Query psy11049
Match_columns 237
No_of_seqs 179 out of 1029
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 16:49:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 99.6 9E-16 3.1E-20 113.3 4.1 69 145-220 10-85 (87)
2 2ku3_A Bromodomain-containing 99.2 2.7E-12 9.3E-17 91.1 2.7 54 37-92 13-66 (71)
3 2l43_A N-teminal domain from h 99.1 2.1E-11 7.2E-16 89.9 1.5 53 38-92 23-75 (88)
4 2yt5_A Metal-response element- 98.9 5.3E-10 1.8E-14 77.7 3.0 52 39-92 5-61 (66)
5 1wev_A Riken cDNA 1110020M19; 98.9 6.8E-10 2.3E-14 81.8 3.4 53 38-92 14-72 (88)
6 4gne_A Histone-lysine N-methyl 98.8 6.4E-09 2.2E-13 79.2 6.2 76 38-118 13-96 (107)
7 1f62_A Transcription factor WS 98.7 1E-08 3.4E-13 67.7 3.0 46 42-91 2-49 (51)
8 1mm2_A MI2-beta; PHD, zinc fin 98.6 2.5E-08 8.4E-13 68.4 3.0 50 36-92 5-56 (61)
9 2e6r_A Jumonji/ARID domain-con 98.6 2.1E-08 7.3E-13 74.3 2.4 52 37-92 13-66 (92)
10 2lri_C Autoimmune regulator; Z 98.5 7.2E-08 2.5E-12 67.2 3.6 47 39-92 11-59 (66)
11 3v43_A Histone acetyltransfera 98.5 2E-07 7E-12 71.3 5.8 80 7-91 7-111 (112)
12 2yql_A PHD finger protein 21A; 98.5 7.7E-08 2.6E-12 64.7 3.0 46 39-91 8-55 (56)
13 1xwh_A Autoimmune regulator; P 98.5 1E-07 3.4E-12 66.3 3.4 47 39-92 7-55 (66)
14 2kwj_A Zinc finger protein DPF 98.4 2.1E-07 7.3E-12 71.4 5.5 79 8-92 4-108 (114)
15 3v43_A Histone acetyltransfera 98.4 1.6E-07 5.6E-12 71.8 4.3 49 40-90 5-62 (112)
16 2puy_A PHD finger protein 21A; 98.4 1.4E-07 4.7E-12 64.3 2.7 46 40-92 5-52 (60)
17 2e6s_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 65.2 4.5 49 39-91 25-76 (77)
18 2l5u_A Chromodomain-helicase-D 98.3 3E-07 1E-11 62.9 3.1 46 39-91 10-57 (61)
19 2ysm_A Myeloid/lymphoid or mix 98.3 6.9E-07 2.3E-11 68.0 5.4 76 38-125 5-85 (111)
20 1fp0_A KAP-1 corepressor; PHD 98.3 5.9E-07 2E-11 65.9 4.2 48 38-92 23-72 (88)
21 3asl_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 64.1 3.1 46 42-91 20-68 (70)
22 3shb_A E3 ubiquitin-protein li 98.2 7.4E-07 2.5E-11 63.9 2.9 47 41-91 27-76 (77)
23 2kwj_A Zinc finger protein DPF 98.1 9.8E-07 3.4E-11 67.6 2.7 75 41-125 2-89 (114)
24 2ysm_A Myeloid/lymphoid or mix 98.1 3.7E-06 1.3E-10 63.9 5.4 76 8-91 10-103 (111)
25 2k16_A Transcription initiatio 97.9 3.2E-06 1.1E-10 59.9 2.3 50 39-92 17-68 (75)
26 1wen_A Inhibitor of growth fam 97.9 9.5E-06 3.3E-10 57.1 4.6 49 41-93 17-66 (71)
27 3c6w_A P28ING5, inhibitor of g 97.9 3.4E-06 1.2E-10 57.3 1.4 46 42-91 11-57 (59)
28 2vnf_A ING 4, P29ING4, inhibit 97.9 3.7E-06 1.3E-10 57.3 1.3 46 42-91 12-58 (60)
29 3u5n_A E3 ubiquitin-protein li 97.8 1.1E-05 3.9E-10 67.7 3.4 49 38-93 5-55 (207)
30 3o36_A Transcription intermedi 97.8 1.6E-05 5.3E-10 65.6 3.9 48 39-93 3-52 (184)
31 2jmi_A Protein YNG1, ING1 homo 97.7 1.1E-05 3.7E-10 59.4 2.3 48 41-92 27-76 (90)
32 2g6q_A Inhibitor of growth pro 97.7 8.3E-06 2.8E-10 55.9 1.2 48 41-92 12-60 (62)
33 3ask_A E3 ubiquitin-protein li 97.7 2.1E-05 7.3E-10 67.0 3.8 48 40-91 174-224 (226)
34 2lv9_A Histone-lysine N-methyl 97.7 2.7E-05 9.2E-10 58.1 3.9 45 41-91 29-75 (98)
35 1weu_A Inhibitor of growth fam 97.7 2E-05 6.9E-10 58.1 3.1 48 41-92 37-85 (91)
36 2ro1_A Transcription intermedi 97.6 2.2E-05 7.5E-10 65.2 2.0 46 40-92 2-49 (189)
37 2rsd_A E3 SUMO-protein ligase 97.5 8E-05 2.7E-09 51.7 3.4 47 42-91 12-64 (68)
38 1wew_A DNA-binding family prot 97.2 0.00033 1.1E-08 49.9 3.9 49 41-92 17-72 (78)
39 2vpb_A Hpygo1, pygopus homolog 97.1 0.00011 3.9E-09 50.7 1.2 52 37-90 5-64 (65)
40 1we9_A PHD finger family prote 97.1 0.00036 1.2E-08 47.5 3.7 50 40-92 6-58 (64)
41 3o70_A PHD finger protein 13; 97.1 0.00029 9.9E-09 49.0 3.0 46 41-91 20-66 (68)
42 1x4i_A Inhibitor of growth pro 97.1 0.00012 4.2E-09 51.2 0.7 45 42-92 8-55 (70)
43 2kgg_A Histone demethylase jar 96.9 0.00038 1.3E-08 45.7 2.0 47 42-90 4-52 (52)
44 1wee_A PHD finger family prote 96.8 0.00087 3E-08 46.8 3.6 48 41-92 17-66 (72)
45 3o7a_A PHD finger protein 13 v 96.8 0.00052 1.8E-08 45.0 2.1 44 44-91 7-51 (52)
46 1wep_A PHF8; structural genomi 96.8 0.00076 2.6E-08 48.0 2.8 47 42-92 14-63 (79)
47 2xb1_A Pygopus homolog 2, B-ce 96.6 0.0011 3.8E-08 49.8 2.8 50 41-92 4-61 (105)
48 1wem_A Death associated transc 96.3 0.0014 4.6E-08 46.2 1.5 47 41-92 17-70 (76)
49 2lbm_A Transcriptional regulat 95.9 0.0031 1.1E-07 49.9 2.3 47 38-91 61-116 (142)
50 3ql9_A Transcriptional regulat 95.9 0.0021 7.3E-08 50.1 1.2 47 38-91 55-110 (129)
51 3kqi_A GRC5, PHD finger protei 95.8 0.0022 7.5E-08 45.1 0.8 47 42-91 11-60 (75)
52 2ri7_A Nucleosome-remodeling f 95.6 0.0015 5.3E-08 52.8 -0.8 48 41-92 9-59 (174)
53 1wew_A DNA-binding family prot 94.3 0.051 1.7E-06 38.3 4.4 34 151-191 15-48 (78)
54 2puy_A PHD finger protein 21A; 93.6 0.027 9.3E-07 37.6 1.7 52 152-223 5-56 (60)
55 3lqh_A Histone-lysine N-methyl 93.2 0.026 9E-07 46.4 1.3 49 42-92 4-63 (183)
56 2rsd_A E3 SUMO-protein ligase 93.1 0.041 1.4E-06 37.7 2.1 32 152-190 10-41 (68)
57 1we9_A PHD finger family prote 93.0 0.05 1.7E-06 36.6 2.3 55 152-221 6-60 (64)
58 3c6w_A P28ING5, inhibitor of g 92.3 0.066 2.3E-06 35.8 2.1 32 152-191 9-41 (59)
59 1wep_A PHF8; structural genomi 92.3 0.11 3.8E-06 36.5 3.4 32 152-191 12-43 (79)
60 2g6q_A Inhibitor of growth pro 92.2 0.069 2.4E-06 36.1 2.1 33 152-192 11-44 (62)
61 4gne_A Histone-lysine N-methyl 91.8 0.099 3.4E-06 39.3 2.8 31 152-191 15-45 (107)
62 1wen_A Inhibitor of growth fam 91.6 0.14 4.9E-06 35.4 3.3 32 152-191 16-48 (71)
63 2vnf_A ING 4, P29ING4, inhibit 91.1 0.1 3.6E-06 34.8 2.1 32 152-191 10-42 (60)
64 2k16_A Transcription initiatio 91.1 0.11 3.8E-06 36.0 2.3 52 152-221 18-70 (75)
65 1wem_A Death associated transc 90.6 0.17 5.9E-06 35.2 2.9 31 152-191 16-46 (76)
66 1weu_A Inhibitor of growth fam 90.3 0.16 5.4E-06 37.0 2.6 32 152-191 36-68 (91)
67 2yql_A PHD finger protein 21A; 90.0 0.14 4.8E-06 33.5 2.0 31 151-192 8-38 (56)
68 1xwh_A Autoimmune regulator; P 90.0 0.16 5.5E-06 34.5 2.3 31 151-192 7-37 (66)
69 2l5u_A Chromodomain-helicase-D 90.0 0.2 6.7E-06 33.5 2.7 31 151-192 10-40 (61)
70 2lri_C Autoimmune regulator; Z 89.6 0.22 7.6E-06 34.0 2.7 29 152-191 12-40 (66)
71 3o70_A PHD finger protein 13; 89.5 0.23 7.9E-06 34.0 2.8 32 152-192 19-50 (68)
72 2kgg_A Histone demethylase jar 89.5 0.18 6.2E-06 32.6 2.1 32 154-191 4-35 (52)
73 1weq_A PHD finger protein 7; s 89.4 0.84 2.9E-05 32.8 5.8 67 13-91 3-78 (85)
74 1f62_A Transcription factor WS 89.0 0.2 6.8E-06 32.0 2.1 31 154-192 2-32 (51)
75 2xb1_A Pygopus homolog 2, B-ce 89.0 0.19 6.6E-06 37.4 2.2 33 153-191 4-36 (105)
76 1wee_A PHD finger family prote 88.9 0.2 6.8E-06 34.5 2.1 34 150-192 14-48 (72)
77 1mm2_A MI2-beta; PHD, zinc fin 88.5 0.17 5.8E-06 33.8 1.5 31 151-192 8-38 (61)
78 2lv9_A Histone-lysine N-methyl 88.4 0.23 7.9E-06 36.4 2.3 30 153-191 29-58 (98)
79 2jmi_A Protein YNG1, ING1 homo 88.4 0.25 8.5E-06 35.9 2.4 32 152-191 26-58 (90)
80 2vpb_A Hpygo1, pygopus homolog 88.0 0.3 1E-05 33.2 2.5 34 152-191 8-41 (65)
81 3o7a_A PHD finger protein 13 v 87.5 0.27 9.2E-06 31.7 1.9 28 157-192 8-35 (52)
82 3kv5_D JMJC domain-containing 87.5 0.11 3.7E-06 48.9 -0.0 45 44-91 40-87 (488)
83 2ri7_A Nucleosome-remodeling f 87.4 0.25 8.4E-06 39.6 2.1 33 151-191 7-39 (174)
84 1fp0_A KAP-1 corepressor; PHD 86.1 0.58 2E-05 33.8 3.3 31 151-192 24-54 (88)
85 3pur_A Lysine-specific demethy 85.8 0.41 1.4E-05 45.3 2.9 37 53-91 54-93 (528)
86 3kv4_A PHD finger protein 8; e 83.8 0.12 4E-06 48.1 -1.7 47 42-91 6-55 (447)
87 3kqi_A GRC5, PHD finger protei 83.5 0.52 1.8E-05 32.7 2.0 31 153-191 11-41 (75)
88 3rsn_A SET1/ASH2 histone methy 81.7 0.98 3.4E-05 36.8 3.2 50 157-218 9-58 (177)
89 3asl_A E3 ubiquitin-protein li 81.7 0.79 2.7E-05 31.4 2.3 30 154-191 20-49 (70)
90 4bbq_A Lysine-specific demethy 81.4 1.1 3.7E-05 33.3 3.2 37 54-92 72-114 (117)
91 2e6r_A Jumonji/ARID domain-con 81.2 0.66 2.3E-05 33.6 1.8 55 152-223 16-70 (92)
92 2yt5_A Metal-response element- 81.1 1.1 3.7E-05 30.0 2.8 35 152-192 6-40 (66)
93 2ku3_A Bromodomain-containing 81.0 1.1 3.9E-05 30.8 2.9 37 151-193 15-51 (71)
94 1x4i_A Inhibitor of growth pro 80.3 0.99 3.4E-05 31.0 2.4 32 153-192 7-39 (70)
95 1wil_A KIAA1045 protein; ring 80.1 1 3.5E-05 32.3 2.4 38 152-198 15-52 (89)
96 2e6s_A E3 ubiquitin-protein li 77.9 0.98 3.4E-05 31.6 1.8 30 154-191 28-57 (77)
97 2l43_A N-teminal domain from h 76.4 1.7 5.7E-05 31.1 2.7 37 151-193 24-60 (88)
98 1ptq_A Protein kinase C delta 76.2 1.8 6.1E-05 27.0 2.6 34 41-76 12-45 (50)
99 2zet_C Melanophilin; complex, 75.5 1.5 5.3E-05 34.7 2.5 50 40-92 68-117 (153)
100 1wev_A Riken cDNA 1110020M19; 75.5 1.5 5E-05 31.4 2.2 34 152-191 16-49 (88)
101 1wil_A KIAA1045 protein; ring 74.9 1 3.4E-05 32.4 1.1 50 38-92 13-76 (89)
102 3o36_A Transcription intermedi 73.7 1.4 4.7E-05 35.5 1.9 29 152-191 4-32 (184)
103 3lqh_A Histone-lysine N-methyl 71.4 2 6.8E-05 35.0 2.3 35 153-191 3-37 (183)
104 3u5n_A E3 ubiquitin-protein li 71.1 1.9 6.4E-05 35.5 2.1 29 152-191 7-35 (207)
105 3uej_A NPKC-delta, protein kin 70.5 2.8 9.6E-05 27.9 2.6 34 41-76 21-54 (65)
106 2yuu_A NPKC-delta, protein kin 70.3 5.9 0.0002 27.6 4.4 34 41-76 29-62 (83)
107 2enz_A NPKC-theta, protein kin 70.1 5 0.00017 26.6 3.8 34 41-76 24-57 (65)
108 1y8f_A UNC-13 homolog A, MUNC1 68.6 3.9 0.00013 27.3 3.0 34 41-76 25-58 (66)
109 1v5n_A PDI-like hypothetical p 68.4 4.5 0.00015 28.9 3.4 62 118-193 18-79 (89)
110 2enn_A NPKC-theta, protein kin 68.3 3.9 0.00013 28.3 3.0 34 41-76 35-68 (77)
111 3shb_A E3 ubiquitin-protein li 68.0 2.5 8.6E-05 29.5 2.0 30 154-191 28-57 (77)
112 3gj5_B Nuclear pore complex pr 67.4 2.8 9.6E-05 24.8 1.8 26 80-105 4-29 (34)
113 4bbq_A Lysine-specific demethy 67.1 3.6 0.00012 30.4 2.8 73 42-130 9-96 (117)
114 2lbm_A Transcriptional regulat 66.9 3.9 0.00013 32.0 3.0 30 151-191 62-91 (142)
115 1zbd_B Rabphilin-3A; G protein 66.6 5.2 0.00018 30.9 3.7 52 39-92 54-107 (134)
116 1faq_A RAF-1; transferase, ser 65.4 3.5 0.00012 25.9 2.1 30 41-76 15-44 (52)
117 1vyx_A ORF K3, K3RING; zinc-bi 65.1 0.39 1.3E-05 31.9 -2.7 47 40-91 6-55 (60)
118 2d8s_A Cellular modulator of i 63.5 2.6 8.9E-05 29.4 1.3 31 41-75 16-50 (80)
119 4b6d_A RAC GTPase-activating p 63.2 3.7 0.00013 27.3 2.0 34 41-77 20-53 (61)
120 2eli_A Protein kinase C alpha 62.8 5.8 0.0002 27.9 3.1 34 41-76 29-62 (85)
121 2d9g_A YY1-associated factor 2 61.4 6.9 0.00023 25.3 3.0 30 79-108 7-36 (53)
122 2ro1_A Transcription intermedi 61.0 2.4 8.3E-05 34.5 0.9 29 153-192 3-31 (189)
123 1nj3_A NPL4; NZF domain, rubre 61.0 5.9 0.0002 22.4 2.3 26 81-106 4-29 (31)
124 3kv5_D JMJC domain-containing 60.5 3.9 0.00013 38.2 2.3 32 152-191 37-68 (488)
125 2ct0_A Non-SMC element 1 homol 60.0 4.5 0.00015 27.9 2.0 30 152-191 15-44 (74)
126 2ecm_A Ring finger and CHY zin 59.9 9 0.00031 23.6 3.4 33 40-75 5-37 (55)
127 2ct0_A Non-SMC element 1 homol 59.8 5.9 0.0002 27.3 2.6 33 37-75 12-44 (74)
128 3gj3_B Nuclear pore complex pr 59.3 4.5 0.00015 23.7 1.6 26 80-105 4-29 (33)
129 2fnf_X Putative RAS effector N 59.0 6 0.00021 27.0 2.5 31 41-76 36-66 (72)
130 2ebr_A Nuclear pore complex pr 58.2 7.1 0.00024 24.7 2.5 28 79-106 7-34 (47)
131 3ql9_A Transcriptional regulat 57.2 7.3 0.00025 29.9 3.0 31 151-192 56-86 (129)
132 2lk0_A RNA-binding protein 5; 54.3 7.1 0.00024 22.4 1.9 26 81-106 3-28 (32)
133 3a9j_C Mitogen-activated prote 54.0 8.3 0.00028 22.2 2.2 27 80-106 5-31 (34)
134 3k1l_B Fancl; UBC, ring, RWD, 53.9 7.3 0.00025 35.1 2.8 38 38-75 306-344 (381)
135 1r79_A Diacylglycerol kinase, 53.5 8.6 0.00029 27.3 2.6 35 40-76 38-73 (84)
136 3rsn_A SET1/ASH2 histone methy 52.7 27 0.00093 28.2 5.8 36 54-91 17-58 (177)
137 2ecl_A Ring-box protein 2; RNF 51.9 11 0.00039 25.7 3.0 48 40-91 15-72 (81)
138 1iym_A EL5; ring-H2 finger, ub 50.6 12 0.00041 23.0 2.8 32 41-75 6-37 (55)
139 3ask_A E3 ubiquitin-protein li 49.3 5.4 0.00019 33.6 1.1 30 154-191 176-205 (226)
140 1rfh_A RAS association (ralgds 49.3 4.8 0.00017 26.3 0.7 31 41-76 23-53 (59)
141 2db6_A SH3 and cysteine rich d 48.7 2.6 9E-05 28.9 -0.8 34 41-76 29-62 (74)
142 2csz_A Synaptotagmin-like prot 47.0 14 0.00048 25.7 2.8 58 29-91 15-72 (76)
143 2ebq_A Nuclear pore complex pr 46.1 12 0.0004 23.7 2.1 28 79-106 7-34 (47)
144 2k1p_A Zinc finger RAN-binding 46.1 12 0.00041 21.6 2.0 26 81-106 4-29 (33)
145 2ep4_A Ring finger protein 24; 46.0 16 0.00055 24.0 3.0 34 38-75 13-46 (74)
146 3pfq_A PKC-B, PKC-beta, protei 45.2 7.8 0.00027 37.2 1.7 33 41-75 49-81 (674)
147 1kbe_A Kinase suppressor of RA 43.3 21 0.00073 22.5 3.0 29 41-75 15-43 (49)
148 2a20_A Regulating synaptic mem 43.3 31 0.0011 22.9 3.9 48 41-91 10-59 (62)
149 3kv4_A PHD finger protein 8; e 42.3 9.8 0.00034 35.2 1.8 30 155-191 7-36 (447)
150 3a1b_A DNA (cytosine-5)-methyl 38.7 12 0.00043 29.7 1.7 47 39-90 78-132 (159)
151 2ku7_A MLL1 PHD3-CYP33 RRM chi 36.3 9.2 0.00032 28.1 0.5 16 173-190 2-17 (140)
152 1x68_A FHL5 protein; four-and- 35.9 13 0.00045 24.8 1.3 63 151-220 4-66 (76)
153 2row_A RHO-associated protein 34.8 15 0.0005 26.0 1.3 33 41-75 36-70 (84)
154 1x62_A C-terminal LIM domain p 34.7 13 0.00045 25.0 1.1 62 151-223 14-75 (79)
155 2lq6_A Bromodomain-containing 33.9 26 0.00089 24.7 2.6 32 41-75 18-49 (87)
156 2ebv_A Nuclear pore complex pr 33.5 20 0.00068 23.6 1.7 27 79-105 27-53 (57)
157 3nw0_A Non-structural maintena 33.5 18 0.00061 30.4 1.9 31 152-192 180-210 (238)
158 3gj8_B Nuclear pore complex pr 32.8 20 0.0007 25.5 1.9 26 80-105 62-87 (92)
159 2ect_A Ring finger protein 126 32.4 53 0.0018 21.5 3.9 33 39-75 14-46 (78)
160 1e4u_A Transcriptional repress 32.4 13 0.00046 25.4 0.8 47 41-91 12-58 (78)
161 2egq_A FHL1 protein; LIM domai 31.3 18 0.00062 24.0 1.3 63 151-219 14-76 (77)
162 2d8z_A Four and A half LIM dom 31.2 15 0.00051 23.9 0.9 60 151-221 4-63 (70)
163 2dar_A PDZ and LIM domain prot 30.8 16 0.00055 25.3 1.0 63 148-221 21-83 (90)
