RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11049
(237 letters)
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 67.7 bits (165), Expect = 3e-15
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCEL 102
C +C D N +++CD CN+AVHQ CYG+ +P G W CR C + + E
Sbjct: 28 CSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIPEGQWLCRHCL--QSRARPALEH 83
Query: 103 CP 104
Sbjct: 84 HH 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 66.8 bits (163), Expect = 5e-15
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQ 92
C +C D N +++CD CN+AVHQ CYG+ +P G W CR C
Sbjct: 19 CSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIPEGQWLCRHCLQS 66
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 52.4 bits (125), Expect = 2e-09
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACY------GIVTVPVGSWFCRKCESQEKST 96
C VC + + N LV C C+ HQ C+ V P W+C +C Q K
Sbjct: 19 CVVCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76
Query: 97 KVRCELCPSKDG 108
+ + G
Sbjct: 77 AQKNQKSGPSSG 88
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 49.5 bits (118), Expect = 1e-08
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG-----IVTVPVGSWFCRKC 89
C +C ++ A N +V CD C HQ C+ V W CR+C
Sbjct: 9 CTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 48.7 bits (116), Expect = 3e-08
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVA-VHQACYGIVTVPVGSWFCRKCESQEKSTKVRCE 101
C+C+ + +V CD Q C + H C G+ P G W+C +C + K R +
Sbjct: 8 YCICN---QVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSRHK 64
Query: 102 LCPSK 106
PS
Sbjct: 65 SGPSS 69
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 39.5 bits (92), Expect = 5e-05
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNV-AVHQACYGIVTVPVGSWFCRKCESQEK 94
C+C+ S ++ CD + C + H +C + P G W+C KC +
Sbjct: 13 YCLCNQVSY---GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDNE 62
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A
2qic_A*
Length = 60
Score = 34.1 bits (78), Expect = 0.004
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVA-VHQACYGIVTVPVGSWFCRKC 89
C+C S ++ CD C++ H AC G+ T P G WFC +C
Sbjct: 12 YCLCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 56
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 34.3 bits (78), Expect = 0.006
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVA-VHQACYGIVTVPVGSWFCRKCESQEK 94
C+C S ++ CD C++ H AC G+ T P G WFC +C +
Sbjct: 38 YCLCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 33.3 bits (76), Expect = 0.006
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVA-VHQACYGIVTVPVGSWFCRKCESQE 93
C+C S ++ CD C + H AC + T P G WFC +C ++
Sbjct: 11 YCLCHQVS---YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEK 59
>1wen_A Inhibitor of growth family, member 4; ING1-like protein;
structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 33.0 bits (75), Expect = 0.009
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNV-AVHQACYGIVTVPVGSWFCRKCESQEK 94
C+C S ++ CD C++ H AC G+ T P G WFC +C +
Sbjct: 18 YCLCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 32.1 bits (73), Expect = 0.026
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV--GSWFCRKCESQEKSTK 97
C C+ +P++ CD C+ H C GI+ P WFC KC ++ K K
Sbjct: 21 CPGCNKPDD--GSPMIGCDD--CDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 32.4 bits (73), Expect = 0.029
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGC-NVAVHQACYGIVTVPVGSWFCRKC 89
C C + S P+V CD C H C G+ P G W+C K
Sbjct: 28 YCFCRNVS---YGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKD 72
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 31.2 bits (71), Expect = 0.032
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92
C VC ++ CD C A H C + P G W C CE +
Sbjct: 14 CEVCQQG-----GEIILCDT--CPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 31.2 bits (71), Expect = 0.036
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQ 92
C VC L+ CD C+ H C + T+P G W C +C+ Q
Sbjct: 12 CSVCRKS-----GQLLMCDT--CSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 31.2 bits (71), Expect = 0.036
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQEKSTK 97
C VC D L+ CD C + H C + +P G W C +C K
Sbjct: 12 CRVCKDGG-----ELLCCDT--CPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 30.1 bits (68), Expect = 0.093
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV--TVPVGSWFCRKCESQEKS 95
C VC D L+ CDG C A H AC +P G+W C C
Sbjct: 11 CAVCRDGG-----ELICCDG--CPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 29.3 bits (66), Expect = 0.18
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQE 93
C VC L+ CD C+ H C + T+P G W C +C+ Q
Sbjct: 8 CSVCRKS-----GQLLMCDT--CSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 28.8 bits (65), Expect = 0.22
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQAC--YGIVTVPVGSWFCRKCE 90
C VC ++ L+ CD CN A H C + VP G W C C+
Sbjct: 3 CKVCRKKG--EDDKLILCDE--CNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 30.5 bits (68), Expect = 0.34
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 42 GCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPV-GSWFCRKCES 91
C +C + + CD C++A H C + +VP W+C +C +
Sbjct: 176 ACHLCGGRQ--DPDKQLMCDE--CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 29.1 bits (65), Expect = 0.38
