccCCC----CCCCceeecCCchhhhhcccccCCc--c--ccCcc-cCCCCcc
Q psy11049 84 WFCRKCESQE-----------KSTKVRCELCPS----KDGALKRTDNNGWAHVVCALYIPEV--R--FGNVT-SMEPILL 143 (237)
Q Consensus 84 W~C~~C~~~~-----------~~~~~~C~LC~~----~~Galk~t~~~~WvHv~Calw~pev--~--f~~~~-~~~~v~i 143 (237)
|.|..|.... ......|.+|+. -+-.+.......++|..|+++...- . +.... .+....+
T Consensus 99 ~~c~~c~~~~~~~~~~~~~~~~~~~~~cg~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (375)
T KOG1084|consen 99 YVCKPCNKGAAHRGCLQLFGPELKHLKCGLCRARVRKLGSQLYDEYPSFEARMGCILIQNSRNGPAPEARLLCFSKSFLI 178 (375)
T ss_pred eeccccccccccCCchhhcCccccccccccchhHHhhhcccccchhhhhhhccchhHHhhccCCCCcccccchhhhhhhH
Confidence 8888886431 245778888881 1223333345678999999986542 1 11111 1111222
Q ss_pred cccCC----CcccceeeecCcCCcCCCcCccceeee----cC-CCCCCceeehhhhhcCCeeEEecCcccCCcceEecCC
Q psy11049 144 EEIPP----ERFNKVCYICEENGHKASRSKFGACMM----CN-KPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCS 214 (237)
Q Consensus 144 ~~i~~----~r~~~~C~~C~~~g~~~~~~~~G~~i~----C~-~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~ 214 (237)
+.+.+ ....+.|.+|..++ +.+. |. -..|..++|..||+..+..+...+ .+..+..+|.
T Consensus 179 e~~e~~~~~~~~~~~~~~c~~~~---------a~ts~~~~~~~~~~c~~~~e~~~~l~~~~~~~d~~---~~~~~h~~c~ 246 (375)
T KOG1084|consen 179 ESHEKVEDKCSEALNCKLCHEPG---------APTSQFDPCDIDDDCNRSREFFCALSPKATIPDIG---FELWYHRYCA 246 (375)
T ss_pred HhhhhhhhhcccccccccccCCC---------CcccccCCcchhhhhhhhhhhhhhhcCCCcCCccc---hhHHHHHHHH
Confidence 22211 22357899999884 4443 54 457899999999998887765411 2345678999
Q ss_pred ccchhhhhhcCCCcccCC
Q psy11049 215 HHYSKLVRKKGANIKPIP 232 (237)
Q Consensus 215 ~H~~~~~~~~~~~~k~~~ 232 (237)
.|.+.....-+..|+.+.
T Consensus 247 ~~~~~~~~~q~~~l~~~~ 264 (375)
T KOG1084|consen 247 LWAPNVHESQGGQLTNVD 264 (375)
T ss_pred hcCCcceeccCccccCch
Confidence 999877666555555543
No 45
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=58.94 E-value=7.2 Score=29.43 Aligned_cols=34 Identities=24% Similarity=0.642 Sum_probs=27.5
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
....|.+|... ....|.|.-.+|..++|..|.-.
T Consensus 54 ~~~~C~iC~~~----~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS----GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC----CceeEEcCCCCCCcCCCHHHHHH
Confidence 34689999996 56789999556999999999743
No 46
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=58.22 E-value=5.7 Score=35.25 Aligned_cols=32 Identities=25% Similarity=0.921 Sum_probs=26.4
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~ 191 (237)
.+.| ||++.. +|-+|.|..++|. .|||..|.=
T Consensus 221 ~lYC-fCqqvS-------yGqMVaCDn~nCkrEWFH~~CVG 253 (271)
T COG5034 221 ELYC-FCQQVS-------YGQMVACDNANCKREWFHLECVG 253 (271)
T ss_pred eeEE-Eecccc-------cccceecCCCCCchhheeccccc
Confidence 4566 688764 8999999999995 799999963
No 47
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=58.21 E-value=3.1 Score=30.51 Aligned_cols=33 Identities=33% Similarity=0.788 Sum_probs=25.3
Q ss_pred ceeeecCcCCcCCCcCccceeeecCC------------CCCCceeehhhhhc
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNK------------PGCRQQFHVTCAQT 192 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~------------~~C~~~FH~~CA~~ 192 (237)
..|.+|+..- +|.|++|.. +.|...||..|..+
T Consensus 21 d~CaICRnhi-------m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 21 DVCAICRNHI-------MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred chhhhhhccc-------cCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 4588888764 678888876 47889999999753
No 48
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=55.00 E-value=4.5 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=23.4
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
+.|.||++.... ++.++.-. |+=.+|..|..