164 1nyp_A Pinch protein; LIM doma 30.6 13 0.00045 23.9 0.5 59 151-220 4-62 (66)
165 2ehe_A Four and A half LIM dom 30.2 18 0.0006 24.4 1.1 62 151-221 14-75 (82)
166 2kiz_A E3 ubiquitin-protein li 29.9 32 0.0011 22.1 2.4 33 39-75 13-45 (69)
167 2d8x_A Protein pinch; LIM doma 29.4 19 0.00065 23.4 1.2 60 152-222 5-64 (70)
168 1x64_A Alpha-actinin-2 associa 28.6 18 0.00063 24.9 1.0 61 151-223 24-85 (89)
169 1v5n_A PDI-like hypothetical p 28.6 25 0.00086 24.8 1.7 32 41-77 48-79 (89)
170 1n0z_A ZNF265; zinc finger, RN 28.1 38 0.0013 20.9 2.3 26 81-106 12-39 (45)
171 2ku7_A MLL1 PHD3-CYP33 RRM chi 27.8 9.5 0.00032 28.1 -0.7 34 56-91 1-43 (140)
172 2vrw_B P95VAV, VAV1, proto-onc 27.2 45 0.0015 29.5 3.6 33 41-75 358-390 (406)
173 3ky9_A Proto-oncogene VAV; cal 26.7 45 0.0015 31.3 3.6 35 41-77 530-564 (587)
174 1x4j_A Ring finger protein 38; 26.7 32 0.0011 22.6 2.0 33 39-75 22-54 (75)
175 1weo_A Cellulose synthase, cat 26.5 15 0.0005 26.5 0.1 48 41-91 17-66 (93)
176 2crc_A Ubiquitin conjugating e 26.4 37 0.0013 21.7 2.1 28 80-107 7-34 (52)
177 1wig_A KIAA1808 protein; LIM d 25.9 28 0.00095 23.1 1.5 59 151-220 4-63 (73)
178 2pv0_B DNA (cytosine-5)-methyl 25.5 30 0.001 31.3 2.0 48 39-91 92-147 (386)
179 1a7i_A QCRP2 (LIM1); LIM domai 24.2 26 0.00088 23.5 1.1 61 152-222 7-67 (81)
180 1x63_A Skeletal muscle LIM-pro 24.1 26 0.00088 23.5 1.1 63 151-222 14-76 (82)
181 2cr8_A MDM4 protein; ZF-ranbp 23.8 42 0.0014 21.5 1.9 27 79-105 7-33 (53)
182 1g47_A Pinch protein; LIM doma 22.7 27 0.00092 23.0 0.9 62 150-220 9-70 (77)
183 3nw0_A Non-structural maintena 22.5 36 0.0012 28.5 1.8 31 41-77 181-211 (238)
184 1x3h_A Leupaxin; paxillin fami 22.3 22 0.00075 23.7 0.4 60 151-221 14-73 (80)
185 1wyh_A SLIM 2, skeletal muscle 22.1 21 0.00073 23.2 0.3 62 151-221 4-65 (72)
186 3gj7_B Nuclear pore complex pr 20.7 44 0.0015 24.2 1.7 26 80-105 69-94 (98)
187 3dpl_R Ring-box protein 1; ubi 20.2 65 0.0022 23.3 2.7 33 39-74 36-82 (106)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=9e-16 Score=113.29 Aligned_cols=69 Identities=38% Similarity=0.786 Sum_probs=56.8
Q ss_pred ccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCc-------ccCCcceEecCCccc
Q psy11049 145 EIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGN-------YLDNVKYCGYCSHHY 217 (237)
Q Consensus 145 ~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~-------~~~~~~~~~~C~~H~ 217 (237)
+|+++|++++|.+|++++ .|++|+|..++|.++||++||+++|+.++.... ....+.+.+||++|+
T Consensus 10 NIp~~R~~l~C~iC~~~~-------~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~Hs 82 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKG-------VGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHT 82 (87)
T ss_dssp CCCCCCCCCCBTTTTBCC-------SSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGS
T ss_pred CCChHHhcCCCcCCCCCC-------CcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCC
Confidence 578899999999999763 499999999999999999999999998864321 112356889999999
Q ss_pred hhh
Q psy11049 218 SKL 220 (237)
Q Consensus 218 ~~~ 220 (237)
|..
T Consensus 83 Ppg 85 (87)
T 2lq6_A 83 PPG 85 (87)
T ss_dssp SSS
T ss_pred CcC
Confidence 853
No 2
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-12 Score=91.06 Aligned_cols=54 Identities=39% Similarity=0.931 Sum_probs=49.1
Q ss_pred ccccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeecccccc
Q psy11049 37 ELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 37 ~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
...++.|.||.+.++.+.|.||.|| .|..+||+.|||+..+|+++|+|..|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4556789999999888899999999 69999999999999999999999999864
No 3
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.08 E-value=2.1e-11 Score=89.94 Aligned_cols=53 Identities=40% Similarity=0.965 Sum_probs=48.1
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeecccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
+.+..|.||.+.++.+.|.||.|| .|..+||+.|||+..+|++.|+|..|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCc
Confidence 345789999998878899999999 69999999999999999999999999864
No 4
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.90 E-value=5.3e-10 Score=77.73 Aligned_cols=52 Identities=31% Similarity=0.716 Sum_probs=45.1
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceeccccccccc----C-CCCeEeecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT----V-PVGSWFCRKCESQ 92 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~----~-p~~~W~C~~C~~~ 92 (237)
.+..|.||...++++.+.||+|| .|..+||+.||++.. + |++.|+|..|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34679999998877889999999 699999999999742 3 8899999999864
No 5
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.90 E-value=6.8e-10 Score=81.78 Aligned_cols=53 Identities=32% Similarity=0.613 Sum_probs=46.5
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc------cCCCCeEeecccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV------TVPVGSWFCRKCESQ 92 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~------~~p~~~W~C~~C~~~ 92 (237)
+++..|.||...++.+.|.||+|| .|..++|+.||+.. .+|++.|+|..|...
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 466789999998877789999999 69999999999965 278999999999864
No 6
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.81 E-value=6.4e-09 Score=79.20 Aligned_cols=76 Identities=30% Similarity=0.659 Sum_probs=62.2
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeecccccc--ccccccccccCCC------CCCC
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQ--EKSTKVRCELCPS------KDGA 109 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~--~~~~~~~C~LC~~------~~Ga 109 (237)
+.++.|.||.+ .++||.||+..|...+|..|+++..+|++.|+|..|.-. .+.....|.+||. ..|+
T Consensus 13 ~~~~~C~~C~~-----~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sfC~~c~~g~ 87 (107)
T 4gne_A 13 MHEDYCFQCGD-----GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFCKDHEKGA 87 (107)
T ss_dssp SSCSSCTTTCC-----CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCCEECSSSSCEECTTTCTTS
T ss_pred CCCCCCCcCCC-----CCcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCCCCCcCcCCCCcchhhhccCCc
Confidence 45578999995 467999994449999999999999999999999988632 2455689999995 3689
Q ss_pred ceeecCCch
Q psy11049 110 LKRTDNNGW 118 (237)
Q Consensus 110 lk~t~~~~W 118 (237)
|+.+....|
T Consensus 88 l~~~~~~~~ 96 (107)
T 4gne_A 88 LVPSALEGR 96 (107)
T ss_dssp CEECTTTTC
T ss_pred ceecCCCCc
Confidence 998888777
No 7
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.67 E-value=1e-08 Score=67.66 Aligned_cols=46 Identities=37% Similarity=0.961 Sum_probs=40.4
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceeccccc--ccccCCCCeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY--GIVTVPVGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY--Gi~~~p~~~W~C~~C~~ 91 (237)
.|.||...+ +.+.||.|| .|...+|..|+ ++..+|+++|+|..|..
T Consensus 2 ~C~vC~~~~--~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS--CCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC--CCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 599999876 467999999 69999999999 56788999999999985
No 8
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.58 E-value=2.5e-08 Score=68.41 Aligned_cols=50 Identities=30% Similarity=0.845 Sum_probs=42.0
Q ss_pred cccccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeecccccc
Q psy11049 36 QELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 36 ~~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~ 92 (237)
....+..|.||.+ .+.||.|| .|..++|..|++ +..+|++.|+|..|...
T Consensus 5 ~d~~~~~C~vC~~-----~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKD-----GGELLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCC-----CSSCBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCC-----CCCEEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3445578999986 35799999 699999999999 56789999999999864
No 9
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=2.1e-08 Score=74.33 Aligned_cols=52 Identities=33% Similarity=0.729 Sum_probs=44.0
Q ss_pred ccccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeecccccc
Q psy11049 37 ELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 37 ~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~ 92 (237)
-..+..|.||...+ +.+.||.|| .|...+|..|++ +..+|+++|+|..|...
T Consensus 13 ~~~~~~C~vC~~~~--~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGD--EDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSG--GGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcC--CCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34446899999875 367999999 699999999999 66789999999999863
No 10
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.49 E-value=7.2e-08 Score=67.16 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=39.5
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~ 92 (237)
....|.||.+ ++.||.|| .|..++|..|+. +..+|++.|+|..|+..
T Consensus 11 ~~~~C~vC~~-----~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGD-----GTDVLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSC-----CTTCEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCC-----CCeEEECC--CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3457999986 35699999 699999999996 56789999999999864
No 11
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.47 E-value=2e-07 Score=71.26 Aligned_cols=80 Identities=24% Similarity=0.720 Sum_probs=58.8
Q ss_pred ccccccCCC----CCCCCCceecCCCCccccccccccc-------------------CcccccCCCCCCCCCCeEEecCC
Q psy11049 7 GCCVCSDDS----GWAENPLVYCDGQGCNVAVHQELML-------------------GGCCVCSDDSGWAENPLVYCDGQ 63 (237)
Q Consensus 7 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~C~VC~~~~~~~~n~iv~Cdg~ 63 (237)
-|..|.+.. ....++++.|+ ++..+.|..-+. ..|.||.+.+ .+.++||.||
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~-~~~~~ll~Cd-- 81 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQG-KNADNMLFCD-- 81 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCC-CTTCCCEECT--
T ss_pred cccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcC-CCccceEEcC--
Confidence 477887653 23456777899 566666654221 1688888753 2467899999
Q ss_pred CcCceecccccc--cccCCCCeEeeccccc
Q psy11049 64 GCNVAVHQACYG--IVTVPVGSWFCRKCES 91 (237)
Q Consensus 64 ~C~~~VH~~CYG--i~~~p~~~W~C~~C~~ 91 (237)
.|..++|..|.. +..+|++.|+|..|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 699999999994 6678999999999973
No 12
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=7.7e-08 Score=64.72 Aligned_cols=46 Identities=33% Similarity=0.899 Sum_probs=39.8
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeeccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCES 91 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~ 91 (237)
.++.|.||.+. +.||.|| .|..++|..|++ +..+|++.|+|..|..
T Consensus 8 ~~~~C~vC~~~-----g~ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS-----GQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS-----SCCEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC-----CeEEEcC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34679999984 5899999 699999999999 6678999999999974
No 13
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.45 E-value=1e-07 Score=66.30 Aligned_cols=47 Identities=38% Similarity=0.953 Sum_probs=40.9
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~ 92 (237)
.++.|.||.+. +.||.|| .|..++|..|++ +..+|++.|+|..|...
T Consensus 7 ~~~~C~vC~~~-----g~ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG-----GELICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC-----SSCEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC-----CCEEEcC--CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45689999974 5799999 699999999999 66789999999999864
No 14
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.45 E-value=2.1e-07 Score=71.39 Aligned_cols=79 Identities=28% Similarity=0.719 Sum_probs=58.4
Q ss_pred cccccCCC-----CCCCCCceecCCCCccccccccccc-------------------CcccccCCCCCCCCCCeEEecCC
Q psy11049 8 CCVCSDDS-----GWAENPLVYCDGQGCNVAVHQELML-------------------GGCCVCSDDSGWAENPLVYCDGQ 63 (237)
Q Consensus 8 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~C~VC~~~~~~~~n~iv~Cdg~ 63 (237)
|.+|.+.. ....++++.|+ +++.+-|..-+. ..|.||...+ +++.||.||
T Consensus 4 C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd-- 77 (114)
T 2kwj_A 4 CDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE--NDDQLLFCD-- 77 (114)
T ss_dssp CSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT--TTTTEEECS--
T ss_pred CccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccC--CCCceEEcC--
Confidence 67776543 24456788898 455554443111 1588998865 578999999
Q ss_pred CcCceecccccc--cccCCCCeEeecccccc
Q psy11049 64 GCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 64 ~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~ 92 (237)
.|..++|..|.+ +..+|+++|+|..|...
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccch
Confidence 699999999999 66789999999999753
No 15
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.42 E-value=1.6e-07 Score=71.81 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=40.3
Q ss_pred cCcccccCCCCC----CCCCCeEEecCCCcCceecccccccc-----cCCCCeEeecccc
Q psy11049 40 LGGCCVCSDDSG----WAENPLVYCDGQGCNVAVHQACYGIV-----TVPVGSWFCRKCE 90 (237)
Q Consensus 40 ~~~C~VC~~~~~----~~~n~iv~Cdg~~C~~~VH~~CYGi~-----~~p~~~W~C~~C~ 90 (237)
...|.+|...+. .+.++||.|+ .|..++|.+|+++. .++.+.|+|..|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 357999998653 2467999999 69999999999863 4578899999998
No 16
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=64.31 Aligned_cols=46 Identities=35% Similarity=0.928 Sum_probs=40.2
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeecccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~ 92 (237)
++.|.||.+. +.||.|| .|..++|..|++ +..+|++.|+|..|...
