RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11059
(429 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 127 bits (322), Expect = 7e-36
Identities = 44/97 (45%), Positives = 62/97 (63%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
+C C G+ G C++D +EC+SNPC N ATC ++I + C+C PGY G C +N +EC S
Sbjct: 29 ECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS 88
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
SPCLH C+D++ F C CP G TG LC+ ++
Sbjct: 89 SPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHIL 125
Score = 114 bits (287), Expect = 9e-31
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 260 DPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
+PC+H G C++ + C C Y G C +++ CV + C N TC + F
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV-SNPCQNDATCL-----DQIGEF 66
Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY 378
C C PG+ G HC+V+ DEC S+PC + C +KIN + C C G+
Sbjct: 67 QCICM--------------PGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGF 112
Query: 379 SGKECSININECESSPCLHG 398
+G C ++++ + +
Sbjct: 113 TGHLCQVDLHHILDAQKMVW 132
Score = 106 bits (266), Expect = 7e-28
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 346 DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEV 405
DVD +NPC + C N + + C C GY+G C I++NEC S+PC + ATC+D++
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 63
Query: 406 ATFSCVCPKGLTGRLCETNIDDCE 429
F C+C G G CE N D+C
Sbjct: 64 GEFQCICMPGYEGVHCEVNTDECA 87
Score = 63.8 bits (156), Expect = 1e-12
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTI 121
PC + C L +EC C GY ++ +C SNPC ND C+ + +
Sbjct: 14 PCEHAGKCINTLGS--FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICM 71
Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPC 170
Y+G +CE+ +C+S+PCL++G C+D + G C++ ++
Sbjct: 72 PGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV-DLHHILDAQK 129
Query: 171 LNDG 174
+
Sbjct: 130 MVWN 133
Score = 57.6 bits (140), Expect = 2e-10
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 29/145 (20%)
Query: 12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
C NPC++ GKC + G+++C C +T CE ++ C +
Sbjct: 8 CSLGANPCEHAGKC-INTLGSFECQCLQGYT------------GPRCEIDVNE--CVSN- 51
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYK------EIRDCTSNPCLNDGVCVWMFD----VTI 121
PC N ATC Q+ E ++C+C PGY+ +C S+PCL++G C+ +
Sbjct: 52 PCQNDATCLDQIGE--FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECP 109
Query: 122 QVYKGRYCELPEIGDCSSNPCLNDG 146
+ G C++ ++ +
Sbjct: 110 TGFTGHLCQV-DLHHILDAQKMVWN 133
Score = 54.9 bits (133), Expect = 2e-09
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 58/162 (35%)
Query: 164 DCSSNPCLNDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVDEV---- 208
+NPC + G C++ Y G E+ ++ +C SNPC ND C+D++
Sbjct: 9 SLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI-DVNECVSNPCQNDATCLDQIGEFQ 67
Query: 209 ------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPC 262
Y+G + E+ +C S+PCL+
Sbjct: 68 CICMPGYEGVHCEV-NTDECASSPCLH--------------------------------- 93
Query: 263 KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCV-GPDTCLNG 303
+G C+DK + C+CP + G C V+L + N
Sbjct: 94 -NGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134
Score = 54.1 bits (131), Expect = 3e-09
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 384 SININECE--SSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
+ +++EC ++PC H CI+ + +F C C +G TG CE ++++C
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV 49
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 122 bits (307), Expect = 1e-33
Identities = 49/137 (35%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
C NGG C P L D + F+C CP G+ C + + C NPC N
Sbjct: 8 CENGGICLPGLADGS---FSCECPDGFTDPNCSSVVEVA--SDEEEPTSAGPCTPNPCHN 62
Query: 360 GATCQ-------NKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVC 412
G TC+ + GY C C G++G C NINECE PC +G C D VA +SC C
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCEC 122
Query: 413 PKGLTGRLCETNIDDCE 429
P GR C+
Sbjct: 123 PGEFMGRNCQYKGGGHH 139
Score = 84.8 bits (210), Expect = 6e-20
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 350 DECLSNPCFNGATCQNKI--NGYTCVCAPGYSGKECSINI------------NECESSPC 395
D C NPC NG C + ++C C G++ CS + C +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 396 LHGATCI-------DEVATFSCVCPKGLTGRLCETNIDDCE 429
+G TC D + C CP+G G C+ NI++CE
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE 101
Score = 61.3 bits (149), Expect = 1e-11
Identities = 39/179 (21%), Positives = 52/179 (29%), Gaps = 54/179 (30%)
Query: 192 DCTSNPCLNDGVCVDEVYKGRY--------------WELPEIRDCTSNPCLNDCV-NPCQ 236
C NPC N G+C+ + G + + D C NPC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 237 NGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVG 296
NGG C E D GY C CP + G +C + C
Sbjct: 62 NGGTCEISE-------------------AYRGDTFIGYVCKCPRGFNGIHCQHNINECE- 101
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSN 355
+ C NGG C D ++C CP F G +C +
Sbjct: 102 VEPCKNGGIC----TDLV-ANYSCECP--------------GEFMGRNCQYKGGGHHHH 141
Score = 58.6 bits (142), Expect = 9e-11
Identities = 33/137 (24%), Positives = 46/137 (33%), Gaps = 42/137 (30%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYK------------------EIRDCTSNPCLNDGVC 113
PC NG C P L + + C CP G+ CT NPC N G C
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66
Query: 114 VWMFDVTIQV-----------YKGRYCELPEIGDCSSNPCLNDGVCVDV----------- 151
+ G +C+ I +C PC N G+C D+
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGFNGIHCQH-NINECEVEPCKNGGICTDLVANYSCECPGE 125
Query: 152 YKGRYCELPEIGDCSSN 168
+ GR C+ + G +
Sbjct: 126 FMGRNCQY-KGGGHHHH 141
Score = 52.0 bits (125), Expect = 2e-08
Identities = 37/187 (19%), Positives = 47/187 (25%), Gaps = 74/187 (39%)
Query: 136 DCSSNPCLNDGVCVDV-------------YKGRYCELPEIGDCSSNPCLNDGVCVDVYKG 182
C NPC N G+C+ + C + S
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSS-VVEVASDEEEPTS--------- 51
Query: 183 RYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCN 242
CT NPC N G C
Sbjct: 52 -------AGPCTPNPCHNGGTCEIS-------------------------------EAYR 73
Query: 243 EDETGNYDCTCDALHTG------------DPCKHG-SCVDKRAGYFCDCPPTYGGKNCSV 289
D Y C C G +PCK+G C D A Y C+CP + G+NC
Sbjct: 74 GDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQY 133
Query: 290 ELTGCVG 296
+ G
Sbjct: 134 KGGGHHH 140
Score = 48.9 bits (117), Expect = 2e-07
Identities = 30/119 (25%), Positives = 39/119 (32%), Gaps = 33/119 (27%)
Query: 17 NPCQNGGKCNEDETGN-YDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP---- 71
NPC+NGG C + C C T +C + + P
Sbjct: 6 NPCENGGICLPGLADGSFSCECPDGFT------------DPNCSSVVEVASDEEEPTSAG 53
Query: 72 -----PCLNGATCRPQLTEQL-----YECVCPPGY------KEIRDCTSNPCLNDGVCV 114
PC NG TC + Y C CP G+ I +C PC N G+C
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICT 112
Score = 32.4 bits (74), Expect = 0.10
Identities = 25/86 (29%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 17 NPCQNGGKC------NEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTA 70
NPC NGG C D Y C C IHC+ I+ C
Sbjct: 58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN------------GIHCQHNINE--CEVE 103
Query: 71 PPCLNGATCRPQLTEQLYECVCPPGY 96
PC NG C + Y C CP +
Sbjct: 104 -PCKNGGICTDLVAN--YSCECPGEF 126
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 102 bits (256), Expect = 2e-26
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE-CES 392
+ D D+C ++PC N C++ + YTC C G+ GK C + + C
Sbjct: 27 EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL 86
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
C +E + C C +G T
Sbjct: 87 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123
Score = 93.5 bits (233), Expect = 3e-23
Identities = 30/143 (20%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 260 DPCKHGSC-VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
C +C ++ F D T N + C C N G CK + +
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCK-----DGLGEY 63
Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY 378
CTC G+ GK CE C + C + N C CA GY
Sbjct: 64 TCTCLEGFEGKNCEL-------------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
Query: 379 SGKECSININECESSPCLHGATC 401
+ + PC
Sbjct: 111 TLADNGKACIPTGPYPCGKQTLE 133
Score = 80.0 bits (198), Expect = 3e-18
Identities = 15/77 (19%), Positives = 26/77 (33%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCV 411
L C + + ++CE+SPC + C D + ++C
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 412 CPKGLTGRLCETNIDDC 428
C +G G+ CE
Sbjct: 67 CLEGFEGKNCELFTRKL 83
Score = 70.0 bits (172), Expect = 7e-15
Identities = 21/145 (14%), Positives = 29/145 (20%), Gaps = 33/145 (22%)
Query: 233 NPCQNGGKCNEDETGNYDCTCDALHTGDPC-------------KHGSCVDKRAGYFCDCP 279
C C+ +E D + G C D Y C C
Sbjct: 10 RECMEET-CSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 280 PTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPG 339
+ GKNC + D C + C C G
Sbjct: 69 EGFEGKNCELFTRKLCSLDNGDCDQFCHEE-------------QNSVV------CSCARG 109
Query: 340 FAGDHCDVDFDECLSNPCFNGATCQ 364
+ PC +
Sbjct: 110 YTLADNGKACIPTGPYPCGKQTLER 134
Score = 51.1 bits (123), Expect = 3e-08
Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 24/126 (19%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFDVTI---- 121
C+ + E K+ C ++PC N G C
Sbjct: 11 ECMEETCSYEEARE--VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELPEIGDCSSNPC 170
+ ++G+ CEL CS + D C + Y PC
Sbjct: 69 EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK-ACIPTGPYPC 127
Query: 171 LNDGVC 176
+
Sbjct: 128 GKQTLE 133
Score = 49.6 bits (119), Expect = 1e-07
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 23/126 (18%)
Query: 100 RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDV-------- 151
R+C C + +F+ + + + + C ++PC N G C D
Sbjct: 10 RECMEETCSYEEAR-EVFEDSDKTNEFWNKYK-DGDQCETSPCQNQGKCKDGLGEYTCTC 67
Query: 152 ---YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRY------WELP----EIRDCTSNPC 198
++G+ CEL CS + D C + + L PC
Sbjct: 68 LEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 127
Query: 199 LNDGVC 204
+
Sbjct: 128 GKQTLE 133
Score = 44.2 bits (105), Expect = 7e-06
Identities = 23/103 (22%), Positives = 29/103 (28%), Gaps = 23/103 (22%)
Query: 17 NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
+PCQN GKC +D G Y CTC +CE +
Sbjct: 48 SPCQNQGKC-KDGLGEYTCTCLEGFE------------GKNCELFTRK--LCSLDNGDCD 92
Query: 77 ATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVC 113
C + C C GY K PC +
Sbjct: 93 QFCHEEQNS--VVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 36.5 bits (85), Expect = 0.004
Identities = 6/38 (15%), Positives = 9/38 (23%)
Query: 392 SSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
C+ +E K + D CE
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE 46
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 100 bits (251), Expect = 1e-25
Identities = 22/96 (22%), Positives = 32/96 (33%)
Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS 393
VD D+C NPC NG C++ IN Y C C G+ GK C ++ +
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 394 PCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
+ C C G + +
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAV 128
Score = 94.3 bits (235), Expect = 2e-23
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 20/130 (15%)
Query: 274 YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 333
F + T V+ C P+ CLNGG CK + + Y +
Sbjct: 31 VFENTEKTNEFWKQYVDGDQCE-PNPCLNGGLCKDDI-------------NSY------E 70
Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS 393
C+C+ GF G +C++D + N + C C GY +
Sbjct: 71 CWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF 130
Query: 394 PCLHGATCID 403
PC +
Sbjct: 131 PCGRVSVSHS 140
Score = 47.3 bits (113), Expect = 1e-06
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 26/129 (20%)
Query: 100 RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDV-------- 151
R+C C + +F+ T + + + + C NPCLN G+C D
Sbjct: 16 RECIEEKCSFEEAR-EVFENTEKTNEFWKQYV-DGDQCEPNPCLNGGLCKDDINSYECWC 73
Query: 152 ---YKGRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYWELPEIRDCTSNP 197
++G+ CEL + N Y+ + + P
Sbjct: 74 QVGFEGKNCEL-DATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK-SCKPAVPFP 131
Query: 198 CLNDGVCVD 206
C V
Sbjct: 132 CGRVSVSHS 140
Score = 46.6 bits (111), Expect = 2e-06
Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 24/103 (23%)
Query: 17 NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
NPC NGG C +D+ +Y+C C +CE + C
Sbjct: 54 NPCLNGGLC-KDDINSYECWCQVGFE------------GKNCELDAT---CNIKNGRCKQ 97
Query: 77 ATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVC 113
++ C C GY K + PC V
Sbjct: 98 FCKTGADSK--VLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVS 138
Score = 45.0 bits (107), Expect = 6e-06
Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 17/98 (17%)
Query: 96 YKEIRDCTSNPCLNDGVCVWMFDVTIQV----YKGRYCELPEIGDCSSNPCLNDGVCVDV 151
Y + C NPCLN G+C + ++G+ CEL + N
Sbjct: 45 YVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL-DATCNIKNGRCKQFCKTGA 103
Query: 152 -----------YKGRYCELPEIGDCSSNPCLNDGVCVD 178
Y+ + PC V
Sbjct: 104 DSKVLCSCTTGYRLAPDQK-SCKPAVPFPCGRVSVSHS 140
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/178 (12%), Positives = 37/178 (20%), Gaps = 83/178 (46%)
Query: 189 EIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGN 248
+ C NPCLN G+C D++ +
Sbjct: 47 DGDQCEPNPCLNGGLCKDDI--------------------------------------NS 68
Query: 249 YDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKP 308
Y+C C + GKNC ++ T +
Sbjct: 69 YECWC-------------------------QVGFEGKNCELDATCNIKNG-RCKQFCKTG 102