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~---C~H~fh~~Ci~ 31 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLP---CGHVFHRSCIK 31 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEET---TSEEEEHHHHH
T ss_pred CCCcCCChhhcC-CCeEEEcc---CCCeeCHHHHH
Confidence 369999997643 56667664 99999999975
No 49
>KOG1244|consensus
Probab=53.71 E-value=7 Score=35.10 Aligned_cols=74 Identities=27% Similarity=0.585 Sum_probs=50.8
Q ss_pred CcccccCCCCCC-----CCCCeEEecCCCcCceecccccccc-----cCCCCeEeeccccccccccccccccCCCCCC--
Q psy11049 41 GGCCVCSDDSGW-----AENPLVYCDGQGCNVAVHQACYGIV-----TVPVGSWFCRKCESQEKSTKVRCELCPSKDG-- 108 (237)
Q Consensus 41 ~~C~VC~~~~~~-----~~n~iv~Cdg~~C~~~VH~~CYGi~-----~~p~~~W~C~~C~~~~~~~~~~C~LC~~~~G-- 108 (237)
-.|+.|..+... -..+||.|. .|+-+-|.+|.... .+..-.|.|.-|++ |.||+....
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscs--dcgrsghpsclqft~nm~~avk~yrwqcieck~--------csicgtsendd 294 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCS--DCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY--------CSICGTSENDD 294 (336)
T ss_pred cccceeccccccccccCCchhhcchh--hcCCCCCcchhhhhHHHHHHHHhheeeeeecce--------eccccCcCCCc
Confidence 469999987632 256899998 89999999999865 24567899999985 666664432
Q ss_pred -CceeecCCchhhhhcc
Q psy11049 109 -ALKRTDNNGWAHVVCA 124 (237)
Q Consensus 109 -alk~t~~~~WvHv~Ca 124 (237)
+|...+-.+=.|+-|+
T Consensus 295 qllfcddcdrgyhmycl 311 (336)
T KOG1244|consen 295 QLLFCDDCDRGYHMYCL 311 (336)
T ss_pred eeEeecccCCceeeEec
Confidence 2333333444566554
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=52.60 E-value=5 Score=26.33 Aligned_cols=30 Identities=37% Similarity=0.871 Sum_probs=18.9
Q ss_pred cccccCCCCCCCCCCe-EEecCCCcC---ceecccccc
Q psy11049 42 GCCVCSDDSGWAENPL-VYCDGQGCN---VAVHQACYG 75 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~i-v~Cdg~~C~---~~VH~~CYG 75 (237)
.|.||++.++ +++++ .-|. |. -.||+.|.-
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~---C~G~~~~vH~~Cl~ 34 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCR---CKGSLKYVHQECLE 34 (49)
T ss_pred CccCCCCCCC-CCCeeEeccc---cCCchhHHHHHHHH
Confidence 4889998443 33443 3454 65 459999974
No 51
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.57 E-value=14 Score=25.06 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=30.0
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeE
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLC 197 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~ 197 (237)
..+|.+|+++- + --+..|.|. .|.+.||-.|....|--+
T Consensus 5 ~~~C~~Cg~~~-~----~~dDiVvCp--~CgapyHR~C~~~~g~C~ 43 (54)
T PF14446_consen 5 GCKCPVCGKKF-K----DGDDIVVCP--ECGAPYHRDCWEKAGGCI 43 (54)
T ss_pred CccChhhCCcc-c----CCCCEEECC--CCCCcccHHHHhhCCceE
Confidence 45799999872 1 126788997 799999999998887444
No 52
>PHA02862 5L protein; Provisional
Probab=52.48 E-value=4.7 Score=32.84 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=22.9
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
|++.|-||++.++++. .-=.|.| =.--|||.|..