T Consensus 5 ~~~C~vC~~~-----g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS-----GQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC-----SSCEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC-----CcEEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 4679999984 5899999 699999999999 66789999999999863
No 17
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=4e-07 Score=65.25 Aligned_cols=49 Identities=35% Similarity=0.822 Sum_probs=42.2
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCC-eEeeccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVG-SWFCRKCES 91 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~-~W~C~~C~~ 91 (237)
.+..|.||...+ +.+.||.|| .|..++|..|++ +..+|++ +|+|..|..
T Consensus 25 ~~c~C~vC~~~~--~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 25 HSCSCRVCGGKH--EPNMQLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSSCSSSCCCC--CSTTEEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCCcCcCCcC--CCCCEEEcC--CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 445799999865 578999999 699999999999 6678998 999999974
No 18
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.32 E-value=3e-07 Score=62.95 Aligned_cols=46 Identities=33% Similarity=0.806 Sum_probs=40.0
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceeccccccc--ccCCCCeEeeccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI--VTVPVGSWFCRKCES 91 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi--~~~p~~~W~C~~C~~ 91 (237)
.++.|.||.+. +.||.|| .|..++|..|++. ..+|++.|+|..|..
T Consensus 10 ~~~~C~vC~~~-----g~ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG-----GEIILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC-----SSEEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC-----CcEEECC--CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34689999973 5899999 6999999999997 468999999999985
No 19
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.31 E-value=6.9e-07 Score=67.99 Aligned_cols=76 Identities=21% Similarity=0.521 Sum_probs=59.0
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceeccccccccc--CCCCeEeeccccccccccccccccCCCCCC---Ccee
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT--VPVGSWFCRKCESQEKSTKVRCELCPSKDG---ALKR 112 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--~p~~~W~C~~C~~~~~~~~~~C~LC~~~~G---alk~ 112 (237)
..++.|.||.+.. +.++||.|+ .|..++|..|.++.. ++.+.|+|..|. .|.+|...+. +|.-
T Consensus 5 ~~~~~C~~C~~~g--~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~--------~C~~C~~~~~~~~ll~C 72 (111)
T 2ysm_A 5 SSGANCAVCDSPG--DLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK--------VCQNCKQSGEDSKMLVC 72 (111)
T ss_dssp CCCSCBTTTCCCC--CTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC--------CCTTTCCCSCCTTEEEC
T ss_pred CCCCCCcCCCCCC--CCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC--------cccccCccCCCCCeeEC
Confidence 3457899999976 346789999 699999999999864 356899999997 5888887654 3333
Q ss_pred ecCCchhhhhccc
Q psy11049 113 TDNNGWAHVVCAL 125 (237)
Q Consensus 113 t~~~~WvHv~Cal 125 (237)
..-.++.|+.|+-
T Consensus 73 d~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 73 DTCDKGYHTFCLQ 85 (111)
T ss_dssp SSSCCEEEGGGSS
T ss_pred CCCCcHHhHHhcC
Confidence 4457899999983
No 20
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.28 E-value=5.9e-07 Score=65.90 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=41.3
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceeccccc--ccccCCCCeEeecccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY--GIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY--Gi~~~p~~~W~C~~C~~~ 92 (237)
..++.|.||.+. +.||.|| .|..++|..|. ++..+|+++|+|..|...
T Consensus 23 ~n~~~C~vC~~~-----g~LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP-----GDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS-----SCCEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC-----CCEEECC--CCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 455789999985 4699999 69999999999 677889999999999863
No 21
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.27 E-value=4e-07 Score=64.07 Aligned_cols=46 Identities=28% Similarity=0.931 Sum_probs=40.3
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCC-eEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVG-SWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~-~W~C~~C~~ 91 (237)
.|.||...+ +++.||.|| .|..++|..|++ +..+|++ .|+|..|..
T Consensus 20 ~C~~C~~~~--~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ--DPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS--CGGGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC--CCCCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 588888765 578999999 699999999999 6788998 999999985
No 22
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.18 E-value=7.4e-07 Score=63.86 Aligned_cols=47 Identities=28% Similarity=0.899 Sum_probs=40.0
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCe-Eeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGS-WFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~-W~C~~C~~ 91 (237)
-.|.||...+ +.++||.|| .|..++|..|++ +..+|++. |+|..|+.
T Consensus 27 C~C~vC~~~~--d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 27 CACHLCGGRQ--DPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TSBTTTCCCS--CGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CcCCccCCCC--CCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3688888765 568999999 699999999999 56789988 99999975
No 23
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.13 E-value=9.8e-07 Score=67.65 Aligned_cols=75 Identities=28% Similarity=0.569 Sum_probs=57.2
Q ss_pred CcccccCCCCC-----CCCCCeEEecCCCcCceecccccccc-----cCCCCeEeeccccccccccccccccCCCC--CC
Q psy11049 41 GGCCVCSDDSG-----WAENPLVYCDGQGCNVAVHQACYGIV-----TVPVGSWFCRKCESQEKSTKVRCELCPSK--DG 108 (237)
Q Consensus 41 ~~C~VC~~~~~-----~~~n~iv~Cdg~~C~~~VH~~CYGi~-----~~p~~~W~C~~C~~~~~~~~~~C~LC~~~--~G 108 (237)
+.|.+|...+. .+..+||.|+ .|..++|.+|.++. .++++.|+|..|+ .|.+|... ++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~--------~C~~C~~~~~~~ 71 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK--------SCILCGTSENDD 71 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC--------CCTTTTCCTTTT
T ss_pred CcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC--------ccCcccccCCCC
Confidence 46999988653 2357999999 69999999999976 3577899999996 47888764 34
Q ss_pred Ccee-ecCCchhhhhccc
Q psy11049 109 ALKR-TDNNGWAHVVCAL 125 (237)
Q Consensus 109 alk~-t~~~~WvHv~Cal 125 (237)
.|.. ..-..+.|+.|+-
T Consensus 72 ~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 72 QLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp TEEECSSSCCEEETTTSS
T ss_pred ceEEcCCCCccccccccC
Confidence 4433 3346899999974
No 24
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.09 E-value=3.7e-06 Score=63.88 Aligned_cols=76 Identities=24% Similarity=0.693 Sum_probs=55.1
Q ss_pred cccccCCCCCCCCCceecCCCCcccccccccc---------------c-CcccccCCCCCCCCCCeEEecCCCcCceecc
Q psy11049 8 CCVCSDDSGWAENPLVYCDGQGCNVAVHQELM---------------L-GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQ 71 (237)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~ 71 (237)
|.+|.+.. +.++++.|+ +++.+-|..-+ + ..|.||...+ +++.||.|| .|..++|.
T Consensus 10 C~~C~~~g--~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd--~C~~~yH~ 81 (111)
T 2ysm_A 10 CAVCDSPG--DLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG--EDSKMLVCD--TCDKGYHT 81 (111)
T ss_dssp BTTTCCCC--CTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS--CCTTEEECS--SSCCEEEG
T ss_pred CcCCCCCC--CCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCCcccccCccC--CCCCeeECC--CCCcHHhH
Confidence 67777652 335567887 55554444310 0 1588888765 357899999 79999999
Q ss_pred cccc--cccCCCCeEeeccccc
Q psy11049 72 ACYG--IVTVPVGSWFCRKCES 91 (237)
Q Consensus 72 ~CYG--i~~~p~~~W~C~~C~~ 91 (237)
.|.. +..+|++.|+|..|..
T Consensus 82 ~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 82 FCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp GGSSSCCSSCCSSCCCCHHHHC
T ss_pred HhcCCccccCCCCCcCCcCCcC
Confidence 9998 5578999999999985
No 25
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.94 E-value=3.2e-06 Score=59.88 Aligned_cols=50 Identities=30% Similarity=0.753 Sum_probs=41.3
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccC--CCCeEeecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTV--PVGSWFCRKCESQ 92 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~--p~~~W~C~~C~~~ 92 (237)
....|.||...+ ++..||.|| .|...+|..|.|+... |.+.|+|..|...
T Consensus 17 ~~~~C~~C~~~~--~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPD--DGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCC--SSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCC--CCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 335799999875 366899999 6999999999998754 4579999999864
No 26
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.93 E-value=9.5e-06 Score=57.10 Aligned_cols=49 Identities=35% Similarity=0.870 Sum_probs=40.1
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcC-ceecccccccccCCCCeEeeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCN-VAVHQACYGIVTVPVGSWFCRKCESQE 93 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~-~~VH~~CYGi~~~p~~~W~C~~C~~~~ 93 (237)
..| ||...+. ..||.||+..|. -.+|..|.|+..+|.+.|+|..|+...
T Consensus 17 ~~C-~C~~~~~---g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 17 TYC-LCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCS-TTCCCSC---SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CEE-ECCCCCC---CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 457 8998753 579999933377 489999999999999999999998643
No 27
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.87 E-value=3.4e-06 Score=57.26 Aligned_cols=46 Identities=35% Similarity=0.858 Sum_probs=38.3
Q ss_pred cccccCCCCCCCCCCeEEecCCCcC-ceecccccccccCCCCeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCN-VAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~-~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
.| ||.+.+ .+.||.||+..|. -.+|..|.|+...|.+.|+|..|+.
T Consensus 11 yC-~C~~~~---~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVS---YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCC---CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 46 999875 3579999943377 4999999999999999999999975
No 28
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.85 E-value=3.7e-06 Score=57.28 Aligned_cols=46 Identities=37% Similarity=0.931 Sum_probs=38.0
Q ss_pred cccccCCCCCCCCCCeEEecCCCcC-ceecccccccccCCCCeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCN-VAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~-~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
.| ||...+ .+.||.||+..|. -.+|..|.|+..+|.+.|+|..|..
T Consensus 12 ~C-~C~~~~---~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcC---CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 46 999875 3679999942266 5899999999999999999999975
No 29
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.78 E-value=1.1e-05 Score=67.65 Aligned_cols=49 Identities=27% Similarity=0.743 Sum_probs=40.8
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeeccccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQE 93 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~~ 93 (237)
..++.|.||.++ +.||.|| .|..++|..|.+ +..+|++.|+|..|....
T Consensus 5 ~~~~~C~~C~~~-----g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG-----GDLLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC-----EEEEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC-----CceEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445789999874 3599999 599999999995 557899999999999753
No 30
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.76 E-value=1.6e-05 Score=65.55 Aligned_cols=48 Identities=27% Similarity=0.767 Sum_probs=40.2
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCCeEeeccccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQE 93 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~~W~C~~C~~~~ 93 (237)
.++.|.||.++ +.||.|| .|..++|..|.. +..+|++.|+|..|+...
T Consensus 3 ~~~~C~~C~~~-----g~ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG-----GELLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC-----SSCEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC-----CeeeecC--CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35689999964 4599999 699999999994 557899999999999753
No 31
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.74 E-value=1.1e-05 Score=59.41 Aligned_cols=48 Identities=35% Similarity=0.886 Sum_probs=38.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcC-ceecccccccccCCCCeEeecc-cccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCN-VAVHQACYGIVTVPVGSWFCRK-CESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~-~~VH~~CYGi~~~p~~~W~C~~-C~~~ 92 (237)
..| ||...+. +.||.||+..|. --+|..|.|+...|.+.|+|.. |...
T Consensus 27 ~yC-iC~~~~~---g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 27 VYC-FCRNVSY---GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp CCS-TTTCCCS---SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHH
T ss_pred cEE-EeCCCCC---CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcch
Confidence 457 9998653 479999942244 6899999999999999999999 9753
No 32
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.71 E-value=8.3e-06 Score=55.93 Aligned_cols=48 Identities=29% Similarity=0.804 Sum_probs=38.6
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcC-ceecccccccccCCCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCN-VAVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~-~~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
..| +|.+.+ ...||.||+..|. --+|..|.|+...|.+.|+|..|...
T Consensus 12 ~yC-~C~~~~---~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVS---YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred cEE-ECCCCC---CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 356 999864 3479999932255 78999999999999999999999853
No 33
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.70 E-value=2.1e-05 Score=67.00 Aligned_cols=48 Identities=27% Similarity=0.890 Sum_probs=37.4
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccc--cccCCCC-eEeeccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVG-SWFCRKCES 91 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG--i~~~p~~-~W~C~~C~~ 91 (237)
+..|.+|...+ +.+.||.|| .|..++|..|.+ +..+|++ +|+|..|..
T Consensus 174 ~c~C~vC~~~~--~~~~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQ--DPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCC--C--CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCC--CCCCeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 45799999865 478999999 599999999999 5678988 999999975
No 34
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.69 E-value=2.7e-05 Score=58.07 Aligned_cols=45 Identities=29% Similarity=0.887 Sum_probs=36.9
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccccc--CCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT--VPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--~p~~~W~C~~C~~ 91 (237)
..| ||...+ +++.||.|| .|...+|..|+|+.. +| +.|+|..|+.
T Consensus 29 vrC-iC~~~~--~~~~mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTH--DDGYMICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCS--CSSCEEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSS
T ss_pred EEe-ECCCcc--CCCcEEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcC
Confidence 357 898765 467899999 699999999999863 44 5799999974
No 35
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.69 E-value=2e-05 Score=58.07 Aligned_cols=48 Identities=35% Similarity=0.896 Sum_probs=39.4
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcC-ceecccccccccCCCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCN-VAVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~-~~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
..| ||...+ ...||.||+..|. --+|..|.|+...|.+.|+|..|...
T Consensus 37 ~yC-iC~~~~---~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 37 TYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp BCS-TTCCBC---CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred cEE-ECCCCC---CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 356 999875 3579999933376 57999999999999999999999864
No 36
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.57 E-value=2.2e-05 Score=65.21 Aligned_cols=46 Identities=30% Similarity=0.741 Sum_probs=39.6
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceeccccc--ccccCCCCeEeecccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACY--GIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CY--Gi~~~p~~~W~C~~C~~~ 92 (237)
++.|.||.+. +.+|.|| .|..++|..|. ++..+|.+.|+|..|...
T Consensus 2 ~~~C~~C~~~-----g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP-----GDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC-----SSCCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC-----CceeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999974 3689999 69999999999 567789999999999864
No 37
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.46 E-value=8e-05 Score=51.71 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=36.8
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCCC------CeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV------GSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~------~~W~C~~C~~ 91 (237)
.| ||...+ +...||.||+.+|..=+|..|+|+...+. +.|+|..|+.
T Consensus 12 ~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 46 897754 35689999955699999999999975432 4699999985
No 38
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.16 E-value=0.00033 Score=49.86 Aligned_cols=49 Identities=24% Similarity=0.678 Sum_probs=40.2
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccCC-------CCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP-------VGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p-------~~~W~C~~C~~~ 92 (237)
..| ||...+ +...||.||+..|..=+|..|.|+...+ .+.|+|..|+..
T Consensus 17 ~~C-iC~~~~--~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 17 VRC-VCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCC-SSCCCC--CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred EEe-ECCCcC--CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 467 899984 4569999996669999999999998654 268999999864
No 39
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.14 E-value=0.00011 Score=50.66 Aligned_cols=52 Identities=19% Similarity=0.631 Sum_probs=40.7
Q ss_pred ccccCcccccCCCCCCCCCCeEEecCCCcCceeccccccccc--------CCCCeEeecccc
Q psy11049 37 ELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT--------VPVGSWFCRKCE 90 (237)
Q Consensus 37 ~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--------~p~~~W~C~~C~ 90 (237)
.+....|.+|..+.. ++..+|.||| .|..=+|..|-|+.. .|...|+|+.|.
T Consensus 5 ~~~~~~C~~C~~p~~-~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVN-DDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCC-TTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccC-CCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 345568999999764 5678999995 699999999999974 367799999986
No 40
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.13 E-value=0.00036 Score=47.55 Aligned_cols=50 Identities=24% Similarity=0.655 Sum_probs=40.5
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCC---CCeEeecccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP---VGSWFCRKCESQ 92 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p---~~~W~C~~C~~~ 92 (237)
...|.+|..... ++..||.|| .|..=+|..|.|+...+ .+.|+|..|...
T Consensus 6 ~~~C~~C~~~~~-~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYA-ADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCC-SSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccC-CCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 357999998753 457899999 79999999999997543 368999999853
No 41
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.10 E-value=0.00029 Score=48.97 Aligned_cols=46 Identities=26% Similarity=0.680 Sum_probs=37.7
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccC-CCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTV-PVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~-p~~~W~C~~C~~ 91 (237)
..| ||...+ ++..||.|| .|..=+|..|.|+... ..+.|+|..|..
T Consensus 20 ~~C-iC~~~~--~~~~MIqCd--~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPF--AGRPMIECN--ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCC--TTCCEEECT--TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred eEe-ECCCcC--CCCCEEECC--CCCccccccccCcCcccCCCcEECCCCCC
Confidence 357 998865 367899999 7999999999999753 236899999975
No 42
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.00012 Score=51.18 Aligned_cols=45 Identities=31% Similarity=0.848 Sum_probs=37.2
Q ss_pred cccccCCCCCCCCCCeEEecCCCcC---ceecccccccccCCCCeEeecccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCN---VAVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~---~~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
.| +|...+ .+.||.|| +|+ .-+|..|.|+...|.+.|+|..|...
T Consensus 8 yC-~C~~~~---~g~MI~CD--~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 8 YC-ICNQVS---YGEMVGCD--NQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CS-TTSCCC---CSSEECCS--CTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred EE-EcCCCC---CCCEeEeC--CCCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 45 688764 34899999 564 78999999999999999999999853
No 43
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.89 E-value=0.00038 Score=45.69 Aligned_cols=47 Identities=28% Similarity=0.642 Sum_probs=37.5
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCC--CCeEeecccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP--VGSWFCRKCE 90 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p--~~~W~C~~C~ 90 (237)
.|.+|..+.. ++..+|.||| .|..=+|..|.|+...+ .+.|+|..|+
T Consensus 4 ~cc~C~~p~~-~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-DKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCC-TTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccC-CCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988763 4678999995 59999999999997543 3789999985
No 44
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.84 E-value=0.00087 Score=46.82 Aligned_cols=48 Identities=27% Similarity=0.688 Sum_probs=37.9
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccC--CCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTV--PVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~--p~~~W~C~~C~~~ 92 (237)
..| ||...+. ++..||.|| .|..=+|..|.|+... ..+.|+|..|...
