RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11060
(155 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 69.2 bits (170), Expect = 4e-16
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 48 CPCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C +PC+H G C++ + C C Y G C +++ CV + C N TC +
Sbjct: 8 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV-SNPCQNDATCL-----D 61
Query: 107 TQHRFNCTCPSGYHGKICE 125
F C C GY G CE
Sbjct: 62 QIGEFQCICMPGYEGVHCE 80
Score = 68.0 bits (167), Expect = 1e-15
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C +PC++ +C+D+ + C C P Y G +C V C CL+ G C +
Sbjct: 48 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECA-SSPCLHNGRCL-----DKI 101
Query: 109 HRFNCTCPSGYHGKICE 125
+ F C CP+G+ G +C+
Sbjct: 102 NEFQCECPTGFTGHLCQ 118
Score = 46.8 bits (112), Expect = 1e-07
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCV-GPDTCLNG 96
CA SPC H G C+DK + C+CP + G C V+L + N
Sbjct: 86 CASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 67.0 bits (164), Expect = 3e-15
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 48 CPCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C +PC + G C D Y C C + GKNC ++ T +
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNG-RCKQFCK-----TG 102
Query: 107 TQHRFNCTCPSGYHGKICEK 126
+ C+C +GY +K
Sbjct: 103 ADSKVLCSCTTGYRLAPDQK 122
Score = 48.9 bits (117), Expect = 2e-08
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 67 YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
F + T V+ C P+ CLNGG CK + + + C C G+ GK CE
Sbjct: 31 VFENTEKTNEFWKQYVDGDQCE-PNPCLNGGLCK-----DDINSYECWCQVGFEGKNCEL 84
Query: 127 ITTMSFSGG 135
T + G
Sbjct: 85 DATCNIKNG 93
Score = 42.3 bits (100), Expect = 9e-06
Identities = 7/52 (13%), Positives = 9/52 (17%), Gaps = 2/52 (3%)
Query: 50 CAYSPCKHGSC-VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 100
+ C + C C Y V P C
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAV-PFPCGRVSVSH 139
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 66.9 bits (164), Expect = 4e-15
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C SPC++ G C D Y C C + GKNC + D C E
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-----EE 98
Query: 108 QHRFNCTCPSGYHGKICEK 126
Q+ C+C GY K
Sbjct: 99 QNSVVCSCARGYTLADNGK 117
Score = 56.5 bits (137), Expect = 3e-11
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C C ++ F D T N + C C N G CK +
Sbjct: 11 ECMEETC----SYEEAREVFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCK-----DGL 60
Query: 109 HRFNCTCPSGYHGKICEK 126
+ CTC G+ GK CE
Sbjct: 61 GEYTCTCLEGFEGKNCEL 78
Score = 46.9 bits (112), Expect = 1e-07
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 100
C+ C +++ C C Y + P C +
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG-PYPCGKQTLER 134
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 66.2 bits (162), Expect = 6e-15
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 49 PCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
CA SPC+ GSC D+ Y C C P + G+NC + NGG C+ Y D T
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGG-CEQYCSDHT 106
Query: 108 QHRFNCTCPSGYHGKICEK 126
+ +C C GY
Sbjct: 107 GTKRSCRCHEGYSLLADGV 125
Score = 48.9 bits (117), Expect = 2e-08
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 54 PCKHGSCVDKRAGY-FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 112
CK C + A F D T + C C NGG+CK + +
Sbjct: 16 ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA-SSPCQNGGSCK-----DQLQSYI 69
Query: 113 CTCPSGYHGKICEK 126
C C + G+ CE
Sbjct: 70 CFCLPAFEGRNCET 83
Score = 34.6 bits (80), Expect = 0.004
Identities = 9/55 (16%), Positives = 11/55 (20%), Gaps = 6/55 (10%)
Query: 50 CAYSPCKHGSCVDK-----RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTC 99
++G C C C Y V T V C
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV-EYPCGKIPIL 141
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 64.0 bits (156), Expect = 6e-14
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 49 PCAYSPCKH-GSCVDKRA--GYFCDCPPTYGGKNCSVELTGCVG-----------PDTCL 94
C +PC++ G C+ A + C+CP + NCS + P+ C
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 95 NGGTCKPYLVDETQH--RFNCTCPSGYHGKICE 125
NGGTC+ + C CP G++G C+
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
Score = 62.8 bits (153), Expect = 1e-13
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 36 DYRLIIRPLYSLCPCAYSPCKHG--------SCVDKRAGYFCDCPPTYGGKNCSVELTGC 87
+ S PC +PC +G D GY C CP + G +C + C
Sbjct: 41 EVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINEC 100