T Consensus 1 ~~diCWIC~~~~~e~~-~PC~C~G--S~K~VHq~CL~ 34 (156)
T PHA02862 1 MSDICWICNDVCDERN-NFCGCNE--EYKVVHIKCMQ 34 (156)
T ss_pred CCCEEEEecCcCCCCc-ccccccC--cchhHHHHHHH
Confidence 5678999999875442 2223443 46779999975
No 53
>KOG0954|consensus
Probab=44.33 E-value=23 Score=36.05 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=23.3
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh-cCCeeE
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ-TQGLLC 197 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~-~~G~~~ 197 (237)
..|.+|-++| |++-.=. .=..+.|++||+ -.-+.|
T Consensus 324 ppCvLCPkkG--------GamK~~~--sgT~wAHvsCALwIPEVsi 359 (893)
T KOG0954|consen 324 PPCVLCPKKG--------GAMKPTK--SGTKWAHVSCALWIPEVSI 359 (893)
T ss_pred CCeeeccccC--------CcccccC--CCCeeeEeeeeeccceeec
Confidence 5699999987 6654322 234899999995 333443
No 54
>KOG0955|consensus
Probab=43.43 E-value=31 Score=36.65 Aligned_cols=113 Identities=32% Similarity=0.499 Sum_probs=72.8
Q ss_pred ccccccccccCCCCCCCCCceecCCCCccccccccccc--------CcccccCCCCCCCCCCeEEecCCCcCceeccccc
Q psy11049 3 EMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQELML--------GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY 74 (237)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY 74 (237)
|+=+-|++|.+-..=+-|..+.|| +|+.+||++.+. =.|.-|..... ..+.|. -|.-.=|..+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~----~~v~c~--~cp~~~gAFk- 287 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ----RPVRCL--LCPSKGGAFK- 287 (1051)
T ss_pred CCCccceeecccccCCCceEEEcC--CCcchhhhhccCCCCCCCCcEeehhhccCcC----cccceE--eccCCCCcce-
Confidence 456779999999998889999999 899999997543 13666666432 224443 2322222211
Q ss_pred ccccCCCCeEeecccccc------------c------c----ccccccccCCCCC-CCceeec---CCchhhhhccccc
Q psy11049 75 GIVTVPVGSWFCRKCESQ------------E------K----STKVRCELCPSKD-GALKRTD---NNGWAHVVCALYI 127 (237)
Q Consensus 75 Gi~~~p~~~W~C~~C~~~------------~------~----~~~~~C~LC~~~~-Galk~t~---~~~WvHv~Calw~ 127 (237)
...++.|.=-.|..- + . .-...|.+|..++ |+..... -..|.||.||.-.
T Consensus 288 ---qt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~a 363 (1051)
T KOG0955|consen 288 ---QTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRA 363 (1051)
T ss_pred ---eccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhc
Confidence 122444554455311 0 1 2367899999998 8877654 3689999999754
No 55
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.65 E-value=22 Score=30.29 Aligned_cols=41 Identities=27% Similarity=0.715 Sum_probs=31.5
Q ss_pred cccccCCCCC---CCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 42 GCCVCSDDSG---WAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~---~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
.|-+|.+++- .+.+..+.|. .|+..+|+.|+.- . -|.+|..
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~--~C~~v~H~~C~~~--~-----~CpkC~R 197 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCP--KCKSVFHKSCFRK--K-----SCPKCAR 197 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCC--cCccccchhhcCC--C-----CCCCcHh
Confidence 5888877643 3466889999 7999999999973 1 1888875
No 56
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=41.61 E-value=28 Score=25.53 Aligned_cols=29 Identities=31% Similarity=0.654 Sum_probs=21.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY 74 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY 74 (237)
..|.||...-.. ..++.-- |+..||..|.
T Consensus 79 ~~C~vC~k~l~~--~~f~~~p---~~~v~H~~C~ 107 (109)
T PF10367_consen 79 TKCSVCGKPLGN--SVFVVFP---CGHVVHYSCI 107 (109)
T ss_pred CCccCcCCcCCC--ceEEEeC---CCeEEecccc
Confidence 569999997643 4444443 7799999996
No 57
>KOG4477|consensus
Probab=41.56 E-value=14 Score=31.26 Aligned_cols=33 Identities=21% Similarity=0.633 Sum_probs=27.2
Q ss_pred CCCCeEeeccccccccccccccccCCCCCCCce
Q psy11049 79 VPVGSWFCRKCESQEKSTKVRCELCPSKDGALK 111 (237)
Q Consensus 79 ~p~~~W~C~~C~~~~~~~~~~C~LC~~~~Galk 111 (237)
.+++.|-|..|.+........|.+|..+.|.-.