T Consensus 17 ~~C-~C~~~~~-~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDD-DGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSC-CSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccC-CCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 468 7988642 345799999 7999999999999753 2478999999863
No 45
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.80 E-value=0.00052 Score=44.97 Aligned_cols=44 Identities=27% Similarity=0.751 Sum_probs=35.7
Q ss_pred cccCCCCCCCCCCeEEecCCCcCceecccccccccCC-CCeEeeccccc
Q psy11049 44 CVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP-VGSWFCRKCES 91 (237)
Q Consensus 44 ~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p-~~~W~C~~C~~ 91 (237)
.||...+ ++..||.|| +|..=+|..|.|+...+ .+.|+|..|+.
T Consensus 7 C~C~~~~--~~~~MI~Cd--~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPF--AGRPMIECN--ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBC--TTCCEEECT--TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcC--CCCCEEEcC--CCCccccccccCCCcccCCCcEECcCCCC
Confidence 4787754 367999999 79999999999997632 47899999974
No 46
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.76 E-value=0.00076 Score=48.00 Aligned_cols=47 Identities=23% Similarity=0.620 Sum_probs=38.3
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCC---CCeEeecccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP---VGSWFCRKCESQ 92 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p---~~~W~C~~C~~~ 92 (237)
.| +|...+. ++..||.|| .|..=+|..|.|+...+ .+.|+|..|...
T Consensus 14 ~C-~C~~~~d-~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 14 YC-LCRQPYN-VNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CS-TTSCSCC-SSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred EE-EcCCccC-CCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 56 9988753 367999999 79999999999997532 368999999864
No 47
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=49.84 Aligned_cols=50 Identities=20% Similarity=0.648 Sum_probs=41.2
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccccc--------CCCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT--------VPVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--------~p~~~W~C~~C~~~ 92 (237)
..|.+|..... +++.+|.||+ .|.-=+|..|-|+.. .|++.|+|..|...
T Consensus 4 ~~C~iC~~p~~-~~~~mi~Cdd-~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVN-DDQDAILCEA-SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCC-TTSCEEECTT-TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccC-CCCCEEEecC-CcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 56999999854 3567999983 699999999999974 36789999999864
No 48
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.26 E-value=0.0014 Score=46.24 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=38.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccCC-------CCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP-------VGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p-------~~~W~C~~C~~~ 92 (237)
..| +|...+. +..||.|| .|..=+|..|.|+...+ .+.|+|..|...
T Consensus 17 ~~C-~C~~~~~--~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHN--NRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCC--SSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccC--CCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 356 8998763 56899999 79999999999997532 478999999863
No 49
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.92 E-value=0.0031 Score=49.94 Aligned_cols=47 Identities=28% Similarity=0.594 Sum_probs=38.9
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc-------c--CCCCeEeeccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV-------T--VPVGSWFCRKCES 91 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~-------~--~p~~~W~C~~C~~ 91 (237)
..++.|.||.+ ++.||-|| .|.-++|..|.... . .|+++|.|..|..
T Consensus 61 g~~d~C~vC~~-----GG~LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAE-----GGNLICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCC-----CSSEEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCC-----CCcEEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35578999998 45799999 79999999999742 2 3789999999985
No 50
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=95.90 E-value=0.0021 Score=50.11 Aligned_cols=47 Identities=28% Similarity=0.636 Sum_probs=38.7
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc-------cC--CCCeEeeccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV-------TV--PVGSWFCRKCES 91 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~-------~~--p~~~W~C~~C~~ 91 (237)
..++.|.||.+ ++++|-|| .|.-++|..|.... .+ |+++|.|..|..
T Consensus 55 g~~~~C~vC~d-----GG~LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAE-----GGNLICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCC-----CSEEEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCC-----CCeeEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35568999998 46799999 79999999999732 33 789999999975
No 51
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.80 E-value=0.0022 Score=45.14 Aligned_cols=47 Identities=26% Similarity=0.594 Sum_probs=37.4
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCCC---CeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV---GSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~---~~W~C~~C~~ 91 (237)
.-.||...+ .++..||.|| .|..=+|..|.|+...+. +.|+|..|..
T Consensus 11 ~yCiC~~~~-~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRLPY-DVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTEEC-CTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCCcC-CCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCcc
Confidence 345888754 2367899999 799999999999986542 6799999985
No 52
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=95.59 E-value=0.0015 Score=52.83 Aligned_cols=48 Identities=25% Similarity=0.648 Sum_probs=39.0
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccC---CCCeEeecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTV---PVGSWFCRKCESQ 92 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~---p~~~W~C~~C~~~ 92 (237)
..| +|..... ++..+|.|| .|..-+|..|.|+... +.+.|+|..|...
T Consensus 9 ~~C-~C~~~~~-~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPED-ESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECC-TTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCC-CCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 468 9998653 466899999 6999999999998643 3578999999864
No 53
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.32 E-value=0.051 Score=38.29 Aligned_cols=34 Identities=24% Similarity=0.632 Sum_probs=28.1
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
....| +|++.. ..|.+|+|..+.|..+||..|.-
T Consensus 15 ~~~~C-iC~~~~------~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 15 IKVRC-VCGNSL------ETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCCC-SSCCCC------CCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCEEe-ECCCcC------CCCCEEEECCccCCccccCEEEc
Confidence 45678 799862 25899999988999999999984
No 54
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.60 E-value=0.027 Score=37.61 Aligned_cols=52 Identities=19% Similarity=0.582 Sum_probs=36.6
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVRK 223 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~~ 223 (237)
...|.+|++. |..|.|. .|.++||..|....-..+ +. -.-||+....+..++
T Consensus 5 ~~~C~vC~~~---------g~ll~Cd--~C~~~fH~~Cl~ppl~~~-p~--------g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 5 EDFCSVCRKS---------GQLLMCD--TCSRVYHLDCLDPPLKTI-PK--------GMWICPRCQDQMLKK 56 (60)
T ss_dssp CSSCTTTCCC---------SSCEECS--SSSCEECGGGSSSCCSSC-CC--------SCCCCHHHHHHHHHT
T ss_pred CCCCcCCCCC---------CcEEEcC--CCCcCEECCcCCCCcCCC-CC--------CceEChhccChhhch
Confidence 4679999975 7899999 799999999987321111 11 136899887765543
No 55
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=93.21 E-value=0.026 Score=46.39 Aligned_cols=49 Identities=22% Similarity=0.565 Sum_probs=37.8
Q ss_pred cccccCCCCCCC--CCCeEEecCCCcCceeccccccccc--------CCC-CeEeecccccc
Q psy11049 42 GCCVCSDDSGWA--ENPLVYCDGQGCNVAVHQACYGIVT--------VPV-GSWFCRKCESQ 92 (237)
Q Consensus 42 ~C~VC~~~~~~~--~n~iv~Cdg~~C~~~VH~~CYGi~~--------~p~-~~W~C~~C~~~ 92 (237)
.|.||......+ +..||.|| .|..=+|..|-|+.. +|+ ..|+|..|...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 599998876543 24699999 699999999999964 132 37999999863
No 56
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=93.15 E-value=0.041 Score=37.71 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=25.8
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCA 190 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA 190 (237)
...| +|+++. ..|.+|+|....|..+||..|.
T Consensus 10 ~v~C-~C~~~~------~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 10 KVRC-ICSSTM------VNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp EECC-TTCCCS------CCSCEEECSCTTTCEEEETTTS
T ss_pred CEEe-ECCCCc------CCCCEEEECCCCCCCeEchhhC
Confidence 4567 798752 3489999997789999999997
No 57
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.97 E-value=0.05 Score=36.61 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=35.6
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
...|.+|+++. ...+.+|+|. .|..+||..|+-... .... .....+|+.-..+..
T Consensus 6 ~~~C~~C~~~~-----~~~~~mI~Cd--~C~~WfH~~Cvgl~~---~~~~-----~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 6 SGQCGACGESY-----AADEFWICCD--LCEMWFHGKCVKITP---ARAE-----HIKQYKCPSCSNKSG 60 (64)
T ss_dssp CCCCSSSCCCC-----CSSSCEEECS--SSCCEEETTTTTCCT---TGGG-----GCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCcc-----CCCCCEEEcc--CCCCCCCccccCcCh---hHhc-----CCCcEECCCCcCcCC
Confidence 45788999862 1137899999 799999999984321 1100 012467877766544
No 58
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=92.29 E-value=0.066 Score=35.78 Aligned_cols=32 Identities=28% Similarity=0.958 Sum_probs=26.1
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~ 191 (237)
...| +|++.. .|.+|+|...+|. .+||..|.-
T Consensus 9 ~~yC-~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 9 PTYC-LCHQVS-------YGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp CEET-TTTEEC-------CSEEEECSCTTCSSCEEETGGGT
T ss_pred CcEE-ECCCCC-------CCCeeEeeCCCCCCCCEecccCC
Confidence 4566 899863 3899999977798 699999986
No 59
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.28 E-value=0.11 Score=36.52 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=25.2
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...| +|+++. ...+.+|+|. .|..+||..|+-
T Consensus 12 ~~~C-~C~~~~-----d~~~~MIqCd--~C~~WfH~~Cvg 43 (79)
T 1wep_A 12 PVYC-LCRQPY-----NVNHFMIECG--LCQDWFHGSCVG 43 (79)
T ss_dssp CCCS-TTSCSC-----CSSSCEEEBT--TTCCEEEHHHHT
T ss_pred ccEE-EcCCcc-----CCCCceEEcC--CCCCcEEeeecC
Confidence 4567 898862 1248999999 699999999985
No 60
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=92.16 E-value=0.069 Score=36.06 Aligned_cols=33 Identities=24% Similarity=0.830 Sum_probs=26.4
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhhc
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQT 192 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~~ 192 (237)
...| +|++.. .|.+|+|....|. .+||..|.-.
T Consensus 11 ~~yC-~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 11 PTYC-LCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp CEET-TTTEEC-------CSEEEECSCTTCSSCEEETGGGTC
T ss_pred CcEE-ECCCCC-------CCCeeeeeCCCCCcccEecccCCc
Confidence 3567 899853 4899999976688 9999999863
No 61
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=91.76 E-value=0.099 Score=39.26 Aligned_cols=31 Identities=29% Similarity=0.974 Sum_probs=26.9
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...|.+|+.. |-+|.|....|..+||..|.-
T Consensus 15 ~~~C~~C~~~---------G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGDG---------GELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCCC---------SEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCCC---------CcEeEECCCCCCcccccccCc
Confidence 4679999854 799999988899999999985
No 62
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=91.61 E-value=0.14 Score=35.43 Aligned_cols=32 Identities=28% Similarity=0.945 Sum_probs=26.4
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~ 191 (237)
...| +|++.. .|.+|+|....|. .+||..|.-
T Consensus 16 ~~~C-~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 16 PTYC-LCHQVS-------YGEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp CCCS-TTCCCS-------CSSEECCSCSSCSCCCEETTTTT
T ss_pred CCEE-ECCCCC-------CCCEeEeeCCCCCCccEecccCC
Confidence 4678 799863 3899999977798 799999986
No 63
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=91.14 E-value=0.1 Score=34.85 Aligned_cols=32 Identities=28% Similarity=0.945 Sum_probs=25.8
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~ 191 (237)
...| +|++.. .|.+|+|...+|. .+||..|.-
T Consensus 10 ~~~C-~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 10 PTYC-LCHQVS-------YGEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp CEET-TTTEEC-------CSEEEECSCTTCSSCEEETGGGT
T ss_pred CCEE-ECCCcC-------CCCEEEeCCCCCCCceEehhcCC
Confidence 3556 899863 3899999976688 899999986
No 64
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.09 E-value=0.11 Score=36.00 Aligned_cols=52 Identities=19% Similarity=0.425 Sum_probs=35.1
Q ss_pred cceeeecCcCCcCCCcCccc-eeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 152 NKVCYICEENGHKASRSKFG-ACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G-~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
...|.+|++.. .| .+|+|. .|..+||..|+-..-.... ....||+.=..+..
T Consensus 18 ~~~C~~C~~~~-------~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~---------~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPD-------DGSPMIGCD--DCDDWYHWPCVGIMAAPPE---------EMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCC-------SSCCEEECS--SSSSEEEHHHHTCSSCCCS---------SSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCC-------CCCCEEEcC--CCCcccccccCCCCccCCC---------CCCEEChhccCchh
Confidence 45799999873 24 699999 7999999999853221110 12368887766544
No 65
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.62 E-value=0.17 Score=35.17 Aligned_cols=31 Identities=26% Similarity=0.670 Sum_probs=24.8
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...| +|+++. ..+.+|+|. .|..+||..|+-
T Consensus 16 ~~~C-~C~~~~------~~~~MI~Cd--~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPH------NNRFMICCD--RCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCC------CSSCEEECS--SSCCEEEHHHHS
T ss_pred CCEE-ECCCcc------CCCCEEEeC--CCCCcEeCeEEc
Confidence 4667 899874 125899999 799999999984
No 66
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.30 E-value=0.16 Score=37.04 Aligned_cols=32 Identities=28% Similarity=0.945 Sum_probs=26.5
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~ 191 (237)
...| +|++.. .|.+|+|...+|. .+||..|.-
T Consensus 36 ~~yC-iC~~~~-------~g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 36 PTYC-LCHQVS-------YGEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CBCS-TTCCBC-------CSCCCCCSCSSCSCCCCCSTTTT
T ss_pred CcEE-ECCCCC-------CCCEeEecCCCCCCCCEecccCC
Confidence 4677 999863 4899999977798 799999986
No 67
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.04 E-value=0.14 Score=33.54 Aligned_cols=31 Identities=26% Similarity=0.948 Sum_probs=26.3
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
....|.+|++. |..|.|. .|.++||..|...
T Consensus 8 ~~~~C~vC~~~---------g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 8 HEDFCSVCRKS---------GQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp SCCSCSSSCCS---------SCCEECS--SSSCEECSSSSSS
T ss_pred CCCCCccCCCC---------CeEEEcC--CCCcceECccCCC
Confidence 35679999975 6889999 7999999999873
No 68
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.00 E-value=0.16 Score=34.45 Aligned_cols=31 Identities=29% Similarity=0.953 Sum_probs=26.3
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
....|.+|+.. |..|.|. .|..+||..|...
T Consensus 7 ~~~~C~vC~~~---------g~ll~CD--~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 7 NEDECAVCRDG---------GELICCD--GCPRAFHLACLSP 37 (66)
T ss_dssp CCCSBSSSSCC---------SSCEECS--SCCCEECTTTSSS
T ss_pred CCCCCccCCCC---------CCEEEcC--CCChhhcccccCC
Confidence 45689999975 7889999 7999999999863
No 69
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.98 E-value=0.2 Score=33.52 Aligned_cols=31 Identities=23% Similarity=0.929 Sum_probs=26.5
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
....|.+|++. |..|.|. .|..+||..|...
T Consensus 10 ~~~~C~vC~~~---------g~ll~CD--~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG---------GEIILCD--TCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC---------SSEEECS--SSSCEEEHHHHCT
T ss_pred CCCCCccCCCC---------CcEEECC--CCChhhhhhccCC
Confidence 35679999975 7899999 7999999999874
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.58 E-value=0.22 Score=33.97 Aligned_cols=29 Identities=24% Similarity=0.707 Sum_probs=24.7
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
..+|.+|+.. |..|.|. .|..+||..|..
T Consensus 12 ~~~C~vC~~~---------~~ll~Cd--~C~~~~H~~Cl~ 40 (66)
T 2lri_C 12 GARCGVCGDG---------TDVLRCT--HCAAAFHWRCHF 40 (66)
T ss_dssp TCCCTTTSCC---------TTCEECS--SSCCEECHHHHC
T ss_pred CCCcCCCCCC---------CeEEECC--CCCCceecccCC
Confidence 3569999875 6789998 799999999985
No 71
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.49 E-value=0.23 Score=34.02 Aligned_cols=32 Identities=25% Similarity=0.570 Sum_probs=25.2
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
...| +|+++. ..+.+|+|. .|..+||..|+-.
T Consensus 19 ~~~C-iC~~~~------~~~~MIqCd--~C~~WfH~~Cvgi 50 (68)
T 3o70_A 19 LVTC-FCMKPF------AGRPMIECN--ECHTWIHLSCAKI 50 (68)
T ss_dssp CCCS-TTCCCC------TTCCEEECT--TTCCEEETTTTTC
T ss_pred ceEe-ECCCcC------CCCCEEECC--CCCccccccccCc
Confidence 4678 999873 124799999 6999999999853
No 72
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=89.46 E-value=0.18 Score=32.57 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=24.0
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
.|.+|+++. ...+.+|+|.. .|..+||..|+-
T Consensus 4 ~cc~C~~p~-----~~~~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPC-----KDKVDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCC-----CTTCCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCcc-----CCCCcEEEeCC-CCCccCcccccC
Confidence 366788763 11357899996 799999999974
No 73
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.44 E-value=0.84 Score=32.77 Aligned_cols=67 Identities=21% Similarity=0.524 Sum_probs=44.7
Q ss_pred CCCCCCCCCceecCCCCcccccccccccCccc--ccCCCCCCC------CCCeEEecCCCcCce-ecccccccccCCCCe
Q psy11049 13 DDSGWAENPLVYCDGQGCNVAVHQELMLGGCC--VCSDDSGWA------ENPLVYCDGQGCNVA-VHQACYGIVTVPVGS 83 (237)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--VC~~~~~~~------~n~iv~Cdg~~C~~~-VH~~CYGi~~~p~~~ 83 (237)
.+.+|+-+|.+|-+ +++.. ..|+ +|.-..+.+ .-+||.|. .|+.. +|..|..+.. ....
