Query psy11060
Match_columns 155
No_of_seqs 157 out of 1648
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:03:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4289|consensus 99.4 7.7E-13 1.7E-17 112.1 9.7 119 30-154 1215-1345(2531)
2 KOG1219|consensus 99.4 7.4E-13 1.6E-17 115.7 8.3 95 30-130 3878-3982(4289)
3 KOG1219|consensus 99.3 9.2E-12 2E-16 109.2 7.4 97 48-150 3865-3967(4289)
4 KOG4289|consensus 98.8 2.6E-09 5.7E-14 91.4 4.0 74 64-143 1219-1297(2531)
5 KOG1214|consensus 98.8 3.5E-08 7.6E-13 81.1 8.7 104 12-122 732-859 (1289)
6 KOG1225|consensus 98.2 8.8E-06 1.9E-10 65.2 7.7 74 37-127 265-343 (525)
7 KOG1214|consensus 98.1 4.6E-05 1E-09 63.4 9.9 128 16-145 691-847 (1289)
8 smart00179 EGF_CA Calcium-bind 97.8 5.6E-05 1.2E-09 39.0 4.4 36 84-125 2-39 (39)
9 PF00008 EGF: EGF-like domain 97.8 9.8E-06 2.1E-10 40.4 1.3 31 87-123 1-32 (32)
10 KOG1225|consensus 97.7 0.00023 5E-09 57.2 8.3 79 36-131 233-316 (525)
11 PF07645 EGF_CA: Calcium-bindi 97.7 3.1E-05 6.8E-10 41.0 2.0 33 83-120 1-34 (42)
12 cd00054 EGF_CA Calcium-binding 97.5 0.00024 5.2E-09 36.1 4.4 35 85-125 3-38 (38)
13 KOG1217|consensus 97.5 0.00045 9.8E-09 54.5 8.0 111 28-141 243-372 (487)
14 PF00008 EGF: EGF-like domain 97.5 5.5E-05 1.2E-09 37.6 1.6 29 50-78 1-31 (32)
15 KOG1217|consensus 97.3 0.0012 2.7E-08 52.0 8.1 91 29-124 184-306 (487)
16 KOG4260|consensus 97.2 0.00057 1.2E-08 50.2 4.7 90 32-132 163-276 (350)
17 smart00179 EGF_CA Calcium-bind 97.2 0.00089 1.9E-08 34.3 3.8 33 48-80 3-38 (39)
18 cd00053 EGF Epidermal growth f 97.1 0.0017 3.7E-08 32.3 4.3 28 92-124 7-35 (36)
19 PF12662 cEGF: Complement Clr- 97.0 0.00064 1.4E-08 31.4 2.2 20 110-129 1-24 (24)
20 smart00181 EGF Epidermal growt 97.0 0.0024 5.1E-08 32.0 4.1 27 92-124 7-34 (35)
21 cd00054 EGF_CA Calcium-binding 96.8 0.0029 6.3E-08 31.9 3.7 33 48-80 3-37 (38)
22 KOG1226|consensus 96.7 0.0061 1.3E-07 50.7 6.6 77 38-127 479-582 (783)
23 PF12661 hEGF: Human growth fa 96.5 0.00094 2E-08 26.2 0.6 13 112-124 1-13 (13)
24 PF07645 EGF_CA: Calcium-bindi 96.5 0.0044 9.6E-08 32.6 3.1 18 29-46 17-34 (42)
25 smart00181 EGF Epidermal growt 96.2 0.012 2.7E-07 29.2 3.8 24 54-77 7-30 (35)
26 PF12947 EGF_3: EGF domain; I 95.9 0.004 8.6E-08 31.8 1.1 26 92-122 7-32 (36)
27 cd00053 EGF Epidermal growth f 95.9 0.02 4.4E-07 28.2 3.8 27 52-78 5-32 (36)
28 PF12947 EGF_3: EGF domain; I 95.8 0.0096 2.1E-07 30.3 2.2 26 23-48 7-32 (36)
29 PHA03099 epidermal growth fact 95.7 0.011 2.3E-07 38.7 2.8 43 84-130 42-86 (139)
30 PHA02887 EGF-like protein; Pro 95.6 0.017 3.6E-07 37.2 3.3 40 84-127 83-124 (126)
31 PF07974 EGF_2: EGF-like domai 95.1 0.043 9.2E-07 27.1 3.2 26 92-124 7-32 (32)
32 KOG3514|consensus 95.0 0.044 9.6E-07 47.6 4.7 64 86-155 625-693 (1591)
33 KOG4260|consensus 94.9 0.02 4.3E-07 42.4 2.3 71 40-120 221-304 (350)
34 PF14670 FXa_inhibition: Coagu 94.5 0.026 5.7E-07 28.7 1.6 18 29-46 11-28 (36)
35 KOG0994|consensus 93.7 0.12 2.6E-06 45.4 4.7 67 16-82 864-949 (1758)
36 smart00051 DSL delta serrate l 93.4 0.15 3.3E-06 29.3 3.5 47 67-124 17-63 (63)
37 KOG1226|consensus 91.5 0.89 1.9E-05 38.5 6.8 55 68-131 567-626 (783)
38 KOG0994|consensus 91.3 0.44 9.6E-06 42.2 5.1 36 11-46 972-1008(1758)
39 KOG1836|consensus 87.3 2.2 4.7E-05 39.8 6.6 65 18-83 738-814 (1705)
40 PHA02887 EGF-like protein; Pro 87.2 0.68 1.5E-05 29.9 2.6 28 54-81 93-122 (126)
41 cd01475 vWA_Matrilin VWA_Matri 87.2 0.89 1.9E-05 32.7 3.6 37 77-121 181-218 (224)
42 KOG3516|consensus 86.9 1 2.2E-05 40.0 4.2 51 86-142 957-1008(1306)
43 PHA03099 epidermal growth fact 85.2 0.9 2E-05 29.9 2.4 29 54-82 52-82 (139)
44 KOG3512|consensus 82.7 6 0.00013 32.0 6.4 100 26-131 360-484 (592)
45 KOG3516|consensus 82.4 1.2 2.7E-05 39.5 2.8 38 47-84 545-584 (1306)
46 cd01475 vWA_Matrilin VWA_Matri 76.8 2.5 5.3E-05 30.4 2.6 18 59-76 200-217 (224)
47 KOG1836|consensus 72.1 13 0.00028 35.0 6.3 41 87-131 777-818 (1705)
48 KOG3514|consensus 71.1 8.1 0.00018 34.5 4.5 60 91-155 216-282 (1591)
49 PF06247 Plasmod_Pvs28: Plasmo 69.1 1.8 3.9E-05 30.5 0.3 67 53-120 6-79 (197)
50 PF06247 Plasmod_Pvs28: Plasmo 67.8 2.7 5.9E-05 29.6 1.0 80 35-121 68-161 (197)
51 PF00053 Laminin_EGF: Laminin 64.1 3.8 8.2E-05 21.9 0.9 18 109-126 16-33 (49)
52 smart00180 EGF_Lam Laminin-typ 64.0 8.1 0.00018 20.4 2.2 17 110-126 17-33 (46)
53 PF12955 DUF3844: Domain of un 62.6 3.6 7.9E-05 26.1 0.7 38 91-128 13-63 (103)
54 PF12946 EGF_MSP1_1: MSP1 EGF 61.7 2.8 6E-05 21.4 0.1 25 92-120 6-30 (37)
55 cd00055 EGF_Lam Laminin-type e 60.7 9 0.00019 20.6 2.0 17 110-126 18-34 (50)
56 PF00954 S_locus_glycop: S-loc 58.1 18 0.00038 22.9 3.4 33 83-121 76-108 (110)
57 PF01414 DSL: Delta serrate li 53.2 1.9 4E-05 24.8 -1.6 47 67-124 17-63 (63)
58 KOG3509|consensus 49.1 51 0.0011 29.4 5.6 67 47-118 406-473 (964)
59 PF01683 EB: EB module; Inter 49.1 38 0.00083 18.1 3.4 20 92-120 27-46 (52)
60 PF09064 Tme5_EGF_like: Thromb 33.6 26 0.00057 17.4 1.0 12 37-48 18-29 (34)
No 1
>KOG4289|consensus
Probab=99.43 E-value=7.7e-13 Score=112.15 Aligned_cols=119 Identities=31% Similarity=0.704 Sum_probs=98.3
Q ss_pred eEEcCCceEEEcCCCCc-------cCCCCCCCCCCC-eeEeCCCCeeeeCCCCCCCCCceecCC--CCCCCCCCCCCCee
Q psy11060 30 VIMLKSDYRLIIRPLYS-------LCPCAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELT--GCVGPDTCLNGGTC 99 (155)
Q Consensus 30 c~~~~~~~~C~C~~g~~-------~~~C~~~~c~~~-~C~~~~~~~~c~C~~g~~g~~c~~~~~--~C~~~~~c~~~~~C 99 (155)
=++..+++.|.|++||+ +|.|.+.||.++ .|....++|+|.|.++|+|..|+.+.. .|.++ .|.++++|
T Consensus 1215 pi~pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpG-vC~nggtC 1293 (2531)
T KOG4289|consen 1215 PIHPVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPG-VCKNGGTC 1293 (2531)
T ss_pred eccccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCccccc-eecCCCEE
Confidence 35777899999999998 555667899885 999999999999999999999997653 58888 99999999
Q ss_pred ecCccCCCCCCeEeeCCCC-CCCCCCCcCcccccCCCceEeecCCCCC-cceEEEEe
Q psy11060 100 KPYLVDETQHRFNCTCPSG-YHGKICEKITTMSFSGGSHIMLNTTREE-GYDISFIL 154 (155)
Q Consensus 100 ~~~~~~~~~~~~~C~C~~g-~~g~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 154 (155)