T Consensus 20 ~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTST 52 (228)
T KOG4477|consen 20 DDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTST 52 (228)
T ss_pred cccCceeeeeeeecchhhhhheeeecccccccc
Confidence 346889999999976778899999998887543
No 58
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=39.11 E-value=18 Score=27.66 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=27.7
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..+.|.||........+.-|.|. +|++..+..=-|
T Consensus 34 a~daCeiC~~~GY~q~g~~lvC~--~C~~~~~~~~ig 68 (102)
T PF10080_consen 34 AFDACEICGPKGYYQEGDQLVCK--NCGVRFNLPTIG 68 (102)
T ss_pred EEEeccccCCCceEEECCEEEEe--cCCCEEehhhcc
Confidence 34689999877777777777899 899999886555
No 59
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.09 E-value=28 Score=36.98 Aligned_cols=48 Identities=31% Similarity=0.756 Sum_probs=39.2
Q ss_pred CcccccCCCCC--CCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSG--WAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~--~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||++.-+ .+++..|-|. -|+..|-+.||- .+..++.=-|.+|+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~--eC~FPVCrpCYE-YEr~eG~q~CPqCkt 67 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACD--VCAFPVCRPCYE-YERKDGNQSCPQCKT 67 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEec--cCCCccccchhh-hhhhcCCccCCccCC
Confidence 47999999865 3588899998 899999999994 344577788999974
No 60
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=38.48 E-value=16 Score=27.06 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=11.6
Q ss_pred CCCCceeehhhhhc
Q psy11049 179 PGCRQQFHVTCAQT 192 (237)
Q Consensus 179 ~~C~~~FH~~CA~~ 192 (237)
+.|...||..|..+
T Consensus 50 g~C~H~FH~hCI~k 63 (85)
T PF12861_consen 50 GKCSHNFHMHCILK 63 (85)
T ss_pred ccCccHHHHHHHHH
Confidence 37999999999753
No 61
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=36.52 E-value=13 Score=30.69 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=27.7
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCc---eecccccccccCCCCeEeecccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNV---AVHQACYGIVTVPVGSWFCRKCE 90 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~---~VH~~CYGi~~~p~~~W~C~~C~ 90 (237)
+++..|-||++++.... -.|. |.- .||++|..-=...++...|+.|.
T Consensus 6 ~~~~~CRIC~~~~~~~~---~PC~---CkGs~k~VH~sCL~rWi~~s~~~~CeiC~ 55 (162)
T PHA02825 6 LMDKCCWICKDEYDVVT---NYCN---CKNENKIVHKECLEEWINTSKNKSCKICN 55 (162)
T ss_pred CCCCeeEecCCCCCCcc---CCcc---cCCCchHHHHHHHHHHHhcCCCCcccccC
Confidence 45567999998764322 3564 654 78999975322223334454444
No 62
>KOG4299|consensus
Probab=36.01 E-value=12 Score=36.99 Aligned_cols=45 Identities=24% Similarity=0.632 Sum_probs=34.3
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCC---CeEeeccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV---GSWFCRKCES 91 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~---~~W~C~~C~~ 91 (237)
-..|.+|.+. ..++-|+ .|.-++|+.|-+...-|+ ..|.|..|..
T Consensus 47 ~ts~~~~~~~-----gn~~~~~--~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSG-----GNLLCCD--HCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhc-----CCccccc--cCccccchhccCcccCcccccccccccCCCc
Confidence 4679999884 4567788 899999999988764454 5688888864
No 63
>PLN02400 cellulose synthase
Probab=34.13 E-value=43 Score=35.64 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=39.3
Q ss_pred CcccccCCCCCC--CCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGW--AENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~--~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||+++-+. +++..|-|. .|...|=+.||-. +..++.=.|.+|+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~--eCaFPVCRpCYEY-ERkeGnq~CPQCkT 86 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACN--ECAFPVCRPCYEY-ERKDGTQCCPQCKT 86 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEc--cCCCccccchhhe-ecccCCccCcccCC
Confidence 589999998653 588899999 8999999999944 44567788999985
No 64
>KOG1473|consensus
Probab=33.38 E-value=45 Score=35.70 Aligned_cols=65 Identities=31% Similarity=0.586 Sum_probs=48.4
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc--cCCCCeEeeccccccccccccccccCCCCCCCc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV--TVPVGSWFCRKCESQEKSTKVRCELCPSKDGAL 110 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~--~~p~~~W~C~~C~~~~~~~~~~C~LC~~~~Gal 110 (237)
-++.|.+|.+ .+.++.|. .|.-.||..|---. .+|+..|-|..|...+......|+|=+.+.+..