Query: 88 VGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
+ C NGG C D ++C CP + G+ C+
Sbjct: 101 E-VEPCKNGGIC----TDLV-ANYSCECPGEFMGRNCQ 132
Score = 45.9 bits (109), Expect = 4e-07
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVG 89
C PCK+G C D A Y C+CP + G+NC + G
Sbjct: 100 CEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHH 140
Score = 37.4 bits (87), Expect = 4e-04
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
C NGG C P L D + F+C CP G+ C
Sbjct: 8 CENGGICLPGLADGS---FSCECPDGFTDPNCSS 38
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 64.0 bits (156), Expect = 1e-13
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C SPC++ G C D Y C C + GKNC + D C E
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH-----EE 98
Query: 108 QHRFNCTCPSGYHGKICEK 126
Q+ C+C GY K
Sbjct: 99 QNSVVCSCARGYTLADNGK 117
Score = 53.6 bits (129), Expect = 1e-09
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C C + + F D T N + C C N G CK +
Sbjct: 11 ECMEETCSYEEARE----VFEDSDKTNEFWNKYKDGDQCE-TSPCQNQGKCK-----DGL 60
Query: 109 HRFNCTCPSGYHGKICEK 126
+ CTC G+ GK CE
Sbjct: 61 GEYTCTCLEGFEGKNCEL 78
Score = 51.3 bits (123), Expect = 7e-09
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C+ C +++ C C Y + P C + +
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG-PYPCGKQTLER-----RKR 137
Query: 109 HRFNCTCPSGYH-GKICE 125
T SG I
Sbjct: 138 SVAQATSSSGEAPDSITW 155
Score = 41.7 bits (98), Expect = 2e-05
Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 1/52 (1%)
Query: 49 PCAYSPCKHGS-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTC 99
P PC + KR+ + + + D N
Sbjct: 121 PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDL 172
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 62.8 bits (153), Expect = 2e-13
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 49 PCAYSPC-KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C P HG C + + C C +GG+ C +L C CLNGGTC +
Sbjct: 98 KCIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTC----SNTG 150
Query: 108 QHRFNCTCPSGYHGKICE 125
++ C+CP GY G CE
Sbjct: 151 PDKYQCSCPEGYSGPNCE 168
Score = 47.0 bits (112), Expect = 2e-07
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 14/77 (18%)
Query: 50 CAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH 109
++ HGS C Y G C+ C D C
Sbjct: 3 GSHHHHHHGSIEG---RSAVTCDDYYYGFGCNKF---CRPRDDFFGHYAC--------DQ 48
Query: 110 RFNCTCPSGYHGKICEK 126
N TC G+ G C +
Sbjct: 49 NGNKTCMEGWMGPECNR 65
Score = 45.4 bits (108), Expect = 8e-07
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 17/79 (21%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C SP HGSC C C + G C C+ P G C
Sbjct: 68 CRQGCSPK-HGSCKL---PGDCRCQYGWQGLYCDK----CI-PHPGCVHGIC-------- 110
Query: 108 QHRFNCTCPSGYHGKICEK 126
+ C C + + G++C+K
Sbjct: 111 NEPWQCLCETNWGGQLCDK 129
Score = 38.9 bits (91), Expect = 1e-04
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 50 CAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH 109
D+ C + G C+ + G+CK
Sbjct: 35 RPRDDFFGHYACDQ--NGNKTCMEGWMGPECNRAICRQ---GCSPKHGSCKLP------- 82
Query: 110 RFNCTCPSGYHGKICE 125
+C C G+ G C+
Sbjct: 83 -GDCRCQYGWQGLYCD 97
Score = 29.3 bits (66), Expect = 0.31
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 50 CAYSPCKH-GSCVDKRAG-YFCDCPPTYGGKNCSV 82
+ PC + G+C + Y C CP Y G NC +
Sbjct: 135 GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 57.0 bits (138), Expect = 1e-11
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCV-GPDTCLNGGTCKPYLVDE 106
PCA C HG+C+D + CDC + G+ C E++ D C E
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCL-----E 70
Query: 107 TQHRFNCTCPSGYHGKICEK 126
C+C GY
Sbjct: 71 EVGWRRCSCAPGYKLGDDLL 90
Score = 35.8 bits (83), Expect = 0.001
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 77 GKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
G C V C GTC + F+C C SG+ G+ C++
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCI-----DGIGSFSCDCRSGWEGRFCQR 50
Score = 33.9 bits (78), Expect = 0.005
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 48 CPCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 100
C+ C+++ C C P Y + ++ V C
Sbjct: 55 LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV-KFPCGRPWKRM 107
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 54.0 bits (130), Expect = 1e-10
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 37 YRLIIRPLYSLCPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNG 96
Y++I R + + +C C SV + C C NG
Sbjct: 2 YQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQ-CHSVPVKSC-SEPRCFNG 59