Query: 309 YLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK 366
S C C G+ + PC + +
Sbjct: 103 A-------------DSKVL------CSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSP 141
Score = 42.3 bits (100), Expect = 4e-05
Identities = 18/133 (13%), Positives = 31/133 (23%), Gaps = 22/133 (16%)
Query: 28 DETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQL 87
+E +++ + +T PCLNG C+ +
Sbjct: 20 EEKCSFEEAREVFENTE------KTNEFWKQYVDGDQ---CEPNPCLNGGLCKDDINS-- 68
Query: 88 YECVCPPGY------KEIRDCTSNPCLNDGVCVWMFDVTIQV----YKGRYCELPEIGDC 137
YEC C G+ + N + Y+ +
Sbjct: 69 YECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK-SCKPA 127
Query: 138 SSNPCLNDGVCVD 150
PC V
Sbjct: 128 VPFPCGRVSVSHS 140
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 102 bits (255), Expect = 1e-25
Identities = 31/171 (18%), Positives = 46/171 (26%), Gaps = 24/171 (14%)
Query: 260 DPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 319
+ C + + F D T N + C C N G CK + +
Sbjct: 15 ETCSYEEARE----VFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCK-----DGLGEYT 64
Query: 320 CTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS 379
CTC G+ GK CE C + C + N C CA GY+
Sbjct: 65 CTCLEGFEGKNCEL-------------FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111
Query: 380 GKECSININECESSPCLHGATCIDEVATFSCVCPKGLT-GRLCETNIDDCE 429
+ PC + + G + D +
Sbjct: 112 LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAAD 162
Score = 99.1 bits (247), Expect = 1e-24
Identities = 29/200 (14%), Positives = 48/200 (24%), Gaps = 23/200 (11%)
Query: 220 RDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKH-GSCVDKRAGYFCDC 278
R+C C + + ++ PC++ G C D Y C C
Sbjct: 10 RECMEETCSYEEA--REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTC 67
Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
+ GKNC + D C + C C
Sbjct: 68 LEGFEGKNCELFTRKLCSLDNGDCDQFCHEE-------------QNSVV------CSCAR 108
Query: 339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS-GKECSININECESSPCLH 397
G+ PC + K + + G + + + P +
Sbjct: 109 GYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTEN 168
Query: 398 GATCIDEVATFSCVCPKGLT 417
+D T LT
Sbjct: 169 PFDLLDFNQTQPERGDNNLT 188
Score = 69.4 bits (170), Expect = 5e-14
Identities = 15/77 (19%), Positives = 26/77 (33%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCV 411
L C + + ++CE+SPC + C D + ++C
Sbjct: 7 HLERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 412 CPKGLTGRLCETNIDDC 428
C +G G+ CE
Sbjct: 67 CLEGFEGKNCELFTRKL 83
Score = 51.3 bits (123), Expect = 8e-08
Identities = 23/166 (13%), Positives = 38/166 (22%), Gaps = 33/166 (19%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCVWMFD----VTI 121
C+ + E K+ C ++PC N G C +
Sbjct: 11 ECMEETCSYEEARE--VFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCL 68
Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP----------EIGDCSSNPCL 171
+ ++G+ CEL CS + D C + C PC
Sbjct: 69 EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCG 128
Query: 172 NDGVCVDV-----------YKGRYWELPEIRDCTSNPCLNDGVCVD 206
+ +P N +D
Sbjct: 129 KQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLD 174
Score = 46.7 bits (111), Expect = 3e-06
Identities = 20/130 (15%), Positives = 30/130 (23%), Gaps = 25/130 (19%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGY------KEIRD-CTSNPCLNDGVCVWMFDVTI--- 121
PC N C+ L E Y C C G+ R C+ + D C + +
Sbjct: 49 PCQNQGKCKDGLGE--YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106
Query: 122 -QVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP-----------EIGDCSSNP 169
+ Y PC + +P
Sbjct: 107 ARGYTLADNGK-ACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDP 165
Query: 170 CLNDGVCVDV 179
N +D
Sbjct: 166 TENPFDLLDF 175
Score = 29.3 bits (66), Expect = 1.6
Identities = 6/38 (15%), Positives = 9/38 (23%)
Query: 392 SSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
C+ +E K + D CE
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCE 46
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 101 bits (253), Expect = 3e-24
Identities = 55/264 (20%), Positives = 77/264 (29%), Gaps = 52/264 (19%)
Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQ--NGGKCNEDETGNYD 250
+ + + V+ G + PCL E
Sbjct: 76 RSLDKGIMADPTVNVPLLGTVPHKASV-VQVGFPCLGKQDGVAAFEVDVIVMNSEGNTIL 134
Query: 251 CTCDALHTGDPCKHGSCVDK-------RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNG 303
T C+ C C+CP + G +C + C+NG
Sbjct: 135 KTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEK----ALCTPRCMNG 190
Query: 304 GTCKPYLVDETQHRFNCTCPSGYHGKICE------------------KCFCRPGFAGDHC 345
G C C CP G++G C+ KC C PG G+ C
Sbjct: 191 GLC--------VTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQC 242
Query: 346 DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEV 405
++ PC NG C I C C+ GY G CS + E C TC +
Sbjct: 243 EIS---KCPQPCRNGGKC---IGKSKCKCSKGYQGDLCSKPVCEP---GCGAHGTCHE-- 291
Query: 406 ATFSCVCPKGLTGRLCETNIDDCE 429
C C +G GR C +
Sbjct: 292 -PNKCQCQEGWHGRHCNKRYEASL 314
Score = 89.9 bits (223), Expect = 3e-20
Identities = 54/198 (27%), Positives = 64/198 (32%), Gaps = 53/198 (26%)
Query: 229 NDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCK----------HGSCVDKRAGYFCDC 278
+C C+NGG CNE C C G C+ G CV FC C
Sbjct: 149 AECPGGCRNGGFCNE----RRICECPDGFHGPHCEKALCTPRCMNGGLCVT---PGFCIC 201
Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------ 332
PP + G NC TC NGGTC + C CP G G+ CE
Sbjct: 202 PPGFYGVNCDK----ANCSTTCFNGGTC--------FYPGKCICPPGLEGEQCEISKCPQ 249
Query: 333 ------------KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
KC C G+ GD C E C TC C C G+ G
Sbjct: 250 PCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEP---GCGAHGTC---HEPNKCQCQEGWHG 303
Query: 381 KECSININECESSPCLHG 398
+ C+ H
Sbjct: 304 RHCNKRYEASLIGTKHHH 321
Score = 59.1 bits (143), Expect = 7e-10
Identities = 48/286 (16%), Positives = 75/286 (26%), Gaps = 74/286 (25%)
Query: 42 TVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIR- 100
V +G + P + A ++ +
Sbjct: 89 NVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSE--GNTILKTPQNAIFFKTC 146
Query: 101 --DCTSNPCLNDGVCVWMFDVTIQV-YKGRYCELPEIGDCSSNPCLNDGVCVDV------ 151
C N G C + G +CE + C+N G+CV
Sbjct: 147 QQAECPGGCRNGGFCNERRICECPDGFHGPHCEK----ALCTPRCMNGGLCVTPGFCICP 202
Query: 152 --YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCV-DEV 208
+ G C+ S C N G C G C+
Sbjct: 203 PGFYGVNCD----KANCSTTCFNGGTCF----------------------YPGKCICPPG 236
Query: 209 YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPC------ 262
+G E+ + C PC+NGGKC G C C + GD C
Sbjct: 237 LEGEQCEISK------------CPQPCRNGGKC----IGKSKCKCSKGYQGDLCSKPVCE 280
Query: 263 ----KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGG 304
HG+C + C C + G++C+ + +
Sbjct: 281 PGCGAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
Score = 50.6 bits (121), Expect = 4e-07
Identities = 44/245 (17%), Positives = 62/245 (25%), Gaps = 40/245 (16%)
Query: 12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
PC + +T+ C+
Sbjct: 102 VVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIF--FKTCQQAECP------G 153
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYKEIR---DCTSNPCLNDGVCVWMFDVTIQV-YKGR 127
C NG C + C CP G+ + C+N G+CV + G
Sbjct: 154 GCRNGGFCNER-----RICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGV 208
Query: 128 YCELPEIGDCSSNPCLNDGVCVDVYK--------GRYCELPEIGDCSSNPCLNDGVCVDV 179
C+ S C N G C K G CE+ PC N G C+
Sbjct: 209 NCD----KANCSTTCFNGGTCFYPGKCICPPGLEGEQCEI----SKCPQPCRNGGKCIGK 260
Query: 180 YK-----GRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNP 234
K G +L C C G C + K + E R C +
Sbjct: 261 SKCKCSKGYQGDLCSKPVC-EPGCGAHGTCHEP-NKCQCQEGWHGRHCNKRYEASLIGTK 318
Query: 235 CQNGG 239
+
Sbjct: 319 HHHHH 323
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 94.3 bits (235), Expect = 2e-23
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 331 CEKCFCRP-GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
E D D+C S+PC NG +C++++ Y C C P + G+ C + ++
Sbjct: 28 REIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 87
Query: 390 CESSPCLHG---ATCIDEVAT-FSCVCPKGLTGRLCETNIDDCE 429
+G C D T SC C +G + +
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 131
Score = 82.4 bits (204), Expect = 4e-19
Identities = 32/146 (21%), Positives = 44/146 (30%), Gaps = 25/146 (17%)
Query: 261 PCKHGSCVDKRAGY-FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 319
CK C + A F D T + C C NGG+CK + +
Sbjct: 16 ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA-SSPCQNGGSCK-----DQLQSYI 69
Query: 320 CTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ----NKINGYTCVCA 375
C C P F G +C+ D+ L NG Q + +C C
Sbjct: 70 CFCL--------------PAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCH 115
Query: 376 PGYSGKECSININECESSPCLHGATC 401
GYS ++ PC
Sbjct: 116 EGYSLLADGVSCTPTVEYPCGKIPIL 141
Score = 57.3 bits (139), Expect = 3e-10
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 260 DPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 318
PC+ GSC D+ Y C C P + G+NC + NGG C+ Y D T +
Sbjct: 53 SPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGG-CEQYCSDHTGTKR 110
Query: 319 NCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
+C C G++ V + PC +
Sbjct: 111 SCRCH--------------EGYSLLADGVSCTPTVEYPCGKIPILE 142
Score = 42.7 bits (101), Expect = 3e-05
Identities = 24/130 (18%), Positives = 36/130 (27%), Gaps = 28/130 (21%)
Query: 100 RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDV-------- 151
R+C C + +F + + C+S+PC N G C D
Sbjct: 15 RECKEEQCSFEEAR-EIFKDAERTKLFWISYS-DGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 152 ---YKGRYCELPEIGDCSSNPCLNDG---VCVDVYKGRY-------WELP----EIRDCT 194
++GR CE D N G C D + + L
Sbjct: 73 LPAFEGRNCET-HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 131
Query: 195 SNPCLNDGVC 204
PC +
Sbjct: 132 EYPCGKIPIL 141
Score = 38.5 bits (90), Expect = 9e-04
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 21/100 (21%)
Query: 96 YKEIRDCTSNPCLNDGVCVWMFDVTIQV----YKGRYCELPEIGDCSSNPCLNDG----- 146
Y + C S+PC N G C I ++GR CE D N G
Sbjct: 44 YSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET-HKDDQLICVNENGGCEQYC 102
Query: 147 ----------VCVDVYKGRYCELPEIGDCSSNPCLNDGVC 176
C + Y + PC +
Sbjct: 103 SDHTGTKRSCRCHEGYSLLADGV-SCTPTVEYPCGKIPIL 141
Score = 36.9 bits (86), Expect = 0.003
Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 24/105 (22%)
Query: 17 NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
+PCQNGG C +D+ +Y C C +CET +Q NG
Sbjct: 53 SPCQNGGSC-KDQLQSYICFCLPAFE------------GRNCETHKDDQ---LICVNENG 96
Query: 77 ATCRPQLTEQ--LYECVCPPGY------KEIRDCTSNPCLNDGVC 113
+ C C GY PC +
Sbjct: 97 GCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 89.0 bits (221), Expect = 4e-21
Identities = 44/183 (24%), Positives = 64/183 (34%), Gaps = 42/183 (22%)
Query: 261 PCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNC 320
HGS C Y G C+ C D C N
Sbjct: 7 HHHHGSIEG---RSAVTCDDYYYGFGCNKF---CRPRDDFFGHYAC--------DQNGNK 52
Query: 321 TCPSGYHGKICE-------------------KCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
TC G+ G C C C+ G+ G +CD +C+ +P
Sbjct: 53 TCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD----KCIPHPGCVHG 108
Query: 362 TCQNKINGYTCVCAPGYSGKECSININECES-SPCLHGATCIDE-VATFSCVCPKGLTGR 419
C + C+C + G+ C ++N C + PCL+G TC + + C CP+G +G
Sbjct: 109 IC---NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Query: 420 LCE 422
CE
Sbjct: 166 NCE 168
Score = 73.2 bits (180), Expect = 2e-15
Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 46/184 (25%)
Query: 231 CVNPCQNGGKCNEDETGNYDCTCDALHTG----------DPCKHGSCVDKRAGYFCDCPP 280
+ + G G TCD + G D D+ C
Sbjct: 3 GSHHHHHHGSIE----GRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQ--NGNKTCME 56
Query: 281 TYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE-------- 332
+ G C+ + G+CK +C C G+ G C+
Sbjct: 57 GWMGPECNRAICRQ---GCSPKHGSCKLP--------GDCRCQYGWQGLYCDKCIPHPGC 105
Query: 333 ---------KCFCRPGFAGDHCDVDFDECLSN-PCFNGATCQNK-INGYTCVCAPGYSGK 381
+C C + G CD D + C ++ PC NG TC N + Y C C GYSG
Sbjct: 106 VHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Query: 382 ECSI 385
C I
Sbjct: 166 NCEI 169
Score = 59.3 bits (144), Expect = 1e-10
Identities = 41/181 (22%), Positives = 56/181 (30%), Gaps = 27/181 (14%)
Query: 165 CSSNPCLNDGVCVDVYKGR----YWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIR 220
S+ + G Y+ + C D+ E
Sbjct: 2 RGSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGP 61
Query: 221 DCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGD---------PCKHGSCVDKR 271
+C C C G C DC C G C HG C +
Sbjct: 62 ECNRAICRQGC---SPKHGSCKLP----GDCRCQYGWQGLYCDKCIPHPGCVHGICNE-- 112
Query: 272 AGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 331
+ C C +GG+ C +L C CLNGGTC + ++ C+CP GY G C
Sbjct: 113 -PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTC----SNTGPDKYQCSCPEGYSGPNC 167
Query: 332 E 332
E
Sbjct: 168 E 168
Score = 50.8 bits (122), Expect = 7e-08
Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 44/181 (24%)
Query: 17 NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
+ + G G TCD + C C
Sbjct: 5 HHHHHHGSIE----GRSAVTCDDYYY------------GFGCNKF-----CRPRDDFFGH 43
Query: 77 ATCRPQLTEQLYECVCPPGYK----EIRDCTSNPCLNDGVCVWMFDVTIQV-YKGRYCEL 131
C +Q C G+ C G C D Q ++G YC+
Sbjct: 44 YAC-----DQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD- 97
Query: 132 PEIGDCSSNPCLNDGVCVDVYK--------GRYCELPEIGDCSSNPCLNDGVCVDVYKGR 183
C +P G+C + ++ G+ C+ + PCLN G C + +
Sbjct: 98 ----KCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDK 153
Query: 184 Y 184
Y
Sbjct: 154 Y 154
Score = 47.7 bits (114), Expect = 8e-07