T Consensus 343 ~ddhcrf~~d-----~~~~lc~E--t~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~ 409 (1414)
T KOG1473|consen 343 YDDHCRFCHD-----LGDLLCCE--TCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDS 409 (1414)
T ss_pred ecccccccCc-----ccceeecc--cCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccc
Confidence 4467999887 46778888 89999999997644 468899999999986655555566655554444
No 65
>PLN02436 cellulose synthase A
Probab=32.80 E-value=40 Score=35.83 Aligned_cols=48 Identities=27% Similarity=0.726 Sum_probs=39.1
Q ss_pred CcccccCCCCC--CCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSG--WAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~--~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||+++-+ .+++..|-|. -|+..|-+.||- .+..++.=.|.+|+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn--~C~fpvCr~Cye-yer~eg~~~Cpqckt 86 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACN--ECAFPVCRPCYE-YERREGNQACPQCKT 86 (1094)
T ss_pred ccccccccccCcCCCCCEEEeec--cCCCccccchhh-hhhhcCCccCcccCC
Confidence 58999999864 4688899998 799999999994 344567788999974
No 66
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=32.05 E-value=31 Score=33.59 Aligned_cols=112 Identities=26% Similarity=0.481 Sum_probs=72.0
Q ss_pred ccccccccccCCCCCCCCCceecCCCCccccccccc---c-----cCcccccCCCCCCCCCCeEEecCCCcCceeccccc
Q psy11049 3 EMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQEL---M-----LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY 74 (237)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY 74 (237)
||-+-|-+|.+-.+=+-|-.+.|| ||.-+||+.. . .-.|.-|.-+ .+++..|. .|.-.-
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCd--gC~i~VHq~CYGI~f~peG~WlCrkCi~~----~~~i~~C~--fCps~d----- 257 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCD--GCEICVHQSCYGIQFLPEGFWLCRKCIYG----EYQIRCCS--FCPSSD----- 257 (669)
T ss_pred hhhhhhHhccccccCCcceEEEec--CcchhhhhhcccceecCcchhhhhhhccc----ccceeEEE--eccCCC-----
Confidence 688899999999998999999999 7777788742 1 1247777664 45666665 342221
Q ss_pred ccc-cCCCCeEeecccccc----------------------ccccccccccCCCCCCCceeecC---Cchhhhhccccc
Q psy11049 75 GIV-TVPVGSWFCRKCESQ----------------------EKSTKVRCELCPSKDGALKRTDN---NGWAHVVCALYI 127 (237)
Q Consensus 75 Gi~-~~p~~~W~C~~C~~~----------------------~~~~~~~C~LC~~~~Galk~t~~---~~WvHv~Calw~ 127 (237)
|+- .-.++.|-=.-|... ...-...|.+|..++|+-....+ -.-.||.||.-.
T Consensus 258 GaFkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 258 GAFKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred CceeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhc
Confidence 111 112344544444210 01236789999999998776543 367999999754
No 67
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.39 E-value=8.3 Score=28.07 Aligned_cols=48 Identities=29% Similarity=0.730 Sum_probs=22.8
Q ss_pred CcccccCCCCCC--CCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGW--AENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~--~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||++.-.. +++..|-|. .|+..|-+.||-... .++.-.|.+|..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~--eC~fPvCr~CyEYEr-keg~q~CpqCkt 59 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACH--ECAFPVCRPCYEYER-KEGNQVCPQCKT 59 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-S--SS-----HHHHHHHH-HTS-SB-TTT--
T ss_pred cccccccCccccCCCCCEEEEEc--ccCCccchhHHHHHh-hcCcccccccCC
Confidence 479999987663 588888998 899999999996543 356667888874
No 68
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=28.18 E-value=58 Score=23.31 Aligned_cols=35 Identities=20% Similarity=0.526 Sum_probs=28.3
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV 77 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~ 77 (237)
....|.+|... .+-.|.|.-.+|...+|-.|.-..