Query: 97 GTCKPYLVDETQHRFNCTCPSGYHGKICE 125
GTC+ F C CP G+ GK CE
Sbjct: 60 GTCQQ---ALYFSDFVCQCPEGFAGKSCE 85
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 54.7 bits (132), Expect = 1e-09
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
PC PC H GSC D GY C C P Y G NC + C T C+ + +
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT----DGCQHFCLPGQ 62
Query: 108 QHRFNCTCPSGYHGKICEK 126
+ + C+C GY K
Sbjct: 63 E-SYTCSCAQGYRLGEDHK 80
Score = 26.6 bits (59), Expect = 4.0
Identities = 8/46 (17%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTC 93
P C+H C+ + Y C C Y +
Sbjct: 47 HPERTDGCQHF-CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 52.5 bits (126), Expect = 5e-09
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 16/78 (20%)
Query: 49 PCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C G CV FC CPP + G NC TC NGGTC
Sbjct: 181 ALCTPRCMNGGLCVT---PGFCICPPGFYGVNCDK----ANCSTTCFNGGTC-------- 225
Query: 108 QHRFNCTCPSGYHGKICE 125
+ C CP G G+ CE
Sbjct: 226 FYPGKCICPPGLEGEQCE 243
Score = 51.8 bits (124), Expect = 9e-09
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 16/79 (20%)
Query: 49 PCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
+ C G+C C CPP G+ C + P C NGG C
Sbjct: 213 ANCSTTCFNGGTCFY---PGKCICPPGLEGEQCEI----SKCPQPCRNGGKC-------- 257
Query: 108 QHRFNCTCPSGYHGKICEK 126
+ C C GY G +C K
Sbjct: 258 IGKSKCKCSKGYQGDLCSK 276
Score = 49.9 bits (119), Expect = 4e-08
Identities = 21/79 (26%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 49 PCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
PC+ G C+ C C Y G CS + C GTC
Sbjct: 245 SKCPQPCRNGGKCIG---KSKCKCSKGYQGDLCSKPVCEPG----CGAHGTCHEP----- 292
Query: 108 QHRFNCTCPSGYHGKICEK 126
C C G+HG+ C K
Sbjct: 293 ---NKCQCQEGWHGRHCNK 308
Score = 49.9 bits (119), Expect = 4e-08
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 49 PCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C+ G C + C+CP + G +C + C+NGG C
Sbjct: 149 AECPGGCRNGGFCNE---RRICECPDGFHGPHCEK----ALCTPRCMNGGLC-------- 193
Query: 108 QHRFNCTCPSGYHGKICEK 126
C CP G++G C+K
Sbjct: 194 VTPGFCICPPGFYGVNCDK 212
Score = 46.4 bits (110), Expect = 8e-07
Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
A + K C C G C NGG C
Sbjct: 114 DGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAE--CPGG--CRNGGFC-------- 161
Query: 108 QHRFNCTCPSGYHGKICEK 126
R C CP G+HG CEK
Sbjct: 162 NERRICECPDGFHGPHCEK 180
Score = 35.2 bits (81), Expect = 0.005
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGG 97
C HG+C + C C + G++C+ + +
Sbjct: 281 PGC----GAHGTCHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
Score = 28.7 bits (64), Expect = 0.80
Identities = 7/58 (12%), Positives = 11/58 (18%), Gaps = 16/58 (27%)
Query: 69 CDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
C G V + G T + K C++
Sbjct: 107 FPCLGKQDGVAAF-----EVDVIVMNSEGNT-----------ILKTPQNAIFFKTCQQ 148
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 46.0 bits (108), Expect = 1e-06
Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 50 CAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH 109
P GS + G C P+ +V C NGGTC +
Sbjct: 333 YQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNEL---LHCQNGGTC--------HN 381
Query: 110 RFNCTCPSGYHGKICEK 126
C CP+ Y G +CEK
Sbjct: 382 NVRCLCPAAYTGILCEK 398
Score = 34.4 bits (78), Expect = 0.009
Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 4/84 (4%)
Query: 44 LYSLCPCAYSPCKHGS--CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKP 101
+ + C + CV + C+C G +C + G+ P
Sbjct: 288 ISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQ--GRPWSPGSYLP 345
Query: 102 YLVDETQHRFNCTCPSGYHGKICE 125
G + E
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNE 369
Score = 32.1 bits (72), Expect = 0.054
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 19/81 (23%)
Query: 45 YSLCPCAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYL 103
++C C++ G+C + C CP Y G C C G+C
Sbjct: 363 TNVCDNELLHCQNGGTCHN---NVRCLCPAAYTGILCEK----L----RCEEAGSC---- 407
Query: 104 VDETQHRFNCTCPSGYHGKIC 124
P G H
Sbjct: 408 ---GSDSGQGAPPHGTHHHHH 425
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 41.3 bits (98), Expect = 2e-06
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 50 CAYSPCKH-GSCVDKRAGYFCDCPPTYGGKNC 80
C +PC + GSC D Y C CP + GKNC
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37
Score = 35.5 bits (83), Expect = 3e-04
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLNGG+C D+ + C CP G+ GK CE
Sbjct: 11 CLNGGSC----KDDIN-SYECWCPFGFEGKNCE 38
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 44.4 bits (104), Expect = 4e-06