T Consensus 3 rDAsWEle~nAy~e-------L~~R~--~~CdA~~Clc~~GR~~~~~~~~W~L~lC~--~Cgs~gtH~~Cs~l~~-~~~~ 70 (85)
T 1weq_A 3 SGSSGELEPGAFSE-------LYQRY--RHCDAPICLYEQGRDSFEDEGRWRLILCA--TCGSHGTHRDCSSLRP-NSKK 70 (85)
T ss_dssp CCCCCCCCTTCCCC-------CSSCC--CCCCCSCCCSTTCSSCCBSSSTTBCEECS--SSCCCEECSGGGTCCT-TCSC
T ss_pred CCCccccCcCHHHH-------HhhCc--CccCccccCCCCCcccccCCCCEEEEeCc--ccCCchhHHHHhCCcC-CCCC
Confidence 56889878887555 22222 2343 344433322 46899998 78764 9999988643 4678
Q ss_pred Eeeccccc
Q psy11049 84 WFCRKCES 91 (237)
Q Consensus 84 W~C~~C~~ 91 (237)
|.|..|..
T Consensus 71 weC~~C~~ 78 (85)
T 1weq_A 71 WECNECLP 78 (85)
T ss_dssp CCCTTTSC
T ss_pred EECCcCcc
Confidence 99999985
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.02 E-value=0.2 Score=32.00 Aligned_cols=31 Identities=26% Similarity=0.878 Sum_probs=24.5
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
.|.+|++.+ ..+..|.|. .|.++||..|...
T Consensus 2 ~C~vC~~~~------~~~~ll~Cd--~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKG------EDDKLILCD--ECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSS------CCSCCEECT--TTCCEECHHHHCT
T ss_pred CCCCCCCCC------CCCCEEECC--CCChhhCcccCCC
Confidence 488898763 135789999 7999999999863
No 75
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=88.99 E-value=0.19 Score=37.37 Aligned_cols=33 Identities=21% Similarity=0.615 Sum_probs=26.0
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
..|.+|+++- ...+..|+|. ..|..+||..|.-
T Consensus 4 ~~C~iC~~p~-----~~~~~mi~Cd-d~C~~WfH~~CVg 36 (105)
T 2xb1_A 4 YPCGACRSEV-----NDDQDAILCE-ASCQKWFHRECTG 36 (105)
T ss_dssp CBCTTTCSBC-----CTTSCEEECT-TTTCCEEEGGGTT
T ss_pred CCCCCCCCcc-----CCCCCEEEec-CCcccccccccCC
Confidence 4699999872 1137899998 5899999999973
No 76
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.92 E-value=0.2 Score=34.54 Aligned_cols=34 Identities=24% Similarity=0.643 Sum_probs=25.8
Q ss_pred cccceeeecCcCCcCCCcCccc-eeeecCCCCCCceeehhhhhc
Q psy11049 150 RFNKVCYICEENGHKASRSKFG-ACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 150 r~~~~C~~C~~~g~~~~~~~~G-~~i~C~~~~C~~~FH~~CA~~ 192 (237)
.....| +|+++. ..| .+|+|. .|..+||..|+-.
T Consensus 14 ~~~~~C-~C~~~~------~~g~~mI~Cd--~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 14 NWKVDC-KCGTKD------DDGERMLACD--GCGVWHHTRCIGI 48 (72)
T ss_dssp SSEECC-TTCCCS------CCSSCEEECS--SSCEEEETTTTTC
T ss_pred CcceEe-eCCCcc------CCCCcEEECC--CCCCccCCeeecc
Confidence 345778 699862 125 699999 7999999999853
No 77
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.50 E-value=0.17 Score=33.84 Aligned_cols=31 Identities=23% Similarity=0.894 Sum_probs=26.0
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
....|.+|+.. |..|.|. .|.++||..|...
T Consensus 8 ~~~~C~vC~~~---------g~ll~Cd--~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKDG---------GELLCCD--TCPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCCC---------SSCBCCS--SSCCCBCSSSSSS
T ss_pred CCCcCCCCCCC---------CCEEEcC--CCCHHHcccccCC
Confidence 45679999875 7889999 6999999999863
No 78
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.41 E-value=0.23 Score=36.42 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=24.2
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
..| +|+... ..|.+|+|. .|..+||..|.-
T Consensus 29 vrC-iC~~~~------~~~~mi~Cd--~C~~w~H~~C~~ 58 (98)
T 2lv9_A 29 TRC-ICGFTH------DDGYMICCD--KCSVWQHIDCMG 58 (98)
T ss_dssp CCC-TTSCCS------CSSCEEEBT--TTCBEEETTTTT
T ss_pred EEe-ECCCcc------CCCcEEEcC--CCCCcCcCcCCC
Confidence 457 788763 238999998 799999999984
No 79
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=88.40 E-value=0.25 Score=35.92 Aligned_cols=32 Identities=28% Similarity=0.908 Sum_probs=25.7
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCC-ceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCR-QQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~-~~FH~~CA~ 191 (237)
...| +|++.. .|.+|.|...+|. .+||..|.-
T Consensus 26 ~~yC-iC~~~~-------~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 26 EVYC-FCRNVS-------YGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp SCCS-TTTCCC-------SSSEECCCSSSCSCSCEETTTSS
T ss_pred CcEE-EeCCCC-------CCCEEEecCCCCccccCcCccCC
Confidence 5678 899864 4789999976677 899999984
No 80
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.02 E-value=0.3 Score=33.22 Aligned_cols=34 Identities=24% Similarity=0.612 Sum_probs=25.7
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...|.+|+++. ......|+|.. .|..+||..|.-
T Consensus 8 ~~~C~~C~~p~-----~~~~~mI~CD~-~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEV-----NDDQDAILCEA-SCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBC-----CTTSCEEEBTT-TTCCEEEHHHHT
T ss_pred cCcCccCCCcc-----CCCCCeEeccc-CccccCchhccC
Confidence 35799999873 11247899994 899999999973
No 81
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=87.54 E-value=0.27 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.571 Sum_probs=22.0
Q ss_pred ecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 157 ICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 157 ~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
+|+++. ..+.+|+|. .|..+||..|+-.
T Consensus 8 ~C~~~~------~~~~MI~Cd--~C~~W~H~~Cvgi 35 (52)
T 3o7a_A 8 FCMKPF------AGRPMIECN--ECHTWIHLSCAKI 35 (52)
T ss_dssp TTCCBC------TTCCEEECT--TTCCEEETTTTTC
T ss_pred EeCCcC------CCCCEEEcC--CCCccccccccCC
Confidence 687763 125999999 6999999999853
No 82
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=87.49 E-value=0.11 Score=48.92 Aligned_cols=45 Identities=24% Similarity=0.652 Sum_probs=36.9
Q ss_pred cccCCCCCCCCCCeEEecCCCcCceecccccccccCCC---CeEeeccccc
Q psy11049 44 CVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV---GSWFCRKCES 91 (237)
Q Consensus 44 ~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~---~~W~C~~C~~ 91 (237)
++|...+. ++..||.|| .|..=+|..|.|+...+. +.|+|..|..
T Consensus 40 C~C~~~~d-~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 40 CVCRQPYD-VNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTTEECC-TTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred EeCCCcCC-CCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 49987652 367899999 799999999999986542 6799999984
No 83
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.37 E-value=0.25 Score=39.58 Aligned_cols=33 Identities=21% Similarity=0.583 Sum_probs=26.0
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
....| +|+++. ...|..|+|. .|..+||..|.-
T Consensus 7 ~~~~C-~C~~~~-----~~~~~mi~Cd--~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 7 TKLYC-ICKTPE-----DESKFYIGCD--RCQNWYHGRCVG 39 (174)
T ss_dssp CCEET-TTTEEC-----CTTSCEEECT--TTCCEEEHHHHT
T ss_pred CCcEe-eCCCCC-----CCCCCEeECC--CCCchhChhhcC
Confidence 35678 999863 2247899999 799999999983
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.12 E-value=0.58 Score=33.80 Aligned_cols=31 Identities=32% Similarity=0.884 Sum_probs=26.3
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
....|.+|++. |..+.|. .|...||..|...
T Consensus 24 n~~~C~vC~~~---------g~LL~CD--~C~~~fH~~Cl~P 54 (88)
T 1fp0_A 24 SATICRVCQKP---------GDLVMCN--QCEFCFHLDCHLP 54 (88)
T ss_dssp SSSCCSSSCSS---------SCCEECT--TSSCEECTTSSST
T ss_pred CCCcCcCcCCC---------CCEEECC--CCCCceecccCCC
Confidence 45689999975 6889998 8999999999853
No 85
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=85.76 E-value=0.41 Score=45.26 Aligned_cols=37 Identities=27% Similarity=0.659 Sum_probs=31.5
Q ss_pred CCCCeEEecCCCcCceecccccccccCC---CCeEeeccccc
Q psy11049 53 AENPLVYCDGQGCNVAVHQACYGIVTVP---VGSWFCRKCES 91 (237)
Q Consensus 53 ~~n~iv~Cdg~~C~~~VH~~CYGi~~~p---~~~W~C~~C~~ 91 (237)
++..+|.|| .|.-=+|-.|-|+...+ .+.|+|..|..
T Consensus 54 ~~~~mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 54 NDFQWIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp STTSEEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred cCCCEEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 467899999 69999999999998643 36899999985
No 86
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=83.82 E-value=0.12 Score=48.12 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=37.8
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCC---CCeEeeccccc
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP---VGSWFCRKCES 91 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p---~~~W~C~~C~~ 91 (237)
..++|...+ .++..||.|| .|..=+|..|.|+...+ .+.|+|..|..
T Consensus 6 ~yCiC~~~~-d~~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 6 VYCLCRLPY-DVTRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp EETTTTEEC-CTTSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eEEeCCCcC-CCCCCeEEcC--CCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 356888764 2468999999 79999999999997543 26899999975
No 87
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=83.52 E-value=0.52 Score=32.65 Aligned_cols=31 Identities=23% Similarity=0.616 Sum_probs=23.8
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
..| +|+++. ...+.+|+|. .|..+||..|.-
T Consensus 11 ~yC-iC~~~~-----~~~~~MI~Cd--~C~~WfH~~Cvg 41 (75)
T 3kqi_A 11 VYC-VCRLPY-----DVTRFMIECD--ACKDWFHGSCVG 41 (75)
T ss_dssp EET-TTTEEC-----CTTSCEEECT--TTCCEEEHHHHT
T ss_pred eEE-ECCCcC-----CCCCCEEEcC--CCCCCEeccccc
Confidence 444 788762 1236899999 699999999985
No 88
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=81.72 E-value=0.98 Score=36.76 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=30.6
Q ss_pred ecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccch
Q psy11049 157 ICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYS 218 (237)
Q Consensus 157 ~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~ 218 (237)
+|+.++ ...-..++|. .|.++||..|.+...-.+...+ ..|.+.|..=++
T Consensus 9 YCG~~~-----~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~lp~~-----~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGR-----QLGEVELQCG--ICTKWFTADTFGIDTSSCLPFM-----TNYSFHCNVCHH 58 (177)
T ss_dssp --CTTC-----CTTSCEEECT--TTCCEEEGGGGTCCCTTCCTTC-----CSEEEECTTTST
T ss_pred EcCCCC-----CCCceeEeec--cccceecHHHhcccccCccccc-----eeEEEEccccCC
Confidence 788875 3445789999 7999999999974331111111 246677775443
No 89
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.68 E-value=0.79 Score=31.44 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=23.8
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
.|.+|++.. ..|..|.|. .|.++||..|..
T Consensus 20 ~C~~C~~~~------~~~~ll~CD--~C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQ------DPDKQLMCD--ECDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCS------CGGGEEECT--TTCCEEEGGGSS
T ss_pred CCcCCCCcC------CCCCEEEcC--CCCCceecccCC
Confidence 567888642 237889999 799999999986
No 90
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=81.41 E-value=1.1 Score=33.34 Aligned_cols=37 Identities=32% Similarity=0.641 Sum_probs=28.3
Q ss_pred CCCeEEecCCCcCceecccccccccC------CCCeEeecccccc
Q psy11049 54 ENPLVYCDGQGCNVAVHQACYGIVTV------PVGSWFCRKCESQ 92 (237)
Q Consensus 54 ~n~iv~Cdg~~C~~~VH~~CYGi~~~------p~~~W~C~~C~~~ 92 (237)
+..||+|+ .|.-.||..|-++... ..+.|.|..|...
T Consensus 72 ~~~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 55699999 8999999999987531 2346999999854
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.22 E-value=0.66 Score=33.56 Aligned_cols=55 Identities=15% Similarity=0.408 Sum_probs=36.1
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVRK 223 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~~ 223 (237)
...|.+|++.+ ..+.+|.|. .|..+||..|....-..+ +. -.-||+....+...+
T Consensus 16 ~~~C~vC~~~~------~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~-P~--------g~W~C~~C~~~~~~~ 70 (92)
T 2e6r_A 16 SYICQVCSRGD------EDDKLLFCD--GCDDNYHIFCLLPPLPEI-PR--------GIWRCPKCILAECKQ 70 (92)
T ss_dssp CCCCSSSCCSG------GGGGCEECT--TTCCEECSSSSSSCCSSC-CS--------SCCCCHHHHHHHHSC
T ss_pred CCCCccCCCcC------CCCCEEEcC--CCCchhccccCCCCcccC-CC--------CCcCCccCcCccccC
Confidence 35799999863 124689999 799999999986321111 11 136888887765433
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.09 E-value=1.1 Score=29.96 Aligned_cols=35 Identities=29% Similarity=0.703 Sum_probs=26.5
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
...|.+|+... ....+..|.|. .|..+||..|...
T Consensus 6 ~~~C~vC~~~~----~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEY----SEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCC----CBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCC----CCCCCCEEECC--CCChHHHhhhCCC
Confidence 46799998751 01127889999 8999999999764
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.99 E-value=1.1 Score=30.78 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=27.5
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcC
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQ 193 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~ 193 (237)
....|.+|++.+ ....+..|.|. .|..+||..|.-..
T Consensus 15 ~~~~C~vC~~~~----s~~~~~ll~CD--~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 15 EDAVCSICMDGE----SQNSNVILFCD--MCNLAVHQECYGVP 51 (71)
T ss_dssp SSCSCSSSCCCC----CCSSSCEEECS--SSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCC----CCCCCCEEECC--CCCCccccccCCCC
Confidence 356799998752 01135889999 89999999998644
No 94
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.30 E-value=0.99 Score=30.99 Aligned_cols=32 Identities=28% Similarity=0.803 Sum_probs=24.7
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCC-Cceeehhhhhc
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGC-RQQFHVTCAQT 192 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C-~~~FH~~CA~~ 192 (237)
..| +|++.. .|.+|+|...+| ..+||..|.-.
T Consensus 7 ~yC-~C~~~~-------~g~MI~CD~cdC~~~WfH~~Cvgl 39 (70)
T 1x4i_A 7 GYC-ICNQVS-------YGEMVGCDNQDCPIEWFHYGCVGL 39 (70)
T ss_dssp CCS-TTSCCC-------CSSEECCSCTTCSCCCEEHHHHTC
T ss_pred eEE-EcCCCC-------CCCEeEeCCCCCCccCCccccccc
Confidence 456 488753 589999997667 48999999864
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.10 E-value=1 Score=32.34 Aligned_cols=38 Identities=24% Similarity=0.585 Sum_probs=30.9
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEE
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCE 198 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~ 198 (237)
...|.+|+.-. .+..+.|. -|.+.||..|.++.|..-.
T Consensus 15 D~~C~VC~~~t-------~~~l~pCR--vC~RvfH~~CL~r~gy~~~ 52 (89)
T 1wil_A 15 DEMCDVCEVWT-------AESLFPCR--VCTRVFHDGCLRRMGYIQG 52 (89)
T ss_dssp SCCCTTTCCCC-------SSCCSSCS--SSSSCCCHHHHHHHTSCCC
T ss_pred CcccCcccccc-------ccceeccc--cccccccHhhccccccccc
Confidence 46799999643 47888998 6999999999999886654
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.87 E-value=0.98 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.752 Sum_probs=24.3
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
.|.+|++.. ..+..|.|. .|...||..|..
T Consensus 28 ~C~vC~~~~------~~~~ll~CD--~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKH------EPNMQLLCD--ECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCC------CSTTEEECS--SSCCEEETTSSS
T ss_pred CCcCcCCcC------CCCCEEEcC--CCCccccccccC
Confidence 688898742 137889998 899999999986
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=76.36 E-value=1.7 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=27.3
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcC
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQ 193 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~ 193 (237)
....|.+|+..+. ...+..|.|. .|..+||..|.-..
T Consensus 24 ~~~~C~vC~~~~s----~~~~~ll~CD--~C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 24 EDAVCSICMDGES----QNSNVILFCD--MCNLAVHQECYGVP 60 (88)
T ss_dssp CCCCCSSCCSSSS----CSEEEEEECS--SSCCCCCHHHHTCS
T ss_pred CCCcCCcCCCCCC----CCCCCEEECC--CCCchhhcccCCCC
Confidence 3578999997520 0124889999 79999999998644
No 98
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=76.21 E-value=1.8 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=26.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.--.-..+-+.|. .|++.+|..|...
T Consensus 12 t~C~~C~~~l~g~~~qg~~C~--~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 12 TFCDHCGSLLWGLVKQGLKCE--DCGMNVHHKCREK 45 (50)
T ss_dssp CBCTTTCCBCCSSSSCEEEET--TTCCEECHHHHTT
T ss_pred CCcCCCCceeeccCCccCEeC--CCCCeECHHHhhh
Confidence 469999875422356889999 7999999999753
No 99
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=75.48 E-value=1.5 Score=34.71 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=41.0
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeecccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQ 92 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~ 92 (237)
...|.+|......-.|.-..|. .|...|=+.|- +..-++..|+|..|...
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~--~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCL--ECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECT--TTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCC--CCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4679999998777788889998 69999999996 33335678999999863
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.46 E-value=1.5 Score=31.38 Aligned_cols=34 Identities=18% Similarity=0.578 Sum_probs=25.8
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...|.+|++.. ....+..|.|. .|...||..|..