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 8/77 (10%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCV 411
S+ + + C Y G C+ C G D+ +
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQ--NGNKT 53
Query: 412 CPKGLTGRLCETNIDDC 428
C +G G C I
Sbjct: 54 CMEGWMGPECNRAICRQ 70
Score = 28.1 bits (63), Expect = 3.7
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 19/81 (23%)
Query: 16 RNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLN 75
+P G CN + C C+ C+ ++ C T PCLN
Sbjct: 101 PHPGCVHGICN----EPWQCLCETNWG------------GQLCDKDLN--YCGTHQPCLN 142
Query: 76 GATCRPQLTEQLYECVCPPGY 96
G TC ++ Y+C CP GY
Sbjct: 143 GGTCSNTGPDK-YQCSCPEGY 162
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 74.4 bits (183), Expect = 1e-16
Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 284 GKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGD 343
G C V C GTC + F+C C SG+ G+ C++
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCI-----DGIGSFSCDCRSGWEGRFCQRE--------- 51
Query: 344 HCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCID 403
V F C + C ++ C CAPGY + + + PC ++
Sbjct: 52 ---VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Query: 404 E 404
+
Sbjct: 109 K 109
Score = 73.6 bits (181), Expect = 2e-16
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 342 GDHC-DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS--ININECESSPCLHG 398
GD C + + ++ C TC + I ++C C G+ G+ C ++ C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 399 ATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
C++EV C C G
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96
Score = 48.2 bits (115), Expect = 2e-07
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 20/115 (17%)
Query: 253 CDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCV-GPDTCLNGGTCKPYLV 311
+ C HG+C+D + CDC + G+ C E++ D C
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCL---- 69
Query: 312 DETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK 366
E C+C PG+ + + PC K
Sbjct: 70 -EEVGWRRCSCA--------------PGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109
Score = 45.5 bits (108), Expect = 2e-06
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 377 GYSGKECSIN-INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
G +C + + +S C TCID + +FSC C G GR C+ +
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLN 56
Score = 35.5 bits (82), Expect = 0.006
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 22/110 (20%)
Query: 11 PCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTA 70
+ C G C D G++ C C + C+ +S C+
Sbjct: 14 LEHPCASLCCGHGTC-IDGIGSFSCDCRSGWE------------GRFCQREVSFLNCSLD 60
Query: 71 PPCLNGATCRPQLTEQLYECVCPPGY------KEIRDCTSNPCLNDGVCV 114
C ++ C C PGY + PC +
Sbjct: 61 N-GGCTHYCLEEVGW--RRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRM 107
Score = 35.5 bits (82), Expect = 0.007
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 22/104 (21%)
Query: 126 GRYCELPEIGDCSSNPCLNDGVCVDV-----------YKGRYCELP-EIGDCSSNPCLND 173
G C + + ++ C G C+D ++GR+C+ +CS +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 174 GVCVDVYKGRY------WELP----EIRDCTSNPCLNDGVCVDE 207
C++ R ++L + PC +++
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEK 109
Score = 30.8 bits (70), Expect = 0.24
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 62 ISNQICTTAPPCLNGATCRPQLTEQLYECVCPPGY--------KEIRDCTSNPCLNDGVC 113
+ A C TC + + C C G+ +C+ + C
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGS--FSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68
Query: 114 VWMFDVTI----QVYKGRYCELPEIGDCSSNPCLNDGVCVD 150
+ YK L + PC ++
Sbjct: 69 LEEVGWRRCSCAPGYKLGDDLL-QCHPAVKFPCGRPWKRME 108
Score = 29.3 bits (66), Expect = 0.94
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 186 ELPEIRDCTSNPCLNDGVCVDEVYKGRYWELP--EIRDCTSNPCLNDC-VNPCQNGGKCN 242
+ + ++ C G C+D + E R C +C ++ C
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCL 69
Query: 243 EDETGNYDCTCDALHTGDPCKH 264
+E G C+C +
Sbjct: 70 -EEVGWRRCSCAPGYKLGDDLL 90
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 67.0 bits (164), Expect = 2e-12
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININEC---ESSPCLHGATCID 403
C+S PC + +CQ+ I GYTC C+PGY G C + NEC + C H C+
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF--CLP 60
Query: 404 EVATFSCVCPKGLTGRLCETNIDDC 428
+++C C +G
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPH 85
Score = 49.3 bits (118), Expect = 8e-07
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFN 359
CL+ G+C+ + GY C C PG+ G +C++ +EC
Sbjct: 13 CLHNGSCQDSI-------------WGY------TCTCSPGYEGSNCELAKNECHPERTDG 53
Query: 360 GA-TCQNKINGYTCVCAPGYSGKECSININECESSPC 395
C YTC CA GY E + C
Sbjct: 54 CQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 46.2 bits (110), Expect = 1e-05
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 259 GDPCK------HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 312
G PC +GSC D GY C C P Y G NC + C T C P
Sbjct: 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLP---- 60
Query: 313 ETQHRFNCTCPSGY-HGKICEKCFCRPGFAGDHC 345
Q + C+C GY G+ ++C A
Sbjct: 61 -GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVL 93
Score = 37.8 bits (88), Expect = 0.005
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 17 NPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNG 76
PC + G C +D Y CTC G CE + C +
Sbjct: 11 QPCLHNGSC-QDSIWGYTCTCSP-------GYEGSN-----CELAKNECHPERTDGCQHF 57
Query: 77 ATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMF 117
C P ++ Y C C GY+ D + C +
Sbjct: 58 --CLP--GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLT 94
Score = 36.6 bits (85), Expect = 0.011
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 96 YKEIRDCTSNPCLNDGVCVWMFDVTI----QVYKGRYCELPEIGDCSSNPCLN-DGVCVD 150
YK C S PCL++G C Y+G CEL +C C+
Sbjct: 2 YKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCEL-AKNECHPERTDGCQHFCLP 60
Query: 151 VYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYW 185
+ C + G G
Sbjct: 61 GQESYTCSCAQ-GYRLGEDHKQCVPHDQCACGVLT 94
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 57.9 bits (141), Expect = 1e-11
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
VD D+C SNPC NG +C++ IN Y C C G+ GK C +
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 385 ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
++ ++CES+PCL+G +C D++ ++ C CP G G+ CE
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 31.7 bits (73), Expect = 0.026
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 260 DPCKH-GSCVDKRAGYFCDCPPTYGGKNC 287
+PC + GSC D Y C CP + GKNC
Sbjct: 9 NPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 30.1 bits (69), Expect = 0.095
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
CLNGG+CK + + + C CP G+ GK CE
Sbjct: 11 CLNGGSCKDDI-----NSYECWCPFGFEGKNCE 38
Score = 28.6 bits (65), Expect = 0.36
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 189 EIRDCTSNPCLNDGVCVDEV 208
+ C SNPCLN G C D++
Sbjct: 2 DGDQCESNPCLNGGSCKDDI 21
Score = 28.2 bits (64), Expect = 0.42
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 133 EIGDCSSNPCLNDGVCVDVYKGRYC 157
+ C SNPCLN G C D C
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYEC 26
Score = 27.8 bits (63), Expect = 0.64
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGY 96
PCLNG +C+ + YEC CP G+
Sbjct: 10 PCLNGGSCKDDINS--YECWCPFGF 32
Score = 27.8 bits (63), Expect = 0.67
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 17 NPCQNGGKCNEDETGNYDCTC 37
NPC NGG C D+ +Y+C C
Sbjct: 9 NPCLNGGSCK-DDINSYECWC 28
Score = 27.8 bits (63), Expect = 0.70
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 161 EIGDCSSNPCLNDGVCVD 178
+ C SNPCLN G C D
Sbjct: 2 DGDQCESNPCLNGGSCKD 19
Score = 25.1 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 98 EIRDCTSNPCLNDGVCV 114
+ C SNPCLN G C
Sbjct: 2 DGDQCESNPCLNGGSCK 18
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 59.4 bits (144), Expect = 2e-11
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 299 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCF 358
C + T Y ++ R E C+C G A H V C CF
Sbjct: 5 ICRDEKTQMIYQQHQSWLR------PVLRSNRVEYCWCNSGRAQCHS-VPVKSCSEPRCF 57
Query: 359 NGATCQNKI--NGYTCVCAPGYSGKECSININE 389
NG TCQ + + + C C G++GK C I+
Sbjct: 58 NGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 90
Score = 56.7 bits (137), Expect = 1e-10
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
+ CR + P C C G + S+ + C
Sbjct: 3 QVICRDEKTQMIYQ--QHQSWLRPVLRSNRV------EYCWCNSGRAQC-HSVPVKSCSE 53
Query: 393 SPCLHGATCIDEVAT--FSCVCPKGLTGRLCETNI 425
C +G TC + F C CP+G G+ CE +
Sbjct: 54 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88
Score = 31.7 bits (72), Expect = 0.087
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGY 96
C NG TC+ L + C CP G+
Sbjct: 55 RCFNGGTCQQALYFSDFVCQCPEGF 79
Score = 29.0 bits (65), Expect = 0.71
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 10/72 (13%)
Query: 147 VCVDVYKGRYCELPEIGDCSSNPCLNDG-----VCVDVYKGRYWELPEIRDCTSNPCLND 201
+C D + P L C + ++ C+ C N
Sbjct: 5 ICRDEKTQMIYQ---QHQSWLRPVLRSNRVEYCWCNSGRAQCHSV--PVKSCSEPRCFNG 59
Query: 202 GVCVDEVYKGRY 213
G C +Y +
Sbjct: 60 GTCQQALYFSDF 71
Score = 25.9 bits (57), Expect = 9.3
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 24/55 (43%)
Query: 233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNC 287
C NGG C + + + C CP + GK+C
Sbjct: 54 PRCFNGGTCQQALYFS------------------------DFVCQCPEGFAGKSC 84
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 65.1 bits (158), Expect = 2e-11
Identities = 65/354 (18%), Positives = 93/354 (26%), Gaps = 54/354 (15%)
Query: 79 CRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCS 138
P + Y+ C G R+ C + V +T QV + E
Sbjct: 351 ALPDTLKVTYDSFCSNGVTH-RNQPRGDCDGVQINV---PITFQVKVTATECIQEQSFVI 406
Query: 139 SNPCLNDGVCVDVYKGRYCELPEIGD----CSSNPCLNDGVCVDVYKGRYWELPEIRDCT 194
D V V V C + C L G+C G + E +
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICR-CDTGYIGKNCECQTQG 465
Query: 195 SNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCD 254
+ +G C + + DC CL + E +C
Sbjct: 466 RSSQELEGSCRKDNNSII---CSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERY 522
Query: 255 ALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELT----GCVGPDTCLNGGTCKPYL 310
G C + C C P + G C E T C G C+
Sbjct: 523 NGQVCGGPGRGLCFCGK----CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN- 577
Query: 311 VDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGY 370
C C SGY +C++C P +PC +C
Sbjct: 578 --------VCECHSGYQLPLCQECPGCP----------------SPCGKYISC-----AE 608
Query: 371 TCVCAPGYSGKECSIN-INECESSPCLHGATCIDEVATFSCVCPKGLTGRLCET 423
G GK CS S+ + G TC + S C T +
Sbjct: 609 CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE---RDSEGCWVAYTLEQQDG 659
Score = 56.3 bits (135), Expect = 1e-08
Identities = 48/303 (15%), Positives = 71/303 (23%), Gaps = 49/303 (16%)
Query: 126 GRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKG--- 182
G GDC +N + V + E D V V V
Sbjct: 367 GVTHRNQPRGDCD-GVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCEC 425
Query: 183 -RYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKC 241
+ + C L G+C C + +C Q
Sbjct: 426 RCRDQSRDRSLCHGKGFLECGICR----------------CDTGYIGKNCECQTQGRSSQ 469
Query: 242 NEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCL 301
+ + D C G C+ + G+ C + C + +
Sbjct: 470 ELEGSCRKDNNSIICSGLGDCVCGQCLCHTS---DVPGKLIYGQYCECDTINCERYNGQV 526
Query: 302 NGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
GG + C C G+ G C+ G C
Sbjct: 527 CGGPGRGLCFCGK-----CRCHPGFEGSACQCERTTEGCLNPR---------RVECSGRG 572
Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLC 421
C+ C C GY C SPC +C + KG G+ C
Sbjct: 573 RCRC----NVCECHSGYQLPLCQEC--PGCPSPCGKYISCAE-----CLKFEKGPFGKNC 621
Query: 422 ETN 424
Sbjct: 622 SAA 624
Score = 54.3 bits (130), Expect = 4e-08
Identities = 43/250 (17%), Positives = 62/250 (24%), Gaps = 39/250 (15%)
Query: 192 DCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDC 251
+ ++ G C ++ + + T
Sbjct: 366 NGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIV----TVQVLP 421
Query: 252 TCDALHTGDPCKHGSCVDKRAGY--FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPY 309
C+ C K C C Y GKNC + G + G+C+
Sbjct: 422 QCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELE---GSCRK- 477
Query: 310 LVDETQHRFNCTCPSGYHGKICEKCFCRPG------FAGDHCDVDFDECLSNPCFNGATC 363
N SG +C +C C G +C+ D C +NG C
Sbjct: 478 -------DNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC---ERYNGQVC 527
Query: 364 QNKINGY----TCVCAPGYSGKECSININEC-----ESSPCLHGATCIDEVATFSCVCPK 414
G C C PG+ G C C C C C
Sbjct: 528 GGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHS 583
Query: 415 GLTGRLCETN 424
G LC+
Sbjct: 584 GYQLPLCQEC 593
Score = 50.5 bits (120), Expect = 7e-07
Identities = 55/349 (15%), Positives = 87/349 (24%), Gaps = 61/349 (17%)
Query: 19 CQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAPPCLNGAT 78
C NG G+ D + + + I Q
Sbjct: 364 CSNGVTHRNQPRGDCDG--------VQINVPITFQVKVTATECIQEQSFVIRALGFTDIV 415
Query: 79 CRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCS 138
+ L +C C + + C G Y G+ CE
Sbjct: 416 T----VQVLPQCECRCRDQS---RDRSLCHGKGFLECGICRCDTGYIGKNCECQT---QG 465
Query: 139 SNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP----EIRDCT 194
+ +G C C C C V + G+Y E E +
Sbjct: 466 RSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQ 525
Query: 195 SNPCLNDGVCVDEV------YKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGN 248
G+C ++G + T+ CLN C G+C
Sbjct: 526 VCGGPGRGLCFCGKCRCHPGFEGSACQCE----RTTEGCLNPRRVECSGRGRCR-----C 576
Query: 249 YDCTCDALHTGDPC-----------KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGP 297