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 61 VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGY 119
VD D PP GG + CLNGG C + C C +G+
Sbjct: 167 VDSGEVKLDDEPPNSGGGSPCEAGEEGE-GGVCLNGGVCS-----VVDDQAVCDCSRTGF 220
Query: 120 HGKICEKITTM---SFSGGSHIML----NTTREEGYDISF 152
GK C + +F G + N + +I+
Sbjct: 221 RGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITL 260
Score = 38.3 bits (88), Expect = 6e-04
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 42 RPLYSLCPCAYSPCKHGS-CVDKRAGYFCDCPPT-YGGKNCSVELTGCV 88
P + C +G C CDC T + GK+CS +
Sbjct: 185 SPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYI 233
Score = 36.4 bits (83), Expect = 0.003
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 49 PCAYSPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELTGC 87
C C + G C+ + G+ CDC T + G C+ T
Sbjct: 1019 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 36.0 bits (82), Expect = 0.004
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 52 YSPCKHGSCVDKRAGYFCDCPPT--YGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH 109
Y+ + Y P T G S GC+ + + L +
Sbjct: 342 YTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCL-KEVVYKNNDVRLELSRLAKQ 400
Query: 110 RFNCTCPSGYHGKICEKITTMS----FSGGSHIML-NTTREEGYDISF 152
G CE + T+ + S I L ++ ISF
Sbjct: 401 GDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISF 448
Score = 35.2 bits (80), Expect = 0.007
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 48 CPCAYSPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 105
PC +PCK+ G C D Y CDC T Y G++C E T +G +
Sbjct: 620 KPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVL-----SYDGSMFMKIQLP 674
Query: 106 ETQHRFNCT 114
H
Sbjct: 675 VVMHTEAED 683
Score = 32.9 bits (74), Expect = 0.039
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 77 GKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKITTMSFSGG 135
+ C T C D+C N G C + F+C C + + G +C T
Sbjct: 1010 ERGCEGPSTTC-QEDSCSNQGVCL-----QQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 1063
Query: 136 SH 137
Sbjct: 1064 GG 1065
Score = 30.6 bits (68), Expect = 0.20
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 80 CSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKIC--EKITTMSFSGGSH 137
CS E + C N G C+ +R+ C C + + T +S+ G
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRD-----GWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF 668
Query: 138 I---MLNTTREEGYDISF 152
+ + E D+S
Sbjct: 669 MKIQLPVVMHTEAEDVSL 686
Score = 30.2 bits (67), Expect = 0.32
Identities = 10/105 (9%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
+ ++ + G + NG +
Sbjct: 763 AMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHL-QSLTFNGMAYIDLCKNGDI 821
Query: 109 HRFNCTCPSGYHGKICEKITTMSFSGGSHIMLNTTR-EEGYDISF 152
G+ I + +T + S++ L T + + F
Sbjct: 822 DYCELNARFGFRNIIADPVTF--KTKSSYVALATLQAYTSMHLFF 864
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 44.3 bits (104), Expect = 4e-06
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 14/79 (17%)
Query: 48 CPCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
CP SPC + SC + GKNCS G + + G TCK
Sbjct: 593 CPGCPSPCGKYISCAEC-----LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE----- 642
Query: 107 TQHRFNCTCPSGYHGKICE 125
R + C Y + +
Sbjct: 643 ---RDSEGCWVAYTLEQQD 658
Score = 38.9 bits (90), Expect = 3e-04
Identities = 18/80 (22%), Positives = 20/80 (25%), Gaps = 17/80 (21%)
Query: 47 LCPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
L P G C C+C Y C E GC P C +C
Sbjct: 561 LNPRRVECSGRGRCRC----NVCECHSGYQLPLCQ-ECPGC--PSPCGKYISCAE----- 608
Query: 107 TQHRFNCTCPSGYHGKICEK 126
G GK C
Sbjct: 609 -----CLKFEKGPFGKNCSA 623
Score = 38.5 bits (89), Expect = 4e-04
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 57 HGSCVDKRAGYFCDCPPTYGGKNCSVELT----GCVGPDTCLNGGTCKPYLVDETQHRFN 112
G C + C C P + G C E T C G C+
Sbjct: 532 RGLCFCGK----CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN---------V 578
Query: 113 CTCPSGYHGKICEK 126
C C SGY +C++
Sbjct: 579 CECHSGYQLPLCQE 592
Score = 33.9 bits (77), Expect = 0.018
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 17/92 (18%)
Query: 48 CPCAYSPCKHGSCVDKRAGY--FCDCPPTYGGKNCSVELTGCVGPD------------TC 93
C C C K C C Y GKNC + G + C
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 484
Query: 94 LNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
G C + + +G+ CE
Sbjct: 485 SGLGDCVC---GQCLCHTSDVPGKLIYGQYCE 513
Score = 30.5 bits (68), Expect = 0.21
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 16/85 (18%)
