BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11059
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
+C C G+ G C++D +EC+SNPC N ATC ++I + C+C PGY G C +N +EC S
Sbjct: 29 ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 88
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCETNI 425
SPCLH C+D++ F C CP G TG LC+ ++
Sbjct: 89 SPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 348 DFDECL--SNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEV 405
D DEC +NPC + C N + + C C GY+G C I++NEC S+PC + ATC+D++
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 406 ATFSCVCPKGLTGRLCETNIDDC 428
F C+C G G CE N D+C
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDEC 86
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 259 GDPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
+PC+H G C++ + C C Y G C +++ CV + C N TC +
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQI------- 63
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
G+ +C C PG+ G HC+V+ DEC S+PC + C +KIN + C C G
Sbjct: 64 ----------GEF--QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTG 111
Query: 378 YSGKECSININE 389
++G C ++++
Sbjct: 112 FTGHLCQVDLHH 123
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 70 APPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----V 119
A PC + C L +EC C GY ++ +C SNPC ND C+ +
Sbjct: 12 ANPCEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 120 TIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP 160
+ Y+G +CE+ +C+S+PCL++G C+D CE P
Sbjct: 70 CMPGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECP 109
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 24/109 (22%)
Query: 12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
C NPC++ GKC + G+++C C +T CE ++ + +
Sbjct: 8 CSLGANPCEHAGKCI-NTLGSFECQCLQGYT------------GPRCEIDVNECV---SN 51
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYKEIR------DCTSNPCLNDGVCV 114
PC N ATC Q+ E ++C+C PGY+ + +C S+PCL++G C+
Sbjct: 52 PCQNDATCLDQIGE--FQCICMPGYEGVHCEVNTDECASSPCLHNGRCL 98
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 65/171 (38%)
Query: 133 EIGDCS--SNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEI 190
++ +CS +NPC + G C++ C+ C+ Y G E+ ++
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQ-----------------CLQGYTGPRCEI-DV 45
Query: 191 RDCTSNPCLNDGVCVDEV----------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGK 240
+C SNPC ND C+D++ Y+G + E+ +C S+PCL++
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV-NTDECASSPCLHN---------- 94
Query: 241 CNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVEL 291
G C+DK + C+CP + G C V+L
Sbjct: 95 ------------------------GRCLDKINEFQCECPTGFTGHLCQVDL 121
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
+C C G+ G C++D +EC+SNPC N ATC ++I + C+C PGY G C +N +EC S
Sbjct: 27 ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 86
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
SPCLH C+D++ F C CP G TG LC+
Sbjct: 87 SPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 348 DFDECL--SNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEV 405
D DEC +NPC + C N + + C C GY+G C I++NEC S+PC + ATC+D++
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 406 ATFSCVCPKGLTGRLCETNIDDC 428
F C+C G G CE N D+C
Sbjct: 62 GEFQCICMPGYEGVHCEVNTDEC 84
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 259 GDPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
+PC+H G C++ + C C Y G C +++ CV + C N TC +
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQI------- 61
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
G+ +C C PG+ G HC+V+ DEC S+PC + C +KIN + C C G
Sbjct: 62 ----------GEF--QCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTG 109
Query: 378 YSGKECS 384
++G C
Sbjct: 110 FTGHLCQ 116
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 20/114 (17%)
Query: 232 VNPCQNGGKCNEDETGNYDCTCDALHTG------------DPCKH-GSCVDKRAGYFCDC 278
NPC++ GKC + G+++C C +TG +PC++ +C+D+ + C C
Sbjct: 10 ANPCEHAGKCI-NTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 68
Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
P Y G +C V C CL+ G C + + F C CP+G+ G +C+
Sbjct: 69 MPGYEGVHCEVNTDECAS-SPCLHNGRCLDKI-----NEFQCECPTGFTGHLCQ 116