C C + + C K+ SC + GKNCS G
Sbjct: 577 NVCECHSGYQLPLCQECPGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACPGLQLS 631
Query: 298 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCD 346
+ + G TCK R + C Y + + + + +
Sbjct: 632 NNPVKGRTCKE--------RDSEGCWVAYTLEQQDGMDRYLIYVDESRE 672
Score = 49.3 bits (117), Expect = 2e-06
Identities = 35/202 (17%), Positives = 49/202 (24%), Gaps = 23/202 (11%)
Query: 248 NYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 307
YD C T G C + C E + + + T +
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ 418
Query: 308 PYLVDETQHRFNCTCPSGYHGK---ICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
E + R S HGK C C C G+ G +C+ S
Sbjct: 419 VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 478
Query: 365 NKIN---------GYTCVCAPG------YSGKECSININECE---SSPCLHGATCIDEVA 406
N C+C G+ C + CE C +
Sbjct: 479 NNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF-- 536
Query: 407 TFSCVCPKGLTGRLCETNIDDC 428
C C G G C+
Sbjct: 537 CGKCRCHPGFEGSACQCERTTE 558
Score = 44.3 bits (104), Expect = 6e-05
Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 4/117 (3%)
Query: 312 DETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYT 371
D + ++ C +G + + C + + +
Sbjct: 354 DTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTD 413
Query: 372 CVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
V EC + S C + C C G G+ CE
Sbjct: 414 IVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGR 466
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 64.5 bits (156), Expect = 4e-11
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESS 393
R F G DV L+ P +G P G E E
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK-------LDDEPPNSGGGSPCEAGEEGEGG 196
Query: 394 PCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
CL+G C C C + G G+ C ++
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY 232
Score = 57.2 bits (137), Expect = 7e-09
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 317 RFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC-A 375
R + + P G +E C NG C + C C
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSR 217
Query: 376 PGYSGKECSININECESSPCLHGATCID 403
G+ GK+CS E ++ C D
Sbjct: 218 TGFRGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 48.7 bits (115), Expect = 3e-06
Identities = 39/289 (13%), Positives = 62/289 (21%), Gaps = 48/289 (16%)
Query: 98 EIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYC 157
++ + P + V D G + CLN GVC V C
Sbjct: 158 RVQSSLALPVDSGEVK---LDDEPPNSGGGSPC-EAGEEGEGGVCLNGGVCSVVDDQAVC 213
Query: 158 ELPEIG-----------DCSSNPCLNDGVCVDVYKGRYWELP-----EIRDCTSNPCL-- 199
+ G + + ++ C D+ + + N +
Sbjct: 214 DCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLH 273
Query: 200 ----NDGVCVDEVYKGRYW-------ELPEIRDCTSNPCLND----CVNPCQNGGKCNED 244
D V + + G E N ND V +N +
Sbjct: 274 TGKSADYVNL-ALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTIS 332
Query: 245 ETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPT--YGGKNCSVELTGCVGPDTCLN 302
G T Y P T G S GC+ +
Sbjct: 333 VDGILTTTGYTQEDYTMLGSDDFF-----YVGGSPSTADLPGSPVSNNFMGCL-KEVVYK 386
Query: 303 GGTCKPYLVDETQHRFNCTCPSGYHGKICE--KCFCRPGFAGDHCDVDF 349
+ L + G CE F +
Sbjct: 387 NNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISL 435
Score = 45.6 bits (107), Expect = 3e-05
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 337 RPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC-APGYSGKECSININECESSPC 395
G C+ C + C N C + +G++C C +SG C+ S
Sbjct: 1005 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 43.3 bits (101), Expect = 1e-04
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 2/105 (1%)
Query: 325 GYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS 384
G + + + C+ + +G ++ G
Sbjct: 558 GGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDG-QSKDIRQMAEVQSTAGVKPSCSR 616
Query: 385 ININECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
C S+PC + C D + C C G GR CE
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL 661
Score = 42.9 bits (100), Expect = 2e-04
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC-APGYSGKECSININECE 391
+ G CLSNPC N C++ N Y C C GY G+ C
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLS 662
Query: 392 SSPCLHGATCIDEV 405
+ + V
Sbjct: 663 YDGSMFMKIQLPVV 676
Score = 41.8 bits (97), Expect = 5e-04
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 13/107 (12%)
Query: 323 PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKE 382
+ + + + GF G VD + L + + C +I +
Sbjct: 965 AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQI------------ERG 1012
Query: 383 CSININECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
C C+ C + C+ + FSC C +G LC
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 34.4 bits (78), Expect = 0.076
Identities = 29/227 (12%), Positives = 45/227 (19%), Gaps = 21/227 (9%)
Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCT 252
C SNPC N+G+C D W DC+ L +
Sbjct: 622 CLSNPCKNNGMCRDG------WNRYVC-DCSGTGYLGRSCEREATVLSYDGSMFMKIQLP 674
Query: 253 CDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLV- 311
+ + G +EL T G +
Sbjct: 675 VVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAG 734
Query: 312 ----DETQHRFNCTC-PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNK 366
D H + ++ AGDH ++F +
Sbjct: 735 YNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE------- 787
Query: 367 INGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCP 413
Y + G S+ N
Sbjct: 788 -RRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFR 833
Score = 32.9 bits (74), Expect = 0.23
Identities = 39/238 (16%), Positives = 61/238 (25%), Gaps = 17/238 (7%)
Query: 129 CELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELP 188
C C SNPC N+G+C D + C+ G C + + + ++
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG-YLGRSCEREATVLSYDGSMFMKIQ 672
Query: 189 EIRDCTSNPCLNDGVCVDEVYKGR--YWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDET 246
+ + G + D V N GK E
Sbjct: 673 LPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLF 732
Query: 247 GNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTC 306
Y+ + HT K D + G T L
Sbjct: 733 AGYNLNDNEWHTV----RVVRRGKSLKLTVD--------DQQAMTGQMAGDHTRLE--FH 778
Query: 307 KPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
T+ R+ + PS + G + F + + D D C N F
Sbjct: 779 NIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNII 836
Score = 32.1 bits (72), Expect = 0.46
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 284 GKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKCFCRPGFAG 342
+ C T C D+C N G C + F+C C + + G +C F+
Sbjct: 1010 ERGCEGPSTTC-QEDSCSNQGVCL-----QQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 1063
Query: 343 DHCDVDFDECLSN 355
+ + ++
Sbjct: 1064 GGGQITYKWPPND 1076
Score = 31.4 bits (70), Expect = 0.76
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 222 CTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALH--TGDPCKH-GSCVDKRAGYFCDC 278
C + ++ + + C+ + +PCK+ G C D Y CDC
Sbjct: 585 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Query: 279 PPT-YGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
T Y G++C E T +G + H
Sbjct: 645 SGTGYLGRSCEREATVL-----SYDGSMFMKIQLPVVMHTEAED 683
Score = 31.4 bits (70), Expect = 0.79
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 258 TGDPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELTGC 294
D C + G C+ + G+ CDC T + G C+ T
Sbjct: 1021 QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 31.0 bits (69), Expect = 0.94
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 137 CSSNPCLNDGVCVDVYKGRYCELPEIG 163
C + C N GVC+ + G C+
Sbjct: 1020 CQEDSCSNQGVCLQQWDGFSCDCSMTS 1046
Score = 27.9 bits (61), Expect = 8.6
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCD 38
S+ C Q + C N G C + G + C C
Sbjct: 1017 STTC--QEDSCSNQGVCLQQWDG-FSCDCS 1043
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 59.7 bits (145), Expect = 7e-11
Identities = 33/165 (20%), Positives = 48/165 (29%), Gaps = 22/165 (13%)
Query: 258 TGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
C G+CV+ Y CDCPP + GCV + +P
Sbjct: 8 DPTTCISGNCVNTPGSYICDCPPDFELNPTR---VGCVDTRSGNCYLDIRP---RGDNGD 61
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
C+ G + C + PC C G
Sbjct: 62 TACSNEIGVGV------------SKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG 109
Query: 378 YSGKECSIN---INECESSP-CLHGATCIDEVATFSCVCPKGLTG 418
+ ++ I+EC+ P G CI+ +F C CP G
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 56.2 bits (136), Expect = 9e-10
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 2/97 (2%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY--SGKECSININEC 390
C C P F + V + S C+ + C G S C ++ +
Sbjct: 25 ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84
Query: 391 ESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
+PC C +G ++D
Sbjct: 85 WGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121
Score = 49.7 bits (119), Expect = 2e-07
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVAT 407
D +ECL C N Y C C P + + + S C +
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGD 61
Query: 408 FSCVCPKG--LTGRLCETNIDDCE 429
+C G ++ C ++
Sbjct: 62 TACSNEIGVGVSKASCCCSLGKAW 85
Score = 40.8 bits (96), Expect = 2e-04
Identities = 23/148 (15%), Positives = 34/148 (22%), Gaps = 29/148 (19%)
Query: 247 GNYDCTCDALHTGDPCK-------------HGSCVDKRAGYFCDCPPTYGGKNCSVELTG 293
G+Y C C +P + C G +
Sbjct: 22 GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSK----ASC 77
Query: 294 CVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECL 353
C V+ ++++ C G+ D DEC
Sbjct: 78 CCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPI----------TVIL-EDIDECQ 126
Query: 354 SNP-CFNGATCQNKINGYTCVCAPGYSG 380
P G C N + C C GY
Sbjct: 127 ELPGLCQGGKCINTFGSFQCRCPTGYYL 154
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 61.6 bits (149), Expect = 1e-10
Identities = 43/280 (15%), Positives = 72/280 (25%), Gaps = 59/280 (21%)
Query: 198 CLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDE-TGNYDCTCDAL 256
+G + V + ++ E+ + P + GG T C+A
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQ 192
Query: 257 HTGDPCK--------HGSCVDKRAGYFCDCPPTYGGKNCSVE----------LTGCVGPD 298
G C +G C + C CPP + G+ C C G +
Sbjct: 193 KWGPECNHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQE 250
Query: 299 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE-------------------------- 332
C + C P + C+C +G+ G C
Sbjct: 251 GCKSYVFCLP-------DPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR 303
Query: 333 --KCFCRPGFAGDHCDVDF-DECLSNPCFNGATCQNKINGYTCVC-APGYSGKECSININ 388
C C PG+ G C+ + + + +C A G+
Sbjct: 304 FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTL 363
Query: 389 ECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
LH FS ++ + C
Sbjct: 364 VKPDGTVLHPKDFNHTD-HFSVAIFTIHRILPPDSGVWVC 402
Score = 34.3 bits (78), Expect = 0.069
Identities = 42/332 (12%), Positives = 64/332 (19%), Gaps = 95/332 (28%)
Query: 67 CTTAPPCLNGATCRPQLTEQLYECVCPPGYKEIR-DCTSNPCLNDGVCVWMFDVTIQVYK 125
G +L C + C+N+GVC
Sbjct: 164 AGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCH----------- 212
Query: 126 GRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELP----EIGDCSSNPCLNDGVCVDVYK 181
+ G+C +C + GR CE G C C
Sbjct: 213 ------EDTGEC---------ICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKS--- 254
Query: 182 GRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKC 241
P C +KG C C C NG C
Sbjct: 255 ----------YVFCLPDPYGCSCATG-WKGLQCNEACHPGFYGPDCKLRC--SCNNGEMC 301
Query: 242 NEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCL 301
+ C C P + G C E + P
Sbjct: 302 DRF-----------------------------QGCLCSPGWQGLQCEREGIPRMTPKIVD 332
Query: 302 NGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGA 361
SG IC G+ + + +
Sbjct: 333 LPDH--------------IEVNSGKFNPIC----KASGWPLPTNE-EMTLVKPDGTVLHP 373
Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESS 393
N + ++ + + C +
Sbjct: 374 KDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405
Score = 33.5 bits (76), Expect = 0.13
Identities = 24/156 (15%), Positives = 38/156 (24%), Gaps = 17/156 (10%)
Query: 12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
C+ C N G C+ED +C C G + +H + C+
Sbjct: 198 CNHLCTACMNNGVCHED---TGECICPPGFM----GRTCEKACELHTFGRTCKERCSGQE 250
Query: 72 PCLNGA---------TCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQ 122
C + +C C PG+ C N +C
Sbjct: 251 GCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCS 310
Query: 123 V-YKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYC 157
++G CE I +
Sbjct: 311 PGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNP 346
Score = 30.1 bits (67), Expect = 1.4
Identities = 29/210 (13%), Positives = 37/210 (17%), Gaps = 38/210 (18%)
Query: 3 FKPISLSSPCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPI 62
+K S P + + A L CE
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQK 193
Query: 63 SNQICTTA-PPCLNGATCRPQLTEQLYECVCPPGYKEIR-----------DCTSNPCLND 110
C C+N C EC+CPPG+ C
Sbjct: 194 WGPECNHLCTACMNNGVCHE----DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQ 249
Query: 111 GVCVWMFDVTIQVYK--------GRYCELP------EIGDCSSNPCLNDGVCVDVYK--- 153
C Y G C C N +C
Sbjct: 250 EGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLC 309
Query: 154 -----GRYCELPEIGDCSSNPCLNDGVCVD 178
G CE I +
Sbjct: 310 SPGWQGLQCEREGIPRMTPKIVDLPDHIEV 339
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 58.3 bits (140), Expect = 2e-09
Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 12/143 (8%)
Query: 286 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE------KCFCRPG 339