Query: 48 CPCAYSPCK-HGSCVDKRAGYFCDCPPT------YGGKNCSVELTGCVGPDTCLNGGTCK 100
C G CV + C C + G+ C + C + + GG +
Sbjct: 477 KDNNSIICSGLGDCVCGQ----CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGR 532
Query: 101 PYLVDETQHRFNCTCPSGYHGKICE 125
C C G+ G C+
Sbjct: 533 GLCFCGK-----CRCHPGFEGSACQ 552
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 43.9 bits (103), Expect = 5e-06
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 48 CPCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVE----------LTGCVGPDTCLNG 96
C + C +G C + C CPP + G+ C C G + C +
Sbjct: 198 CNHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255
Query: 97 GTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSFSG 134
C P + C+C +G+ G C + F G
Sbjct: 256 VFCLP-------DPYGCSCATGWKGLQCNEACHPGFYG 286
Score = 40.8 bits (95), Expect = 6e-05
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 14/93 (15%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVEL------TGCVGPDTCLNGGTCKPY 102
C+ Y C C + G C+ C +C NG C
Sbjct: 245 RCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC--- 301
Query: 103 LVDETQHRFNCTCPSGYHGKICEKITTMSFSGG 135
C C G+ G CE+ +
Sbjct: 302 -----DRFQGCLCSPGWQGLQCEREGIPRMTPK 329
Score = 38.9 bits (90), Expect = 3e-04
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 49 PCAYSPCKHGSCVDKRAG---YFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 105
YS G + A C G C+ C+N G C
Sbjct: 164 AGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHL------CTACMNNGVCHE---- 213
Query: 106 ETQHRFNCTCPSGYHGKICEK 126
C CP G+ G+ CEK
Sbjct: 214 ---DTGECICPPGFMGRTCEK 231
Score = 36.6 bits (84), Expect = 0.002
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 50 CAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQH 109
C +G D+ C C P + G C E + P +
Sbjct: 290 KLRCSCNNGEMCDR--FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHI-----EVNSG 342
Query: 110 RFNCTCP-SGYHGKICEKIT 128
+FN C SG+ E++T
Sbjct: 343 KFNPICKASGWPLPTNEEMT 362
Score = 28.1 bits (62), Expect = 1.1
Identities = 8/68 (11%), Positives = 13/68 (19%), Gaps = 3/68 (4%)
Query: 69 CDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
+ P + GG C + G C +
Sbjct: 146 HEVPDILEVHLPHAQPQDAGVYSARYIGGNLFT---SAFTRLIVRRCEAQKWGPECNHLC 202
Query: 129 TMSFSGGS 136
T + G
Sbjct: 203 TACMNNGV 210
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.0 bits (98), Expect = 3e-05
Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 9/72 (12%)
Query: 55 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 114
C C G C+C + E + G C G C C
Sbjct: 457 CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCG---------QCV 507
Query: 115 CPSGYHGKICEK 126
C S GKI K
Sbjct: 508 CHSSDFGKITGK 519
Score = 35.8 bits (82), Expect = 0.003
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 22/87 (25%)
Query: 48 CPCAYSPCK---HGSCVDKRAGYFCDCPPTYGGKNCSVE------LTGCVGPDTCLNGGT 98
C G C+ + C C + GK + C G
Sbjct: 486 CSPREGQPVCSQRGECLCGQ----CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQ 541
Query: 99 CKPYLVDETQHRFNCTCPSGYHGKICE 125
C +C C S + G C
Sbjct: 542 CSCG---------DCLCDSDWTGYYCN 559
Score = 32.8 bits (74), Expect = 0.039
Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 21/104 (20%)
Query: 47 LCPCAYSPCKHGSCVDKRAGYFCDC-PPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 105
+ G C C C P G C PD C C
Sbjct: 568 MSSNGLLCSGRGKCECGS----CVCIQPGSYGDTCE---KCPTCPDACTFKKEC------ 614
Query: 106 ETQHRFNCTCPSGYHGKICEKITTMSFSGGSHIMLNTTREEGYD 149
C G + ++ T + + ++ G D
Sbjct: 615 -------VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKD 651
Score = 30.8 bits (69), Expect = 0.15
Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 10/80 (12%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCS--VELTGCVGPDTCLNGGTCKPYLVD 105
P + + F D +C + C NG
Sbjct: 401 AKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGT------ 454
Query: 106 ETQHRFNCTCPSGYHGKICE 125
C C G+ G CE
Sbjct: 455 --FECGVCRCGPGWLGSQCE 472
Score = 27.4 bits (60), Expect = 2.7
Identities = 7/77 (9%), Positives = 11/77 (14%), Gaps = 23/77 (29%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C + C +C G D +
Sbjct: 602 PTCPDACTFKKEC--------VECKKFDRGALHDENTCNRYCRDEIESV----------- 642
Query: 108 QHRFNCTCPSGYHGKIC 124
+G C
Sbjct: 643 ----KELKDTGKDAVNC 655
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 40.0 bits (93), Expect = 1e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 48 CPCAYSPCKH-GSCVDKRAGYFCDCPPT-YGGKNCSVELTGC 87
C C + G C+ + G+ CDC T + G C+ T
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 227