T Consensus 16 ~~~C~vC~~~~----~~~~~~ll~CD--~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMT----VASGNQLVECQ--ECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCC----CCTTCCEEECS--SSCCEEETTTSS
T ss_pred CCcCCCCCCCC----CCCCCceEECC--CCCCeEcCccCC
Confidence 46799999762 00126789999 799999999975
No 101
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=74.87 E-value=1 Score=32.37 Aligned_cols=50 Identities=22% Similarity=0.504 Sum_probs=38.1
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccccc--------------cCCCCeEeecccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV--------------TVPVGSWFCRKCESQ 92 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~--------------~~p~~~W~C~~C~~~ 92 (237)
..|+.|.||..- ..+.++-|. -|.-.+|..|.--. ..++..|.|..|...
T Consensus 13 ~~D~~C~VC~~~---t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVW---TAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCC---CSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCccccc---cccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 356679999874 367888998 89999999998431 124578999999753
No 102
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.66 E-value=1.4 Score=35.53 Aligned_cols=29 Identities=28% Similarity=0.920 Sum_probs=24.2
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...|.+|++. |..+-|. .|..+||..|..
T Consensus 4 ~~~C~~C~~~---------g~ll~Cd--~C~~~~H~~C~~ 32 (184)
T 3o36_A 4 EDWCAVCQNG---------GELLCCE--KCPKVFHLSCHV 32 (184)
T ss_dssp CSSCTTTCCC---------SSCEECS--SSSCEECTTTSS
T ss_pred CCccccCCCC---------CeeeecC--CCCcccCccccC
Confidence 3569999975 6788998 699999999964
No 103
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=71.41 E-value=2 Score=35.05 Aligned_cols=35 Identities=20% Similarity=0.548 Sum_probs=24.7
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
..|.+|+++- ... ...+.+|+|. .|..+||..|.-
T Consensus 3 ~~CpiC~k~Y-~~~-~~~~~MIqCd--~C~~W~H~~Cvg 37 (183)
T 3lqh_A 3 NFCPLCDKCY-DDD-DYESKMMQCG--KCDRWVHSKCEN 37 (183)
T ss_dssp CBCTTTCCBC-TTC-CTTCCEEECT--TTCCEEEGGGSS
T ss_pred CcCCCCcCcc-CCc-ccCCCeEECC--CCCcccchhccc
Confidence 4588998762 111 0124599999 899999999984
No 104
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=71.14 E-value=1.9 Score=35.48 Aligned_cols=29 Identities=31% Similarity=0.928 Sum_probs=24.7
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...|.+|++. |..+-|. .|..+||..|..
T Consensus 7 ~~~C~~C~~~---------g~ll~Cd--~C~~~~H~~Cl~ 35 (207)
T 3u5n_A 7 EDWCAVCQNG---------GDLLCCE--KCPKVFHLTCHV 35 (207)
T ss_dssp CSSBTTTCCC---------EEEEECS--SSSCEECTTTSS
T ss_pred CCCCCCCCCC---------CceEEcC--CCCCccCCccCC
Confidence 4569999975 6888998 699999999975
No 105
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=70.51 E-value=2.8 Score=27.86 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=26.2
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.----..+-+.|. .|++.||+.|...
T Consensus 21 t~C~~C~~~l~Gl~~qg~~C~--~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 21 TFCDHCGSLLWGLVKQGLKCE--DCGMNVHHKCREK 54 (65)
T ss_dssp CBCTTTCCBCCSSSSCEEEET--TTCCEECHHHHTT
T ss_pred CcccccChhhhccCceeeECC--CCCCeEchhHhhh
Confidence 579999875322245789999 7999999999753
No 106
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.25 E-value=5.9 Score=27.62 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=26.9
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.--.-..+-+.|. .|.+.||..|...
T Consensus 29 t~C~~C~~~lwGl~kqg~~C~--~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 29 TFCSVCKDFVWGLNKQGYKCR--QCNAAIHKKCIDK 62 (83)
T ss_dssp CCCSSSCCCCCSSSCCEEEET--TTCCEECTTGGGT
T ss_pred cChhhcChhhccccccccccC--CcCCeeChhhhhh
Confidence 579999875422256889999 7999999999864
No 107
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=70.08 E-value=5 Score=26.60 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=26.6
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.--.-..+-+.|. .|.+.||..|...
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~--~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCD--ACGMNVHHRCQTK 57 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEES--SSCCEECTTTTTT
T ss_pred cCchhcChhheecCCcccccC--CCCCccCHhHHhh
Confidence 579999875422356779999 7999999999754
No 108
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=68.61 E-value=3.9 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=26.5
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.--.-..+-+.|. .|.+.||..|...
T Consensus 25 t~C~~C~~~l~Gl~~qg~~C~--~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 25 TYCYECEGLLWGIARQGMRCT--ECGVKCHEKCQDL 58 (66)
T ss_dssp CCCTTTCCCCCSSCCEEEEET--TTCCEECTTHHHH
T ss_pred cChhhcChhhcccCcceeEcC--CCCCeeCHHHHhh
Confidence 579999875422245789999 7999999999754
No 109
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=68.35 E-value=4.5 Score=28.89 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=39.9
Q ss_pred hhhhhcccccCCccccCcccCCCCcccccCCCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcC
Q psy11049 118 WAHVVCALYIPEVRFGNVTSMEPILLEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQ 193 (237)
Q Consensus 118 WvHv~Calw~pev~f~~~~~~~~v~i~~i~~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~ 193 (237)
-.|..|+.+-.+|.-.. ...-+..+. ... ...|.+|++.+ .|....|. .|.-.+|+.||...
T Consensus 18 ~lhe~Ca~lP~~i~Hp~-Hp~H~L~L~--~~~--~~~C~~C~~~~-------~~~~Y~C~--~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKHVL-HEEHELELT--RVQ--VYTCDKCEEEG-------TIWSYHCD--ECDFDLHAKCALNE 79 (89)
T ss_dssp HHHHHTSSSCSEECCST-TTTSCEEEE--CCS--SCCCTTTSCCC-------CSCEEECT--TTCCCCCHHHHHCS
T ss_pred HHhHHHHcCCceecCCC-CCCCccEEe--eCC--CeEeCCCCCcC-------CCcEEEcC--CCCCeEcHHhcCCC
Confidence 48999997665554211 101111221 111 35799999875 47778998 69999999999743
No 110
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=68.26 E-value=3.9 Score=28.26 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=26.5
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.--.-..+-+.|. .|.+.||..|...
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~--~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCR--QCNAAIHKKCIDK 68 (77)
T ss_dssp EECSSSCCEECCTTCCEEECS--SSCCEEESGGGSS
T ss_pred cCccccChhhccccccccCcC--CCCCcCCHhHHhh
Confidence 479999874322256889999 7999999999864
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=68.02 E-value=2.5 Score=29.50 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=23.8
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
.|.+|++.. ..+..|.|. .|..+||..|..
T Consensus 28 ~C~vC~~~~------d~~~ll~CD--~C~~~yH~~Cl~ 57 (77)
T 3shb_A 28 ACHLCGGRQ------DPDKQLMCD--ECDMAFHIYCLD 57 (77)
T ss_dssp SBTTTCCCS------CGGGEEECT--TTCCEEETTTSS
T ss_pred cCCccCCCC------CCcceeEeC--CCCCccCcccCC
Confidence 577887753 236789998 799999999986
No 112
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=67.41 E-value=2.8 Score=24.75 Aligned_cols=26 Identities=38% Similarity=0.837 Sum_probs=20.6
Q ss_pred CCCeEeeccccccccccccccccCCC
Q psy11049 80 PVGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 80 p~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
+.+.|-|+.|.........+|+.|..
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet 29 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACES 29 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCC
T ss_pred CCCceECCeeEeECccccCEEcccCC
Confidence 46899999999876677889999964
No 113
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=67.15 E-value=3.6 Score=30.40 Aligned_cols=73 Identities=22% Similarity=0.369 Sum_probs=42.5
Q ss_pred cccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccccc-----cccccccccCCCCC---------
Q psy11049 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQE-----KSTKVRCELCPSKD--------- 107 (237)
Q Consensus 42 ~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~~~-----~~~~~~C~LC~~~~--------- 107 (237)
.|.+|...+ |+ .|....|..|+|- ..|.|..|.... -.....|.+|+.-+
T Consensus 9 ~C~~C~~~~---------C~--~C~~c~~~~~~~~-----~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~ 72 (117)
T 4bbq_A 9 KCKACVQGE---------CG--VCHYCRDMKKFGG-----PGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFE 72 (117)
T ss_dssp CSHHHHSCC---------CS--CSHHHHHSGGGTS-----CCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGG
T ss_pred cCcCcCCcC---------CC--CCCCCcCCcccCC-----CCccccchhheeeccccccccccccccCcccccccccccC
Confidence 577777642 88 7988888887754 357888776422 11122333343211
Q ss_pred CCcee-ecCCchhhhhcccccCCc
Q psy11049 108 GALKR-TDNNGWAHVVCALYIPEV 130 (237)
Q Consensus 108 Galk~-t~~~~WvHv~Calw~pev 130 (237)
..|.. ..-..|+|..|.-...+.
T Consensus 73 ~~m~~C~~C~~~~H~~C~~~~~~~ 96 (117)
T 4bbq_A 73 KKLMECCICNEIVHPGCLQMDGEG 96 (117)
T ss_dssp GSCEEETTTCCEECGGGCCSCCCC
T ss_pred cceEEeeecCCeEECCCCCCCccc
Confidence 12333 334799999998654443
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.85 E-value=3.9 Score=31.98 Aligned_cols=30 Identities=27% Similarity=0.751 Sum_probs=25.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
+...|.+|+.. |..+-|. .|.++||..|..
T Consensus 62 ~~d~C~vC~~G---------G~LlcCD--~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 62 MDEQCRWCAEG---------GNLICCD--FCHNAFCKKCIL 91 (142)
T ss_dssp CBCSCSSSCCC---------SSEEECS--SSCCEEEHHHHH
T ss_pred CCCeecccCCC---------CcEEeCC--CCCCeeeHhhcC
Confidence 45679999975 6788887 899999999986
No 115
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=66.57 E-value=5.2 Score=30.85 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=41.3
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccC--CCCeEeecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTV--PVGSWFCRKCESQ 92 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~--p~~~W~C~~C~~~ 92 (237)
....|.+|....+.-.|.=..|. .|...|=+.|-+.... .+..|+|..|...
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~--~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCE--DCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECT--TTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCC--CCCcccccccCCccCCCCCccceechhhHHH
Confidence 34679999998877778889998 6999999999775432 3457999999853
No 116
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=65.43 E-value=3.5 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=24.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.- + +-+.|. .|++.||..|...
T Consensus 15 t~C~~C~~~l-~---qG~~C~--~C~~~~H~~C~~~ 44 (52)
T 1faq_A 15 AFCDICQKFL-L---NGFRCQ--TCGYKFHEHCSTK 44 (52)
T ss_dssp EECTTSSSEE-C---SEEECT--TTTCCBCSTTSSS
T ss_pred cCCCCccccc-c---cCCEeC--CCCCeEChhHHhh
Confidence 4699997743 2 789999 7999999999864
No 117
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=65.07 E-value=0.39 Score=31.89 Aligned_cols=47 Identities=21% Similarity=0.582 Sum_probs=27.4
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCc---eecccccccccCCCCeEeeccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNV---AVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~---~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
...|.||++..+ +..+.-|. |.- .||+.|.--=....+.+.|+.|..
T Consensus 6 ~~~CrIC~~~~~--~~l~~PC~---C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~ 55 (60)
T 1vyx_A 6 VPVCWICNEELG--NERFRACG---CTGELENVHRSCLSTWLTISRNTACQICGV 55 (60)
T ss_dssp CCEETTTTEECS--CCCCCSCC---CSSGGGSCCHHHHHHHHHHHTCSBCTTTCC
T ss_pred CCEeEEeecCCC--CceecCcC---CCCchhhhHHHHHHHHHHhCCCCccCCCCC
Confidence 357999998643 22345554 655 899999742111123456666654
No 118
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.45 E-value=2.6 Score=29.43 Aligned_cols=31 Identities=39% Similarity=0.832 Sum_probs=20.7
Q ss_pred CcccccCCCCCCCCCCeEE-ecCCCc---Cceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVY-CDGQGC---NVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~-Cdg~~C---~~~VH~~CYG 75 (237)
+.|.||+++.. ++++++. |. | .-.||+.|.-
T Consensus 16 ~~C~IC~~~~~-~~~~l~~pC~---C~Gs~h~fH~~Cl~ 50 (80)
T 2d8s_A 16 DICRICHCEGD-DESPLITPCH---CTGSLHFVHQACLQ 50 (80)
T ss_dssp CCCSSSCCCCC-SSSCEECSSS---CCSSSCCEETTHHH
T ss_pred CCCeEcCcccc-CCCeeEeccc---cCCcCCeeCHHHHH
Confidence 57999998664 3455542 42 3 3789999964
No 119
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=63.18 E-value=3.7 Score=27.28 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=26.4
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV 77 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~ 77 (237)
..|++|.+.-. -+.+.+.|. .|.+.+|..|-...
T Consensus 20 ~~C~~Cg~~i~-~gkq~~kC~--dC~~~cH~~C~~~~ 53 (61)
T 4b6d_A 20 ESCVPCGKRIK-FGKLSLKCR--DCRVVSHPECRDRC 53 (61)
T ss_dssp EECTTTCCEEC-TTCEEEEES--SSSCEECGGGGGGS
T ss_pred cccccccCEEE-EeeEeeECC--CCCCeEchhHhhcC
Confidence 47999966442 356889999 89999999996543
No 120
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.83 E-value=5.8 Score=27.87 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=26.8
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.----..+-+.|. .|.+.||..|...
T Consensus 29 t~C~~C~~~l~Gl~kqG~~C~--~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 29 TFCDHCGSLLYGLIHQGMKCD--TCDMNVHKQCVIN 62 (85)
T ss_dssp CBCSSSCCBCCCSSSCEEECS--SSCCEEETTTTTT
T ss_pred cCCcccCccccccccCCCcCC--CcCCccCHhHHhh
Confidence 579999875422256889999 7999999999764
No 121
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.45 E-value=6.9 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.717 Sum_probs=24.1
Q ss_pred CCCCeEeeccccccccccccccccCCCCCC
Q psy11049 79 VPVGSWFCRKCESQEKSTKVRCELCPSKDG 108 (237)
Q Consensus 79 ~p~~~W~C~~C~~~~~~~~~~C~LC~~~~G 108 (237)
.+++.|.|..|.+........|..|.....
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~ 36 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVRKG 36 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCcCC
Confidence 345789999999976678899999986543
No 122
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.03 E-value=2.4 Score=34.46 Aligned_cols=29 Identities=34% Similarity=0.981 Sum_probs=24.1
Q ss_pred ceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 153 KVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 153 ~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
..|.+|+.. |..+.|. +|..+||..|...
T Consensus 3 ~~C~~C~~~---------g~ll~Cd--~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQKP---------GDLVMCN--QCEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCCC---------SSCCCCT--TTCCBCCSTTSTT
T ss_pred CcCccCCCC---------CceeECC--CCCchhccccCCC
Confidence 469999875 6788898 7999999999853
No 123
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=60.95 E-value=5.9 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.736 Sum_probs=20.9
Q ss_pred CCeEeeccccccccccccccccCCCC
Q psy11049 81 VGSWFCRKCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 81 ~~~W~C~~C~~~~~~~~~~C~LC~~~ 106 (237)
+..|.|..|.+........|.+|...
T Consensus 4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~ 29 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGTGHCEMCSLP 29 (31)
T ss_dssp SCCEECSSSCCEECSSCSSCSSSCCC
T ss_pred CccccCCcccccCCCCCCccCCcCCC
Confidence 35799999998766778899999754
No 124
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=60.50 E-value=3.9 Score=38.24 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=24.7
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...| +|+++. ...|.+|+|. .|..+||..|.-
T Consensus 37 ~~yC-~C~~~~-----d~~~~MIqCd--~C~~WfH~~Cvg 68 (488)
T 3kv5_D 37 PVYC-VCRQPY-----DVNRFMIECD--ICKDWFHGSCVG 68 (488)
T ss_dssp CEET-TTTEEC-----CTTSCEEEBT--TTCCEEEHHHHT
T ss_pred CeEE-eCCCcC-----CCCCCeEEcc--CCCCceeeeecC
Confidence 3455 899862 1238899999 699999999984
No 125
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.95 E-value=4.5 Score=27.94 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=24.0
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
...|.||+... -..+.|. .|...||..|..
T Consensus 15 i~~C~IC~~~i--------~~g~~C~--~C~h~fH~~Ci~ 44 (74)
T 2ct0_A 15 VKICNICHSLL--------IQGQSCE--TCGIRMHLPCVA 44 (74)
T ss_dssp SCBCSSSCCBC--------SSSEECS--SSCCEECHHHHH
T ss_pred CCcCcchhhHc--------ccCCccC--CCCchhhHHHHH
Confidence 46799999863 2446787 899999999986
No 126
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=59.90 E-value=9 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=22.7
Q ss_pred cCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 40 LGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 40 ~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
+..|.||++......+..+ -. .|+=.+|..|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~-~~--~CgH~fc~~Ci~ 37 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAH-VL--PCGHLLHRTCYE 37 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEE-EC--TTSCEEETTHHH
T ss_pred CCcCcccChhhcCCCcCeE-ec--CCCCcccHHHHH
Confidence 4579999987643333444 33 488889998874
No 127
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.84 E-value=5.9 Score=27.34 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=25.5
Q ss_pred ccccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 37 ELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 37 ~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
.+..+.|.||.+.-. +-+.|. .|+.++|..|..
T Consensus 12 ~~~i~~C~IC~~~i~----~g~~C~--~C~h~fH~~Ci~ 44 (74)
T 2ct0_A 12 PDAVKICNICHSLLI----QGQSCE--TCGIRMHLPCVA 44 (74)
T ss_dssp SSSSCBCSSSCCBCS----SSEECS--SSCCEECHHHHH
T ss_pred cCCCCcCcchhhHcc----cCCccC--CCCchhhHHHHH
Confidence 334467999999764 336787 799999999975
No 128
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=59.27 E-value=4.5 Score=23.68 Aligned_cols=26 Identities=35% Similarity=0.870 Sum_probs=20.5
Q ss_pred CCCeEeeccccccccccccccccCCC
Q psy11049 80 PVGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 80 p~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
..+.|-|+.|..........|..|..