+ + L + ++ Y + + C H +C C C
Sbjct: 261 DLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHN 320
Query: 340 FAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGA 399
G C P + + G C P S N+ + E C +G
Sbjct: 321 TTGPDCGKCKKNYQGRPW-SPGSYLPIPKGAANACIPSISSIGT--NVCDNELLHCQNGG 377
Query: 400 TCIDEVATFSCVCPKGLTGRLCE 422
TC + C+CP TG LCE
Sbjct: 378 TCHN---NVRCLCPAAYTGILCE 397
Score = 54.1 bits (129), Expect = 4e-08
Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 15/155 (9%)
Query: 189 EIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLN--DCVNPCQNGGKCN--ED 244
++R P + + + ++ + +I+ C + C +
Sbjct: 261 DLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHN 320
Query: 245 ETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGG 304
TG C + G P GS + G C P+ +V C NGG
Sbjct: 321 TTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL---LHCQNGG 377
Query: 305 TCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPG 339
TC + C CP+ Y G +CEK C
Sbjct: 378 TC--------HNNVRCLCPAAYTGILCEKLRCEEA 404
Score = 50.6 bits (120), Expect = 5e-07
Identities = 28/154 (18%), Positives = 41/154 (26%), Gaps = 35/154 (22%)
Query: 266 SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG 325
CV + C+C G +C + G+ P
Sbjct: 305 VCVYDNSKLTCECEHNTTGPDCGKCKKNYQ--GRPWSPGSYLP----------------- 345
Query: 326 YHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSI 385
C P + +V +E C NG TC N C+C Y+G C
Sbjct: 346 --IPKGAANACIPSISSIGTNVCDNEL--LHCQNGGTC---HNNVRCLCPAAYTGILC-- 396
Query: 386 NINECESSPCLHGATCIDEVATFSCVCPKGLTGR 419
E C +C + + P G
Sbjct: 397 -----EKLRCEEAGSCGSD--SGQGAPPHGTHHH 423
Score = 27.9 bits (61), Expect = 7.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 386 NINECESSPC-LHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
+I C LH C+ + + +C C TG C +
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNY 333
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 53.0 bits (128), Expect = 2e-09
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS-ININECESSPCLHGATCIDEV 405
VD DEC C N Y C C GY ++ +EC TC + +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 406 ATFSCVCPKGLTG 418
F C C +G
Sbjct: 63 GGFECTCEEGFEP 75
Score = 39.9 bits (94), Expect = 1e-04
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 333 KCFCRPGFAGDHCD-VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
+C C G+ + VD DEC TC+N I G+ C C G+
Sbjct: 27 RCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEP 75
Score = 29.9 bits (68), Expect = 0.33
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 258 TGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
D CKHG C++ Y C+CP Y CV D C G C
Sbjct: 10 EPDVCKHGQCINTDGSYRCECPFGYILAGNE-----CVDTDECSVGNPCGNGTCKNVIGG 64
Query: 318 FNCTCPSGYHG 328
F CTC G+
Sbjct: 65 FECTCEEGFEP 75
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 56.2 bits (135), Expect = 1e-08
Identities = 47/238 (19%), Positives = 68/238 (28%), Gaps = 37/238 (15%)
Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCT 252
+ + C E K + +D DC CQ + N N + T
Sbjct: 395 VSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGT 454
Query: 253 CDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 312
+ C C G C+C + E + G C G C
Sbjct: 455 FE-------CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG--- 504
Query: 313 ETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECL---SNPCFNGATCQNKING 369
C C S GKI G +C+ D C+ C C
Sbjct: 505 ------QCVCHSSDFGKIT----------GKYCECDDFSCVRYKGEMCSGHGQCSC---- 544
Query: 370 YTCVCAPGYSGKECSININECESSPCLHGATCID--EVATFSCVC-PKGLTGRLCETN 424
C+C ++G C+ ++ +G C + SCVC G G CE
Sbjct: 545 GDCLCDSDWTGYYCNCTTR-TDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKC 601
Score = 42.8 bits (100), Expect = 2e-04
Identities = 35/227 (15%), Positives = 49/227 (21%), Gaps = 29/227 (12%)
Query: 212 RYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKR 271
+LPE + N + + +A G P + +
Sbjct: 358 EVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIK 417
Query: 272 AGYFCDCPPTYGGKNCS--VELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGK 329
F D +C + C NG C C G+ G
Sbjct: 418 PVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGT--------FECGVCRCGPGWLGS 469
Query: 330 ICEKCFCRPGFAGDHCDVDFDECLSNP-CFNGATCQNKINGYTCVCAPGYSGKECS---- 384
CE C + P C C CVC GK
Sbjct: 470 QCE---CSEEDYRPSQQDECSPREGQPVCSQRGECLCG----QCVCHSSDFGKITGKYCE 522
Query: 385 ---ININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
+ + C C C+C TG C
Sbjct: 523 CDDFSCVRYKGEMCSGHGQCSCGD----CLCDSDWTGYYCNCTTRTD 565
Score = 30.8 bits (69), Expect = 0.89
Identities = 51/378 (13%), Positives = 79/378 (20%), Gaps = 125/378 (33%)
Query: 12 CDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTAP 71
+ P + G D + C+ Q +
Sbjct: 401 AKVRGCPQEKEKSFTIKPVGFKDSLIVQVT--------------FDCDCACQAQAEPNSH 446
Query: 72 PCLNGATCRPQLTEQLYECVCPPGYKEIR-DCTSNPCLNDGVCVWMFDVTIQVYKGRYCE 130
C NG + C C PG+ + +C+ V R
Sbjct: 447 RCNNGNGTF-----ECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR--- 498
Query: 131 LPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIG--DCSSNPCLNDGVCVDVYKGRYWELP 188
G+C C+ G+YCE + C G C
Sbjct: 499 ----GECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS----------- 543
Query: 189 EIRDCTSNPCLNDGVCV-DEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETG 247
G C+ D + G Y ++ C++ C GKC
Sbjct: 544 ------------CGDCLCDSDWTGYYCNCT----TRTDTCMSSNGLLCSGRGKCE----- 582
Query: 248 NYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 307
C C P G C PD C C
Sbjct: 583 CGSCVC------------------------IQPGSYGDTCE---KCPTCPDACTFKKEC- 614
Query: 308 PYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKI 367
C G + ++ C C+++I
Sbjct: 615 ------------VECKKFDRGALHDENTC-----------------------NRYCRDEI 639
Query: 368 NGYTCVCAPGYSGKECSI 385
+ G C+
Sbjct: 640 ESVKELKDTGKDAVNCTY 657
Score = 28.9 bits (64), Expect = 3.5
Identities = 42/261 (16%), Positives = 63/261 (24%), Gaps = 31/261 (11%)
Query: 11 PCDAQRNPCQNGGKCNEDETGNYD--CTCDALHT--VC-CVGLANQTLGSIHCETPISNQ 65
C Q N +CN C C C C + C
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQP 493
Query: 66 ICTTAPPCLNGA-TCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVY 124
+C+ CL G C ++ C C G C + +
Sbjct: 494 VCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDW 553
Query: 125 KGRYCELPE----IGDCSSNPCLNDGVCVDV--------YKGRYCELPEIGDCSSNPCLN 172
G YC + C G C G CE + C
Sbjct: 554 TGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKC---PTCPDACTF 610
Query: 173 DGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCV 232
CV+ K L + C + C ++ V E+ + + C
Sbjct: 611 KKECVECKKFDRGALHDENTC-NRYCRDEIESVKEL---------KDTGKDAVNCTYKNE 660
Query: 233 NPCQNGGKCNEDETGNYDCTC 253
+ C + ED +G
Sbjct: 661 DDCVVRFQYYEDSSGKSILYV 681
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 50.0 bits (120), Expect = 1e-07
Identities = 28/164 (17%), Positives = 44/164 (26%), Gaps = 35/164 (21%)
Query: 258 TGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 317
PC +G C + + C+C + TC
Sbjct: 8 ESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI-KGTCWQTVID----------- 55
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
C C +PC +C G
Sbjct: 56 GRCEINING------------ATLKSQCCSSLGAAWGSPCTLC--------QVDPICGKG 95
Query: 378 YSGKECS--ININECESSPCL-HGATCIDEVATFSCVCPKGLTG 418
YS + + +I+ECE P + C++ +F C CP G+T
Sbjct: 96 YSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 47.3 bits (113), Expect = 8e-07
Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 20/149 (13%)
Query: 233 NPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELT 292
+PC NG N G++ C C + T DP K C++ C T C + +
Sbjct: 10 SPCINGVCKNSP--GSFICECSSESTLDPTKT-ICIETIK---GTCWQTVIDGRCEININ 63
Query: 293 GCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDEC 352
G C + + T + + C GY +C D DEC
Sbjct: 64 GATLKSQCCSSLGA-AWGSPCTLCQVDPICGKGYSRIKGTQC------------EDIDEC 110
Query: 353 LSNPCF-NGATCQNKINGYTCVCAPGYSG 380
P C N + C C G +
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 47.3 bits (113), Expect = 9e-07
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVAT 407
D DEC S+PC NG C+N + C C+ + E C
Sbjct: 3 DIDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID----GR 57
Query: 408 FSCVCPKGLTGRLCETNIDDCE 429
C +++
Sbjct: 58 CEININGATLKSQCCSSLGAAW 79
Score = 38.9 bits (91), Expect = 7e-04
Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 14/99 (14%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECES 392
C C D E + C+ +C ++
Sbjct: 25 ICECSSESTLDPTKTICIETIKGTCWQTVIDGR----CEININGATLKSQCCSSLGAAWG 80
Query: 393 SPCLHGATCIDEVATFSCVCPKGLTGRLCET--NIDDCE 429
SPC +C KG + +ID+CE
Sbjct: 81 SPCTLC--------QVDPICGKGYSRIKGTQCEDIDECE 111
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 51.2 bits (122), Expect = 3e-07
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 337 RPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA-PGYSGKECSININECESSPC 395
G C+ C + C N C + +G++C C+ +SG C+ S
Sbjct: 173 CNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 232
Query: 396 LHGATC 401
T
Sbjct: 233 GGQITY 238
Score = 44.2 bits (104), Expect = 5e-05
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 323 PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKE 382
+ + + + GF G CL++ NG + G +
Sbjct: 133 AKETYKSLPKLVHAKEGFQG---------CLASVDLNGRLPDLISDALF---CNGQIERG 180
Query: 383 CSININECESSPCLHGATCIDEVATFSCVCPK-GLTGRLCETNIDDC 428
C C+ C + C+ + FSC C +G LC
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 227
Score = 36.1 bits (83), Expect = 0.017
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 258 TGDPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELTGC 294
D C + G C+ + G+ CDC T + G C+ T
Sbjct: 189 QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 227
Score = 35.4 bits (81), Expect = 0.033
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 286 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKCFCRPGFAGDH 344
C T C D+C N G C + F+C C + + G +C F+
Sbjct: 180 GCEGPSTTC-QEDSCSNQGVCL-----QQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
Query: 345 CDVDFDECLSN 355
+ + ++
Sbjct: 234 GQITYKWPPND 244
Score = 33.1 bits (75), Expect = 0.16
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 137 CSSNPCLNDGVCVDVYKGRYCELPEIG 163
C + C N GVC+ + G C+
Sbjct: 188 CQEDSCSNQGVCLQQWDGFSCDCSMTS 214
Score = 31.1 bits (70), Expect = 0.76
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 9 SSPCDAQRNPCQNGGKCNEDETGNYDCTCD 38
S+ C Q + C N G C + G + C C
Sbjct: 185 STTC--QEDSCSNQGVCLQQWDG-FSCDCS 211
Score = 29.6 bits (66), Expect = 2.0
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 102 CTSNPCLNDGVCVWMF-----DVTIQVYKGRYCELPEIGDCSSNPC 142
C + C N GVC+ + D ++ + G C P S
Sbjct: 188 CQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
Score = 29.2 bits (65), Expect = 2.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 165 CSSNPCLNDGVCVDVYKG 182
C + C N GVC+ + G
Sbjct: 188 CQEDSCSNQGVCLQQWDG 205
Score = 28.0 bits (62), Expect = 7.1
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 16/74 (21%)
Query: 193 CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCT 252
C + C N GVC+ + C DC +G CN+ T
Sbjct: 188 CQEDSCSNQGVCLQQW--------------DGFSC--DCSMTSFSGPLCNDPGTTYIFSK 231
Query: 253 CDALHTGDPCKHGS 266
T +
Sbjct: 232 GGGQITYKWPPNDR 245
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 46.4 bits (110), Expect = 2e-06
Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 23/129 (17%)
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLS---NPCFNGATCQNKINGYTCVC 374
C C G+ + C D +EC + C + C N Y CVC
Sbjct: 19 TACRCNPGFSSFSE-----IITTPMETC-DDINECATLSKVSCGKFSDCWNTEGSYDCVC 72
Query: 375 APGYSGKECSIN-----------INECES--SPCLHGATCIDEVATFSCVCPKGLTGRLC 421
+PGY + ++EC S C C + V ++SC C G R
Sbjct: 73 SPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHG 132
Query: 422 E-TNIDDCE 429
N D
Sbjct: 133 IPNNQKDTV 141
Score = 43.3 bits (102), Expect = 2e-05
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 273 GYFCDCPPTYGGKNCSVELTG--CVGPDTCLNGGTCKPYLVDE---TQHRFNCTCPSGYH 327
C C P + + + C + C + T+ ++C C GY
Sbjct: 18 ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYE 77
Query: 328 GKICEKCFCRPGFAGDHCDVDFDECLSNP--CFNGATCQNKINGYTCVCAPGYSGKECS- 384
K F + C D DEC S C + C N + Y+C C PG+ +
Sbjct: 78 PVSGAKTFKNES--ENTC-QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIP 134
Query: 385 --ININECE 391
CE
Sbjct: 135 NNQKDTVCE 143
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 42.7 bits (101), Expect = 9e-06
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 348 DFDECLSNPCFNG-ATCQNKINGYTCVCAPGYSGKECS----ININECESSPCL-HGATC 401
D DEC +P G C N + C C GY ++I+EC+ P L G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 402 IDEVATFSCVCPKG 415
+ ++ C CP G
Sbjct: 62 HNTEGSYRCECPPG 75
Score = 36.5 bits (85), Expect = 0.002
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCF-NGATCQNKINGYTCVCAP 376
F C C GY C +D DEC +P G C N Y C C P
Sbjct: 25 FECKCDEGYESGFMMMKNC----------MDIDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 377 GY 378
G+
Sbjct: 75 GH 76
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 45.0 bits (105), Expect = 1e-05
Identities = 27/180 (15%), Positives = 41/180 (22%), Gaps = 21/180 (11%)
Query: 250 DCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSV-----ELTGCVGPDTCLNGG 304
+ A+ C +G V + C C + + E C G
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 305 TCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQ 364
C + + C C GY DV
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCV----------LDVCQYXNCGESGECIVEYL 110
Query: 365 NKINGYTCVCAPGYSGKECS------ININECESSPCLHGATCIDEVATFSCVCPKGLTG 418