Score = 35.0 bits (80), Expect = 0.007
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 79 NCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCP-SGYHGKICEKITTMSFSGGSH 137
C T C D+C N G C + F+C C + + G +C T
Sbjct: 180 GCEGPSTTC-QEDSCSNQGVCL-----QQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 35.9 bits (82), Expect = 5e-04
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSFS 133
C+NGG C R+ C C G+ G C + M
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ 54
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 37.6 bits (86), Expect = 5e-04
Identities = 18/80 (22%), Positives = 19/80 (23%), Gaps = 9/80 (11%)
Query: 48 CPCAYSPCKHGSC-VDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C V T P C NGG C
Sbjct: 109 CLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE----- 163
Query: 107 TQHRFNCTCPSGYHGKICEK 126
R C CP G+HG CE
Sbjct: 164 ---RRICECPDGFHGPHCEG 180
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 35.6 bits (82), Expect = 5e-04
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLNGG C E+ + C C GY G C+
Sbjct: 14 CLNGGVCMH---IESLDSYTCNCVIGYSGDRCQ 43
Score = 27.5 bits (61), Expect = 0.44
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 48 CPCAY-SPCKH-GSC--VDKRAGYFCDCPPTYGGKNC 80
CP +Y C + G C ++ Y C+C Y G C
Sbjct: 6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 37.8 bits (87), Expect = 7e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 49 PCAYSPCKH-GSCVDK-RAGYFCDCPPT-YGGKNCSV 82
PC +PC++ G C+ Y CDC T + G+NC+
Sbjct: 3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 49 PCAYSPCKH-GSCVDK-RAGYFCDCPPT-YGGKNCSV 82
PC Y PC+H G CV Y CDC T Y G NC++
Sbjct: 4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 34.4 bits (79), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CL+ G C Y+ + + C C GY G+ C+
Sbjct: 14 CLHDGVCM-YIEALDK--YACNCVVGYIGERCQ 43
Score = 24.0 bits (52), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 48 CPCAY-SPCKH-GSC--VDKRAGYFCDCPPTYGGKNC 80
CP ++ C H G C ++ Y C+C Y G+ C
Sbjct: 6 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 34.5 bits (79), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLN C + ++C C G+ G+ CE
Sbjct: 16 CLNDAHCF-AVKIADLPVYSCECAIGFMGQRCE 47
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 22/93 (23%)
Query: 50 CAYSPCKHGSCVDKRAGYFCDCPP---------------------TYGGKNCSVELTGCV 88
C SPC +G C + + C+C T C + + G
Sbjct: 7 CESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGAT 66
Query: 89 GPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHG 121
C + + T + + C GY
Sbjct: 67 LKSQCCSSLGA-AWGSPCTLCQVDPICGKGYSR 98
Score = 27.7 bits (62), Expect = 1.1
Identities = 15/79 (18%), Positives = 17/79 (21%), Gaps = 13/79 (16%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSV-----ELTGCVGPDTCLNGGTCKPY 102
C S C Y + E C G C
Sbjct: 69 SQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDE---CEVFPGVCKNGLCV-- 123
Query: 103 LVDETQHRFNCTCPSGYHG 121
T+ F C CPSG
Sbjct: 124 ---NTRGSFKCQCPSGMTL 139
Score = 25.0 bits (55), Expect = 9.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 50 CAYSP--CKHGSCVDKRAGYFCDCPPTY----GGKNC 80
C P CK+G CV+ R + C CP G+ C
Sbjct: 110 CEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 36.2 bits (82), Expect = 0.002
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 53 SPCKHGSCVDKRAGYFCDCPPTYGGKNCSV-----ELTGCVGPDTCLNGGTCKPYLVDET 107
+ C +G V + C C + + E C G C
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 108 QHRFNCTCPSGYHG 121
+ + C C GY
Sbjct: 71 VNMYXCGCIEGYTL 84
Score = 31.9 bits (71), Expect = 0.047
Identities = 9/73 (12%), Positives = 15/73 (20%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
C S + + C C G C + +
Sbjct: 98 NCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVE 157
Query: 109 HRFNCTCPSGYHG 121
+ C C G+
Sbjct: 158 GVYXCQCMEGFTF 170
Score = 30.8 bits (68), Expect = 0.14
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 51 AYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHR 110
+ C + Y C C Y + L C + C G C +
Sbjct: 58 EFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXN-CGESGECIVEYLS-EIQS 115
Query: 111 FNCTCPSGYHGKICEK 126
C+C G ++
Sbjct: 116 AGCSCAIGXVPNPEDE 131
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 35.0 bits (81), Expect = 0.002
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 49 PCAYSPCKHGSCVDKRAGYFCDCPPTY-----GGKNCSVELTGCVGPDTCLNGGTCKPYL 103
PC + C++ + Y C C + C + P C
Sbjct: 6 PCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ----- 60
Query: 104 VDETQHRFNCTCPSGYH---GKICE 125
+C CP GY G IC
Sbjct: 61 -------ASCECPEGYILDDGFICT 78