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 70 APPCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----V 119
A PC + C L +EC C GY ++ +C SNPC ND C+ +
Sbjct: 10 ANPCEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI 67
Query: 120 TIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP 160
+ Y+G +CE+ +C+S+PCL++G C+D CE P
Sbjct: 68 CMPGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECP 107
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 24/109 (22%)
Query: 12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
C NPC++ GKC + G+++C C +T CE ++ + +
Sbjct: 6 CSLGANPCEHAGKCI-NTLGSFECQCLQGYT------------GPRCEIDVNECV---SN 49
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYKEIR------DCTSNPCLNDGVCV 114
PC N ATC Q+ E ++C+C PGY+ + +C S+PCL++G C+
Sbjct: 50 PCQNDATCLDQIGE--FQCICMPGYEGVHCEVNTDECASSPCLHNGRCL 96
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 40/143 (27%)
Query: 133 EIGDCS--SNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEI 190
++ +CS +NPC + G C++ C+ C+ Y G E+ ++
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQ-----------------CLQGYTGPRCEI-DV 43
Query: 191 RDCTSNPCLNDGVCVDEV----------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGK 240
+C SNPC ND C+D++ Y+G + E+ +C S+PCL++ G+
Sbjct: 44 NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV-NTDECASSPCLHN--------GR 94
Query: 241 CNEDETGNYDCTCDALHTGDPCK 263
C D+ + C C TG C+
Sbjct: 95 C-LDKINEFQCECPTGFTGHLCQ 116
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCD-VDFDECLSN 355
P+ C NGG C P L D + F+C CP G+ C A D + C N
Sbjct: 5 PNPCENGGICLPGLADGS---FSCECPDGFTDPNCSSVV---EVASDEEEPTSAGPCTPN 58
Query: 356 PCFNGATCQ-------NKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATF 408
PC NG TC+ + GY C C G++G C NINECE PC +G C D VA +
Sbjct: 59 PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANY 118
Query: 409 SCVCPKGLTGRLCE 422
SC CP GR C+
Sbjct: 119 SCECPGEFMGRNCQ 132
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 28/117 (23%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYKE------------------IRDCTSNPCLNDGVC 113
PC NG C P L + + C CP G+ + CT NPC N G C
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66
Query: 114 VWMFDVTIQVYKGRYCELPE----------IGDCSSNPCLNDGVCVDVYKGRYCELP 160
+ G C+ P I +C PC N G+C D+ CE P
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECP 123
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCT 252
C NPC N G+C+ + G + E D ++P + V + E+ T CT
Sbjct: 3 CDPNPCENGGICLPGLADGSFS--CECPDGFTDPNCSSVVEVASD----EEEPTSAGPCT 56
Query: 253 CDALHTGDPCKHGSCV--DKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYL 310
+ H G C+ D GY C CP + G +C + C + C NGG C +
Sbjct: 57 PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE-VEPCKNGGICTDLV 115
Query: 311 VDETQHRFNCTCPSGYHGKICE 332
+ ++C CP + G+ C+
Sbjct: 116 AN-----YSCECPGEFMGRNCQ 132
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 137 CSSNPCLNDGVCV-DVYKGRY-CELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCT 194
C NPC N G+C+ + G + CE P D ++P N V+V E CT
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECP---DGFTDP--NCSSVVEVASDE-EEPTSAGPCT 56
Query: 195 SNPCLNDGVC-VDEVYKGRYW-----ELPEIRD---CTSNPCLNDC-VNPCQNGGKCNED 244
NPC N G C + E Y+G + + P + C N +N+C V PC+NGG C D
Sbjct: 57 PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHN--INECEVEPCKNGGICT-D 113
Query: 245 ETGNYDCTCDALHTGDPCKH 264
NY C C G C++
Sbjct: 114 LVANYSCECPGEFMGRNCQY 133
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 17 NPCQNGGKCNED-ETGNYDCTC-DALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCL 74
NPC+NGG C G++ C C D C + E P S CT PC
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDE---EEPTSAGPCTPN-PCH 61
Query: 75 NGATCRPQLTEQL-------YECVCPPGY------KEIRDCTSNPCLNDGVCVWMF 117
NG TC +++E Y C CP G+ I +C PC N G+C +
Sbjct: 62 NGGTC--EISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLV 115
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 36/122 (29%)
Query: 102 CTSNPCLNDGVCVWMF------------------DVTIQVYKGRYCELPEIGDCSSNPCL 143
C NPC N G+C+ ++V E G C+ NPC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEE-EPTSAGPCTPNPCH 61
Query: 144 NDGVCV-------DVYKGRYCELPE----------IGDCSSNPCLNDGVCVDVYKGRYWE 186
N G C D + G C+ P I +C PC N G+C D+ E
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCE 121
Query: 187 LP 188