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACET 29 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCC
T ss_pred CCCceeCCcccCCCccccCEEcccCC
Confidence 35789999999876677899999964
No 129
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=59.00 E-value=6 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.708 Sum_probs=25.6
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|+.|.+.- ..+-+.|. .|++.+|..|...
T Consensus 36 t~C~~C~~~l---~~qG~kC~--~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 36 GWCDLCGREV---LRQALRCA--NCKFTCHSECRSL 66 (72)
T ss_dssp CBCTTTSSBC---SSCCEECT--TSSCEECTGGGGG
T ss_pred cchhhhhHHH---HhCcCccC--CCCCeechhhhcc
Confidence 5799998765 56779999 7999999999853
No 130
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.25 E-value=7.1 Score=24.68 Aligned_cols=28 Identities=39% Similarity=0.826 Sum_probs=23.2
Q ss_pred CCCCeEeeccccccccccccccccCCCC
Q psy11049 79 VPVGSWFCRKCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 79 ~p~~~W~C~~C~~~~~~~~~~C~LC~~~ 106 (237)
.+++.|-|..|...-......|+.|...
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~p 34 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESA 34 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCC
Confidence 3578999999998766789999999654
No 131
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.21 E-value=7.3 Score=29.91 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=25.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
+...|.+|... |..+-|. .|.++||..|...
T Consensus 56 ~~~~C~vC~dG---------G~LlcCd--~Cpr~Fc~~Cl~~ 86 (129)
T 3ql9_A 56 MDEQCRWCAEG---------GNLICCD--FCHNAFCKKCILR 86 (129)
T ss_dssp CBSSCTTTCCC---------SEEEECS--SSSCEEEHHHHHH
T ss_pred CCCcCeecCCC---------CeeEecC--CCchhhhHHHhCC
Confidence 45679999975 6777776 8999999999874
No 132
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=54.26 E-value=7.1 Score=22.44 Aligned_cols=26 Identities=23% Similarity=0.765 Sum_probs=19.1
Q ss_pred CCeEeeccccccccccccccccCCCC
Q psy11049 81 VGSWFCRKCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 81 ~~~W~C~~C~~~~~~~~~~C~LC~~~ 106 (237)
.++|.|..|....-.....|.-|...
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCCcCcCcCCcChhcceecCCCCc
Confidence 48999999987544566788877643
No 133
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=54.00 E-value=8.3 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.676 Sum_probs=21.7
Q ss_pred CCCeEeeccccccccccccccccCCCC
Q psy11049 80 PVGSWFCRKCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 80 p~~~W~C~~C~~~~~~~~~~C~LC~~~ 106 (237)
+...|-|..|.+........|..|...
T Consensus 5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 5 MGAQWNCTACTFLNHPALIRCEQCEMP 31 (34)
T ss_dssp CCCCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CCCcCCCCCCccccCCCCCeeCCCCCc
Confidence 456899999998766678899999754
No 134
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=53.93 E-value=7.3 Score=35.12 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=29.3
Q ss_pred cccCcccccCCCCCC-CCCCeEEecCCCcCceecccccc
Q psy11049 38 LMLGGCCVCSDDSGW-AENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~-~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
+....|+||.+.... ..-+-..|+..+|+-.+|..|.-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~ 344 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE 344 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHH
Confidence 344679999998765 33455789877899999999973
No 135
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=53.48 E-value=8.6 Score=27.26 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=26.4
Q ss_pred cCcccccCCCCC-CCCCCeEEecCCCcCceeccccccc
Q psy11049 40 LGGCCVCSDDSG-WAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 40 ~~~C~VC~~~~~-~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
...|+||...-. ...-+-+.|. =|+..||..|+..
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~--WCq~~VH~~C~~~ 73 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCL--WCKAMVHTSCKES 73 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEES--SSCCEECHHHHHH
T ss_pred CCEeCCCCCEeCCccCCCCCCCc--ccChhHHHHHHHh
Confidence 358999987633 2334678899 5999999999854
No 136
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=52.66 E-value=27 Score=28.15 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=26.7
Q ss_pred CCCeEEecCCCcCceeccccccccc---CCC---CeEeeccccc
Q psy11049 54 ENPLVYCDGQGCNVAVHQACYGIVT---VPV---GSWFCRKCES 91 (237)
Q Consensus 54 ~n~iv~Cdg~~C~~~VH~~CYGi~~---~p~---~~W~C~~C~~ 91 (237)
+-.+|+|+ +|..-+|..|.+... +|. -.|.|..|..
T Consensus 17 ~~~mLqC~--~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 17 GEVELQCG--ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp TSCEEECT--TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred CceeEeec--cccceecHHHhcccccCccccceeEEEEccccCC
Confidence 67899999 799999999998643 342 2366766653
No 137
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.91 E-value=11 Score=25.70 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=26.3
Q ss_pred cCcccccCCCCCC----------CCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 40 LGGCCVCSDDSGW----------AENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 40 ~~~C~VC~~~~~~----------~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
++.|.||.+.... .++.++.=- .|+=.+|..|...-.. ..-.|..|+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~FH~~Ci~~Wl~--~~~~CP~CR~ 72 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWG--ECNHSFHNCCMSLWVK--QNNRCPLCQQ 72 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE--TTSCEEEHHHHHHHTT--TCCBCTTTCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeC--CCCCccChHHHHHHHH--hCCCCCCcCC
Confidence 3557777776543 233233332 4989999999642111 1125666664
No 138
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=50.60 E-value=12 Score=22.99 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=22.1
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..|.||++..... +..+.-. .|+=.+|..|..
T Consensus 6 ~~C~IC~~~~~~~-~~~~~~~--~C~H~f~~~Ci~ 37 (55)
T 1iym_A 6 VECAVCLAELEDG-EEARFLP--RCGHGFHAECVD 37 (55)
T ss_dssp CCCTTTCCCCCTT-SCCEECS--SSCCEECTTHHH
T ss_pred CcCccCCccccCC-CceEECC--CCCCcccHHHHH
Confidence 4699999876533 3344443 488889999964
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.32 E-value=5.4 Score=33.58 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=21.5
Q ss_pred eeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 154 VCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 154 ~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
.|.+|++.. ..+..+.|. .|...||..|..
T Consensus 176 ~C~vC~~~~------~~~~lL~CD--~C~~~yH~~CL~ 205 (226)
T 3ask_A 176 ACHLCGGRQ------DPDKQLMCD--ECDMAFHIYCLD 205 (226)
T ss_dssp SCSSSCCCC------C--CCEECS--SSCCEECSCC--
T ss_pred CCcCCCCCC------CCCCeEEcC--CCCcceeCccCC
Confidence 588898742 126888998 799999999986
No 140
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=49.29 E-value=4.8 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.708 Sum_probs=24.9
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|+.|.+.- ..+-+.|+ .|++.+|..|...
T Consensus 23 t~C~~C~~~i---~kqg~kC~--~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 23 GWCDLCGREV---LRQALRCA--NCKFTCHSECRSL 53 (59)
T ss_dssp EECTTTCSEE---CSCCEECT--TTSCEECHHHHTT
T ss_pred eEchhcchhh---hhCccEeC--CCCCeEehhhhhh
Confidence 4699997754 46779999 7999999999753
No 141
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.73 E-value=2.6 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=25.5
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceeccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI 76 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi 76 (237)
..|++|.+.--.-..+-+.|. .|.+.||+.|...
T Consensus 29 t~C~~C~~~lwGl~kqG~~C~--~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 29 KFCDVCARMIVLNNKFGLRCK--NCKTNIHEHCQSY 62 (74)
T ss_dssp EECSSSCCEECHHHHEEEEES--SSCCEECTTTTGG
T ss_pred cCchhcChhhccccCCccccC--CCCCccChhHHhh
Confidence 469999774311134779999 7999999999864
No 142
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.05 E-value=14 Score=25.73 Aligned_cols=58 Identities=26% Similarity=0.550 Sum_probs=44.7
Q ss_pred CcccccccccccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 29 GCNVAVHQELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 29 ~~~~~~~~~~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
|-+. ++++.....|.-|...-+.-.|.-..|. .|...|=+.|--... ...|+|-.|..
T Consensus 15 gak~-~s~~~~~r~CarC~~~LG~l~~~g~~C~--~Ck~rVC~~Crv~~~--~~~W~C~VC~k 72 (76)
T 2csz_A 15 GAKR-GSQHYSDRTCARCQESLGRLSPKTNTCR--GCNHLVCRDCRIQES--NGTWRCKVCSG 72 (76)
T ss_dssp CSCS-CCTTCCCCBCSSSCCBCSSSCTTTSEET--TTTEECCTTSEEECS--TTCEEEHHHHS
T ss_pred cccC-cCcCCCccchhhhCccccccccCCCcCc--ccChhhcccccccCC--CCCEEEeeCch
Confidence 4443 4455566789999999888888889998 699999999954332 37899999975
No 143
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.12 E-value=12 Score=23.71 Aligned_cols=28 Identities=29% Similarity=0.805 Sum_probs=23.3
Q ss_pred CCCCeEeeccccccccccccccccCCCC
Q psy11049 79 VPVGSWFCRKCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 79 ~p~~~W~C~~C~~~~~~~~~~C~LC~~~ 106 (237)
.+++.|-|+.|..........|+.|...
T Consensus 7 ~~~g~W~C~~C~v~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNKPEAIKCVACETP 34 (47)
T ss_dssp CCSSSEECSSSCCEECSSCSBCSSSCCB
T ss_pred CCCCceECCeeeccCccCCceecCcCCC
Confidence 4578999999998766789999999654
No 144
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=46.11 E-value=12 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.834 Sum_probs=19.3
Q ss_pred CCeEeeccccccccccccccccCCCC
Q psy11049 81 VGSWFCRKCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 81 ~~~W~C~~C~~~~~~~~~~C~LC~~~ 106 (237)
.++|.|..|....-.....|.-|...
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCCcccCCCCCccccccccccccCCc
Confidence 57899999987544566788877654
No 145
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.99 E-value=16 Score=24.00 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=23.3
Q ss_pred cccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 38 LMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 38 ~~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..+..|.||++... +...++.-. |+=.+|..|..
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~~~~~---C~H~f~~~Ci~ 46 (74)
T 2ep4_A 13 NLHELCAVCLEDFK-PRDELGICP---CKHAFHRKCLI 46 (74)
T ss_dssp CCSCBCSSSCCBCC-SSSCEEEET---TTEEEEHHHHH
T ss_pred CCCCCCcCCCcccC-CCCcEEEcC---CCCEecHHHHH
Confidence 34468999999754 334455554 88888888864
No 146
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=45.24 E-value=7.8 Score=37.16 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..|++|.+.--.-..+-+.|. .|++.||..|-.
T Consensus 49 ~~C~~C~~~i~g~~~qg~~C~--~C~~~~H~~C~~ 81 (674)
T 3pfq_A 49 TFCSHCTDFIWGFGKQGFQCQ--VCSFVVHKRCHE 81 (674)
T ss_dssp -----------------------------------
T ss_pred CccccccccccccCCceeECC--CCCCCcChhhcC
Confidence 469999875322245668999 799999999974
No 147
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=43.33 E-value=21 Score=22.47 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=23.7
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..|++|...-- +-+.|. .|+..+|++|-.
T Consensus 15 t~C~~C~k~i~----~G~kC~--~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMI----FGVKCK--HCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSC----CEEEET--TTTEEESSSCTT
T ss_pred cCccccCceeE----CcCCCC--CCCCccchhhcC
Confidence 68999987652 238999 799999999975
No 148
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=43.28 E-value=31 Score=22.88 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=33.7
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCC--CeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV--GSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~--~~W~C~~C~~ 91 (237)
..|.||..-.-.++ --=.|. .|.+.+=..|-|-..+.. ..|.|..|+.
T Consensus 10 ~~C~iC~KTKFADG-~Gh~C~--yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 10 PTCGICHKTKFADG-CGHNCS--YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCSSSSCSCCCSS-CCEEBT--TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred chhhhhccceeccC-CCcccc--ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 68999997654333 223466 688888888887665543 4699999974
No 149
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=42.30 E-value=9.8 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=23.2
Q ss_pred eeecCcCCcCCCcCccceeeecCCCCCCceeehhhhh
Q psy11049 155 CYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQ 191 (237)
Q Consensus 155 C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~ 191 (237)
..+|+++. ...|.+|+|. .|..+||..|.-
T Consensus 7 yCiC~~~~-----d~~~~MIqCD--~C~~WfH~~CVg 36 (447)
T 3kv4_A 7 YCLCRLPY-----DVTRFMIECD--MCQDWFHGSCVG 36 (447)
T ss_dssp ETTTTEEC-----CTTSCEEECT--TTCCEEEHHHHT
T ss_pred EEeCCCcC-----CCCCCeEEcC--CCCcccccccCC
Confidence 34788752 1238999999 799999999984
No 150
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.71 E-value=12 Score=29.68 Aligned_cols=47 Identities=19% Similarity=0.635 Sum_probs=0.0
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccccccCC--------CCeEeecccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVP--------VGSWFCRKCE 90 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p--------~~~W~C~~C~ 90 (237)
.+..|.+|.+ ++.+|.||...|.-.+=..|--...-+ +++|.|-.|.
T Consensus 78 ~~~yC~wC~~-----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCG-----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSC-----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecC-----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
No 151
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=36.32 E-value=9.2 Score=28.14 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=14.3
Q ss_pred eeecCCCCCCceeehhhh
Q psy11049 173 CMMCNKPGCRQQFHVTCA 190 (237)
Q Consensus 173 ~i~C~~~~C~~~FH~~CA 190 (237)
+|+|. .|..+||..|.
T Consensus 2 mi~c~--~c~~w~H~~c~ 17 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCE 17 (140)
T ss_dssp CCCCS--CCSSCHHHHHC
T ss_pred ccccc--cCCCccCCccc
Confidence 68998 79999999995
No 152
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.91 E-value=13 Score=24.77 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=29.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKL 220 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~ 220 (237)
+..+|..|+++.... .....|.- =.+.||+.|-.-........+..+....-.+||..|..++
T Consensus 4 ~~~~C~~C~~~I~~~---g~~~~~~a----~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 4 GSSGCVACSKPISGL---TGAKFICF----QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CCCCCTTTCCCCCTT---TTCCEEEE----TTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred cCCCCccCCCcccCC---CCceeEEE----CCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 456788888874100 00023322 2467888774433221111111001112358999988654
No 153
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=34.78 E-value=15 Score=26.04 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=25.3
Q ss_pred CcccccCCCCCCCCCC--eEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENP--LVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~--iv~Cdg~~C~~~VH~~CYG 75 (237)
..|+.|.+.--.-..+ -+.|. .|.+.||..|..
T Consensus 36 T~Cd~C~~~lWGl~kqp~G~~C~--~C~~~~HkrC~~ 70 (84)
T 2row_A 36 TNCEACMKPLWHMFKPPPALECR--RCHIKCHKDHMD 70 (84)
T ss_dssp EECSSSSSEECCSSSCCCEEEES--SSCCEEEHHHHH
T ss_pred cchhhcCHhhhccccCCCCCEec--CCCCccchhHhC
Confidence 4799997643222444 89998 799999999987
No 154
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.74 E-value=13 Score=25.02 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=32.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVRK 223 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~~ 223 (237)
...+|..|++.. .+..|. .-.+.||+.|-.-........+..+....-.+||..|..++...
T Consensus 14 ~~~~C~~C~~~I-------~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 14 KLPMCDKCGTGI-------VGVFVK----LRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp CCCCCSSSCCCC-------CSSCEE----CSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSS
T ss_pred CCCccccCCCCc-------cCcEEE----ECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCC
Confidence 356899999874 232232 23478998775433221111111000112358999998766543
No 155
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=33.89 E-value=26 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.583 Sum_probs=25.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..|.+|... ...--|+|.-.+|..++|..|--
T Consensus 18 l~C~iC~~~---~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQK---GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBC---CSSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCC---CCcEeEecCCCCCCCcCcHHHHH
Confidence 579999753 13678999855799999999963
No 156
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.50 E-value=20 Score=23.57 Aligned_cols=27 Identities=33% Similarity=0.834 Sum_probs=22.3
Q ss_pred CCCCeEeeccccccccccccccccCCC
Q psy11049 79 VPVGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 79 ~p~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
.+.+.|-|+.|..........|+.|..
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACet 53 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMS 53 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCC
Confidence 356899999999876678899999964
No 157
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=33.46 E-value=18 Score=30.37 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=25.2
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhc
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQT 192 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~ 192 (237)
...|.+|+... ...+.|.. |...||..|...
T Consensus 180 i~~C~iC~~iv--------~~g~~C~~--C~~~~H~~C~~~ 210 (238)
T 3nw0_A 180 VKICNICHSLL--------IQGQSCET--CGIRMHLPCVAK 210 (238)
T ss_dssp CCBCTTTCSBC--------SSCEECSS--SCCEECHHHHHH
T ss_pred CCcCcchhhHH--------hCCcccCc--cChHHHHHHHHH
Confidence 56899999873 45589984 999999999864
No 158
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=32.83 E-value=20 Score=25.46 Aligned_cols=26 Identities=42% Similarity=0.943 Sum_probs=20.6
Q ss_pred CCCeEeeccccccccccccccccCCC
Q psy11049 80 PVGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 80 p~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
+.++|.|..|...-......|+.|..