Score = 27.7 bits (62), Expect = 0.78
Identities = 16/81 (19%), Positives = 20/81 (24%), Gaps = 19/81 (23%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C + + D C+CP Y + C D C NGG C
Sbjct: 42 CQMFCNQTACPADCDPNTQASCECPEGYILDDG----FICTDIDECENGGFC-------- 89
Query: 108 QHR-------FNCTCPSGYHG 121
F C C
Sbjct: 90 SGVCHNLPGTFECICGPDSAL 110
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 34.1 bits (79), Expect = 0.003
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 53 SPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 112
CKHG C++ Y C+CP Y CV D C G C F
Sbjct: 12 DVCKHGQCINTDGSYRCECPFGYILAGNE-----CVDTDECSVGNPCGNGTCKNVIGGFE 66
Query: 113 CTCPSGYHG 121
CTC G+
Sbjct: 67 CTCEEGFEP 75
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 35.0 bits (80), Expect = 0.007
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 17/74 (22%)
Query: 55 CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTC-KPYLVDETQHRFNC 113
C++G C C C P + G C C +GG C +P C
Sbjct: 399 CRNGYCTPTGK---CCCSPGWEGDFCRT----AKCEPACRHGGVCVRPN---------KC 442
Query: 114 TCPSGYHGKICEKI 127
C GY G CE++
Sbjct: 443 LCKKGYLGPQCEQV 456
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 34.4 bits (79), Expect = 0.007
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITT 129
+C G C ET + C+C G++G CE +
Sbjct: 124 DMSCSKQGECL-----ETIGNYTCSCYPGFYGPECEYVRD 158
Score = 29.8 bits (67), Expect = 0.21
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 42 RPLYSLC---PCAYSPC-KHGSCVDKRAGYFCDCPPTYGGKNC 80
+ ++LC C C K G C++ Y C C P + G C
Sbjct: 111 KKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 34.0 bits (78), Expect = 0.008
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITT 129
P +C G C E + + C C GY+G C+ +
Sbjct: 124 PWSCSGHGECV-----EIINNYTCNCDVGYYGPQCQFVQV 158
Score = 30.5 bits (69), Expect = 0.12
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 50 CAYSPCKHGSCVDKRAGYFCDCPPTYGGKNC 80
+S HG CV+ Y C+C Y G C
Sbjct: 123 QPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 34.0 bits (78), Expect = 0.009
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 88 VGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKI 127
+C G C ET + + C C G+ G CE+I
Sbjct: 122 CTNTSCSGHGECV-----ETINNYTCKCDPGFSGLKCEQI 156
Score = 33.6 bits (77), Expect = 0.013
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 42 RPLYSLC---PCAYSPC-KHGSCVDKRAGYFCDCPPTYGGKNC 80
+ +LC C + C HG CV+ Y C C P + G C
Sbjct: 111 KKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 31.8 bits (72), Expect = 0.010
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLN C + ++C C G+ G+ CE
Sbjct: 16 CLNDAHCF-AVKIADLPVYSCECAIGFMGQRCE 47
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 34.1 bits (78), Expect = 0.013
Identities = 8/74 (10%), Positives = 16/74 (21%), Gaps = 9/74 (12%)
Query: 48 CPCAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNG---GTCKPYL 103
S G S R C ++ + C+
Sbjct: 267 TRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDF-----LGEELDIVAAKSHEACQKLC 321
Query: 104 VDETQHRFNCTCPS 117
+ + +F P+
Sbjct: 322 TNAVRCQFFTYTPA 335
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 33.2 bits (75), Expect = 0.027
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 49 PCAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C + C R C C G + + C + C G C +
Sbjct: 5 NCNVNNGGCAQKCQMIRGAVQCTCHT---GYRLTEDGRTCQDVNECAEEGYC-SQGCTNS 60
Query: 108 QHRFNCTCPSGYH 120
+ F C C +GY
Sbjct: 61 EGAFQCWCEAGYE 73
Score = 27.0 bits (59), Expect = 2.6
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 2 STFVDGGIRTLDLLHGKQFSIGTNSVLNVIMLKSDYRLIIRPLYSLCPCAYSPCKHGSCV 61
+ + I + + GK I N + + + + + + C C H C+
Sbjct: 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTH-LCL 362
Query: 62 DKRAGYFCDCPPTY---GGKNCS 81
Y C CP + C+
Sbjct: 363 PSGQNYTCACPTGFRKINSHACA 385
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 32.5 bits (73), Expect = 0.038
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 49 PCAYSP--CKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C + C H C D + GY C CP + C D C + TC V+
Sbjct: 2 ECLDNNGGCSHV-CNDLKIGYECLCPDGFQLVA----QRRCEDIDECQDPDTCSQLCVN- 55
Query: 107 TQHRFNCTCPSGYH 120
+ + C C G+
Sbjct: 56 LEGGYKCQCEEGFQ 69
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 31.6 bits (72), Expect = 0.061
Identities = 10/84 (11%), Positives = 17/84 (20%), Gaps = 12/84 (14%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C C G + C V+ +
Sbjct: 47 GNC----YLDIRPRGDNGDTACSNEIGVGVSK----ASCCCSLGKAWGTPCEMCPAVNTS 98
Query: 108 QHRFNCTCPSGYH----GKICEKI 127