P
Sbjct: 122 CP 123
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 61/147 (41%), Gaps = 38/147 (25%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK------------------CFCRP 338
P C NGG C R C CP G+HG CEK C C P
Sbjct: 152 PGGCRNGGFC--------NERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPP 203
Query: 339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHG 398
GF G +CD S CFNG TC C+C PG G++C I++C PC +G
Sbjct: 204 GFYGVNCD---KANCSTTCFNGGTC---FYPGKCICPPGLEGEQCE--ISKC-PQPCRNG 254
Query: 399 ATCIDEVATFSCVCPKGLTGRLCETNI 425
CI + C C KG G LC +
Sbjct: 255 GKCIGKS---KCKCSKGYQGDLCSKPV 278
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 72/193 (37%), Gaps = 57/193 (29%)
Query: 230 DCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDK--RAGY-----FCDCPPTY 282
+C C+NGG CNE C C G C+ C + G FC CPP +
Sbjct: 150 ECPGGCRNGGFCNERRI----CECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGF 205
Query: 283 GGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAG 342
G NC + C TC NGGTC Y GK C C PG G
Sbjct: 206 YGVNC--DKANC--STTCFNGGTCF------------------YPGK----CICPPGLEG 239
Query: 343 DHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSINI--------------N 388
+ C++ +C PC NG C I C C+ GY G CS + N
Sbjct: 240 EQCEIS--KC-PQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN 293
Query: 389 ECESSPCLHGATC 401
+C+ HG C
Sbjct: 294 KCQCQEGWHGRHC 306
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 19 CQNGGKCNEDETGNYDCTC-DALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGA 77
C+NGG CNE C C D H HCE +CT P C+NG
Sbjct: 155 CRNGGFCNERRI----CECPDGFH-------------GPHCE----KALCT--PRCMNGG 191
Query: 78 TCRPQLTEQLYECVCPPGYKEI---RDCTSNPCLNDGVCVWMFD-VTIQVYKGRYCELPE 133
C +T C+CPPG+ + + S C N G C + + +G CE+ +
Sbjct: 192 LC---VTPGF--CICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISK 246
Query: 134 IGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNP 169
PC N G C+ K + C GD S P
Sbjct: 247 ----CPQPCRNGGKCIGKSKCK-CSKGYQGDLCSKP 277
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 17/71 (23%)
Query: 228 LNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCK----------HGSCVDKRAGYFCD 277
++ C PC+NGGKC G C C + GD C HG+C + C
Sbjct: 244 ISKCPQPCRNGGKC----IGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNK---CQ 296
Query: 278 CPPTYGGKNCS 288
C + G++C+
Sbjct: 297 CQEGWHGRHCN 307
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININEC---ESSPCLHGATCIDEVATF 408
C+S PC + +CQ+ I GYTC C+PGY G C + NEC + C H C+ ++
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESY 65
Query: 409 SCVCPKG 415
+C C +G
Sbjct: 66 TCSCAQG 72
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 20/75 (26%)
Query: 260 DPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH-- 316
PC H GSC D GY C C P Y G NC L C P D QH
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEGSNCE------------LAKNECHPERTDGCQHFC 58
Query: 317 -----RFNCTCPSGY 326
+ C+C GY
Sbjct: 59 LPGQESYTCSCAQGY 73
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
C S PCLH +C D + ++C C G G CE ++C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECH 47
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
D +EC+SNPC N ATC ++I + C+C PGY G C I
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGRLCET 423
++NEC S+PC + ATC+D++ F C+C G G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI 38
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYKEI 99
PC N ATC Q+ E ++C+C PGY+ +
Sbjct: 9 PCQNDATCLDQIGE--FQCICMPGYEGV 34
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
VD D+C SNPC NG +C++ IN Y C C G+ GK C +
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++ ++CES+PCL+G +C D++ ++ C CP G G+ CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
CLNGG+CK + + + C CP G+ GK CE
Sbjct: 11 CLNGGSCKDDI-----NSYECWCPFGFEGKNCE 38
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
VD D+C NPC NG C++ IN Y C C G+ GK C ++
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
++ ++CE +PCL+G C D++ ++ C C G G+ CE +
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
P+ CLNGG CK + + + C C G+ GK CE
Sbjct: 53 PNPCLNGGLCKDDI-----NSYECWCQVGFEGKNCE 83
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
VD D+C NPC NG C+ IN Y C C G+ GK C ++
