BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11060
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 106
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 107 GTKRSCRCHEGY 118
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 106
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 107 GTKRSCRCHEGY 118
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 106
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 107 GTKRSCRCHEGY 118
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 50 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 106
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 107 GTKRSCRCHEGY 118
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 20/79 (25%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
PC PC H GSC D GY C C P Y G NC L C P D
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE------------LAKNECHPERTDGC 54
Query: 108 QH-------RFNCTCPSGY 119
QH + C+C GY
Sbjct: 55 QHFCLPGQESYTCSCAQGY 73
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 9 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 65
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 66 GTKRSCRCHEGY 77
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 58
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 59 GTKRSCRCHEGY 70
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 3 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 59
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 60 GTKRSCRCHEGY 71
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLN-GGTCKPYLVDET 107
CA SPC++G SC D+ Y C C P + G+NC + C+N G C+ Y D T
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL---ICVNENGGCEQYCSDHT 58
Query: 108 QHRFNCTCPSGY 119
+ +C C GY
Sbjct: 59 GTKRSCRCHEGY 70
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C +PC++ +C+D+ + C C P Y G +C V C CL+ G C +
Sbjct: 48 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS-SPCLHNGRCLDKI----- 101
Query: 109 HRFNCTCPSGYHGKICE 125
+ F C CP+G+ G +C+
Sbjct: 102 NEFQCECPTGFTGHLCQ 118
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 48 CPCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C +PC+H G C++ + C C Y G C +++ CV + C N TC + +
Sbjct: 8 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQIGE- 65
Query: 107 TQHRFNCTCPSGYHGKICEKITTMSFS 133
F C C GY G CE T S
Sbjct: 66 ----FQCICMPGYEGVHCEVNTDECAS 88
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVEL 84
CA SPC H G C+DK + C+CP + G C V+L
Sbjct: 86 CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 55 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 114
C HG C + + C C +GG+ C +L C CLNGGTC D ++ C+
Sbjct: 105 CVHGICNEP---WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD----KYQCS 157
Query: 115 CPSGYHGKICE 125
CP GY G CE
Sbjct: 158 CPEGYSGPNCE 168
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C +PC++ +C+D+ + C C P Y G +C V C CL+ G C +
Sbjct: 46 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECAS-SPCLHNGRCLDKI----- 99
Query: 109 HRFNCTCPSGYHGKICE 125
+ F C CP+G+ G +C+
Sbjct: 100 NEFQCECPTGFTGHLCQ 116
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 53 SPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 111
+PC+H G C++ + C C Y G C +++ CV + C N TC + + F
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQIGE-----F 64
Query: 112 NCTCPSGYHGKICEKITTMSFS 133
C C GY G CE T S
Sbjct: 65 QCICMPGYEGVHCEVNTDECAS 86
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
PCA C HG+C+D + CDC + G+ C E++ + L+ G C Y ++E
Sbjct: 10 PCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS---FLNCSLDNGGCTHYCLEEVG 66
Query: 109 HRFNCTCPSGY 119
R C+C GY
Sbjct: 67 WR-RCSCAPGY 76
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 35 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 71
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From
The Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 11 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 47