.. ...+.+.|.|+.| |++..|+ +...+|.+.+++.+++..++ ..++++.|
T Consensus 1294 ~~----~~nggf~c~Cp~ge~e~prC~-v~trSFp~~sfv~frglrqRfh~Tlslsf 1345 (2531)
T KOG4289|consen 1294 VN----LLNGGFCCHCPYGEFEDPRCE-VTTRSFPPESFVTFRGLRQRFHFTLSLSF 1345 (2531)
T ss_pred ee----cCCCceeccCCCcccCCCceE-EEeeccCchheEEEeccccceEEEEEEEE
Confidence 83 3447788999988 4578887 67789999999999998655 55666655
No 2
>KOG1219|consensus
Probab=99.41 E-value=7.4e-13 Score=115.74 Aligned_cols=95 Identities=33% Similarity=0.796 Sum_probs=82.5
Q ss_pred eE-EcCCceEEEcCCCCcc-------CCCCCCCCCCC-eeEeCCCCeeeeCCCCCCCCCceec-CCCCCCCCCCCCCCee
Q psy11060 30 VI-MLKSDYRLIIRPLYSL-------CPCAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVE-LTGCVGPDTCLNGGTC 99 (155)
Q Consensus 30 c~-~~~~~~~C~C~~g~~~-------~~C~~~~c~~~-~C~~~~~~~~c~C~~g~~g~~c~~~-~~~C~~~~~c~~~~~C 99 (155)
|. ...++|.|.|++.|.+ ++|.++||..| +|+...++|.|.|+.+|+|.+|+.. +++|..+ +|.+++.|
T Consensus 3878 C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n-~C~~gg~C 3956 (4289)
T KOG1219|consen 3878 CISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGISECSKN-VCGTGGQC 3956 (4289)
T ss_pred ecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeecccccccccc-cccCCcee
Confidence 44 3467899999999984 55667899987 9999999999999999999999988 7899988 99999999
Q ss_pred ecCccCCCCCCeEeeCCCCCCCCCCCcCccc
Q psy11060 100 KPYLVDETQHRFNCTCPSGYHGKICEKITTM 130 (155)
Q Consensus 100 ~~~~~~~~~~~~~C~C~~g~~g~~C~~~~~~ 130 (155)
. +..++|+|.|.+|+.|..|.....-
T Consensus 3957 ~-----n~~gsf~CncT~g~~gr~c~~~~pn 3982 (4289)
T KOG1219|consen 3957 I-----NIPGSFHCNCTPGILGRTCCAEKPN 3982 (4289)
T ss_pred e-----ccCCceEeccChhHhcccCccccCc
Confidence 9 8999999999999999999655433
No 3
>KOG1219|consensus
Probab=99.28 E-value=9.2e-12 Score=109.19 Aligned_cols=97 Identities=37% Similarity=0.920 Sum_probs=83.7
Q ss_pred CCCCCCCCCCC-eeEeC-CCCeeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCC
Q psy11060 48 CPCAYSPCKHG-SCVDK-RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125 (155)
Q Consensus 48 ~~C~~~~c~~~-~C~~~-~~~~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~ 125 (155)
+.|..+||.+| .|... .++|.|.|++.|.|..|+.++..|.++ ||..+++|. ...++|.|.|+.||+|.+|+
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~epC~sn-PC~~GgtCi-----p~~n~f~CnC~~gyTG~~Ce 3938 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLEPCASN-PCLTGGTCI-----PFYNGFLCNCPNGYTGKRCE 3938 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCcccccccccccCC-CCCCCCEEE-----ecCCCeeEeCCCCccCceee
Confidence 88999999997 99876 578999999999999999999999999 999999999 56789999999999999998
Q ss_pred cC--cccccC--CCceEeecCCCCCcceE
Q psy11060 126 KI--TTMSFS--GGSHIMLNTTREEGYDI 150 (155)
Q Consensus 126 ~~--~~~~~~--~~~~~~~~~~~~~~~~~ 150 (155)
.. .+|+-+ +.+.+|+|.++...+++
T Consensus 3939 ~~Gi~eCs~n~C~~gg~C~n~~gsf~Cnc 3967 (4289)
T KOG1219|consen 3939 ARGISECSKNVCGTGGQCINIPGSFHCNC 3967 (4289)
T ss_pred cccccccccccccCCceeeccCCceEecc
Confidence 75 567643 55778888887655544
No 4
>KOG4289|consensus
Probab=98.83 E-value=2.6e-09 Score=91.45 Aligned_cols=74 Identities=27% Similarity=0.714 Sum_probs=61.1
Q ss_pred CCCeeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcCcccc-----cCCCceE
Q psy11060 64 RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMS-----FSGGSHI 138 (155)
Q Consensus 64 ~~~~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~~~~~-----~~~~~~~ 138 (155)
.++++|.|++||+|..|+.+++.|.+. ||.+++.|. ...++|.|.|.+||+|++|+...+.. .......
T Consensus 1219 vnglrCrCPpGFTgd~CeTeiDlCYs~-pC~nng~C~-----srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggt 1292 (2531)
T KOG4289|consen 1219 VNGLRCRCPPGFTGDYCETEIDLCYSG-PCGNNGRCR-----SREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGT 1292 (2531)
T ss_pred cCceeEeCCCCCCcccccchhHhhhcC-CCCCCCceE-----EecCceeEEecCCccccceeeecccCccccceecCCCE
Confidence 467899999999999999999999999 999999999 56789999999999999998754432 2233445
Q ss_pred eecCC
Q psy11060 139 MLNTT 143 (155)
Q Consensus 139 ~~~~~ 143 (155)
|++.+
T Consensus 1293 C~~~~ 1297 (2531)
T KOG4289|consen 1293 CVNLL 1297 (2531)
T ss_pred EeecC
Confidence 55554
No 5
>KOG1214|consensus
Probab=98.78 E-value=3.5e-08 Score=81.12 Aligned_cols=104 Identities=29% Similarity=0.619 Sum_probs=77.9
Q ss_pred eccCCCCCceecCCCcceeEEcCCceEEEcCCCCc--cC--CC-------CCCCCCC--------C--eeEeC-CCCeee
Q psy11060 12 LDLLHGKQFSIGTNSVLNVIMLKSDYRLIIRPLYS--LC--PC-------AYSPCKH--------G--SCVDK-RAGYFC 69 (155)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~c~~~~~~~~C~C~~g~~--~~--~C-------~~~~c~~--------~--~C~~~-~~~~~c 69 (155)
.+.+..+.+...+.+...|++..+.|+|+|..||. .+ .| ..++|.. + .|+.. .+.|.|
T Consensus 732 ~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C 811 (1289)
T KOG1214|consen 732 VDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSC 811 (1289)
T ss_pred CChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEE
Confidence 34555555666677778899999999999999986 11 12 1133322 2 45443 567999
Q ss_pred eCCCCCCCC--CceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCC
Q psy11060 70 DCPPTYGGK--NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGK 122 (155)
Q Consensus 70 ~C~~g~~g~--~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~ 122 (155)
.|.+||.|. .|. ++++|.++ .|+..+.|. ++++++.|+|.+||.|+
T Consensus 812 ~CLPGfsGDG~~c~-dvDeC~ps-rChp~A~Cy-----ntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 812 ACLPGFSGDGHQCT-DVDECSPS-RCHPAATCY-----NTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred eecCCccCCccccc-cccccCcc-ccCCCceEe-----cCCCcceeecccCccCC
Confidence 999999754 565 67999988 999999999 89999999999999943
No 6
>KOG1225|consensus
Probab=98.17 E-value=8.8e-06 Score=65.16 Aligned_cols=74 Identities=36% Similarity=0.820 Sum_probs=56.8
Q ss_pred eEEEcCCCCccCCCCCCCCC----CC-eeEeCCCCeeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCCe
Q psy11060 37 YRLIIRPLYSLCPCAYSPCK----HG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRF 111 (155)
Q Consensus 37 ~~C~C~~g~~~~~C~~~~c~----~~-~C~~~~~~~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~ 111 (155)
.+|.|++||.++.|....|. .+ .+++. .|.|.++|.|..|++. .|.. .|..++.|+ ..