++I C CA G C+ C + + C C +G T
Sbjct: 111 SEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/160 (14%), Positives = 37/160 (23%), Gaps = 15/160 (9%)
Query: 236 QNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCV 295
+ C E + A C + Y C C Y + L C
Sbjct: 36 LSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95
Query: 296 GPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSN 355
+ +G C+C G ++ C C
Sbjct: 96 YXNCGESGEC--IVEYLSEIQSAGCSCAIGXVPNPEDEXXC--------TXTGETACQLX 145
Query: 356 PCFNGATCQNKINGYTCVCAPGYSG----KECSININECE 391
+ C N Y C C G++ C + +
Sbjct: 146 CNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC-LGPHHHH 184
Score = 32.7 bits (73), Expect = 0.13
Identities = 23/133 (17%), Positives = 36/133 (27%), Gaps = 12/133 (9%)
Query: 294 CVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECL 353
V DT G + F C C G C + C
Sbjct: 6 AVTVDTICXNGQLVQ-----MSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXA---CG 57
Query: 354 SNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGA----TCIDEVATFS 409
++N Y C C GY+ E + ++ C+ C + E+ +
Sbjct: 58 EFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAG 117
Query: 410 CVCPKGLTGRLCE 422
C C G +
Sbjct: 118 CSCAIGXVPNPED 130
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/95 (12%), Positives = 23/95 (24%), Gaps = 11/95 (11%)
Query: 346 DVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININ-----------ECESSP 394
+ + + N + C+C G + C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 395 CLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
+V + C C +G T +D C+
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 44.1 bits (103), Expect = 2e-05
Identities = 21/114 (18%), Positives = 26/114 (22%), Gaps = 9/114 (7%)
Query: 225 NPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGG 284
+ VN G + C G + + T
Sbjct: 81 GIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNT-ILXTPQN 139
Query: 285 KNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
P C NGG C R C CP G+HG CE
Sbjct: 140 AIFFKTCQQAECPGGCRNGGFCNE--------RRICECPDGFHGPHCEGTKHHH 185
Score = 30.3 bits (67), Expect = 0.85
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 357 CFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGL 416
F G T + P + + EC C +G C C CP G
Sbjct: 118 AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAEC-PGGCRNGGFC---NERRICECPDGF 173
Query: 417 TGRLCET 423
G CE
Sbjct: 174 HGPHCEG 180
Score = 28.3 bits (62), Expect = 3.4
Identities = 16/82 (19%), Positives = 21/82 (25%), Gaps = 4/82 (4%)
Query: 186 ELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDE 245
P + V V P+ +C C+NGG CNE
Sbjct: 106 GFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERR 165
Query: 246 TGNYDCTCDALHTGDPCKHGSC 267
C C G C+
Sbjct: 166 I----CECPDGFHGPHCEGTKH 183
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 40.8 bits (96), Expect = 7e-05
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY---SGKECSININEC 390
+ +ECL N C + GY C+C G+ + + C +I+EC
Sbjct: 15 IPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRC-EDIDEC 72
Query: 391 ES-SPCLHGATCIDEVATFSCVCPKG 415
+ C C++ + C C +G
Sbjct: 73 QDPDTCSQ--LCVNLEGGYKCQCEEG 96
Score = 36.5 bits (85), Expect = 0.003
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 359 NGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKG 415
+ ++ Y + + NEC + C D + C+CP G
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGA-MGTNECLDNNGGCSYVCNDLKIGYECLCPDG 57
Score = 33.8 bits (78), Expect = 0.020
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 20/116 (17%)
Query: 263 KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTC 322
KH + Y + G +G + CL+ Y+ ++ + + C C
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQ-------GAMGTNECLDNNGGCSYVCNDLKIGYECLC 54
Query: 323 PSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGY 378
P G+ +C D DEC +P C N GY C C G+
Sbjct: 55 PDGFQLVAQRRC------------EDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 97
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 39.9 bits (94), Expect = 8e-05
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 348 DFDECLSNP--CFNGATCQNKINGYTCVCAPGYS----GKECSININECESSPCLHGATC 401
D DEC P C C+N + C C GY K C +I+EC + C C
Sbjct: 2 DVDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCAQ--LC 57
Query: 402 IDEVATFSCVC 412
++ ++C C
Sbjct: 58 VNYPGGYTCYC 68
Score = 30.3 bits (69), Expect = 0.23
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVC--A 375
F C CP GY R C D DEC N C C N GYTC C
Sbjct: 25 FECECPEGY----------RYNLKSKSC-EDIDECSENMC--AQLCVNYPGGYTCYCDGK 71
Query: 376 PGY 378
G+
Sbjct: 72 KGF 74
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 42.8 bits (100), Expect = 2e-04
Identities = 18/72 (25%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGY----SGKECSININECESSPCLHGATCID 403
+ C N CQ C C GY G+ C E C G C +
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTN 59
Query: 404 EVATFSCVCPKG 415
F C C G
Sbjct: 60 SEGAFQCWCEAG 71
Score = 30.9 bits (69), Expect = 0.71
Identities = 17/121 (14%), Positives = 28/121 (23%), Gaps = 10/121 (8%)
Query: 260 DPCKHGS------CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 313
+ C + C R C C Y C + C G C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDG---RTCQDVNECAEEGYC-SQGCTN 59
Query: 314 TQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCV 373
++ F C C +GY + + G + + N +
Sbjct: 60 SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAI 119
Query: 374 C 374
Sbjct: 120 A 120
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 40.0 bits (94), Expect = 2e-04
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 333 KCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYS---GKECSININE 389
C C GFA + + N A C +C C GY G C +I+E
Sbjct: 25 LCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFIC-TDIDE 82
Query: 390 CESSPCLHGATCIDEVATFSCVCPKG 415
CE+ G C + TF C+C
Sbjct: 83 CENGGFCSG-VCHNLPGTFECICGPD 107
Score = 36.2 bits (84), Expect = 0.004
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 348 DFDECLSNPCFNGATCQNKING-YTCVCAPGYSGKECSININECESSPCLHGATCIDEVA 406
D C C CQ Y CVCA G++ + + + A C D
Sbjct: 3 PVDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNT 59
Query: 407 TFSCVCPKG 415
SC CP+G
Sbjct: 60 QASCECPEG 68
Score = 32.7 bits (75), Expect = 0.058
Identities = 24/123 (19%), Positives = 32/123 (26%), Gaps = 30/123 (24%)
Query: 261 PCKHGSCVDKRAGYFCDCPPTY-----GGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 315
C++ + Y C C + C + P C
Sbjct: 11 NCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ---------- 60
Query: 316 HRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCA 375
+C CP GY C D DEC N F C N + C+C
Sbjct: 61 --ASCECPEGYILDDGFIC------------TDIDEC-ENGGFCSGVCHNLPGTFECICG 105
Query: 376 PGY 378
P
Sbjct: 106 PDS 108
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 41.5 bits (97), Expect = 4e-04
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 348 DFDECLSNPCFNGATCQNKING-YTC-VCAPGYSGK--------ECSININECESSPCLH 397
D D CLSNPCF GA C + +G ++C C G+ G EC++ + C
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICF--STSK 59
Query: 398 GATCIDEVATFSC-VCPKGLTG 418
C++ F C CP G
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRG 81
Score = 37.3 bits (86), Expect = 0.010
Identities = 38/220 (17%), Positives = 57/220 (25%), Gaps = 25/220 (11%)
Query: 233 NPCQNGGKCNEDETGNYDCT-CDALHTGD-------------------PCKHGSCVDKRA 272
NPC G +C+ G++ C C G+ K CV+ +
Sbjct: 9 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQP 68
Query: 273 GYFCD-CPPTYGG--KNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGK 329
G+ C CPP Y G C C C G+
Sbjct: 69 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPC-KDKTHNCHKHAEC-IYLGHFSD 126
Query: 330 ICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININE 389
KC C+ G+AGD D L C + + + ++
Sbjct: 127 PMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDK 186
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
D V C R + + D+
Sbjct: 187 DGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226
Score = 31.1 bits (70), Expect = 0.81
Identities = 27/201 (13%), Positives = 44/201 (21%), Gaps = 21/201 (10%)
Query: 229 NDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCS 288
CQ G + C D+ G P + C + + +
Sbjct: 127 PMYKCECQTGYAGD-----GLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQ 181
Query: 289 VELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVD 348
+ D C + ++ + + GD CD
Sbjct: 182 EDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN---------PRQADYDKDEVGDRCDNC 232
Query: 349 FDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSP-CLHGATCIDEVAT 407
N A NG C+ G + + C T D V
Sbjct: 233 PY------VHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGD 286
Query: 408 FSCVCPKGLTGRLCETNIDDC 428
CP + + D
Sbjct: 287 HCDNCPLVHNPDQTDVDNDLV 307
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 41.0 bits (95), Expect = 6e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 350 DECLSNPCFNGATCQNKINGYTCVCAPGY--SGKECSININECESSPCLHGATCIDEVAT 407
+ECL N C + GY C+C G+ + +I+EC+ P C++
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 59
Query: 408 FSCVCP 413
+ C C
Sbjct: 60 YKCQCE 65
Score = 30.2 bits (67), Expect = 1.3
Identities = 18/102 (17%), Positives = 24/102 (23%), Gaps = 6/102 (5%)
Query: 333 KCFCRPGF--AGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG---YSGKECSINI 387
+C C GF D DEC +P C N GY C C G + +
Sbjct: 22 ECLCPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 80
Query: 388 NECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
+ S R +
Sbjct: 81 GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 122
Score = 29.0 bits (64), Expect = 2.8
Identities = 22/145 (15%), Positives = 34/145 (23%), Gaps = 8/145 (5%)
Query: 233 NPCQNG-GKCNE---DETGNYDCTCDA---LHTGDPCKHGSCVDKRAGYFCDCPPTYGGK 285
N C + G C+ D Y+C C L C+ C GG
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 286 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHC 345
C E + P T + T R A
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA-LDT 119
Query: 346 DVDFDECLSNPCFNGATCQNKINGY 370
+V + + C +++
Sbjct: 120 EVASNRIYWSDLSQRMICSTQLDRA 144
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 372 CVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
C C+PG+ G C CE C HG C V C+C KG G CE
Sbjct: 410 CCCSPGWEGDFCRTAK--CE-PACRHGGVC---VRPNKCLCKKGYLGPQCE 454
Score = 39.2 bits (91), Expect = 0.002
Identities = 22/106 (20%), Positives = 28/106 (26%), Gaps = 29/106 (27%)
Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
P + C NG C P C C G+ G C C P
Sbjct: 378 PEECRATVQPAQTLTSECSRLCRNG-YCTPTG--------KCCCSPGWEGDFCRTAKCEP 428
Query: 339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECS 384
C +G C + C+C GY G +C
Sbjct: 429 -----------------ACRHGGVC---VRPNKCLCKKGYLGPQCE 454
Score = 33.0 bits (75), Expect = 0.19
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 262 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTC-KPYLVDETQHRFNC 320
C++G C C C P + G C C +GG C +P C
Sbjct: 399 CRNGYCTPTGK---CCCSPGWEGDFCRT----AKCEPACRHGGVCVRPN---------KC 442
Query: 321 TCPSGYHGKICEK 333
C GY G CE+
Sbjct: 443 LCKKGYLGPQCEQ 455
Score = 28.0 bits (62), Expect = 6.5
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 11 PCDAQRNPCQNGGKCNEDETGNYDCTCDALHTVCCVGLANQTLGSIHCETPISNQICTTA 70
P + +T +C+ + C G C C TA
Sbjct: 371 DPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTP------TGKCCCSPGWEGDFCRTA 424
Query: 71 ---PPCLNGATC-RPQLTEQLYECVCPPGY 96
P C +G C RP +C+C GY
Sbjct: 425 KCEPACRHGGVCVRPN------KCLCKKGY 448
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 349 FDECLSNPCFNGATCQNKINGYTCVCAPGYSGKEC 383
C + C C IN YTC C PG+SG +C
Sbjct: 119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 31.7 bits (72), Expect = 0.20
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
C ++ C C++ + ++C C G +G CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 29.0 bits (65), Expect = 1.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 295 VGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 333
+C G C ET + + C C G+ G CE+
Sbjct: 122 CTNTSCSGHGECV-----ETINNYTCKCDPGFSGLKCEQ 155
Score = 29.0 bits (65), Expect = 1.8
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 251 CTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNC 287
C A HG CV+ Y C C P + G C
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
Score = 27.0 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 230 DCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKH 264
C G+C E NY C CD +G C+
Sbjct: 122 CTNTSCSGHGECVET-INNYTCKCDPGFSGLKCEQ 155
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 37.9 bits (88), Expect = 0.002
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 352 CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECE 391
C C C I YTC C PG+ G EC ++ +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 35.9 bits (83), Expect = 0.008
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDCE 429
C+ C C++ + ++C C G G CE DD +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 29.0 bits (65), Expect = 2.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCF 335
+C G C ET + C+C G++G CE
Sbjct: 124 DMSCSKQGECL-----ETIGNYTCSCYPGFYGPECEYVR 157
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 39.2 bits (91), Expect = 0.002
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 225 NPCLNDCVNPCQNGGKCNEDETGNYDCTCDAL-HTGDPCKHGS 266
NPC C PCQ+ G C Y C C ++G C
Sbjct: 3 NPC---CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 31.5 bits (71), Expect = 0.59
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 350 DECLSNPCFNGATCQNK-INGYTCVCAP-GYSGKECSI 385