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant
Of Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 35 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 71
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin
Endoperoxide H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 11 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 47
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 15 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 51
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 3 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 39
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 3 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 39
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 4 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 40
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 4 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 40
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese
Protoporphyrin Ix- Reconstituted Ovine Prostaglandin H2
Synthase-1 Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 4 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 40
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Alclofenac
Length = 551
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 49 PCAYSPCKH-GSCVDKRAG---YFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV R G Y CDC T Y G NC++
Sbjct: 3 PCCYYPCQHQGICV--RFGLDRYQCDCTRTGYSGPNCTI 39
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
PCA C HG+C+ + CDC + G+ C E++ + L+ G C Y ++E
Sbjct: 17 PCASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQREVS---FLNCSLDNGGCTHYCLEEVG 73
Query: 109 HRFNCTCPSGY 119
R C+C GY
Sbjct: 74 WR-RCSCAPGY 83
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 26/130 (20%)
Query: 17 GKQFSIGTNSVLNVIMLKSDYRLIIRP-----LYSLCPCAYSP--CKHGSCVDKRAGYFC 69
GKQ + V +VI++ S+ I++ + C A P C++G ++R C
Sbjct: 111 GKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNER--RIC 167
Query: 70 DCPPTYGGKNCSVELTGCVGPDTCLNGGTC-KPYLVDETQHRFNCTCPSGYHGKICEKI- 127
+CP + G +C L C+NGG C P C CP G++G C+K
Sbjct: 168 ECPDGFHGPHCEKALC----TPRCMNGGLCVTPGF---------CICPPGFYGVNCDKAN 214
Query: 128 -TTMSFSGGS 136
+T F+GG+
Sbjct: 215 CSTTCFNGGT 224
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 28/90 (31%)
Query: 69 CDCPPTYGGKNCSVELTGCVGPDTCLNGGTC---------KPYLVD-------------- 105
C CPP G+ C E++ C P C NGG C K Y D
Sbjct: 231 CICPPGLEGEQC--EISKC--PQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAH 286
Query: 106 ETQHRFN-CTCPSGYHGKICEKITTMSFSG 134
T H N C C G+HG+ C K S G
Sbjct: 287 GTCHEPNKCQCQEGWHGRHCNKRYEASLIG 316
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 81 SVELTGCVGPDTCLNGGTCKP--YLVDETQHRFNCTCPSGYHGKICE 125
SV + C P C NGGTC+ Y D F C CP G+ GK CE
Sbjct: 45 SVPVKSCSEP-RCFNGGTCQQALYFSD-----FVCQCPEGFAGKSCE 85
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSV 82
CA SPC++G SC D+ Y C C P + G+NC
Sbjct: 6 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSV 82
CA SPC++G SC D+ Y C C P + G+NC
Sbjct: 6 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 45 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 99
Query: 109 HRFNCTCPSGY----HGKICEKITTMSFSGGSHIMLNTTR 144
+ C+C GY +GK C I T + G + R
Sbjct: 100 NSVVCSCARGYTLADNGKAC--IPTGPYPCGKQTLERRKR 137
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 55 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 114
CKHG C++ Y C+CP Y + CV D C G C F CT
Sbjct: 14 CKHGQCINTDGSYRCECPFGY-----ILAGNECVDTDECSVGNPCGNGTCKNVIGGFECT 68
Query: 115 CPSGYH 120
C G+
Sbjct: 69 CEEGFE 74
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 32.7 bits (73), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 59
Query: 109 HRFNCTCPSGY----HGKICEKITTMSFSGGSHIMLNTTR 144
+ C+C GY +GK C I T + G + R
Sbjct: 60 NSVVCSCARGYTLADNGKAC--IPTGPYPCGKQTLERRKR 97
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 49 PCAYSPCKHGSCV--------DKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 100