T Consensus 265 G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g----~CiC~~g~~G~dCs~~--~cpa--dC~g~G~Ci---------~G 327 (525)
T KOG1225|consen 265 GRCICPPGFTGDDCDELVCPVDCSGGGVCVDG----ECICNPGYSGKDCSIR--RCPA--DCSGHGKCI---------DG 327 (525)
T ss_pred CeEeCCCCCcCCCCCcccCCcccCCCceecCC----EeecCCCccccccccc--cCCc--cCCCCCccc---------CC
Confidence 47899999998888764443 32 44332 8999999999999633 3654 599999997 46
Q ss_pred EeeCCCCCCCCCCCcC
Q psy11060 112 NCTCPSGYHGKICEKI 127 (155)
Q Consensus 112 ~C~C~~g~~g~~C~~~ 127 (155)
.|.|.+||+|..|+..
T Consensus 328 ~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 328 ECLCDEGYTGELCIQR 343 (525)
T ss_pred ceEeCCCCcCCccccc
Confidence 8999999999999886
No 7
>KOG1214|consensus
Probab=98.06 E-value=4.6e-05 Score=63.41 Aligned_cols=128 Identities=20% Similarity=0.393 Sum_probs=83.1
Q ss_pred CCCCceecCCCcce---eEEc-CCceEEEcCCCCc--------cCCCCCCC--CCCC-eeEeCCCCeeeeCCCCCC--C-
Q psy11060 16 HGKQFSIGTNSVLN---VIML-KSDYRLIIRPLYS--------LCPCAYSP--CKHG-SCVDKRAGYFCDCPPTYG--G- 77 (155)
Q Consensus 16 ~~~~~~~~~~~~~~---c~~~-~~~~~C~C~~g~~--------~~~C~~~~--c~~~-~C~~~~~~~~c~C~~g~~--g- 77 (155)
...+|..+++-+.. |... ...|.|.|..||. .++|+..+ |... .|++.++.++|.|..+|. +
T Consensus 691 ~~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd 770 (1289)
T KOG1214|consen 691 PVNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADD 770 (1289)
T ss_pred ccccceecCcccCCCccccCCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccC
Confidence 34567666666643 5433 4469999999998 34444322 4333 899999999999998873 2
Q ss_pred -CCcee-----cCCCCCCC-CCCCCCCeeecCccCCCCCCeEeeCCCCCC--CCCCCcCcccccCCC--ceEeecCCCC
Q psy11060 78 -KNCSV-----ELTGCVGP-DTCLNGGTCKPYLVDETQHRFNCTCPSGYH--GKICEKITTMSFSGG--SHIMLNTTRE 145 (155)
Q Consensus 78 -~~c~~-----~~~~C~~~-~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~--g~~C~~~~~~~~~~~--~~~~~~~~~~ 145 (155)
-.|.. ..+.|... +.|...+.|.-. -...+.|.|.|.|||. |..|.++++|+-+.. .-.|+|+|.+
T Consensus 771 ~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~--~hGgs~y~C~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntpgs 847 (1289)
T KOG1214|consen 771 RHTCVLITPPAPANPCEDGSHTCAIAGQARCV--HHGGSTYSCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGS 847 (1289)
T ss_pred CcceEEecCCCCCCccccCccccCcCCceEEE--ecCCceEEEeecCCccCCccccccccccCccccCCCceEecCCCc
Confidence 34532 22445555 456555544311 1455789999999999 677999999975543 4467887743
No 8
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.82 E-value=5.6e-05 Score=38.98 Aligned_cols=36 Identities=44% Similarity=1.153 Sum_probs=29.5
Q ss_pred CCCCCC-CCCCCCCCeeecCccCCCCCCeEeeCCCCCC-CCCCC
Q psy11060 84 LTGCVG-PDTCLNGGTCKPYLVDETQHRFNCTCPSGYH-GKICE 125 (155)
Q Consensus 84 ~~~C~~-~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~-g~~C~ 125 (155)
+++|.. . +|.+++.|. +..++|.|.|++||. |..|+
T Consensus 2 ~~~C~~~~-~C~~~~~C~-----~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGN-PCQNGGTCV-----NTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCC-CcCCCCEeE-----CCCCCeEeECCCCCccCCcCC
Confidence 356665 5 798888999 788899999999999 88774
No 9
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.81 E-value=9.8e-06 Score=40.41 Aligned_cols=31 Identities=45% Similarity=1.135 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCeeecCccCCCC-CCeEeeCCCCCCCCC
Q psy11060 87 CVGPDTCLNGGTCKPYLVDETQ-HRFNCTCPSGYHGKI 123 (155)
Q Consensus 87 C~~~~~c~~~~~C~~~~~~~~~-~~~~C~C~~g~~g~~ 123 (155)
|.+. +|.++++|+ ... +.|.|.|++||+|.+
T Consensus 1 C~~~-~C~n~g~C~-----~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSN-PCQNGGTCI-----DLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTT-SSTTTEEEE-----EESTSEEEEEEBTTEESTT
T ss_pred CCCC-cCCCCeEEE-----eCCCCCEEeECCCCCccCC
Confidence 3455 899999999 455 889999999999864
No 10
>KOG1225|consensus
Probab=97.71 E-value=0.00023 Score=57.20 Aligned_cols=79 Identities=32% Similarity=0.638 Sum_probs=60.7
Q ss_pred ceEEEcCCCCccCCCCCCCCCCC-----eeEeCCCCeeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCC
Q psy11060 36 DYRLIIRPLYSLCPCAYSPCKHG-----SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 110 (155)
Q Consensus 36 ~~~C~C~~g~~~~~C~~~~c~~~-----~C~~~~~~~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~ 110 (155)
+..|.|..+|.+..|....|.++ .|++. +|.|++||.|..|.. ..|... |..++.+. .
T Consensus 233 ~~ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G----~CIC~~Gf~G~dC~e--~~Cp~~--cs~~g~~~---------~ 295 (525)
T KOG1225|consen 233 DGICECPEGYFGPLCSTIYCPGGCTGRGQCVEG----RCICPPGFTGDDCDE--LVCPVD--CSGGGVCV---------D 295 (525)
T ss_pred CceeecCCceeCCccccccCCCCCcccceEeCC----eEeCCCCCcCCCCCc--ccCCcc--cCCCceec---------C
Confidence 34799999999999986666553 56655 899999999999963 457654 77777776 2
Q ss_pred eEeeCCCCCCCCCCCcCcccc
Q psy11060 111 FNCTCPSGYHGKICEKITTMS 131 (155)
Q Consensus 111 ~~C~C~~g~~g~~C~~~~~~~ 131 (155)
..|.|++||+|+.|+......
T Consensus 296 g~CiC~~g~~G~dCs~~~cpa 316 (525)
T KOG1225|consen 296 GECICNPGYSGKDCSIRRCPA 316 (525)
T ss_pred CEeecCCCccccccccccCCc
Confidence 389999999999998655443
No 11
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.67 E-value=3.1e-05 Score=41.04 Aligned_cols=33 Identities=33% Similarity=1.019 Sum_probs=28.6
Q ss_pred cCCCCCCC-CCCCCCCeeecCccCCCCCCeEeeCCCCCC
Q psy11060 83 ELTGCVGP-DTCLNGGTCKPYLVDETQHRFNCTCPSGYH 120 (155)
Q Consensus 83 ~~~~C~~~-~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~ 120 (155)
++++|... +.|...+.|+ |+.++|.|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~-----N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCV-----NTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEE-----EETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEE-----cCCCCEEeeCCCCcE
Confidence 46788776 5798889999 899999999999997
No 12
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.55 E-value=0.00024 Score=36.09 Aligned_cols=35 Identities=46% Similarity=1.175 Sum_probs=28.4
Q ss_pred CCCCC-CCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCC
Q psy11060 85 TGCVG-PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125 (155)
Q Consensus 85 ~~C~~-~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~ 125 (155)
++|.. . +|.+++.|. +..+.|.|.|+++|.|..|+
T Consensus 3 ~~C~~~~-~C~~~~~C~-----~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGN-PCQNGGTCV-----NTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCC-CcCCCCEeE-----CCCCCeEeECCCCCcCCcCC
Confidence 45655 4 788888998 77888999999999998774
No 13
>KOG1217|consensus
Probab=97.55 E-value=0.00045 Score=54.52 Aligned_cols=111 Identities=29% Similarity=0.659 Sum_probs=78.3
Q ss_pred ceeEEcCCceEEEcCCCCccCC---------CCCCC-CCCC-eeEeCCCCeeeeCCCCCCCCCc--eecCCCCCC---CC
Q psy11060 28 LNVIMLKSDYRLIIRPLYSLCP---------CAYSP-CKHG-SCVDKRAGYFCDCPPTYGGKNC--SVELTGCVG---PD 91 (155)
Q Consensus 28 ~~c~~~~~~~~C~C~~g~~~~~---------C~~~~-c~~~-~C~~~~~~~~c~C~~g~~g~~c--~~~~~~C~~---~~ 91 (155)
..|.+..++|.|.|+.||.++. |.... |.++ +|+...+.|.|.|+++|.+..+ ..+...|.. ..