+ C PC + C ++ Y C C GYSG C+I
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 31.5 bits (71), Expect = 0.62
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 165 CSSNPCLNDGVCVDVYKGRYWELPEIRDCT 194
C PC + G+CV RY DCT
Sbjct: 5 CCYYPCQHQGICVRFGLDRYQ-----CDCT 29
Score = 31.5 bits (71), Expect = 0.63
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 17 NPCQNGGKCNEDETGNYDCTC 37
PCQ+ G C Y C C
Sbjct: 8 YPCQHQGICVRFGLDRYQCDC 28
Score = 30.4 bits (68), Expect = 1.1
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 102 CTSNPCLNDGVCV------WMFDVTIQVYKGRYCELPE 133
C PC + G+CV + D T Y G C +PE
Sbjct: 5 CCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 30.4 bits (68), Expect = 1.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 137 CSSNPCLNDGVCVDVYKGRY 156
C PC + G+CV RY
Sbjct: 5 CCYYPCQHQGICVRFGLDRY 24
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 38.2 bits (88), Expect = 0.005
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 224 SNPCLNDCVNPCQNGGKCNEDETGNYDCTC 253
+NPC C NPCQN G+C Y C C
Sbjct: 1 ANPC---CSNPCQNRGECMSTGFDQYKCDC 27
Score = 32.8 bits (74), Expect = 0.25
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 350 DECLSNPCFNGATCQNK-INGYTCVCAP-GYSGKECSI 385
+ C SNPC N C + + Y C C G+ G+ C+
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 30.9 bits (69), Expect = 0.97
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 165 CSSNPCLNDGVCVDVYKGRYWELPEIRDCT 194
C SNPC N G C+ +Y DCT
Sbjct: 4 CCSNPCQNRGECMSTGFDQYK-----CDCT 28
Score = 30.9 bits (69), Expect = 0.99
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 17 NPCQNGGKCNEDETGNYDCTC 37
NPCQN G+C Y C C
Sbjct: 7 NPCQNRGECMSTGFDQYKCDC 27
Score = 30.5 bits (68), Expect = 1.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 102 CTSNPCLNDGVCV------WMFDVTIQVYKGRYCELPEIGD 136
C SNPC N G C+ + D T + G C PE
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLT 44
Score = 29.7 bits (66), Expect = 1.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 137 CSSNPCLNDGVCVDVYKGRY 156
C SNPC N G C+ +Y
Sbjct: 4 CCSNPCQNRGECMSTGFDQY 23
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 37.5 bits (87), Expect = 0.008
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 3/85 (3%)
Query: 347 VDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKE---CSININECESSPCLHGATCID 403
+ + N C N + + Y + + C + E +
Sbjct: 54 NSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAI 113
Query: 404 EVATFSCVCPKGLTGRLCETNIDDC 428
E AT + + DC
Sbjct: 114 EGATATSEYQTFFNPATFGSGEADC 138
Score = 36.0 bits (83), Expect = 0.020
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 6/136 (4%)
Query: 166 SSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSN 225
PCL ++ + N C N + V+ + + C N
Sbjct: 32 HGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLN 91
Query: 226 PCLNDCVNPCQNG-GKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGG 284
C +G + ++ T + +P GS C P +
Sbjct: 92 YCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGS-----GEADCGLRPLFEK 146
Query: 285 KNCSVELTGCVGPDTC 300
K+ + +
Sbjct: 147 KSLEDKTERELLESYI 162
Score = 32.9 bits (75), Expect = 0.20
Identities = 15/158 (9%), Positives = 29/158 (18%), Gaps = 21/158 (13%)
Query: 138 SSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVD------VYKGRYWELPEIR 191
PCL ++ + N C N + K + ++
Sbjct: 32 HGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLN 91
Query: 192 DCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDC 251
C G +DE + N E
Sbjct: 92 YCEEAVEEETGDGLDE----------DSDRAIEGATATSEYQTFFNPATFGSGE-----A 136
Query: 252 TCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSV 289
C + ++ G + +
Sbjct: 137 DCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEI 174
Score = 28.7 bits (64), Expect = 3.7
Identities = 12/104 (11%), Positives = 17/104 (16%), Gaps = 3/104 (2%)
Query: 74 LNGATCRPQLTEQLYECVCPPGYKEIRDCTSNPCLNDGVC---VWMFDVTIQVYKGRYCE 130
+G C + Q + N C N VW + G
Sbjct: 31 THGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDL 90
Query: 131 LPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDG 174
D E + G
Sbjct: 91 NYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSG 134
Score = 28.7 bits (64), Expect = 4.0
Identities = 22/182 (12%), Positives = 30/182 (16%), Gaps = 33/182 (18%)
Query: 239 GKCNEDETGNYDCTCDALHTGDPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGP 297
+C D Y G PC S K D C P
Sbjct: 13 EQCVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSKHQDFNSAVQLVE-----NFCRNP 67
Query: 298 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPC 357
D G C + P + C + DE
Sbjct: 68 DGDEEGVWC-----------YVAGKPGDFGYCDLNYCEEAVE---EETGDGLDED----- 108
Query: 358 FNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLT 417
I G T + + C + +
Sbjct: 109 -----SDRAIEGATATSEYQTFFNPATFG---SGEADCGLRPLFEKKSLEDKTERELLES 160
Query: 418 GR 419
Sbjct: 161 YI 162
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 36.6 bits (84), Expect = 0.009
Identities = 27/204 (13%), Positives = 46/204 (22%), Gaps = 37/204 (18%)
Query: 234 PCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCS----- 288
P Q GG + ++ + D G + Y + P + +
Sbjct: 83 PWQPGGVWVLGARDKQNIVAVSIKSND---GGKTLTGTTTYNGEGPIGFKSEVTDGDTYS 139
Query: 289 --VELTGCVGPDTCLNGGTCK-PYLVDETQHRFNCTCPSG---YHGKICEKCFCRPGFAG 342
+ G P +GG + + G G + GF G
Sbjct: 140 VENQWGGSAAP--WHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRG 197
Query: 343 DHCDVDFDE------CLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCL 396
D + P G V A + +
Sbjct: 198 TLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSD-------------- 243
Query: 397 HGATCIDEVATFSCVCPKGLTGRL 420
G + ++ P G RL
Sbjct: 244 -GGKTLAGTMIYNGEGPIGFRARL 266
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 36.4 bits (84), Expect = 0.017
Identities = 3/46 (6%), Positives = 11/46 (23%)
Query: 345 CDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININEC 390
+ + +G + Q+ + C + +
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD 307
Score = 33.3 bits (76), Expect = 0.19
Identities = 4/39 (10%), Positives = 8/39 (20%)
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
+ S L G + + C +
Sbjct: 269 IKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD 307
Score = 31.4 bits (71), Expect = 0.59
Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 10/115 (8%)
Query: 321 TCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
T SG +K GF+ C + ++ + V A +
Sbjct: 259 TSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGE--ELDIVAAKSHEA 316
Query: 381 KE--------CSININECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDD 427
+ C + C G + + K L GR +
Sbjct: 317 CQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTL 371
Score = 30.6 bits (69), Expect = 1.1
Identities = 21/183 (11%), Positives = 36/183 (19%), Gaps = 32/183 (17%)
Query: 66 ICTTAPPCLNGATCRPQLTEQLYECVCP----PGYKEIRDCTSNPCLNDGVCVWMFDVTI 121
ICT P CL + ++ +C + L+
Sbjct: 229 ICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQ------- 281
Query: 122 QVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYK 181
C + + C + L E D + C +
Sbjct: 282 --------------SCRHSIPV---FCHSSFYHDTDFLGEELDIVAAKSH--EACQKLCT 322
Query: 182 GRYWELPEIRDCTSNPCLNDG--VCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGG 239
C + G ++ R S L C +
Sbjct: 323 NAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTT 382
Query: 240 KCN 242
K
Sbjct: 383 KIK 385
Score = 29.4 bits (66), Expect = 2.3
Identities = 12/123 (9%), Positives = 25/123 (20%), Gaps = 13/123 (10%)
Query: 258 TGDPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH 316
G S R C ++ + + C+ + +
Sbjct: 270 KKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSH--EACQKLCTNAVRC 327
Query: 317 RFNCTCPSGYH---------GKICEKCFCRPGFAGDHCDVDFDECLSNP-CFNGATCQNK 366
+F P+ K+ G + L + +
Sbjct: 328 QFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPR 387
Query: 367 ING 369
I G
Sbjct: 388 IVG 390
Score = 28.3 bits (63), Expect = 6.5
Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 15/127 (11%)
Query: 66 ICTTAPPCLNGATCRPQLTEQLYECVCPPG-YKEIRDCTSNPCLNDG----VCVWMFDVT 120
L+G + + C Y + + C +
Sbjct: 267 TRIKKSKALSGFSLQSCRHS--IPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNA 324
Query: 121 IQVYKGRYCELPEIGDCSSNPCLN----DGVCVDVYKGRYCELPEIGDCSSNPCLNDGVC 176
++ Y + C +G + GR I + C D C
Sbjct: 325 VRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGG----ISGYTLRLCKMDNEC 380
Query: 177 VDVYKGR 183
K R
Sbjct: 381 TTKIKPR 387
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 32.5 bits (74), Expect = 0.019
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 351 ECLSNPCFNGATCQN--KINGYTCVCAPGYSGKEC 383
C NG C + ++ YTC C GYSG C
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
Score = 31.3 bits (71), Expect = 0.048
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 388 NECESSPCLHGATC--IDEVATFSCVCPKGLTGRLCET 423
CL+G C I+ + +++C C G +G C+T
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 30.9 bits (70), Expect = 0.080
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
CLNGG C E+ + C C GY G C+
Sbjct: 14 CLNGGVCMH---IESLDSYTCNCVIGYSGDRCQ 43
Score = 29.4 bits (66), Expect = 0.22
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 72 PCLNGATCRPQLTEQLYECVCPPGY 96
CLNG C + Y C C GY
Sbjct: 13 YCLNGGVCMHIESLDSYTCNCVIGY 37
Score = 27.1 bits (60), Expect = 1.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 225 NPCLNDCVNPCQNGGKC-NEDETGNYDCTCDALHTGDPCKH 264
C + C NGG C + + +Y C C ++GD C+
Sbjct: 4 PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 34.8 bits (80), Expect = 0.019
Identities = 16/66 (24%), Positives = 19/66 (28%), Gaps = 19/66 (28%)
Query: 318 FNCTCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPG 377
C +C C+P C C IN YTC C G
Sbjct: 107 DACHKLKAA---LCYTASCQP----------------WSCSGHGECVEIINNYTCNCDVG 147
Query: 378 YSGKEC 383
Y G +C
Sbjct: 148 YYGPQC 153
Score = 29.8 bits (67), Expect = 1.2
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 297 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
P +C G C E + + C C GY+G C+ P
Sbjct: 124 PWSCSGHGECV-----EIINNYTCNCDVGYYGPQCQFVQVDP 160
Score = 27.9 bits (62), Expect = 4.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 390 CESSPCLHGATCIDEVATFSCVCPKGLTGRLCE 422
C+ C C++ + ++C C G G C+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 30.9 bits (69), Expect = 0.086
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
C+NGG C R+ C C G+ G C
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 28.6 bits (63), Expect = 0.70
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 388 NECESSPCLHGATC-----IDEVATFSCVCPKGLTGRLCETNI 425
E E + C++G C + + + C C G TG C N+
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 27.0 bits (59), Expect = 2.7
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 350 DECLSNPCFNGATC-----QNKINGYTCVCAPGYSGKEC 383
E C NG C + + Y C C PG++G C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 30.3 bits (68), Expect = 0.13
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
CLN C + ++C C G+ G+ CE
Sbjct: 16 CLNDAHCF-AVKIADLPVYSCECAIGFMGQRCE 47
Score = 27.6 bits (61), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 350 DECLSNPCFNGATC----QNKINGYTCVCAPGYSGKEC 383
+ + C N A C + Y+C CA G+ G+ C
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
Score = 25.7 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 391 ESSPCLHGATC----IDEVATFSCVCPKGLTGRLCET 423
++ CL+ A C I ++ +SC C G G+ CE
Sbjct: 12 DAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 25.3 bits (55), Expect = 9.8
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 72 PCLNGATCR--PQLTEQLYECVCPPGY 96
CLN A C +Y C C G+
Sbjct: 15 YCLNDAHCFAVKIADLPVYSCECAIGF 41
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 32.8 bits (74), Expect = 0.16
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 350 DECLSN--PCFNGATCQNKINGYTCVCAPGYS--GKECSININECESSPCLHG 398
C +N C A C++ G+ C C Y+ G++C + + + G
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKG 58
Score = 27.4 bits (60), Expect = 9.3
Identities = 13/65 (20%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 264 HGSCVDKRAGYFCDCPPTYGGKN--CSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 321
H C D G+ C C Y G C E + + F T
Sbjct: 18 HAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSS---QVPVVFENT 74
Query: 322 CPSGY 326
Y
Sbjct: 75 DLHSY 79
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 32.2 bits (73), Expect = 0.16
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 338 PGFAGDHCDVDFDECLSNPCFNG---ATCQNKINGYTCVCAPGYSGKECSININE 389
GF + D DEC P C N + G+ C C GY +E
Sbjct: 113 TGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.20
Identities = 25/229 (10%), Positives = 51/229 (22%), Gaps = 61/229 (26%)
Query: 32 NYDCTCDALHTVCCVGLANQTLGSIHCETPIS--NQICTTAPPCLNGATCRPQLTEQLYE 89
NY + T Q S+ I +++ R Q +L +
Sbjct: 90 NYKFLMSPIKTEQ-----RQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 90 CVC---PPGY----------KEI------RDCTSNPCLNDGVCVWMFDVTIQVYKGRYCE 130
+ P K ++ + W+ +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWL---NL----KNCNS 194
Query: 131 LPEIGDCSSNPCLNDGVCVDVYKGRYCELPEIGDCSSNPCLNDGVCVDVYKGRYWELPEI 190
+ + + D SSN L + R +
Sbjct: 195 PETVLEMLQKLLYQ-------IDPNWTSRS---DHSSNIKLRIHS-IQAELRRLLKSKPY 243
Query: 191 RDCTSNPCLNDGVCVDEVYKGRYWELPEIRDC-----TSNPCLNDCVNP 234
+ CL + + V + W + C T + D ++
Sbjct: 244 EN-----CL---LVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSA 283
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 29.8 bits (67), Expect = 0.21
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 388 NECESSPCLHGATC--IDEVATFSCVCPKGLTGRLCE 422