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQE 93
C VCS ++ L++CDG C+ H C + +P G W C KC E
Sbjct: 19 CQVCSRGD--EDDKLLFCDG--CDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 29.3 bits (65), Expect = 0.51
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 36 QELMLGGCCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQE 93
Q + C +C ++ L++CD C+ H C + P GSW C C
Sbjct: 54 QCIECKSCILCGTSE--NDDQLLFCDD--CDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109
Query: 94 KS 95
K
Sbjct: 110 KE 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 28.9 bits (64), Expect = 0.62
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKC 89
C D G + +++CD C+ H C + +P G W C+ C
Sbjct: 63 TCSSCRDQGKNADNMLFCDS--CDRGFHMECCDPPLTRMPKGMWICQIC 109
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 28.3 bits (62), Expect = 0.94
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI--------VTVPVGSWFCRKCESQEK 94
C C + + + C+ C H+ C G+ T W C C ++
Sbjct: 6 CGACRSEVN-DDQDAILCEA-SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63
Query: 95 STKVRCE 101
+
Sbjct: 64 GSGSGSG 70
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 28.0 bits (62), Expect = 0.98
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACY--GIVTVPVGSWFCRKCESQEKSTKVRC 100
C VC LV C+ C H C+ + VP W C C +
Sbjct: 28 CRVCQK-----PGDLVMCNQ--CEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDV 80
Query: 101 ELCPSK 106
+L K
Sbjct: 81 DLQACK 86
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 27.3 bits (60), Expect = 1.3
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 44 CVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGS------WFCRKCE 90
C+CS + ++ C+ Q C V H C I P S ++C C
Sbjct: 13 CICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 29.1 bits (64), Expect = 1.4
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 43 CCVC-SDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGSWFCRKCESQEKSTKVRCE 101
C +C + E PLV CD C + H C + WF + + +V
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVC-------LEEWF-KTLMDGKTFLEVSFG 362
Query: 102 LCP 104
CP
Sbjct: 363 QCP 365
Score = 27.5 bits (60), Expect = 4.2
Identities = 7/39 (17%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 151 FNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTC 189
C IC + C+ C + H C
Sbjct: 307 EELRCNICFAYRLDGGEV---PLVSCDNAKCVLKCHAVC 342
>1wew_A DNA-binding family protein; structural genomics, PHD domain,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 27.0 bits (59), Expect = 1.8
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 44 CVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGS-------WFCRKCE 90
CVC + + ++ C+ C+V H C + P+ ++C C
Sbjct: 19 CVCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR 70
>1u83_A Phosphosulfolactate synthase; structural genomics,
phosphosulfolactate PSI, protein structure initiative,
midwest center for struc genomics; 2.20A {Bacillus
subtilis} SCOP: c.1.27.1
Length = 276
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 196 LCEEAGNYLDNVKYCGYCSHHYSKLVRK----KGANIKPIPRDW 235
A +Y+D VK+ S L K K +I
Sbjct: 58 AIAGASDYIDFVKFGWGTSLLTKDLEEKISTLKEHDITFFFGGT 101
>2ouw_A Alkylhydroperoxidase AHPD core; YP_425393.1, carboxymuconolactone
decarboxylase family, structural genomics, joint for
structural genomics; 1.95A {Rhodospirillum rubrum} SCOP:
a.152.1.4
Length = 138
Score = 26.5 bits (58), Expect = 5.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 CGYCSHHYSKLVRKKGAN 227
C YC+H ++ R KG
Sbjct: 84 CSYCAHSHTAAARAKGMT 101
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 25.6 bits (56), Expect = 5.7
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 21/81 (25%)
Query: 161 NGHKASRSKFGA---CMMCNKP--------GCRQQFHVTCAQTQGLLCEEAGNYLDNVKY 209
+G + + A C+ C K +Q FH++C C N L Y
Sbjct: 3 SGSSGMKFQAPARETCVECQKTVYPMERLLANQQVFHISC-----FRCSYCNNKLSLGTY 57
Query: 210 CG-----YCSHHYSKLVRKKG 225
YC H+++L + KG
Sbjct: 58 ASLHGRIYCKPHFNQLFKSKG 78
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 26.6 bits (58), Expect = 7.1
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 194 GLLCEEAGNYLDNVKYCGYCSHHYSKLVRKKGANIKPIPRDWN 236
G+L ++ N + Y + Y K + GA + P+ D
Sbjct: 34 GILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT 76
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling
pathway, WNT signaling complex, chromosomal
rearrangement, signaling protein; 1.59A {Homo sapiens}
PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 24.7 bits (53), Expect = 7.9
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI--------VTVPVGSWFCRKCES 91
C +C+++ + + C+ C H+ C G+ W C C +
Sbjct: 11 CGICTNEVN-DDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 25.3 bits (55), Expect = 9.7
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 14/66 (21%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQEKSTKVRC 100
C C ++ ++ CD C+ H C + +VP W C+ C C
Sbjct: 57 CQNCKQSG--EDSKMLVCDT--CDKGYHTFCLQPVMKSVPTNGWKCKNC--------RIC 104
Query: 101 ELCPSK 106
PS
Sbjct: 105 ISGPSS 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.481
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,792,196
Number of extensions: 218509
Number of successful extensions: 632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 129
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)