RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11049
(237 letters)
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 37.9 bits (87), Expect = 9e-05
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI------VTVPVGSWFCRKCESQEK 94
C VC + + N LV C C+ HQ C+ V P W+C +C Q K
Sbjct: 19 CVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74
Score = 25.6 bits (55), Expect = 2.2
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 8 CCVCSDDSGWAENPLVYCDGQGCNVAVHQ 36
C VC + + N LV C C+ HQ
Sbjct: 19 CVVCRQMTVASGNQLVECQ--ECHNLYHQ 45
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 31.5 bits (71), Expect = 0.011
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGC-NVAVHQACYGIVTVPVGSWFCRKC 89
C+C+ S ++ CD + C H +C + P G W+C KC
Sbjct: 18 YCLCNQVS---YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 62
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 30.3 bits (68), Expect = 0.021
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACY--GIVTVPVGSWFCRKCE 90
C VC ++ L+ CD CN A H C + VP G W C C+
Sbjct: 3 CKVCRK--KGEDDKLILCDE--CNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 30.3 bits (68), Expect = 0.026
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 44 CVCSDDSGWAENPLVYCDG-QGCNVAVHQACYGIVTVPVGSWFCRKCESQ 92
C+C S ++ CD H AC G+ T P G WFC +C +
Sbjct: 5 CLCHQVSYG---EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 51
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 30.4 bits (68), Expect = 0.033
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYG--IVTVPVGSWFCRKCESQEKSTKVRC 100
C VC LV C+ C H C+ + VP W C C +
Sbjct: 10 CRVCQKP-----GDLVMCNQ--CEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDV 62
Query: 101 EL 102
+L
Sbjct: 63 DL 64
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 30.4 bits (68), Expect = 0.036
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI--VTVPVGSWFCRKCESQEK 94
C DD ++ CDG C V H C GI + C +C
Sbjct: 21 CGTKDDDGE----RMLACDG--CGVWHHTRCIGINNADALPSKFLCFRCIELSG 68
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 29.5 bits (66), Expect = 0.057
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQAC--YGIVTVPVGSWFCRKCESQEKSTK 97
C VC D L+ CD C + H C + +P G W C +C K
Sbjct: 12 CRVCKDG-----GELLCCDT--CPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 61
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 28.9 bits (64), Expect = 0.14
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 11/55 (20%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGI-------VTVPVGSWFCRKCE 90
C+C ++ CD C H C GI + + C C
Sbjct: 18 YCICRQPHN--NRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 28.1 bits (62), Expect = 0.20
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIV---TVPVGSWFCRKCES 91
C C + S A+ + CD C + H C I + + C C +
Sbjct: 9 CGACGE-SYAADEFWICCDL--CEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 27.5 bits (60), Expect = 0.50
Identities = 9/62 (14%), Positives = 11/62 (17%), Gaps = 2/62 (3%)
Query: 128 PEVRFGNVTSMEPILLEEIPPERFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHV 187
P V F IL P++ CY S
Sbjct: 8 PSVWF-EAEFFHHILHWTPIPQQSESTCYEVALL-RYGIESWNSISQCSQTLSYDLTAVT 65
Query: 188 TC 189
Sbjct: 66 LD 67
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory
fumarate reductase) {Shewanella frigidimarina [TaxId:
56812]}
Length = 143
Score = 27.1 bits (59), Expect = 1.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 184 QFHVTCAQTQGLLCEEA----GNYLDNVKYCGYCSHHYS 218
Q H T + G++ EA G L N + + + +
Sbjct: 2 QAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITT 40
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.9 bits (56), Expect = 1.4
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPVGS-------WFCRKC 89
CVC + + ++ C+ C+V H C + P+ ++C C
Sbjct: 18 RCVCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 69
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 120
Score = 26.5 bits (58), Expect = 1.7
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 184 QFHVTCAQTQGLLCEEA----GNYLDNVKYCGYCSHHY 217
QFH T G+L E G YL N + +
Sbjct: 5 QFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYA 42
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory
fumarate reductase) {Shewanella putrefaciens [TaxId:
24]}
Length = 146
Score = 25.9 bits (56), Expect = 3.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 184 QFHVTCAQTQGLLCEEA----GNYLDNVKYCGYCSH 215
Q H T + G++ EA G + N + + +
Sbjct: 3 QAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNE 38
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 26.4 bits (57), Expect = 3.3
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 9 CVCSDDSGWAENPLVYCDGQGCNVAVHQELMLGGCCVCSDDSGWAENP-LVYCDGQGCNV 67
+ Y + + L +G +A + + +G +
Sbjct: 184 LITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQT--FARTFEIKFETPEGDHE 241
Query: 68 AVHQACYGIVT 78
VHQ CYG+
Sbjct: 242 YVHQTCYGLSD 252
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 24.6 bits (53), Expect = 3.9
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 43 CCVCSDDSGWAENPLVYCDGQGCNVAVHQACYGIVTVPV---GSWFCRKCESQEKSTKVR 99
C+C + ++ C C H +C GI + C CE+ + ++
Sbjct: 14 YCLCRQPYNV-NHFMIECGL--CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMK 70
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 25.3 bits (54), Expect = 6.7
Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 2/110 (1%)
Query: 103 CPSKDG-ALKRTDNNGWAHVVCALYIPEVRFGNVTS-MEPILLEEIPPERFNKVCYICEE 160
L+R + ++ R GN + L I +
Sbjct: 21 VLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYL 80
Query: 161 NGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKYC 210
+ + + + G + V + + +E G L+ C
Sbjct: 81 SYAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSC 130
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 24.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 153 KVCYICEEN-GHKASRSKFGACMMCNKPGCR 182
+ C IC + G F AC C P CR
Sbjct: 17 QFCEICGDQIGLTVEGDLFVACNECGFPACR 47
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA
domain 2 {Streptococcus equisimilis [TaxId: 119602]}
Length = 175
Score = 24.7 bits (53), Expect = 8.4
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 1/68 (1%)
Query: 150 RFNKVCYICEENGHKASRSKFGACMMCNKPGCRQQFHVTCAQTQGLLCEEAGNYLDNVKY 209
+ ++ + C+M + + + +Y+ K
Sbjct: 51 SIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWR-PMPGRFKDYIAAPKA 109
Query: 210 CGYCSHHY 217
GY S H
Sbjct: 110 NGYQSIHT 117
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 25.2 bits (55), Expect = 9.9
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 212 YCSHHYSKLVRKKGANIKPIPRDW 235
+CSH + + RD
Sbjct: 405 FCSHTPVPVRWSDNTSSHMAGRDT 428
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.481
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 997,093
Number of extensions: 49544
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 55
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)