T Consensus 35 ~~~~C~~C~~~----~Ga~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 35 RKLKCSICKKK----GGACIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred hCCCCcCCCCC----CCeEEEEeCCCCCcEEChHHHccC
Confidence 34689999985 468899987789999999997543
No 69
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.03 E-value=52 Score=34.91 Aligned_cols=49 Identities=31% Similarity=0.752 Sum_probs=39.3
Q ss_pred cCcccccCCCCCC--CCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 40 LGGCCVCSDDSGW--AENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 40 ~~~C~VC~~~~~~--~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
-..|.||++.-+. +++..|-|. -|+..|-..||- .+..++.=.|.+|+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~--eC~fpvCr~cye-ye~~~g~~~cp~c~t 65 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACH--VCGFPVCKPCYE-YERSEGNQCCPQCNT 65 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEec--cCCCccccchhh-hhhhcCCccCCccCC
Confidence 3579999998653 578889998 899999999994 344567788999974
No 70
>KOG1844|consensus
Probab=27.01 E-value=42 Score=32.17 Aligned_cols=44 Identities=23% Similarity=0.579 Sum_probs=35.0
Q ss_pred ccCCCCCCCCCCeEEecCCCcCceecccccccccCCC-CeEeeccccc
Q psy11049 45 VCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV-GSWFCRKCES 91 (237)
Q Consensus 45 VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~-~~W~C~~C~~ 91 (237)
+|...++. ++.++.|+ -|..--|..|+|+..... +.+.|..|..
T Consensus 90 ~c~~~~~~-~g~~i~c~--~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~ 134 (508)
T KOG1844|consen 90 DCGLEDDM-EGLMIQCD--WCGRWQHKICCGSFKSTKPDKYVCEICTP 134 (508)
T ss_pred ccccccCC-CceeeCCc--ccCcccCceeeeecCCCCchhceeeeecc
Confidence 45555432 88999999 699999999999876544 7789999975
No 71
>PF12773 DZR: Double zinc ribbon
Probab=26.44 E-value=46 Score=21.25 Aligned_cols=39 Identities=15% Similarity=0.498 Sum_probs=22.2
Q ss_pred CeEEecCCCcCceecccccccccCCCCeEeeccccccccccccccccC
Q psy11049 56 PLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCELC 103 (237)
Q Consensus 56 ~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~~~~~~~C~LC 103 (237)
...||. .|+..+- ..+...++|..|..........|.-|
T Consensus 11 ~~~fC~--~CG~~l~-------~~~~~~~~C~~Cg~~~~~~~~fC~~C 49 (50)
T PF12773_consen 11 DAKFCP--HCGTPLP-------PPDQSKKICPNCGAENPPNAKFCPNC 49 (50)
T ss_pred cccCCh--hhcCChh-------hccCCCCCCcCCcCCCcCCcCccCcc
Confidence 346676 5666654 22345677777776544455555554
No 72
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.91 E-value=85 Score=21.38 Aligned_cols=34 Identities=12% Similarity=0.348 Sum_probs=27.1
Q ss_pred cccCcccccCCCCCC-CCCCeEEecCCCcCceecccc
Q psy11049 38 LMLGGCCVCSDDSGW-AENPLVYCDGQGCNVAVHQAC 73 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~-~~n~iv~Cdg~~C~~~VH~~C 73 (237)
.....|..|+..... ..+.++.|. .|+...|..=
T Consensus 26 ~TSq~C~~CG~~~~~~~~~r~~~C~--~Cg~~~~rD~ 60 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKKRRSGRVFTCP--NCGFEMDRDV 60 (69)
T ss_pred CCccCccCcccccccccccceEEcC--CCCCEECcHH
Confidence 356789999987765 588899998 7999988753
No 73
>KOG4443|consensus
Probab=24.56 E-value=32 Score=34.53 Aligned_cols=48 Identities=25% Similarity=0.606 Sum_probs=38.6
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccc---cCCCCeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV---TVPVGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~---~~p~~~W~C~~C~~ 91 (237)
.|-+|........+.|+.|. .|+...|..|..+- .+-.+.|.|..|..