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~ 322 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGG 322 (487)
T ss_pred CcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCccccccccccccccCC
Confidence 5677888889999999998554 44443 7765 9998888899999999999887 223356642 23
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcCc-ccccCC--CceEeec
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT-TMSFSG--GSHIMLN 141 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~~-~~~~~~--~~~~~~~ 141 (155)
+|.++..|... .....+.|.|.++|.|..|+... ++.... ....+++
T Consensus 323 ~c~~g~~C~~~---~~~~~~~C~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~ 372 (487)
T KOG1217|consen 323 PCANGGTCNTL---GSFGGFRCACGPGFTGRRCEDSNDECASSPCCPGGTCVN 372 (487)
T ss_pred cCCCCcccccC---CCCCCCCcCCCCCCCCCccccCCccccCCccccCCEecc
Confidence 67777778311 34456789999999999999874 665432 3444554
No 14
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.52 E-value=5.5e-05 Score=37.64 Aligned_cols=29 Identities=52% Similarity=1.455 Sum_probs=24.0
Q ss_pred CCCCCCCCC-eeEeCC-CCeeeeCCCCCCCC
Q psy11060 50 CAYSPCKHG-SCVDKR-AGYFCDCPPTYGGK 78 (155)
Q Consensus 50 C~~~~c~~~-~C~~~~-~~~~c~C~~g~~g~ 78 (155)
|.++||.++ +|+... ..|.|.|+++|.|+
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 456788886 998887 88999999998876
No 15
>KOG1217|consensus
Probab=97.35 E-value=0.0012 Score=52.05 Aligned_cols=91 Identities=32% Similarity=0.831 Sum_probs=67.3
Q ss_pred eeEEcCCceEEEcCCCCccCCCCCC---------------------CCCC---------CeeEeCCCCeeeeCCCCCCCC
Q psy11060 29 NVIMLKSDYRLIIRPLYSLCPCAYS---------------------PCKH---------GSCVDKRAGYFCDCPPTYGGK 78 (155)
Q Consensus 29 ~c~~~~~~~~C~C~~g~~~~~C~~~---------------------~c~~---------~~C~~~~~~~~c~C~~g~~g~ 78 (155)
.|.+..++|.|.|..+|.+..|... .|.. +.|++..+.+.|.+.++|.+.
T Consensus 184 ~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~ 263 (487)
T KOG1217|consen 184 TCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGD 263 (487)
T ss_pred ccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCcccccccccCCCCcccccCCceeeeCCCCcccc
Confidence 4788888899999999985544322 1111 245555667899999999877
Q ss_pred C--ceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCC
Q psy11060 79 N--CSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 124 (155)
Q Consensus 79 ~--c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C 124 (155)
. ...+++.|.....|.+++.|. +..+.|.|.|++||+|..|
T Consensus 264 ~~~~~~~~~~C~~~~~c~~~~~C~-----~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 264 ACVTCVDVDSCALIASCPNGGTCV-----NVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred ccceeeeccccCCCCccCCCCeee-----cCCCcceeeCCCCCCCCCC
Confidence 5 334678888771288889998 6666799999999999987
No 16
>KOG4260|consensus
Probab=97.25 E-value=0.00057 Score=50.22 Aligned_cols=90 Identities=21% Similarity=0.527 Sum_probs=57.3
Q ss_pred EcCCceEEEcCCCCccCCCCC-----------------CCCCCC---eeEeCCCCeee-eCCCCCC--CCCceecCCCCC
Q psy11060 32 MLKSDYRLIIRPLYSLCPCAY-----------------SPCKHG---SCVDKRAGYFC-DCPPTYG--GKNCSVELTGCV 88 (155)
Q Consensus 32 ~~~~~~~C~C~~g~~~~~C~~-----------------~~c~~~---~C~~~~~~~~c-~C~~g~~--g~~c~~~~~~C~ 88 (155)
...|+..|.|..||.+..|.. ..|..+ .|... ..-.| .|..||. -..| .++++|.
T Consensus 163 sR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~-~~k~C~kCkkGW~lde~gC-vDvnEC~ 240 (350)
T KOG4260|consen 163 SREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGE-SSKGCSKCKKGWKLDEEGC-VDVNECQ 240 (350)
T ss_pred CCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCC-CCCChhhhcccceeccccc-ccHHHHh
Confidence 446678899999998766631 011111 22211 11122 3667774 2335 4788887
Q ss_pred CC-CCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcCccccc
Q psy11060 89 GP-DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSF 132 (155)
Q Consensus 89 ~~-~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~~~~~~ 132 (155)
.. .+|.....|+ |+.++|.|.+.+||.+. +++|.+
T Consensus 241 ~ep~~c~~~qfCv-----NteGSf~C~dk~Gy~~g----~d~C~~ 276 (350)
T KOG4260|consen 241 NEPAPCKAHQFCV-----NTEGSFKCEDKEGYKKG----VDECQF 276 (350)
T ss_pred cCCCCCChhheee-----cCCCceEecccccccCC----hHHhhh
Confidence 65 5898888999 89999999999999852 555554
No 17
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.17 E-value=0.00089 Score=34.28 Aligned_cols=33 Identities=48% Similarity=1.320 Sum_probs=24.6
Q ss_pred CCCCC-CCCCCC-eeEeCCCCeeeeCCCCCC-CCCc
Q psy11060 48 CPCAY-SPCKHG-SCVDKRAGYFCDCPPTYG-GKNC 80 (155)
Q Consensus 48 ~~C~~-~~c~~~-~C~~~~~~~~c~C~~g~~-g~~c 80 (155)
++|.. .+|.++ .|++..+.|.|.|+++|. |..|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C 38 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence 55665 677765 888888888888888887 6655
No 18
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=97.07 E-value=0.0017 Score=32.27 Aligned_cols=28 Identities=50% Similarity=1.280 Sum_probs=24.0
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCCCC-CC
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGK-IC 124 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~-~C 124 (155)
+|.+++.|. +..+.+.|.|+.||.|. .|
T Consensus 7 ~C~~~~~C~-----~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 7 PCSNGGTCV-----NTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCEEe-----cCCCCeEeECCCCCcccCCc
Confidence 788888998 67788999999999988 55
No 19
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.04 E-value=0.00064 Score=31.37 Aligned_cols=20 Identities=45% Similarity=1.340 Sum_probs=17.1
Q ss_pred CeEeeCCCCCC----CCCCCcCcc
Q psy11060 110 RFNCTCPSGYH----GKICEKITT 129 (155)
Q Consensus 110 ~~~C~C~~g~~----g~~C~~~~~ 129 (155)
+|.|.|++||. |..|.+++|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 58999999998 778988875
No 20
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.96 E-value=0.0024 Score=31.98 Aligned_cols=27 Identities=52% Similarity=1.288 Sum_probs=23.0
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCCC-CCC
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYHG-KIC 124 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g-~~C 124 (155)
+|.++ .|. +..+.+.|.|++||.| ..|
T Consensus 7 ~C~~~-~C~-----~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 7 PCSNG-TCI-----NTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCC-EEE-----CCCCCeEeECCCCCccCCcc
Confidence 78777 898 6788999999999998 655
No 21
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.79 E-value=0.0029 Score=31.89 Aligned_cols=33 Identities=48% Similarity=1.298 Sum_probs=23.9
Q ss_pred CCCCC-CCCCCC-eeEeCCCCeeeeCCCCCCCCCc
Q psy11060 48 CPCAY-SPCKHG-SCVDKRAGYFCDCPPTYGGKNC 80 (155)
Q Consensus 48 ~~C~~-~~c~~~-~C~~~~~~~~c~C~~g~~g~~c 80 (155)
++|.. .+|.++ .|++..+.|.|.|..+|.|..|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence 45655 567654 7887778888888888877655
No 22
>KOG1226|consensus
Probab=96.69 E-value=0.0061 Score=50.74 Aligned_cols=77 Identities=25% Similarity=0.514 Sum_probs=50.3
Q ss_pred EEEcCCCCccCCCC--------------------CCCCCC-CeeEeCCCCeeeeCCCCCC----CCCceecCCCCCCC--
Q psy11060 38 RLIIRPLYSLCPCA--------------------YSPCKH-GSCVDKRAGYFCDCPPTYG----GKNCSVELTGCVGP-- 90 (155)
Q Consensus 38 ~C~C~~g~~~~~C~--------------------~~~c~~-~~C~~~~~~~~c~C~~g~~----g~~c~~~~~~C~~~-- 90 (155)
.|.|.+||.++.|. ..+|+. |.|+=. .|.|.+... |+.|+-+--.|...