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++ ++CE +PCL+G C ++ ++ C C G G+ CE
Sbjct: 46 VDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 319 NCTCPSGYHGKICEKCFCRPG-----------------FAGDHCDVDFDECLSN-PCFNG 360
+C C G+ G C+KC PG + G CD D + C ++ PC NG
Sbjct: 84 DCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNG 143
Query: 361 ATCQNK-INGYTCVCAPGYSGKECSI 385
TC N + Y C C GYSG C I
Sbjct: 144 GTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDH----------CDVDFDECLSNPCFNGATCQNKI- 367
N TC G+ G C + CR G + H C + + C C + I
Sbjct: 51 NKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGIC 110
Query: 368 -NGYTCVCAPGYSGKECSININECES-SPCLHGATCIDEVA-TFSCVCPKGLTGRLCET 423
+ C+C + G+ C ++N C + PCL+G TC + + C CP+G +G CE
Sbjct: 111 NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 262 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
C HG C + + C C +GG+ C +L C CLNGGTC D ++ C+
Sbjct: 105 CVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD----KYQCS 157
Query: 322 CPSGYHGKICE 332
CP GY G CE
Sbjct: 158 CPEGYSGPNCE 168
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 41 HTVCCVGLANQTLGSIHCETPISNQIC-------TTAPPCLNGATCRPQLTEQLYECVCP 93
H C G+ N+ + CET Q+C T PCLNG TC ++ Y+C CP
Sbjct: 102 HPGCVHGICNEPWQCL-CETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDK-YQCSCP 159
Query: 94 PGYK 97
GY
Sbjct: 160 EGYS 163
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQ 315
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTG 107
Query: 316 HRFNCTCPSGY 326
+ +C C GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQ 315
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTG 107
Query: 316 HRFNCTCPSGY 326
+ +C C GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 46
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 261 PCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQHRF 318
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T +
Sbjct: 13 PCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTGTKR 69
Query: 319 NCTCPSGY 326
+C C GY
Sbjct: 70 SCRCHEGY 77
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQ 315
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTG 107
Query: 316 HRFNCTCPSGY 326
+ +C C GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQ 315
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 51 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTG 107
Query: 316 HRFNCTCPSGY 326
+ +C C GY
Sbjct: 108 TKRSCRCHEGY 118
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
D D+C S+PC NG +C++++ Y C C P + G+ C +
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
++C SSPC +G +C D++ ++ C C GR CET+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 261 PCKHG-SCVDKRAGYFCDCPPTYGGKNCSVE 290
PC++G SC D+ Y C C P + G+NC
Sbjct: 10 PCQNGGSCKDQLQSYICFCLPAFEGRNCETH 40
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
++C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 40
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 261 PCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQHRF 318
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T +
Sbjct: 7 PCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTGTKR 63
Query: 319 NCTCPSGY 326
+C C GY
Sbjct: 64 SCRCHEGY 71
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSINI 387
D D+C +PC N C++ I YTC CA G+ GK C +
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFST 41
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE PCL+ C D + ++C C +G G+ CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 21/93 (22%)
Query: 288 SVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDV 347
+V++ C PD C +G T + C CP GY AG+ C V
Sbjct: 2 AVDMDECKEPDVCKHGQCIN------TDGSYRCECPFGYI------------LAGNEC-V 42
Query: 348 DFDEC-LSNPCFNGATCQNKINGYTCVCAPGYS 379
D DEC + NPC NG TC+N I G+ C C G+
Sbjct: 43 DTDECSVGNPCGNG-TCKNVIGGFECTCEEGFE 74
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 260 DPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 319
D CKHG C++ Y C+CP Y + CV D C G C F
Sbjct: 12 DVCKHGQCINTDGSYRCECPFGY-----ILAGNECVDTDECSVGNPCGNGTCKNVIGGFE 66
Query: 320 CTCPSGYH 327
CTC G+
Sbjct: 67 CTCEEGFE 74
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGY--SGKECSININECE-SSPCLHGATCID 403
VD DEC C N Y C C GY +G EC ++ +EC +PC +G TC +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNG-TCKN 60