PC +PC +G D GY C CP + G +C + C + C NGG C
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECE-VEPCKNGGICT 112
Query: 101 PYLVDETQHRFNCTCPSGYHGKICE 125
+ + ++C CP + G+ C+
Sbjct: 113 DLVAN-----YSCECPGEFMGRNCQ 132
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMS 131
P+ C NGG C P L D + F+C CP G+ C + ++
Sbjct: 5 PNPCENGGICLPGLADGS---FSCECPDGFTDPNCSSVVEVA 43
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 50 CAYSPCKHGS-CVDKRA--GYFCDCPPTYGGKNCS--VEL---------TGCVGPDTCLN 95
C +PC++G C+ A + C+CP + NCS VE+ G P+ C N
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 96 GGTCK--PYLVDETQHRFNCTCPSGYHGKICE 125
GGTC+ +T + C CP G++G C+
Sbjct: 63 GGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSFSGG 135
P+ CLNGG CK + + + C C G+ GK CE T + G
Sbjct: 53 PNPCLNGGLCKDDI-----NSYECWCQVGFEGKNCELDATCNIKNG 93
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 50 CAYSPCKHGS-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C +PC +G C D Y C C + GKNC ++ T + G CK +
Sbjct: 51 CEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDAT------CNIKNGRCKQFCKTGAD 104
Query: 109 HRFNCTCPSGYH 120
+ C+C +GY
Sbjct: 105 SKVLCSCTTGYR 116
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELT 85
PC +PCK+ G C D Y CDC T Y G++C E T
Sbjct: 396 PCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREAT 434
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 68 FCDCPPTYGGK-NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICE 125
+ T G K +CS E + C N G C+ + +R+ C C +GY G+ CE
Sbjct: 376 MAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCR-----DGWNRYVCDCSGTGYLGRSCE 430
Query: 126 KITTMSFSGGSHIM 139
+ T+ GS M
Sbjct: 431 REATVLSYDGSMFM 444
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELT 85
PC +PCK+ G C D Y CDC T Y G++C E T
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREAT 659
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 79 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKITTMSFSGGSH 137
+CS E + C N G C+ + +R+ C C +GY G+ CE+ T+ GS
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCR-----DGWNRYVCDCSGTGYLGRSCEREATVLSYDGSM 667
Query: 138 IM 139
M
Sbjct: 668 FM 669
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELT 85
PC +PCK+ G C D Y CDC T Y G++C E T
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREAT 659
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 79 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKITTMSFSGGSH 137
+CS E + C N G C+ + +R+ C C +GY G+ CE+ T+ GS
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCR-----DGWNRYVCDCSGTGYLGRSCEREATVLSYDGSM 667
Query: 138 IM 139
M
Sbjct: 668 FM 669
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 45 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 99
Query: 109 HRFNCTCPSGY----HGKIC 124
+ C+C GY +GK C
Sbjct: 100 NSVVCSCARGYTLADNGKAC 119
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
C N G CK L + + CTC G+ GK CE T
Sbjct: 50 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCELFT 80
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 50 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 104
Query: 109 HRFNCTCPSGY----HGKIC 124
+ C+C GY +GK C
Sbjct: 105 NSVVCSCARGYTLADNGKAC 124
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
C N G CK L + + CTC G+ GK CE T
Sbjct: 55 CQNQGKCKDGLGE-----YTCTCLEGFEGKNCELFT 85
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSFSGG 135
P+ CLNGG CK + + + C C G+ GK CE T + G
Sbjct: 53 PNPCLNGGLCKXDI-----NSYECWCQVGFEGKNCELDATCNIKNG 93
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 50 CAYSPCKHGS-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C +PC +G C Y C C + GKNC ++ T + G CK +
Sbjct: 51 CEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDAT------CNIKNGRCKQFCKTGAD 104
Query: 109 HRFNCTCPSGYH 120
+ C+C +GY
Sbjct: 105 SKVLCSCTTGYR 116
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLNGG+CK + + + C CP G+ GK CE
Sbjct: 11 CLNGGSCKDDI-----NSYECWCPFGFEGKNCE 38