T Consensus 20 mc~l~~s~G~~~ag~m~ac~--~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACS--DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhccccccccCcchhhh--hhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 38888888888899999999 79999999998742 12245599999974
No 74
>PLN02189 cellulose synthase
Probab=24.22 E-value=52 Score=34.91 Aligned_cols=48 Identities=27% Similarity=0.702 Sum_probs=39.0
Q ss_pred CcccccCCCCC--CCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSG--WAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~--~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||++.-+ .+++..|-|. -|+..|-+.||- .+..++.=.|.+|+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~--~C~fpvCr~Cye-yer~eg~q~CpqCkt 84 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACN--ECGFPVCRPCYE-YERREGTQNCPQCKT 84 (1040)
T ss_pred ccccccccccCcCCCCCEEEeec--cCCCccccchhh-hhhhcCCccCcccCC
Confidence 57999999866 4678889998 799999999994 344567788999974
No 75
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=22.98 E-value=1e+02 Score=29.87 Aligned_cols=54 Identities=20% Similarity=0.508 Sum_probs=34.3
Q ss_pred CCeEEecCCCcCceecccccccccCCCCeEeecccccccc--------cc-ccccccCCCCCCCceee
Q psy11049 55 NPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEK--------ST-KVRCELCPSKDGALKRT 113 (237)
Q Consensus 55 n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~~--------~~-~~~C~LC~~~~Galk~t 113 (237)
..|.||. .|..-....|.. ...+.|||..|...-. .. ...|.-||.=.+.|..+
T Consensus 3 ~~L~fC~--~C~~irc~~c~~---~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~ 65 (483)
T PF05502_consen 3 EELYFCE--HCHKIRCPRCVS---EEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVR 65 (483)
T ss_pred ccceecc--cccccCChhhcc---cccceeECccccccCChhhheeccceeccccccCCCCCCcceeE
Confidence 3578888 576665444432 2346899999986421 12 34788888777766543
No 76
>KOG3268|consensus
Probab=22.93 E-value=29 Score=29.36 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=26.9
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
.+..|.||...+.+..-+--.||...|+..+||.|..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~ 200 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLT 200 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHH
Confidence 3457888887655444444568888899999999974
No 77
>PF14768 RPA_interact_C: Replication protein A interacting C-terminal
Probab=20.65 E-value=91 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.552 Sum_probs=23.8
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceeccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQA 72 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~ 72 (237)
.|-||....-...+..|+|. |++.++..
T Consensus 1 iCPVC~~~~L~~~~~~i~C~---Cgl~l~~~ 28 (82)
T PF14768_consen 1 ICPVCQKGNLRENSNVISCS---CGLRLNTQ 28 (82)
T ss_pred CCCccCCCcccccCCeEECC---CccEEecC
Confidence 38899999888899999997 88887766
No 78
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.36 E-value=57 Score=19.98 Aligned_cols=26 Identities=27% Similarity=0.706 Sum_probs=18.8
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCce
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVA 68 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~ 68 (237)
..|.+|........+-..+|+ .|+-.
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~--~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCD--RCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhh--hCceE
Confidence 358888887666678888887 67643
No 79
>KOG0383|consensus
Probab=20.34 E-value=43 Score=33.99 Aligned_cols=56 Identities=20% Similarity=0.567 Sum_probs=39.1
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVR 222 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~ 222 (237)
...|.+|... |-.+-|. .|..+||..|.-..+......+ +.- .+.+|+.+..+..+
T Consensus 47 ~e~c~ic~~~---------g~~l~c~--tC~~s~h~~cl~~pl~~~p~~~-~~c---~Rc~~p~~~~k~~~ 102 (696)
T KOG0383|consen 47 QEACRICADG---------GELLWCD--TCPASFHASCLGPPLTPQPNGE-FIC---PRCFCPKNAGKIEK 102 (696)
T ss_pred hhhhhhhcCC---------CcEEEec--cccHHHHHHccCCCCCcCCccc-eee---eeeccCCCcccccc
Confidence 4679999976 6778888 7999999999977665554332 211 14588888655444
No 80
>COG4393 Predicted membrane protein [Function unknown]
Probab=20.09 E-value=49 Score=30.71 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=24.0
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceeccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQA 72 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~ 72 (237)
-|.|.+|++...-..|.-|.|. +|++..-..
T Consensus 334 fDAC~iCGd~GYv~e~dqvICv--~C~Vrmfip 364 (405)
T COG4393 334 FDACDICGDQGYVMEGDQVICV--RCDVRMFIP 364 (405)
T ss_pred ehHHHhccccceEeECCEEEEE--EccEEEEcc
Confidence 3689999999987777777799 698776443
Done!