T Consensus 479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDnfsC~r~~g 554 (783)
T KOG1226|consen 479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDNFSCERHKG 554 (783)
T ss_pred ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeeeeeeccCcccccccC
Confidence 46899999866652 013444 344322 667766654 88887554445433
Q ss_pred CCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcC
Q psy11060 91 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKI 127 (155)
Q Consensus 91 ~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~ 127 (155)
..|..++.|. -..|.|.+||+|..|.-.
T Consensus 555 ~lC~g~G~C~---------CG~CvC~~GwtG~~C~C~ 582 (783)
T KOG1226|consen 555 VLCGGHGRCE---------CGRCVCNPGWTGSACNCP 582 (783)
T ss_pred cccCCCCeEe---------CCcEEcCCCCccCCCCCC
Confidence 3588888886 468999999999998643
No 23
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.54 E-value=0.00094 Score=26.21 Aligned_cols=13 Identities=46% Similarity=1.449 Sum_probs=10.4
Q ss_pred EeeCCCCCCCCCC
Q psy11060 112 NCTCPSGYHGKIC 124 (155)
Q Consensus 112 ~C~C~~g~~g~~C 124 (155)
.|.|++||+|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4899999999887
No 24
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.46 E-value=0.0044 Score=32.64 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.2
Q ss_pred eeEEcCCceEEEcCCCCc
Q psy11060 29 NVIMLKSDYRLIIRPLYS 46 (155)
Q Consensus 29 ~c~~~~~~~~C~C~~g~~ 46 (155)
.|+|..|+|.|.|++||.
T Consensus 17 ~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 17 TCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp EEEEETTEEEEEESTTEE
T ss_pred EEEcCCCCEEeeCCCCcE
Confidence 355555555555555544
No 25
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.19 E-value=0.012 Score=29.24 Aligned_cols=24 Identities=46% Similarity=1.413 Sum_probs=13.1
Q ss_pred CCCCCeeEeCCCCeeeeCCCCCCC
Q psy11060 54 PCKHGSCVDKRAGYFCDCPPTYGG 77 (155)
Q Consensus 54 ~c~~~~C~~~~~~~~c~C~~g~~g 77 (155)
+|.++.|++..+.+.|.|+++|.+
T Consensus 7 ~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 7 PCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCEEECCCCCeEeECCCCCcc
Confidence 444334555555566666666655
No 26
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.92 E-value=0.004 Score=31.76 Aligned_cols=26 Identities=38% Similarity=0.976 Sum_probs=20.0
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCCCC
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGK 122 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~ 122 (155)
.|+..+.|. ++.+++.|.|++||.|.
T Consensus 7 ~C~~nA~C~-----~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCT-----NTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GS-TTCEEE-----E-TTSEEEEE-CEEECC
T ss_pred CCCCCcEee-----cCCCCEEeECCCCCccC
Confidence 688889999 77889999999999864
No 27
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=95.91 E-value=0.02 Score=28.15 Aligned_cols=27 Identities=44% Similarity=1.200 Sum_probs=18.4
Q ss_pred CCCCCCC-eeEeCCCCeeeeCCCCCCCC
Q psy11060 52 YSPCKHG-SCVDKRAGYFCDCPPTYGGK 78 (155)
Q Consensus 52 ~~~c~~~-~C~~~~~~~~c~C~~g~~g~ 78 (155)
..+|.++ .|++..+.+.|.|+.+|.+.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 3456553 77777777788888777665
No 28
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.79 E-value=0.0096 Score=30.33 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=18.9
Q ss_pred cCCCcceeEEcCCceEEEcCCCCccC
Q psy11060 23 GTNSVLNVIMLKSDYRLIIRPLYSLC 48 (155)
Q Consensus 23 ~~~~~~~c~~~~~~~~C~C~~g~~~~ 48 (155)
++++.+.|++..+.|.|+|.+||.+|
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCcEeecCCCCEEeECCCCCccC
Confidence 45667788999999999999998865
No 29
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=95.73 E-value=0.011 Score=38.66 Aligned_cols=43 Identities=26% Similarity=0.670 Sum_probs=31.8
Q ss_pred CCCCCCC--CCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcCccc
Q psy11060 84 LTGCVGP--DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTM 130 (155)
Q Consensus 84 ~~~C~~~--~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~~~~ 130 (155)
+..|... +.|.++ .|... .....+.|.|..||+|.+|+..+-.
T Consensus 42 i~~Cp~ey~~YClHG-~C~yI---~dl~~~~CrC~~GYtGeRCEh~dLl 86 (139)
T PHA03099 42 IRLCGPEGDGYCLHG-DCIHA---RDIDGMYCRCSHGYTGIRCQHVVLV 86 (139)
T ss_pred cccCChhhCCEeECC-EEEee---ccCCCceeECCCCcccccccceeee
Confidence 3456544 478886 89744 3457789999999999999987643
No 30
>PHA02887 EGF-like protein; Provisional
Probab=95.62 E-value=0.017 Score=37.18 Aligned_cols=40 Identities=30% Similarity=0.769 Sum_probs=29.9
Q ss_pred CCCCCCC--CCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcC
Q psy11060 84 LTGCVGP--DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKI 127 (155)
Q Consensus 84 ~~~C~~~--~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~ 127 (155)
..+|... +.|.+ |.|... .......|.|+.||+|.+|+.+
T Consensus 83 f~pC~~eyk~YCiH-G~C~yI---~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 83 FEKCKNDFNDFCIN-GECMNI---IDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ccccChHhhCEeeC-CEEEcc---ccCCCceeECCCCcccCCCCcc
Confidence 3456554 46885 599854 3456789999999999999865
No 31
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.14 E-value=0.043 Score=27.13 Aligned_cols=26 Identities=42% Similarity=0.925 Sum_probs=21.5
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCCCCCC
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 124 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C 124 (155)
.|.++++|. .. ...|.|.+||+|..|
T Consensus 7 ~C~~~G~C~-----~~--~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCV-----SP--CGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEe-----CC--CCEEECCCCCcCCCC
Confidence 588899998 22 578999999999876
No 32
>KOG3514|consensus
Probab=94.96 E-value=0.044 Score=47.58 Aligned_cols=64 Identities=30% Similarity=0.717 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCeeecCccCCCCCCeEeeCC-CCCCCCCCCcCc-ccccCCCceEeecCCCCCc---ceEEEEeC
Q psy11060 86 GCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKIT-TMSFSGGSHIMLNTTREEG---YDISFILH 155 (155)
Q Consensus 86 ~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~-~g~~g~~C~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 155 (155)
.|.++ ||+|++.|. .....+.|.|. .+|.|..|+... ..++.|.-++.+.++.... -+|+++||
T Consensus 625 ~C~~n-PC~N~g~C~-----egwNrfiCDCs~T~~~G~~CerE~t~ls~nGs~~m~i~L~~~~~tq~E~v~iRF~ 693 (1591)
T KOG3514|consen 625 ICESN-PCQNGGKCS-----EGWNRFICDCSGTGFEGRTCEREATALSYNGSMSMKIVLPHTMHTQAEDVSIRFR 693 (1591)
T ss_pred ccCCC-cccCCCCcc-----ccccccccccccCcccCccccceeeeEEEcCeeeEEEEecccceeecceEEEEEE
Confidence 68888 999999998 78899999995 789999999865 4468888888777775443 34778775
No 33
>KOG4260|consensus
Probab=94.91 E-value=0.02 Score=42.37 Aligned_cols=71 Identities=21% Similarity=0.550 Sum_probs=49.0
Q ss_pred EcCCCCc--------cCCCC--CCCCCCC-eeEeCCCCeeeeCCCCCCCC--CceecCCCCCCCCCCCCCCeeecCccCC
Q psy11060 40 IIRPLYS--------LCPCA--YSPCKHG-SCVDKRAGYFCDCPPTYGGK--NCSVELTGCVGPDTCLNGGTCKPYLVDE 106 (155)
Q Consensus 40 ~C~~g~~--------~~~C~--~~~c~~~-~C~~~~~~~~c~C~~g~~g~--~c~~~~~~C~~~~~c~~~~~C~~~~~~~ 106 (155)
+|..||. +|+|. +.||... .|++..++|.|...+||.+. .|+...+.|... ...|+ +
T Consensus 221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~C~~~~d~~~~k-----n~~c~-----n 290 (350)
T KOG4260|consen 221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDECQFCADVCASK-----NRPCM-----N 290 (350)
T ss_pred hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccCChHHhhhhhhhcccC-----CCCcc-----c
Confidence 5788887 56674 3567654 99999999999999998642 233222333322 33577 7
Q ss_pred CCCCeEeeCCCCCC
Q psy11060 107 TQHRFNCTCPSGYH 120 (155)
Q Consensus 107 ~~~~~~C~C~~g~~ 120 (155)
+.+.|.|.|..++.