Query: 404 EVATFSCVCPKGL 416
+ F C C +G
Sbjct: 61 VIGGFECTCEEGF 73
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E A
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQA 62
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 63 SVVCSCARGYT 73
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 389 ECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
+C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 351 ECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQ 315
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 3 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTG 59
Query: 316 HRFNCTCPSGY 326
+ +C C GY
Sbjct: 60 TKRSCRCHEGY 70
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININ 388
D D+C +PC N C+ I YTC CA G+ GK C +
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE PCL+ C + ++C C +G G+ CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 389 ECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
+C SSPC +G +C D++ ++ C C GR CET+ DD
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 351 ECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 39
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDETQ 315
PC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 3 ASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHTG 59
Query: 316 HRFNCTCPSGY 326
+ +C C GY
Sbjct: 60 TKRSCRCHEGY 70
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSIN 386
D D+C +PC N C+ I YTC CA G+ GK C +
Sbjct: 46 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCEFS 84
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE PCL+ C + ++C C +G G+ CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 101 SVVCSCARGYT 111
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 50 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 91
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 92 DQFCHEEQNSVVCSCARGYT 111
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 62
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 63 SVVCSCARGYT 73
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 12 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 53
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 54 DQFCHEEQNSVVCSCARGYT 73
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 61 SVVCSCARGYT 71
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 10 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 51
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 52 DQFCHEEQNSVVCSCARGYT 71
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 61
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 62 SVVCSCARGYT 72
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 38
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 11 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 52
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 53 DQFCHEEQNSVVCSCARGYT 72
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 105
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 106 SVVCSCARGYT 116
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 82
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 55 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 96
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 97 DQFCHEEQNSVVCSCARGYT 116
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 332 EKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKI--NGYTCVCAPGYSGKECSININ 388
E C+C G A H V C CFNG TCQ + + + C C G++GK C I+
Sbjct: 32 EYCWCNSGRAQCH-SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 288 SVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
SV + C P C NGGTC+ L F C CP G+ GK CE
Sbjct: 45 SVPVKSCSEPR-CFNGGTCQQALYFSD---FVCQCPEGFAGKSCE 85
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 384 SININECESSPCLHGATCIDEV--ATFSCVCPKGLTGRLCETN 424
S+ + C C +G TC + + F C CP+G G+ CE +
Sbjct: 45 SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C++ + YTC C G+ GK C + + C C +E
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 60
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 61 SVVCSCARGYT 71
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 10 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 51
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 52 DQFCHEEQNSVVCSCARGYT 71