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSV 82
C +PC +G SC D Y C CP + GKNC +
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 7 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 61
Query: 109 HRFNCTCPSGY----HGKICEKITTMSFSGGSHIM 139
+ C+C GY +GK C I T + G +
Sbjct: 62 NSVVCSCARGYTLADNGKAC--IPTGPYPCGKQTL 94
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 59
Query: 109 HRFNCTCPSGY----HGKICEKITTMSFSGGSHIM 139
+ C+C GY +GK C I T + G +
Sbjct: 60 NSVVCSCARGYTLADNGKAC--IPTGPYPCGKQTL 92
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 6 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 60
Query: 109 HRFNCTCPSGY----HGKIC 124
+ C+C GY +GK C
Sbjct: 61 NSVVCSCARGYTLADNGKAC 80
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C D Y C C + GKNC + L+ G C + +E Q
Sbjct: 7 CETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 61
Query: 109 HRFNCTCPSGY----HGKICEKITTMSFSGGSHIM 139
C+C GY +GK C I T + G +
Sbjct: 62 ASVVCSCARGYTLADNGKAC--IPTGPYPCGKQTL 94
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKI 127
C NGGTC + C CP+ Y G +CEK+
Sbjct: 373 CQNGGTC--------HNNVRCLCPAAYTGILCEKL 399
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
P C NGG C R C CP G+HG CE
Sbjct: 152 PGGCRNGGFCN--------ERRICECPDGFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
P C NGG C R C CP G+HG CE
Sbjct: 152 PGGCRNGGFCN--------ERRICECPDGFHGPHCE 179
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLN G CK + D + CTC G+ GK CE
Sbjct: 55 CLNQGHCKXGIGD-----YTCTCAEGFEGKNCE 82
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 28/91 (30%)
Query: 55 CKHGSCVDKRAGYFCDCPPTY---GGKNCSVELTGCVGPDTC------LNGGTCKPYLVD 105
C H C D + GY C CP + + C ++ C PDTC L GG
Sbjct: 10 CSH-VCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQLCVNLEGG-------- 59
Query: 106 ETQHRFNCTCPSGY----HGKICEKITTMSF 132
+ C C G+ H K C+ + ++++
Sbjct: 60 -----YKCQCEEGFQLDPHTKACKAVGSIAY 85
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 54 PCKHGSCVDKRAGYFCDCPPTY----GGKNCSV 82
PC H C + GYFC CPP Y KNC V
Sbjct: 127 PCSH-FCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLN G CK + D + CTC G+ GK CE
Sbjct: 11 CLNQGHCKDGIGD-----YTCTCAEGFEGKNCE 38
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLN G CK + D + CTC G+ GK CE
Sbjct: 11 CLNQGHCKXGIGD-----YTCTCAEGFEGKNCE 38
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C SPC+ G C Y C C + GKNC + L+ G C + +E Q
Sbjct: 6 CETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCS----LDNGDCDQFCHEE-Q 60
Query: 109 HRFNCTCPSGY----HGKICEKITTMSFSGGSHIM 139
+ C+C GY +GK C I T + G +
Sbjct: 61 NSVVCSCARGYTLADNGKAC--IPTGPYPCGKQTL 93
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 93 CLNGGTCKPYLVDETQH--RFNCTCPSGYHGKICEKITTMSF 132
C+NGG C ++V + + R+ C CP+ + G C+ SF
Sbjct: 16 CVNGGEC--FMVKDLSNPSRYLCKCPNEFTGDRCQNYVMASF 55
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 55 CKHGSCVDKRAGYFCDCPPTY 75
C G+CV+ Y CDCPP +
Sbjct: 12 CISGNCVNTPGSYICDCPPDF 32
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 55 CKHGSCVDKRAGYFCDCPPTY 75
C G+CV+ Y CDCPP +
Sbjct: 12 CISGNCVNTPGSYICDCPPDF 32
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMS 131
CLNGG C + E+ + C C GY G CE ++
Sbjct: 14 CLNGGVC---MHIESLDSYTCNCVIGYSGDRCEHADLLA 49
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
C+N G C + C CP G+ G+ CEK
Sbjct: 204 ACMNNGVCH-------EDTGECICPPGFMGRTCEK 231
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 57 HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVG 89
HG CV+ Y C C P + G C ++ C
Sbjct: 130 HGECVETINNYTCKCDPGFSGLKCE-QIVNCTA 161
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 57 HGSCVDKRAGYFCDCPPTYGGKNCS 81
HG CV+ Y C C P + G C
Sbjct: 130 HGECVETINNYTCKCDPGFSGLKCE 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,115,760
Number of Sequences: 62578
Number of extensions: 211255
Number of successful extensions: 534
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 186
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)