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~ 87 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACES 87 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCC
T ss_pred CCCcccCCcCCcCChhhcccccccCC
Confidence 46899999999866677899999964
No 159
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.41 E-value=53 Score=21.54 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=21.2
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
....|.||++.... ...++.- .|+-.+|..|.-
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~~~---~C~H~fc~~Ci~ 46 (78)
T 2ect_A 14 SGLECPVCKEDYAL-GESVRQL---PCNHLFHDSCIV 46 (78)
T ss_dssp SSCCCTTTTSCCCT-TSCEEEC---TTSCEEETTTTH
T ss_pred CCCCCeeCCccccC-CCCEEEe---CCCCeecHHHHH
Confidence 34579999987542 2333333 387788888864
No 160
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=32.37 E-value=13 Score=25.45 Aligned_cols=47 Identities=15% Similarity=0.472 Sum_probs=29.0
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||.+.-+.++-.++-|. |+-.+++.|+.... ..+...|..|+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~---CGH~fC~~Cl~~~~-~~~~~~CP~CR~ 58 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCT---CGYQICRFCWHRIR-TDENGLCPACRK 58 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSST---TSCCCCHHHHHHHT-TSSCSBCTTTCC
T ss_pred CcCCccCccCccccccccccC---CCCCcCHHHHHHHH-hcCCCCCCCCCC
Confidence 469999996643333444454 77777777764321 124466777775
No 161
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=31.32 E-value=18 Score=23.96 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=29.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSK 219 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~ 219 (237)
+..+|..|+++.... +.....|.= =.+.||+.|-.-........+..+....-.+||+.|..+
T Consensus 14 ~~~~C~~C~~~I~~~--g~~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 14 VAKKCAGCKNPITGF--GKGSSVVAY----EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCSSSCCCCCCC--SSCCCEEEE----TTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred hCccCcccCCcccCC--CCCceeEEE----CcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 456799999874100 000022322 246888877543332211111111112235899887643
No 162
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.20 E-value=15 Score=23.92 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=29.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
+..+|..|+++. .+..|. .=.+.||+.|-.-........+..+....-.+||..|..++.
T Consensus 4 ~~~~C~~C~~~I-------~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 4 GSSGCVQCKKPI-------TTGGVT----YREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp CCCBCSSSCCBC-------CSSEEE----SSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCCcccCCee-------ccceEE----ECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 345788888764 122232 224788887744322211111111111122489998886643
No 163
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.84 E-value=16 Score=25.26 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCcccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 148 PERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 148 ~~r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
......+|..|+++. .+..|.- =.+.||+.|-.-........+..+....-.+||..|..++.
T Consensus 21 ~~~~~~~C~~C~~~I-------~~~~v~a----~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 21 AGKRTPMCAHCNQVI-------RGPFLVA----LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TTTCCCBBSSSCCBC-------CSCEEEE----TTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred CCCCCCCCccCCCEe-------cceEEEE----CCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 344567899999874 2334432 24788987754433221111110111123589999887654
No 164
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.62 E-value=13 Score=23.94 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=29.2
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKL 220 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~ 220 (237)
+..+|..|+++. .+..|.- =.+.||+.|-.-........+..+....-.+||..|..++
T Consensus 4 ~~~~C~~C~~~I-------~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 4 GVPICGACRRPI-------EGRVVNA----MGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp CCCEETTTTEEC-------CSCEECC----TTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCCCCcccCCEe-------cceEEEE----CccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 346788888764 1333321 2467888774332221111111011112358999887654
No 165
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.22 E-value=18 Score=24.41 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=29.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
+..+|..|+++... .+..|.- =.+.||+.|-.-........+..+....-.+||+.|..++.
T Consensus 14 ~~~~C~~C~~~I~~-----~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 14 FANTCAECQQLIGH-----DSRELFY----EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp CSCBCTTTCCBCCS-----SCCBCCC----SSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCG
T ss_pred cCCcCccCCCcccc-----CcEEEEe----CCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhc
Confidence 45679999886410 1222221 24677877643332211111111111123689999886643
No 166
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=29.89 E-value=32 Score=22.07 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=21.7
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
.+..|.||++... ..+..+.- .|+=.+|..|..
T Consensus 13 ~~~~C~IC~~~~~-~~~~~~~~---~C~H~fc~~Ci~ 45 (69)
T 2kiz_A 13 TEEKCTICLSILE-EGEDVRRL---PCMHLFHQVCVD 45 (69)
T ss_dssp CCCSBTTTTBCCC-SSSCEEEC---TTSCEEEHHHHH
T ss_pred CCCCCeeCCcccc-CCCcEEEe---CCCCHHHHHHHH
Confidence 4467999988653 23334433 488888888864
No 167
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.41 E-value=19 Score=23.42 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=30.0
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVR 222 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~ 222 (237)
..+|..|+++. .+..|. .=.+.||+.|-.-........+..+....-.+||..|..++..
T Consensus 5 ~~~C~~C~~~I-------~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 5 SSGCHQCGEFI-------IGRVIK----AMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SSBCSSSCCBC-------CSCCEE----ETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CCcCccCCCEe-------cceEEE----ECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 45788888764 132232 1246788877543322211111111111235899998876543
No 168
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.60 E-value=18 Score=24.87 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=32.2
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecC-cccCCcceEecCCccchhhhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAG-NYLDNVKYCGYCSHHYSKLVRK 223 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~-~~~~~~~~~~~C~~H~~~~~~~ 223 (237)
...+|..|++.. .+..|. .-.+.||+.|-.-........+ .++ ...-.+||..|..++...
T Consensus 24 ~~~~C~~C~~~I-------~~~~~~----a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~p 85 (89)
T 1x64_A 24 RMPLCDKCGSGI-------VGAVVK----ARDKYRHPECFVCADCNLNLKQKGYF-FVEGELYCETHARARTSG 85 (89)
T ss_dssp SCCBCTTTCCBC-------CSCCEE----SSSCEECTTTCCCSSSCCCTTTSCCE-EETTEEECHHHHHHHSSS
T ss_pred cCCCcccCCCEe-------cccEEE----ECCceECccCCEecCCCCCCCCCCeE-eECCEEECHHHHHHHhCC
Confidence 356899999874 232332 2347889877443222111111 111 112358999998776543
No 169
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=28.59 E-value=25 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=25.5
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV 77 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~ 77 (237)
..|++|.... ..-.-.|+ .|+..+|..|.-..
T Consensus 48 ~~C~~C~~~~---~~~~Y~C~--~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEG---TIWSYHCD--ECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCC---CSCEEECT--TTCCCCCHHHHHCS
T ss_pred eEeCCCCCcC---CCcEEEcC--CCCCeEcHHhcCCC
Confidence 4699999863 45678898 79999999997543
No 170
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=28.12 E-value=38 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.861 Sum_probs=19.6
Q ss_pred CCeEeec--cccccccccccccccCCCC
Q psy11049 81 VGSWFCR--KCESQEKSTKVRCELCPSK 106 (237)
Q Consensus 81 ~~~W~C~--~C~~~~~~~~~~C~LC~~~ 106 (237)
.++|.|. .|....-.....|.-|...
T Consensus 12 ~GDW~C~~~~C~~~Nfa~R~~C~~C~~p 39 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFARRTSCDRCGRE 39 (45)
T ss_dssp SSSCBCSSTTTCCBCCSSCSBCSSSCCB
T ss_pred CCCcCCCCCCCCCEEccccccccccCCc
Confidence 5899999 8987544567788888643
No 171
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=27.79 E-value=9.5 Score=28.07 Aligned_cols=34 Identities=24% Similarity=0.705 Sum_probs=27.5
Q ss_pred CeEEecCCCcCceeccccccccc--------CC-CCeEeeccccc
Q psy11049 56 PLVYCDGQGCNVAVHQACYGIVT--------VP-VGSWFCRKCES 91 (237)
Q Consensus 56 ~iv~Cdg~~C~~~VH~~CYGi~~--------~p-~~~W~C~~C~~ 91 (237)
.||.|| .|.--+|-.|-++.. +| ...|.|..|..
T Consensus 1 ~mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred Cccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 478999 799999999999852 35 34699999975
No 172
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.18 E-value=45 Score=29.48 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=28.0
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
..|.+|...-..-..+-..|. .|+..||..|..
T Consensus 358 t~C~~C~~~~~g~~~qg~~C~--~C~~~~h~~C~~ 390 (406)
T 2vrw_B 358 TSCKACQMLLRGTFYQGYRCY--RCRAPAHKECLG 390 (406)
T ss_dssp CBCTTTCCBCCSSSSCEEEET--TTCCEECGGGGG
T ss_pred CCCccccchhceeCCCCCCCC--CCcCccchhhhh
Confidence 579999987644577889999 799999999986
No 173
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=26.70 E-value=45 Score=31.25 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=28.3
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV 77 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~ 77 (237)
..|.+|.+.-..-..+-..|. .|++.||..|.+..
T Consensus 530 t~C~~C~~~l~gl~~qg~~C~--~C~~~vHk~C~~~v 564 (587)
T 3ky9_A 530 TSCKACQMLLRGTFYQGYRCH--RCRASAHKECLGRV 564 (587)
T ss_dssp CBCTTTCSBCCSSSCCEEEET--TTCCEECSGGGGGS
T ss_pred cccccccccccccccCCcCCC--CCCCccchhhhhcC
Confidence 479999886533466889999 79999999998753
No 174
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.67 E-value=32 Score=22.56 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=22.0
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceecccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG 75 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYG 75 (237)
.+..|.||++... ....+..- .|+=.+|..|..
T Consensus 22 ~~~~C~IC~~~~~--~~~~~~~l--~C~H~fh~~Ci~ 54 (75)
T 1x4j_A 22 EQTLCVVCMCDFE--SRQLLRVL--PCNHEFHAKCVD 54 (75)
T ss_dssp SCCEETTTTEECC--BTCEEEEE--TTTEEEETTHHH
T ss_pred CCCCCeECCcccC--CCCeEEEE--CCCCHhHHHHHH
Confidence 3467999998653 22233343 488889999864
No 175
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.45 E-value=15 Score=26.53 Aligned_cols=48 Identities=25% Similarity=0.671 Sum_probs=35.9
Q ss_pred CcccccCCCCCC--CCCCeEEecCCCcCceecccccccccCCCCeEeeccccc
Q psy11049 41 GGCCVCSDDSGW--AENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCES 91 (237)
Q Consensus 41 ~~C~VC~~~~~~--~~n~iv~Cdg~~C~~~VH~~CYGi~~~p~~~W~C~~C~~ 91 (237)
..|.||.+.-.. +++..|-|. .|...|-+.||-... .++.-.|.+|..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~--eC~FPvCrpCyEYEr-keG~q~CpqCkt 66 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACN--ECGFPACRPCYEYER-REGTQNCPQCKT 66 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCS--SSCCCCCHHHHHHHH-HTSCSSCTTTCC
T ss_pred CccccccCccccCCCCCEEEeee--ccCChhhHHHHHHHH-hccCccccccCC
Confidence 589999998653 577888898 899999999996532 245556777764
No 176
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=26.38 E-value=37 Score=21.73 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=22.5
Q ss_pred CCCeEeeccccccccccccccccCCCCC
Q psy11049 80 PVGSWFCRKCESQEKSTKVRCELCPSKD 107 (237)
Q Consensus 80 p~~~W~C~~C~~~~~~~~~~C~LC~~~~ 107 (237)
++..|.|..|.+........|..|....
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~pr 34 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRAR 34 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCC
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcC
Confidence 3457999999987667789999998653
No 177
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=28 Score=23.05 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=30.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEec-CcccCCcceEecCCccchhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEA-GNYLDNVKYCGYCSHHYSKL 220 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~-~~~~~~~~~~~~C~~H~~~~ 220 (237)
+..+|..|+++. .|..|. .-.+.||+.|-.-........ +..+....-.+||+.+..+.
T Consensus 4 ~~~~C~~C~~~I-------~~~~v~----a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 4 GSSGCDSCEKYI-------TGRVLE----AGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp SCCSCSSSCCCC-------SSCCBC----CSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CcCCcccCCCEe-------cCeeEE----eCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 456788888764 233332 234788887754333221111 11111112358999988654
No 178
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.45 E-value=30 Score=31.30 Aligned_cols=48 Identities=19% Similarity=0.603 Sum_probs=35.2
Q ss_pred ccCcccccCCCCCCCCCCeEEecCCCcCceeccccccccc--------CCCCeEeeccccc
Q psy11049 39 MLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVT--------VPVGSWFCRKCES 91 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~~--------~p~~~W~C~~C~~ 91 (237)
.+..|.+|.+ +.++|.||...|.-.+=..|-.... ...++|.|-.|..
T Consensus 92 ~~~yCr~C~~-----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCS-----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCC-----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCC-----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4468999998 4578999966788777777764321 1257899999985
No 179
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.24 E-value=26 Score=23.53 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=29.9
Q ss_pred cceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhh
Q psy11049 152 NKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVR 222 (237)
Q Consensus 152 ~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~ 222 (237)
..+|..|+++.. .+..|.- -.+.||+.|-.-........+..+....-.+||..|..++..
T Consensus 7 ~~~C~~C~~~I~------~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 7 GNKCGACGRTVY------HAEEVQC----DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp -CBCSSSCCBCS------STTEEEE----TTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCcCcCcCcccc------CceeEEe----CCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 457888887631 1222322 246788777443322211111111112236899999876543
No 180
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=26 Score=23.49 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=30.4
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLVR 222 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~~ 222 (237)
+..+|..|+++... .+..|.- =.+.||+.|-.-........+..+....-.+||..|..++..
T Consensus 14 ~~~~C~~C~~~I~~-----~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 14 DSPKCKGCFKAIVA-----GDQNVEY----KGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 76 (82)
T ss_dssp CSCBCSSSCCBCCS-----SSCEEEC----SSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS
T ss_pred cCCcCccCCccccc-----CceEEEE----CccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhC
Confidence 45689999987410 0222332 246788877433222111111000011225899988876543
No 181
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.78 E-value=42 Score=21.53 Aligned_cols=27 Identities=22% Similarity=0.558 Sum_probs=20.5
Q ss_pred CCCCeEeeccccccccccccccccCCC
Q psy11049 79 VPVGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 79 ~p~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
-+++.|.|..|....+.....|.-|-.
T Consensus 7 ~~eD~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 7 GSEDEWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CCSCCEECSSSCCEECSSCCBCTTTCC
T ss_pred CCcceeecccccccCCCccchhHHHHH
Confidence 357889999999654556788888864
No 182
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.67 E-value=27 Score=23.02 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=29.2
Q ss_pred cccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhh
Q psy11049 150 RFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKL 220 (237)
Q Consensus 150 r~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~ 220 (237)
.....|..|+++... .+..+.= =.+.||+.|-.-........+..+....-.+||..|..++
T Consensus 9 ~~~~~C~~C~~~I~~-----~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 9 LASATCERCKGGFAP-----AEKIVNS----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp CCCCBCSSSCCBCCS-----TTTCEEE----TTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred CCCCCchhcCCccCC-----CceEEEe----CccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 345789999986310 1222221 2357787764332221111110001112258999888654
No 183
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=22.53 E-value=36 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=25.1
Q ss_pred CcccccCCCCCCCCCCeEEecCCCcCceecccccccc
Q psy11049 41 GGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV 77 (237)
Q Consensus 41 ~~C~VC~~~~~~~~n~iv~Cdg~~C~~~VH~~CYGi~ 77 (237)
..|.+|.+--. +-+.|. +|+..+|..|+...
T Consensus 181 ~~C~iC~~iv~----~g~~C~--~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 181 KICNICHSLLI----QGQSCE--TCGIRMHLPCVAKY 211 (238)
T ss_dssp CBCTTTCSBCS----SCEECS--SSCCEECHHHHHHH
T ss_pred CcCcchhhHHh----CCcccC--ccChHHHHHHHHHH
Confidence 46999998765 338898 79999999998653
No 184
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.26 E-value=22 Score=23.73 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=29.7
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
+..+|..|+++. .+..|. .=...||+.|-.-........+..+....-.+||+.|..++.
T Consensus 14 ~~~~C~~C~~~I-------~~~~v~----a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 14 FSPKCGGCNRPV-------LENYLS----AMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CSCBCTTTCCBC-------CSSCEE----ETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred cCCccccCCCee-------cceeEE----ECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 346799998864 122232 224788887743222211111100001122589999887654
No 185
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.08 E-value=21 Score=23.22 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=28.5
Q ss_pred ccceeeecCcCCcCCCcCccceeeecCCCCCCceeehhhhhcCCeeEEecCcccCCcceEecCCccchhhh
Q psy11049 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYCGYCSHHYSKLV 221 (237)
Q Consensus 151 ~~~~C~~C~~~g~~~~~~~~G~~i~C~~~~C~~~FH~~CA~~~G~~~~~~~~~~~~~~~~~~C~~H~~~~~ 221 (237)
+..+|..|+++... .+..|.= =.+.||+.|-.-........+..+....-.+||..|..++.
T Consensus 4 ~~~~C~~C~~~I~~-----~~~~~~a----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 4 GSSGCSACGETVMP-----GSRKLEY----GGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CCCBCSSSCCBCCS-----SSCEECS----TTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred cCCCCccCCCcccc-----CccEEEE----CccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 45678888886410 0122321 23678876643222111101100001122589998886653
No 186
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=20.69 E-value=44 Score=24.16 Aligned_cols=26 Identities=35% Similarity=0.947 Sum_probs=20.7
Q ss_pred CCCeEeeccccccccccccccccCCC
Q psy11049 80 PVGSWFCRKCESQEKSTKVRCELCPS 105 (237)
Q Consensus 80 p~~~W~C~~C~~~~~~~~~~C~LC~~ 105 (237)
+.+.|-|+.|..........|+.|..
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~t 94 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACET 94 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCC
T ss_pred CCCcccCCcCcCCChhhcceecccCC
Confidence 35789999999876677899999964
No 187
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.23 E-value=65 Score=23.28 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=21.1
Q ss_pred ccCcccccCCCCCCC--------------CCCeEEecCCCcCceeccccc
Q psy11049 39 MLGGCCVCSDDSGWA--------------ENPLVYCDGQGCNVAVHQACY 74 (237)
Q Consensus 39 ~~~~C~VC~~~~~~~--------------~n~iv~Cdg~~C~~~VH~~CY 74 (237)
.++.|+||.+..... +..++.= .|+=.+|..|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~---~C~H~FH~~Ci 82 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---VCNHAFHFHCI 82 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE---TTSCEEEHHHH
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeec---ccCcEECHHHH
Confidence 446899998765421 1223333 48888888885
Done!