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE---CESSPCLHGATCIDE 404
D D+C ++PC N C++ + YTC C G+ GK C + + ++ C C +E
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC--DQFCHEE 98
Query: 405 VATFSCVCPKGLT 417
+ C C +G T
Sbjct: 99 QNSVVCSCARGYT 111
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C D + ++C C +G G+ CE
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 50 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 91
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 92 DQFCHEEQNSVVCSCARGYT 111
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CESSPCLHGATCIDEVA 406
D D+C ++PC N C+ + YTC C G+ GK C + + C C +E
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 61
Query: 407 TFSCVCPKGLT 417
+ C C +G T
Sbjct: 62 SVVCSCARGYT 72
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++CE+SPC + C + ++C C +G G+ CE
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCE 38
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C N G CK L + + CTC G+ GK CE F C +D +C
Sbjct: 11 CQNQGKCKXGLGE-----YTCTCLEGFEGKNCEL------FTRKLCSLDNGDC------- 52
Query: 360 GATCQNKINGYTCVCAPGYS 379
C + N C CA GY+
Sbjct: 53 DQFCHEEQNSVVCSCARGYT 72
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 262 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
C HG+C+D + CDC + G+ C E++ + L+ G C Y ++E R C+
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFL---NCSLDNGGCTHYCLEEVGWR-RCS 71
Query: 322 CPSGY 326
C GY
Sbjct: 72 CAPGY 76
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNID 426
+ C S C HG TCID + +FSC C G GR C+ +
Sbjct: 9 HPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 49/156 (31%)
Query: 235 CQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGG----KNCSVE 290
C N G C+ED TG+ C CPP + G K C +
Sbjct: 205 CMNNGVCHED-------------TGE---------------CICPPGFMGRTCEKACELH 236
Query: 291 LTGCVGPDTCLNGGTCKPY---LVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDV 347
G + C CK Y L D + C+C +G+ G C + C PGF G C
Sbjct: 237 TFGRTCKERCSGQEGCKSYVFCLPDP----YGCSCATGWKGLQCNEA-CHPGFYGPDCK- 290
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKEC 383
L C NG C ++ G C+C+PG+ G +C
Sbjct: 291 -----LRCSCNNGEMC-DRFQG--CLCSPGWQGLQC 318
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 384 SININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETN 424
+ C ++PCLHG C++ C CP G TG C+ +
Sbjct: 42 RLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 26/111 (23%)
Query: 334 CFCRPGFAG---------DHCDVDFDECLS---NPCFNGATCQNKINGYTCVCAPGY--- 378
C C PGF+ + CD D +EC + C + C N Y CVC+PGY
Sbjct: 21 CRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPV 79
Query: 379 SGKECSIN--------INECESS--PCLHGATCIDEVATFSCVCPKGLTGR 419
SG + N ++EC S C C + V ++SC C G R
Sbjct: 80 SGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPR 130
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 314 TQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLS--NPCFNGATCQNKINGYT 371
T+ ++C C GY K F + + C D DEC S + C + C N + Y+
Sbjct: 64 TEGSYDCVCSPGYEPVSGAKTF--KNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYS 120
Query: 372 CVCAPGYSGKE 382
C C PG+ +
Sbjct: 121 CRCRPGWKPRH 131
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 262 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
C HG+C+ + CDC + G+ C E++ + L+ G C Y ++E R C+
Sbjct: 23 CGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFL---NCSLDNGGCTHYCLEEVGWR-RCS 78
Query: 322 CPSGY 326
C GY
Sbjct: 79 CAPGY 83
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNID 426
C S C HG TCI + +FSC C G GR C+ +
Sbjct: 18 CASLCCGHG-TCIXGIGSFSCDCRSGWEGRFCQREVS 53
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 347 VDFDECLSNP--------CFNGATCQNKINGYTCVCAPGYSGKECSININ----ECESSP 394
VD D+CL P C TC I ++C C G+ G+ C ++ ++
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGG 63
Query: 395 CLHGATCIDEVATFSCVCPKG 415
C H C++EV C C G
Sbjct: 64 CTH--YCLEEVGWRRCSCAPG 82
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 348 DFDECLSNPCFNG-ATCQNKINGYTCVCAPGYSG-----KECSININECESSPCL-HGAT 400
D DEC +P G C N + C C GY K C ++I+EC+ P L G
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC-MDIDECQRDPLLCRGGV 60
Query: 401 CIDEVATFSCVCPKG 415
C + ++ C CP G
Sbjct: 61 CHNTEGSYRCECPPG 75