T Consensus 291 i~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 291 IDGQYRCVCFSGLI 304 (350)
T ss_pred CCccEEEEecccce
Confidence 88899999988765
No 34
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=94.54 E-value=0.026 Score=28.71 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=10.9
Q ss_pred eeEEcCCceEEEcCCCCc
Q psy11060 29 NVIMLKSDYRLIIRPLYS 46 (155)
Q Consensus 29 ~c~~~~~~~~C~C~~g~~ 46 (155)
.|++..++|+|.|+.||.
T Consensus 11 ~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp EEEEETTSEEEE-STTEE
T ss_pred CCccCCCceEeECCCCCE
Confidence 356666666666666665
No 35
>KOG0994|consensus
Probab=93.67 E-value=0.12 Score=45.43 Aligned_cols=67 Identities=22% Similarity=0.463 Sum_probs=48.8
Q ss_pred CCCCceecCCCcceeEEcCCceEE-EcCCCCccCC-------CCCCCCCCC---------eeE--eCCCCeeeeCCCCCC
Q psy11060 16 HGKQFSIGTNSVLNVIMLKSDYRL-IIRPLYSLCP-------CAYSPCKHG---------SCV--DKRAGYFCDCPPTYG 76 (155)
Q Consensus 16 ~~~~~~~~~~~~~~c~~~~~~~~C-~C~~g~~~~~-------C~~~~c~~~---------~C~--~~~~~~~c~C~~g~~ 76 (155)
|-..|...+..|.+|.+.++++.| .|..||.+|+ |.+-||+.+ .|. .......|.|.+||.
T Consensus 864 HA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~ 943 (1758)
T KOG0994|consen 864 HADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYS 943 (1758)
T ss_pred cccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccchhccccccccccccceeeecccCcc
Confidence 345677788889999999999999 7999998544 444455432 243 234456899999999
Q ss_pred CCCcee
Q psy11060 77 GKNCSV 82 (155)
Q Consensus 77 g~~c~~ 82 (155)
|.+|+.
T Consensus 944 G~RCe~ 949 (1758)
T KOG0994|consen 944 GSRCEI 949 (1758)
T ss_pred ccchhh
Confidence 999863
No 36
>smart00051 DSL delta serrate ligand.
Probab=93.40 E-value=0.15 Score=29.35 Aligned_cols=47 Identities=28% Similarity=0.549 Sum_probs=30.3
Q ss_pred eeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCC
Q psy11060 67 YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 124 (155)
Q Consensus 67 ~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C 124 (155)
+.-.|.+.|.|..|.. .|...+-+..+..|. . ...+.|.+||+|..|
T Consensus 17 ~rv~C~~~~yG~~C~~---~C~~~~d~~~~~~Cd------~--~G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCDENYYGEGCNK---FCRPRDDFFGHYTCD------E--NGNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCCCCCcCCccCC---EeCcCccccCCccCC------c--CCCEecCCCCcCCCC
Confidence 3556888898888852 354322234455664 1 245789999999876
No 37
>KOG1226|consensus
Probab=91.45 E-value=0.89 Score=38.47 Aligned_cols=55 Identities=33% Similarity=0.812 Sum_probs=37.2
Q ss_pred eeeCCCCCCCCCcee--cCCCCCCC--CCCCCCCeeecCccCCCCCCeEeeCCCC-CCCCCCCcCcccc
Q psy11060 68 FCDCPPTYGGKNCSV--ELTGCVGP--DTCLNGGTCKPYLVDETQHRFNCTCPSG-YHGKICEKITTMS 131 (155)
Q Consensus 68 ~c~C~~g~~g~~c~~--~~~~C~~~--~~c~~~~~C~~~~~~~~~~~~~C~C~~g-~~g~~C~~~~~~~ 131 (155)
.|.|.+||+|..|.- +.+.|.+. ..|...|.|. -..|.|... |.|..|+.-..+.
T Consensus 567 ~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~---------Cg~C~C~~~~~sG~~CE~cptc~ 626 (783)
T KOG1226|consen 567 RCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCE---------CGRCKCTDPPYSGEFCEKCPTCP 626 (783)
T ss_pred cEEcCCCCccCCCCCCCCCccccCCCCceeCCCceee---------CCceEcCCCCcCcchhhcCCCCC
Confidence 788999999998752 33455543 2466666665 346777655 8999988765443
No 38
>KOG0994|consensus
Probab=91.34 E-value=0.44 Score=42.16 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=25.1
Q ss_pred eeccCCCCCceecCCCcceeEEcCCceEE-EcCCCCc
Q psy11060 11 TLDLLHGKQFSIGTNSVLNVIMLKSDYRL-IIRPLYS 46 (155)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~C-~C~~g~~ 46 (155)
+||+-....|...+..|..|.-.+.+.+| .|..||.
T Consensus 972 NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~ 1008 (1758)
T KOG0994|consen 972 NIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFY 1008 (1758)
T ss_pred CcCccCCCccchhhchhhhhhhcccccchhhccccch
Confidence 45666666777778888877666666666 5777775
No 39
>KOG1836|consensus
Probab=87.27 E-value=2.2 Score=39.82 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=45.8
Q ss_pred CCceecCCCcceeEEcCCceEE-EcCCCCcc-------CCCCCCCCCCC-eeEeC--CCCeeee-CCCCCCCCCceec
Q psy11060 18 KQFSIGTNSVLNVIMLKSDYRL-IIRPLYSL-------CPCAYSPCKHG-SCVDK--RAGYFCD-CPPTYGGKNCSVE 83 (155)
Q Consensus 18 ~~~~~~~~~~~~c~~~~~~~~C-~C~~g~~~-------~~C~~~~c~~~-~C~~~--~~~~~c~-C~~g~~g~~c~~~ 83 (155)
..|...+..|. |.....+-.| +|..||.+ +.|..-+|.++ .|... .....|. |+++|+|++|+..
T Consensus 738 ~~Cd~~tG~C~-C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c 814 (1705)
T KOG1836|consen 738 NICDPRTGQCK-CKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEEC 814 (1705)
T ss_pred ccccCCCCcee-cccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccC
Confidence 45666666666 7777777777 79999872 22666667775 55543 4567899 9999999999753
No 40
>PHA02887 EGF-like protein; Provisional
Probab=87.24 E-value=0.68 Score=29.92 Aligned_cols=28 Identities=32% Similarity=0.775 Sum_probs=21.6
Q ss_pred CCCCCeeE--eCCCCeeeeCCCCCCCCCce
Q psy11060 54 PCKHGSCV--DKRAGYFCDCPPTYGGKNCS 81 (155)
Q Consensus 54 ~c~~~~C~--~~~~~~~c~C~~g~~g~~c~ 81 (155)
-|.+|+|. .......|.|..||.|.+|+
T Consensus 93 YCiHG~C~yI~dL~epsCrC~~GYtG~RCE 122 (126)
T PHA02887 93 FCINGECMNIIDLDEKFCICNKGYTGIRCD 122 (126)
T ss_pred EeeCCEEEccccCCCceeECCCCcccCCCC
Confidence 36666665 33566899999999999997
No 41
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=87.19 E-value=0.89 Score=32.75 Aligned_cols=37 Identities=30% Similarity=0.648 Sum_probs=27.2
Q ss_pred CCCceecCCCCCCC-CCCCCCCeeecCccCCCCCCeEeeCCCCCCC
Q psy11060 77 GKNCSVELTGCVGP-DTCLNGGTCKPYLVDETQHRFNCTCPSGYHG 121 (155)
Q Consensus 77 g~~c~~~~~~C~~~-~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g 121 (155)
+..|. +.++|... +.|. ..|. +..++|.|.|++||+.
T Consensus 181 ~~~C~-~~~~C~~~~~~c~--~~C~-----~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 181 GKICV-VPDLCATLSHVCQ--QVCI-----STPGSYLCACTEGYAL 218 (224)
T ss_pred cccCc-CchhhcCCCCCcc--ceEE-----cCCCCEEeECCCCccC
Confidence 45564 56677655 3565 3788 8899999999999974
No 42
>KOG3516|consensus
Probab=86.88 E-value=1 Score=39.97 Aligned_cols=51 Identities=37% Similarity=0.809 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCeeecCccCCCCCCeEeeCC-CCCCCCCCCcCcccccCCCceEeecC
Q psy11060 86 GCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKITTMSFSGGSHIMLNT 142 (155)
Q Consensus 86 ~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~-~g~~g~~C~~~~~~~~~~~~~~~~~~ 142 (155)
-|.+. +|.|+|.|. .....|.|.|. ..|.|..|......-|+..+++.++-
T Consensus 957 hCss~-~C~NGG~Cv-----ery~gytCDCs~Tay~Gp~Cs~eig~~fe~gs~i~y~f 1008 (1306)
T KOG3516|consen 957 HCSSY-PCLNGGHCV-----ERYDGYTCDCSRTAYDGPFCSKEIGVFFERGSSIRYNF 1008 (1306)
T ss_pred ccccc-cccCCCEEE-----EecCceeeccccCcCCCCccccccceEecCCceEEEec
Confidence 36677 999999999 67789999995 66889999988888888888887765
No 43
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=85.19 E-value=0.9 Score=29.87 Aligned_cols=29 Identities=34% Similarity=0.977 Sum_probs=22.4
Q ss_pred CCCCCeeE--eCCCCeeeeCCCCCCCCCcee
Q psy11060 54 PCKHGSCV--DKRAGYFCDCPPTYGGKNCSV 82 (155)
Q Consensus 54 ~c~~~~C~--~~~~~~~c~C~~g~~g~~c~~ 82 (155)
-|.||.|. .....+.|.|..||.|.+|+.