CLH C I+ + ++C C G G C+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 29.4 bits (66), Expect = 0.22
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 350 DECLSNPCFNGATCQ--NKINGYTCVCAPGYSGKEC 383
C + C ++ Y C C GY G+ C
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
Score = 29.4 bits (66), Expect = 0.23
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
CL+ G C Y+ + + C C GY G+ C+
Sbjct: 14 CLHDGVCM-YIEALDK--YACNCVVGYIGERCQ 43
Score = 27.1 bits (60), Expect = 1.8
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 73 CLNGATCRPQLTEQLYECVCPPGYKEIR 100
CL+ C Y C C GY R
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGER 41
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 32.7 bits (74), Expect = 0.25
Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 32/186 (17%)
Query: 269 DKRAGYFCDCPPTYGGKNCSVELTGCVGP--DTCLNGGTCKPYLVDETQHRFNCTC---P 323
+ G +C G+NC + C+P D C
Sbjct: 339 NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYT 398
Query: 324 SGYHGKICEKCFCRPGFAGDHCD-----------VDFDECLSNPCFNGATCQNKINGY-- 370
G I +C C+ G+ CD D C S C T
Sbjct: 399 DFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSE 458
Query: 371 --TCVCAPGYSGKEC----------SININECESSPCLHGATCIDE--VATFSCVCPKGL 416
C C +G+ C S +++ C C G + + C C +
Sbjct: 459 TGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHM 518
Query: 417 TGRLCE 422
GR C
Sbjct: 519 IGRQCN 524
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 31.9 bits (71), Expect = 0.50
Identities = 21/162 (12%), Positives = 34/162 (20%), Gaps = 20/162 (12%)
Query: 222 CTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDK---RAGYFCDC 278
P +C ++ T P S + D
Sbjct: 468 RDCLPTNVECSRYHLQRILVSDTFNKWTRITLP-----LPSYTRSQATRFRWHQPAPFDK 522
Query: 279 PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRP 338
T+ N G D C G C + +C C + G C++
Sbjct: 523 QQTWAIDNVY---IGDGCLDMCSGHGRC---------VQGSCVCDEQWGGLYCDEPETSL 570
Query: 339 GFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSG 380
+ +G A +SG
Sbjct: 571 PTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSG 612
Score = 31.5 bits (70), Expect = 0.56
Identities = 19/160 (11%), Positives = 36/160 (22%), Gaps = 22/160 (13%)
Query: 273 GYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPY----LVDETQHRFNCTCPSGYHG 328
DC PT + V P T+ R++ P
Sbjct: 465 PLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFD--- 521
Query: 329 KICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININ 388
+ +A D+ + + C + + + +CVC + G C
Sbjct: 522 -------KQQTWAIDNVYI------GDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPET 568
Query: 389 ECESSPCLHGATCIDEVATFSCVCPKGLTGRLCETNIDDC 428
+ + G +C
Sbjct: 569 SLPTQLKDNFNRAPS--NQNWLTVSGGKLSTVCGAVASGL 606
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 31.1 bits (69), Expect = 0.76
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 9/139 (6%)
Query: 174 GVCVDVYKGRYWELPEIRD--CTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDC 231
G ++ C S CL+ + + + + C ++ + C
Sbjct: 5 GAAAARRLDESLSAGSVQRARCASR-CLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKC 63
Query: 232 VNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYF---CDCP-PTYGGKNC 287
+ PC+ G C C SC + DCP P
Sbjct: 64 LEPCKESGDL-RKHQCQSFCEPLFPKKSYEC-LTSCEFLKYILLVKQGDCPAPEKASGFA 121
Query: 288 SVELTGCVGPDTCLNGGTC 306
+ + C + C C
Sbjct: 122 AACVESCEVDNECSGVKKC 140
Score = 28.8 bits (63), Expect = 4.9
Identities = 11/110 (10%), Positives = 28/110 (25%), Gaps = 10/110 (9%)
Query: 314 TQHRFNCTCPSGYHGKICEKCFCRPGFAGDHCD---VDFDECLSNPCFNGATCQNKINGY 370
+ + + +C+ C + + + C + Y
Sbjct: 32 SLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSY 91
Query: 371 TCVCAPGYSGKECSININEC--ESSPCLHGATCIDEVATFSCVCPKGLTG 418
C+ + + + +C A C++ SC +G
Sbjct: 92 ECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVE-----SCEVDNECSG 136
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 30.2 bits (68), Expect = 0.78
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 339 GFAGDHCDVDFDECLSNPCFN-GATCQNKINGYTCVCAPGY----SGKECSIN 386
GFA + D +EC C N I GY C C P Y K C +N
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVN 159
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.8 bits (69), Expect = 0.97
Identities = 32/217 (14%), Positives = 46/217 (21%), Gaps = 30/217 (13%)
Query: 222 CTSNPCLNDCVNPCQNG--GKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGY----- 274
C C +C++ GK ++ +G C A + P HG K
Sbjct: 157 CDILECEEECMHCSGENYDGKISKTMSGL---ECQAWDSQSPHAHGYIPSKFPNKNLKKN 213
Query: 275 FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK-PYLVDETQHRFNCTCPSGYHGKICEK 333
+C P C D C P G+ +
Sbjct: 214 YCRNPDRELRPWCFT-------TDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENY-R 265
Query: 334 CFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKINGYT-CVCAPGYSGKECSI------- 385
+G C + K C G C
Sbjct: 266 GNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNSQVRW 325
Query: 386 ---NINECESSPCLHGATCIDEVATFSCVCPKGLTGR 419
I C+SSP + V G
Sbjct: 326 EYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGD 362
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 27.6 bits (61), Expect = 1.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 332
CLN C + ++C C G+ G+ CE
Sbjct: 16 CLNDAHCF-AVKIADLPVYSCECAIGFMGQRCE 47
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.4 bits (67), Expect = 1.2
Identities = 21/146 (14%), Positives = 33/146 (22%), Gaps = 12/146 (8%)
Query: 288 SVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG-YHGKICEKCFCRPGFAGDHCD 346
+ GC G L+ T E R P K + +
Sbjct: 123 ASAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPP 182
Query: 347 VDFDEC-----LSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATC 401
D + C C + C C GY+ + +
Sbjct: 183 FGLDGVYISEPCPSYCSGHGDCISG----VCFCDLGYTAAQG--TCVSNTPNHSEMFDRF 236
Query: 402 IDEVATFSCVCPKGLTGRLCETNIDD 427
+++ G G C T D
Sbjct: 237 EGKLSPLWYKITGGQVGTGCGTLNDG 262
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 30.2 bits (67), Expect = 1.2
Identities = 27/128 (21%), Positives = 32/128 (25%), Gaps = 26/128 (20%)
Query: 300 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGDHC----DVDFDECLSN 355
C R C C G C++ C PGF +EC S
Sbjct: 268 CHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDR--CCPGFNQQPWKPATTDSANECQSC 325
Query: 356 PCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKG 415
C A C P +E S N + G C C
Sbjct: 326 NCHGHAYD--------CYYDPEVDRREASQNQDNV----YQGGGVC--------LDCQHH 365
Query: 416 LTGRLCET 423
TG CE
Sbjct: 366 TTGINCER 373
Score = 29.5 bits (65), Expect = 2.7
Identities = 31/208 (14%), Positives = 47/208 (22%), Gaps = 25/208 (12%)
Query: 160 PEIGDCSSNPCLNDGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVDEVYKGRYWELPEI 219
P + S +P L D + R+ + L D Y ++
Sbjct: 205 PGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIK-DISIG 263
Query: 220 RDCTSNPCLNDCVNPCQNGG-----KCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGY 274
C + + C C + G C P K +
Sbjct: 264 GRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQ 323
Query: 275 FCDCPPTYGGKNCSVELTGCVG----PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKI 330
C+C E+ + GG C C G
Sbjct: 324 SCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVC-------------LDCQHHTTGIN 370
Query: 331 CEKCFCRPGFAGDHCDVDFDECLSNPCF 358
CE+ C PGF + P
Sbjct: 371 CER--CLPGFFRAPDQPLDSPHVCRPAA 396
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 26.7 bits (59), Expect = 2.7
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 347 VDFDECLSNPCFNGA--------TCQNKINGYTCVCAPGY 378
VD DEC S C N + GY C C PGY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY 41
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 29.0 bits (64), Expect = 3.1
Identities = 26/159 (16%), Positives = 38/159 (23%), Gaps = 25/159 (15%)
Query: 190 IRDCTSNPCLNDGVCVDEVYKGRYWELPEIRDCTSNPCLN--DCVNPCQNGGKCNE--DE 245
+ N ++ +V K Y+ + + C +
Sbjct: 220 VTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHN 279
Query: 246 TGNYDC-TCDALHTGDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGG 304
T DC C P + + CDC EL G +GG
Sbjct: 280 TYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG-----HGG 334
Query: 305 TCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFAGD 343
C C G CE+ CR F
Sbjct: 335 HC-------------TNCRDNTDGAKCER--CRENFFRL 358
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.1 bits (65), Expect = 3.4
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 219 IRDCTS-NPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPC 262
+ ++ C + + C C + G+ C C G+
Sbjct: 12 VWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGI 56
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 28.7 bits (63), Expect = 4.9
Identities = 30/213 (14%), Positives = 54/213 (25%), Gaps = 20/213 (9%)
Query: 199 LNDGVCVDEVYKGRYWELPEIRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHT 258
V +++ + Y + + N V + +C + G + T
Sbjct: 113 TRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPAT 172
Query: 259 GDPCKHGSCVDKRAGYFCDCPPTYGGKNCSVE--------LTGCVGPDTCLNGGTCKPYL 310
+ + CP C+ E L C PD C+ +
Sbjct: 173 VINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFY 232
Query: 311 VDETQHRFNC--TCPSGYHGKICEKCFCRPGFAGDHCDVDFDECLSNPCFNGATCQNKIN 368
+D C TCP Y+ +C C +C ++ N
Sbjct: 233 LDGR-----CVETCPPPYYHFQDWRCVNF-----SFCQDLHHKCKNSRRQGCHQYVIHNN 282
Query: 369 GYTCVCAPGYSGKECSININECESSPCLHGATC 401
C GY+ ++ C
Sbjct: 283 KCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLL 315
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.4 bits (62), Expect = 5.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 331 CEKCFCRPGFAGDHCDVDFDECL 353
C C C PG G C+ E L
Sbjct: 478 CGVCSCAPGRLGRLCESRGLENL 500
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 28.2 bits (62), Expect = 6.0
Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 8/192 (4%)
Query: 222 CTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDKRAGYFCDCPPT 281
C D C++ DE G + T C G C+ C+
Sbjct: 227 CIHGSRQCDREYDCKDM----SDEVGCVNVTLCEGPNKFKCHSGECITL--DKVCNMARD 280
Query: 282 YGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKCFCRPGFA 341
+ S E G + CL+ ++ ++ + + C CP G+ +C
Sbjct: 281 CR--DWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 338
Query: 342 GDHCDVDFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATC 401
L +++ +T C S L +
Sbjct: 339 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 398
Query: 402 IDEVATFSCVCP 413
+ V
Sbjct: 399 TSLIPNLRNVVA 410
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 27.7 bits (61), Expect = 7.6
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 348 DFDECLSNPCFNGATCQNKINGYTCVCAPGYSGKECSININECESSPC 395
+ CL + + Y + +P Y G ++ +
Sbjct: 352 KYSGCLKDIEISR-------TPYNILSSPDYVGVTKGCSLENVYTVSF 392
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 28.0 bits (61), Expect = 7.8
Identities = 35/213 (16%), Positives = 61/213 (28%), Gaps = 24/213 (11%)
Query: 91 VCPPGYKEIRDCTSNPCLNDGVCVWMFDVTIQVYKGRYCELPEIGDCSSNPCLNDGVCVD 150
+CP K +C + + + +C+ C S+ C +G+C
Sbjct: 158 ICPGTAKGKTNCPATVINGQF--------VERCWTHSHCQKVCPTICKSHGCTAEGLCCH 209
Query: 151 VYKGRYCELP-EIGDCSSNPCLN---DGVCVDVYKGRYWELPEIRDCTSNPCLNDGVCVD 206
C P + C + C N DG CV+ Y+ C+N C D
Sbjct: 210 SECLGNCSQPDDPTKCVA--CRNFYLDGRCVETCPPPYYHFQ------DWRCVNFSFCQD 261
Query: 207 EVYKGRYWELPEIRDCTSNPCLND-CVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHG 265
+K + + C N+ C+ C +G N C +
Sbjct: 262 LHHKCKN---SRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGE 318
Query: 266 SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPD 298
+D T + + + G
Sbjct: 319 KTIDSVTSAQELRGCTVINGSLIINIRGGNNLA 351
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 27.7 bits (61), Expect = 8.2
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 362 TCQNKINGYTCVCAPGYSGKECSININECESSPCLHGATCIDEVATFSCVCPKGLT---- 417
+ I + A + + N ++ C H + C CP G+
Sbjct: 244 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 303
Query: 418 GRLCETN 424
G+ C+
Sbjct: 304 GKTCKDG 310
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 27.6 bits (60), Expect = 9.1
Identities = 29/207 (14%), Positives = 45/207 (21%), Gaps = 21/207 (10%)
Query: 219 IRDCTSNPCLNDCVNPCQNGGKCNEDETGNYDCTCDALHTGDPCKHGSCVDK-RAGYFCD 277
+ + D N + KC+ N C C +
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCD-PSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGK 202
Query: 278 CPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHG-KICEKCFC 336
P C+ TG CL C+ + + T TCP +
Sbjct: 203 SPSDCCHNQCAAGCTGP-RESDCL---VCRKFRDEATC---KDTCPPLMLYNPTTYQMDV 255
Query: 337 RPGFAGDHCDVDFDECLSNP-----------CFNGATCQNKINGYTCVCAPGYSGKECSI 385
P +C N C + + C G K C+
Sbjct: 256 NPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNG 315
Query: 386 NINECESSPCLHGATCIDEVATFSCVC 412
AT I + +
Sbjct: 316 IGIGEFKDSLSINATNIKHFKNCTSIS 342
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.3 bits (60), Expect = 9.5
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 4/34 (11%)
Query: 354 SNPCFNGATCQNKINGYTCVCAPGYS----GKEC 383
C +TC C G + C
Sbjct: 281 QYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.505
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,939,820
Number of extensions: 444973
Number of successful extensions: 3762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1790
Number of HSP's successfully gapped: 804
Length of query: 429
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 333
Effective length of database: 4,021,377
Effective search space: 1339118541
Effective search space used: 1339118541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)