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCF-NGATCQNKINGYTCVCAP 376
F C C GY GF +D DEC +P G C N Y C C P
Sbjct: 25 FECKCDEGYES----------GFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 377 GYSGKECSININEC 390
G+ + S NI+ C
Sbjct: 75 GH---QLSPNISAC 85
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCA-PGYSGKEC 383
CLSNPC N C++ N Y C C+ GY G+ C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 654
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCA-PGYSGKEC 383
CLSNPC N C++ N Y C C+ GY G+ C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 654
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCA-PGYSGKEC 383
CLSNPC N C++ N Y C C+ GY G+ C
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSC 429
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 373 VCAPGYS---GKECSININECESSPCL-HGATCIDEVATFSCVCPKGL----TGRLC 421
+C GYS G +C +I+ECE P + C++ +F C CP G+ TGR+C
Sbjct: 91 ICGKGYSRIKGTQCE-DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Query: 306 CKPYLVDETQHRFNCTCPSGY----HGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
CK + + + F C C G EK C+ G C +F +C+ NP
Sbjct: 13 CKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACG-EFGQCIENPD---- 67
Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCI----DEVATFSCVCPKG 415
++N Y C C GY+ KE + ++ C+ C CI E+ + C C G
Sbjct: 68 --PAQVNMYKCGCIEGYTLKEDTCVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIG 123
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 56/158 (35%), Gaps = 22/158 (13%)
Query: 262 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
C G+CV+ Y CDCPP + + GCV DT G C YL
Sbjct: 12 CISGNCVNTPGSYICDCPPDF---ELNPTRVGCV--DT--RSGNC--YLDIR-------- 54
Query: 322 CPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGK 381
P G +G G + C + PC C G+
Sbjct: 55 -PRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPN 113
Query: 382 ECSI---NINECESSPCL-HGATCIDEVATFSCVCPKG 415
++ +I+EC+ P L G CI+ +F C CP G
Sbjct: 114 PITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININ 388
C + C C IN YTC C PG+SG +C +N
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 184 YWELPEIRDCTSNPCLNDGVCVDEVYKGRY-WELPEIR---DCTSNPCLNDCV-NPCQNG 238
++ + ++R P + + + VDE++ RY + + +I+ C N CV + +
Sbjct: 256 FFTVTDLRIRLLRPAVGE-IFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLT 314
Query: 239 GKCNEDETGNYDC-TCDALHTGDPCKHGSCVDKRAGYFCDCPPTY---GGKNCSVELTGC 294
+C + TG DC C + G P GS + G C P+ G C EL C
Sbjct: 315 CECEHNTTGP-DCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHC 373
Query: 295 VGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFC 336
NGGTC + C CP+ Y G +CEK C
Sbjct: 374 Q------NGGTC--------HNNVRCLCPAAYTGILCEKLRC 401
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 56/158 (35%), Gaps = 22/158 (13%)
Query: 262 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
C G+CV+ Y CDCPP + V GCV DT G C YL
Sbjct: 12 CISGNCVNTPGSYICDCPPDFELNPTRV---GCV--DT--RSGNC--YLDIR-------- 54
Query: 322 CPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGK 381
P G +G G + C + PC C G+
Sbjct: 55 -PRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPN 113
Query: 382 ECSI---NINECESSPCL-HGATCIDEVATFSCVCPKG 415
++ +I+EC+ P L G CI+ +F C CP G
Sbjct: 114 PITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKEC 383
C + C C IN YTC C PG+SG +C
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 367 INGYTCVCAPGYSGKECSIN 386
ING C+C PGYSG C I+
Sbjct: 199 INGTKCICDPGYSGPTCKIS 218
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 367 INGYTCVCAPGYSGKECSIN 386
ING C+C PGYSG C I+
Sbjct: 199 INGTKCICDPGYSGPTCKIS 218
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 288 SVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDV 347
++ G +G + CL+ Y+ ++ + + C CP G+ +C
Sbjct: 20 NLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRC------------E 67
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYS 379
D DEC +P C N GY C C G+
Sbjct: 68 DIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.505
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,864,535
Number of Sequences: 62578
Number of extensions: 773528
Number of successful extensions: 2252
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 863
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)