T Consensus 52 YClHG~C~yI~dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 52 YCLHGDCIHARDIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred EeECCEEEeeccCCCceeECCCCcccccccc
Confidence 36667665 335678999999999999974
No 44
>KOG3512|consensus
Probab=82.71 E-value=6 Score=31.97 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=49.7
Q ss_pred CcceeEEcCCceEE-EcCCCCccCC------------CCCCCCCC-C-eeEeCCCCeeeeCCCCCCCCCcee--------
Q psy11060 26 SVLNVIMLKSDYRL-IIRPLYSLCP------------CAYSPCKH-G-SCVDKRAGYFCDCPPTYGGKNCSV-------- 82 (155)
Q Consensus 26 ~~~~c~~~~~~~~C-~C~~g~~~~~------------C~~~~c~~-~-~C~~~~~~~~c~C~~g~~g~~c~~-------- 82 (155)
-|.+|.-.+.+-+| -|..||..|. |.-+|-.. + +|....+ .|.|.+|.+|..|..
T Consensus 360 vClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tG--qCpCkeGvtG~tCnrCa~gyqqs 437 (592)
T KOG3512|consen 360 VCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTG--QCPCKEGVTGLTCNRCAPGYQQS 437 (592)
T ss_pred eEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCC--cccCCCCCcccccccccchhhcc
Confidence 34456444445555 6999987322 22222211 3 6665555 778888888776631
Q ss_pred --cCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcCcccc
Q psy11060 83 --ELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMS 131 (155)
Q Consensus 83 --~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~~~~~ 131 (155)
.+..|..- |-.....+.+. ..+....+.|+.++.+.+++....+.
T Consensus 438 rs~vapcik~-p~~~~~~~~s~---ve~qd~~s~Ck~~~~~~r~n~kkfc~ 484 (592)
T KOG3512|consen 438 RSPVAPCIKI-PTDAPTLGSSG---VEPQDQCSKCKASPGGKRLNQKKFCK 484 (592)
T ss_pred cCCCcCceec-CCCCccccCCC---CcchhccccCCCCCcceeccccccCc
Confidence 11112111 11111111111 12345567888888877776654443
No 45
>KOG3516|consensus
Probab=82.43 E-value=1.2 Score=39.49 Aligned_cols=38 Identities=29% Similarity=0.852 Sum_probs=33.0
Q ss_pred cCCCCCCCCCCC-eeEeCCCCeeeeCC-CCCCCCCceecC
Q psy11060 47 LCPCAYSPCKHG-SCVDKRAGYFCDCP-PTYGGKNCSVEL 84 (155)
Q Consensus 47 ~~~C~~~~c~~~-~C~~~~~~~~c~C~-~g~~g~~c~~~~ 84 (155)
.++|.+++|.++ .|......|.|.|. .||.|..|+..+
T Consensus 545 ~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi 584 (1306)
T KOG3516|consen 545 SDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSI 584 (1306)
T ss_pred ccccCCccccCCCcccccccceeEeccccccccccccCCC
Confidence 677889999997 99988889999998 899999998554
No 46
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=76.77 E-value=2.5 Score=30.44 Aligned_cols=18 Identities=28% Similarity=0.990 Sum_probs=14.1
Q ss_pred eeEeCCCCeeeeCCCCCC
Q psy11060 59 SCVDKRAGYFCDCPPTYG 76 (155)
Q Consensus 59 ~C~~~~~~~~c~C~~g~~ 76 (155)
.|.+..+.|.|.|.+||.
T Consensus 200 ~C~~~~g~~~c~c~~g~~ 217 (224)
T cd01475 200 VCISTPGSYLCACTEGYA 217 (224)
T ss_pred eEEcCCCCEEeECCCCcc
Confidence 677777888888888874
No 47
>KOG1836|consensus
Probab=72.06 E-value=13 Score=35.02 Aligned_cols=41 Identities=34% Similarity=0.749 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCeeecCccCCCCCCeEee-CCCCCCCCCCCcCcccc
Q psy11060 87 CVGPDTCLNGGTCKPYLVDETQHRFNCT-CPSGYHGKICEKITTMS 131 (155)
Q Consensus 87 C~~~~~c~~~~~C~~~~~~~~~~~~~C~-C~~g~~g~~C~~~~~~~ 131 (155)
|..= +|.+++.|... .....+.|. |++||+|.+|+.-+.--
T Consensus 777 C~~C-~Cp~~~~~~~~---~~~~~~iCk~Cp~gytG~rCe~c~dgy 818 (1705)
T KOG1836|consen 777 CQPC-PCPNGGACGQT---PEILEVVCKNCPPGYTGLRCEECADGY 818 (1705)
T ss_pred CccC-CCCCChhhcCc---CcccceecCCCCCCCcccccccCCCcc
Confidence 5544 77777777632 224567897 99999999998754443
No 48
>KOG3514|consensus
Probab=71.06 E-value=8.1 Score=34.52 Aligned_cols=60 Identities=23% Similarity=0.543 Sum_probs=47.5
Q ss_pred CCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCCCcCcc---cccCCCceEeecCCC----CCcceEEEEeC
Q psy11060 91 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITT---MSFSGGSHIMLNTTR----EEGYDISFILH 155 (155)
Q Consensus 91 ~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~ 155 (155)
.+|.+.+.|+ .+..+..|.|...+-|..|++..+ ..|.|..|+++.+-. +.+-+|++.||
T Consensus 216 ~~c~~~g~c~-----s~d~gp~c~c~~~~dgq~cekeK~~~eaTF~G~ef~~YDls~npI~s~~d~itl~Fr 282 (1591)
T KOG3514|consen 216 FVCLNDGECY-----SSDDGPHCDCQFDHDGQNCEKEKNDGEATFGGDEFVGYDLSQNPIRSKKDNITLTFR 282 (1591)
T ss_pred ceeccCCeEe-----cCCCCCccccccccCccccccccCcceEEecCceEEEeeccCCcccccccceEEEEE
Confidence 4789999999 677788999999888999988654 359999999998753 44556888886
No 49
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=69.06 E-value=1.8 Score=30.48 Aligned_cols=67 Identities=19% Similarity=0.528 Sum_probs=34.6
Q ss_pred CCCCCCeeEeCCCCeeeeCCCCCC---CCCceecCCCCCCC----CCCCCCCeeecCccCCCCCCeEeeCCCCCC
Q psy11060 53 SPCKHGSCVDKRAGYFCDCPPTYG---GKNCSVELTGCVGP----DTCLNGGTCKPYLVDETQHRFNCTCPSGYH 120 (155)
Q Consensus 53 ~~c~~~~C~~~~~~~~c~C~~g~~---g~~c~~~~~~C~~~----~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~ 120 (155)
..|.+|...+..+.|.|.|.++|. -..|+. ..+|... .+|..-+.|...........|.|.|.+||+
T Consensus 6 T~CKNG~LiQMSNHfEC~Cnegfvl~~EntCE~-kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~ 79 (197)
T PF06247_consen 6 TICKNGYLIQMSNHFECKCNEGFVLKNENTCEE-KVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYI 79 (197)
T ss_dssp ---BTEEEEEESSEEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEE
T ss_pred ccccCCEEEEccCceEEEcCCCcEEcccccccc-ceecCcccccCccccchhhhhcCCCcccceeEEEecccCce
Confidence 345555555556667777777773 334542 2344331 256666777632211234678999999997
No 50
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=67.83 E-value=2.7 Score=29.63 Aligned_cols=80 Identities=24% Similarity=0.527 Sum_probs=44.9
Q ss_pred CceEEEcCCCCc--c-----CCCCCCCCCCCeeEeC---CCCeeeeCCCCCC---CCCceecC-CCCCCCCCCCCCCeee
Q psy11060 35 SDYRLIIRPLYS--L-----CPCAYSPCKHGSCVDK---RAGYFCDCPPTYG---GKNCSVEL-TGCVGPDTCLNGGTCK 100 (155)
Q Consensus 35 ~~~~C~C~~g~~--~-----~~C~~~~c~~~~C~~~---~~~~~c~C~~g~~---g~~c~~~~-~~C~~~~~c~~~~~C~ 100 (155)
..|.|.|..||. - +.|....|..|.|+.. .....|+|.-|+. ...|..+. ..|.. .|.....|.
T Consensus 68 ~~~~C~C~~gY~~~~~vCvp~~C~~~~Cg~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~L--KCk~nE~CK 145 (197)
T PF06247_consen 68 RAYKCDCINGYILKQGVCVPNKCNNKDCGSGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCSL--KCKENEECK 145 (197)
T ss_dssp TSEEEEE-TTEEESSSSEEEGGGSS---TTEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE----------TTTEEEE
T ss_pred eeEEEecccCceeeCCeEchhhcCceecCCCeEEecCCCCCCceeEeeeceEeccCCcccCCCccceee--ecCCCccee
Confidence 569999999998 2 3344444555577743 3345899987764 33455433 34543 477777898
Q ss_pred cCccCCCCCCeEeeCCCCCCC
Q psy11060 101 PYLVDETQHRFNCTCPSGYHG 121 (155)
Q Consensus 101 ~~~~~~~~~~~~C~C~~g~~g 121 (155)
...+-|.|.|.+++.+
T Consensus 146 -----~~~~~Y~C~~~~~~~~ 161 (197)
T PF06247_consen 146 -----LVDGYYKCVCKEGFPG 161 (197)
T ss_dssp -----EETTEEEEEE-TT-EE
T ss_pred -----eeCcEEEeecCCCCCC
Confidence 5677789999998873
No 51
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=64.10 E-value=3.8 Score=21.89 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=14.9
Q ss_pred CCeEeeCCCCCCCCCCCc
Q psy11060 109 HRFNCTCPSGYHGKICEK 126 (155)
Q Consensus 109 ~~~~C~C~~g~~g~~C~~ 126 (155)
....|.|+++|+|..|+.
T Consensus 16 ~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 16 STGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp TCEEESBSTTEESTTS-E
T ss_pred CCCEEeccccccCCcCcC
Confidence 367899999999999985
No 52
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=63.97 E-value=8.1 Score=20.42 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=14.3
Q ss_pred CeEeeCCCCCCCCCCCc
Q psy11060 110 RFNCTCPSGYHGKICEK 126 (155)
Q Consensus 110 ~~~C~C~~g~~g~~C~~ 126 (155)
+..|.|+++++|..|+.
T Consensus 17 ~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 17 TGQCECKPNVTGRRCDR 33 (46)
T ss_pred CCEEECCCCCCCCCCCc
Confidence 45789999999999973
No 53
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=62.60 E-value=3.6 Score=26.10 Aligned_cols=38 Identities=24% Similarity=0.607 Sum_probs=22.5
Q ss_pred CCCCCCCeeecCccCCCCCCeEeeCCC-------------CCCCCCCCcCc
Q psy11060 91 DTCLNGGTCKPYLVDETQHRFNCTCPS-------------GYHGKICEKIT 128 (155)
Q Consensus 91 ~~c~~~~~C~~~~~~~~~~~~~C~C~~-------------g~~g~~C~~~~ 128 (155)
+.|..+|.|..........-|.|.|.+ .|.|..|+..|
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkD 63 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKD 63 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccccc
Confidence 368888889721000012457888877 45577776654
No 54
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=61.66 E-value=2.8 Score=21.37 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=16.0
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCC
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYH 120 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~ 120 (155)
.|...+.|.. ...++..|.|..||.
T Consensus 6 ~cP~NA~C~~----~~dG~eecrCllgyk 30 (37)
T PF12946_consen 6 KCPANAGCFR----YDDGSEECRCLLGYK 30 (37)
T ss_dssp ---TTEEEEE----ETTSEEEEEE-TTEE
T ss_pred cCCCCcccEE----cCCCCEEEEeeCCcc
Confidence 5666677873 344889999999996
No 55
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=60.66 E-value=9 Score=20.58 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=14.6
Q ss_pred CeEeeCCCCCCCCCCCc
Q psy11060 110 RFNCTCPSGYHGKICEK 126 (155)
Q Consensus 110 ~~~C~C~~g~~g~~C~~ 126 (155)
+..|.|+++++|..|+.
T Consensus 18 ~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 18 TGQCECKPNTTGRRCDR 34 (50)
T ss_pred CCEEeCCCcCCCCCCCC
Confidence 56799999999999973
No 56
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=58.07 E-value=18 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.553 Sum_probs=23.3
Q ss_pred cCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCC
Q psy11060 83 ELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHG 121 (155)
Q Consensus 83 ~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g 121 (155)
..+.|.....|..-+.|. ......|.|.+||.-
T Consensus 76 p~d~Cd~y~~CG~~g~C~------~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 76 PKDQCDVYGFCGPNGICN------SNNSPKCSCLPGFEP 108 (110)
T ss_pred cccCCCCccccCCccEeC------CCCCCceECCCCcCC
Confidence 345676544788888996 234567999999964
No 57
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=53.17 E-value=1.9 Score=24.81 Aligned_cols=47 Identities=32% Similarity=0.600 Sum_probs=18.9
Q ss_pred eeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCCCCCCCC
Q psy11060 67 YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC 124 (155)
Q Consensus 67 ~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g~~g~~C 124 (155)
+...|.+.|.|..|.. .|.+.+--..+-.|. ..| .-.|.+||+|..|
T Consensus 17 ~rv~C~~nyyG~~C~~---~C~~~~d~~ghy~Cd------~~G--~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 17 IRVVCDENYYGPNCSK---FCKPRDDSFGHYTCD------SNG--NKVCLPGWTGPNC 63 (63)
T ss_dssp ------TTEETTTT-E---E---EEETTEEEEE-------SS----EEE-TTEESTTS
T ss_pred EEEECCCCCCCccccC---CcCCCcCCcCCcccC------CCC--CCCCCCCCcCCCC
Confidence 4667888888888863 243220011222453 222 3358899998876
No 58
>KOG3509|consensus
Probab=49.13 E-value=51 Score=29.42 Aligned_cols=67 Identities=31% Similarity=0.628 Sum_probs=41.2
Q ss_pred cCCCCCCCCCCC-eeEeCCCCeeeeCCCCCCCCCceecCCCCCCCCCCCCCCeeecCccCCCCCCeEeeCCCC
Q psy11060 47 LCPCAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSG 118 (155)
Q Consensus 47 ~~~C~~~~c~~~-~C~~~~~~~~c~C~~g~~g~~c~~~~~~C~~~~~c~~~~~C~~~~~~~~~~~~~C~C~~g 118 (155)
++.|...|+.+. .|........|.|+++|.|..|....+.+.....-...++|. ...+...+.|.++
T Consensus 406 g~~c~~~p~~~~g~c~p~~~~~~c~c~~g~~G~~c~d~~~~~~~~~~g~y~~t~~-----~~~~~~~~~c~pg 473 (964)
T KOG3509|consen 406 GDVCWRIPCQHDGPCLQTLEGKQCLCPPGYTGDSCEDCMNGCDRSPNGSYLGTCV-----PIQGKRCEYCGPG 473 (964)
T ss_pred CCccccccCCCCccccccccccceeccccccCchhhccCccccccCCccccceEe-----ccCCCcceeecCC
Confidence 456666777764 777777778999999999988875544454331112233454 2233344566666
No 59
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=49.13 E-value=38 Score=18.06 Aligned_cols=20 Identities=40% Similarity=1.170 Sum_probs=14.6
Q ss_pred CCCCCCeeecCccCCCCCCeEeeCCCCCC
Q psy11060 92 TCLNGGTCKPYLVDETQHRFNCTCPSGYH 120 (155)
Q Consensus 92 ~c~~~~~C~~~~~~~~~~~~~C~C~~g~~ 120 (155)
.|..+..|. ...|.|++||.
T Consensus 27 qC~~~s~C~---------~g~C~C~~g~~ 46 (52)
T PF01683_consen 27 QCIGGSVCV---------NGRCQCPPGYV 46 (52)
T ss_pred CCCCcCEEc---------CCEeECCCCCE
Confidence 455666786 35899999975
No 60
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=33.63 E-value=26 Score=17.43 Aligned_cols=12 Identities=17% Similarity=-0.083 Sum_probs=9.0
Q ss_pred eEEEcCCCCccC
Q psy11060 37 YRLIIRPLYSLC 48 (155)
Q Consensus 37 ~~C~C~~g~~~~ 48 (155)
..|.|+.||..+
T Consensus 18 ~~C~CPeGyIld 29 (34)
T PF09064_consen 18 GQCFCPEGYILD 29 (34)
T ss_pred CceeCCCceEec
Confidence 478888888754
Done!