+++ C G+ I E I
Sbjct: 99 EYKILCPGGEGFRPNPITVILEDI 122
Score = 30.8 bits (70), Expect = 0.11
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 53 SPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCL--NGGTCKPYLVDETQHR 110
+ C G+CV+ Y CDCPP + GCV + +
Sbjct: 10 TTCISGNCVNTPGSYICDCPPDFELNPTR---VGCVDTRSGNCYLDIRPR-----GDNGD 61
Query: 111 FNCTCPSGYHG 121
C+ G
Sbjct: 62 TACSNEIGVGV 72
Score = 30.8 bits (70), Expect = 0.11
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 50 CAYSPCKHG-SCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNG-GTCKPYLVDET 107
+PC+ + C + + D C G C+ T
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPIT---VILEDIDECQELPGLCQGGKCINT 140
Query: 108 QHRFNCTCPSGYH----GKICE 125
F C CP+GY+ ++C+
Sbjct: 141 FGSFQCRCPTGYYLNEDTRVCD 162
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 30.0 bits (68), Expect = 0.10
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 21/83 (25%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTY-----GGKNCS-----VELTGCVGPDTCLNGG 97
C + C G CV+ + C C Y KNC C N
Sbjct: 6 CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHN-- 63
Query: 98 TCKPYLVDETQHRFNCTCPSGYH 120
T+ + C CP G+
Sbjct: 64 ---------TEGSYRCECPPGHQ 77
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.8 bits (68), Expect = 0.16
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 5/83 (6%)
Query: 41 IRPLYSLCPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNC-SVELTGCVGPDTCLNGGTC 99
+ +Y PC HG C+ C C Y V T G
Sbjct: 185 LDGVYISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKL 240
Query: 100 KPYLVDETQHRFNCTCPSGYHGK 122
P T + C + G+
Sbjct: 241 SPLWYKITGGQVGTGCGTLNDGR 263
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 30.7 bits (69), Expect = 0.17
Identities = 16/80 (20%), Positives = 21/80 (26%), Gaps = 9/80 (11%)
Query: 50 CAYSPCK-HGSCV--DKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C+ + C HG CV P + G L G
Sbjct: 339 CSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPG-----GGPLSLRGALSLEDQAQM 393
Query: 107 TQHRFNCTCPSGYHGKICEK 126
F C C G+ CE+
Sbjct: 394 AVE-FKCRCYPGWQAPWCER 412
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 30.5 bits (68), Expect = 0.19
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 9/90 (10%)
Query: 57 HGSCVDKRAGYFCDCPPTYGGKN--CSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT 114
H C D G+ C C Y G C E + + F T
Sbjct: 18 HAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSS---QVPVVFENT 74
Query: 115 CPSGY----HGKICEKITTMSFSGGSHIML 140
Y HG+ I+T+ + G ++
Sbjct: 75 DLHSYVVMNHGRSYTAISTIPETVGYSLLP 104
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 29.2 bits (66), Expect = 0.20
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 56 KHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTC 115
KH + Y + G +G + CL+ Y+ ++ + + C C
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQ-------GAMGTNECLDNNGGCSYVCNDLKIGYECLC 54
Query: 116 PSGYH 120
P G+
Sbjct: 55 PDGFQ 59
Score = 26.1 bits (58), Expect = 2.9
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTG---CVGPDTCLNGGTCKPYLV 104
C C + C D + GY C CP + +L C D C + TC L
Sbjct: 32 CLDNNGGCSYV-CNDLKIGYECLCPDGF-------QLVAQRRCEDIDECQDPDTC-SQLC 82
Query: 105 DETQHRFNCTCPSGYH----GKICE 125
+ + C C G+ K C+
Sbjct: 83 VNLEGGYKCQCEEGFQLDPHTKACK 107
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 29.4 bits (65), Expect = 0.23
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSF 132
CLNGGTC + C CP + G+ CE + +
Sbjct: 3 CLNGGTC--VSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 40
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 30.4 bits (67), Expect = 0.27
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 12/81 (14%)
Query: 69 CDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
D T+ N G D C G C + +C C + G C++
Sbjct: 520 FDKQQTWAIDNVY---IGDGCLDMCSGHGRC---------VQGSCVCDEQWGGLYCDEPE 567
Query: 129 TMSFSGGSHIMLNTTREEGYD 149
T + + +
Sbjct: 568 TSLPTQLKDNFNRAPSNQNWL 588
Score = 29.6 bits (65), Expect = 0.40
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 41 IRPLYSLCPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 100
I +Y C HGSC++ G C C P Y G C + G
Sbjct: 179 IDNVYIGPQCEEMCYGHGSCIN---GTKCICDPGYSGPTCKISTKNPDFLKDDFEGQLES 235
Query: 101 PYLVDETQHRFNCTCPSGYHGK 122
+ + + + C G
Sbjct: 236 DRFLLMSGGKPSRKCGILSSGN 257
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 29.5 bits (65), Expect = 0.29
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 87 CVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSFSGG 135
D CLNGGTC + C CP + G+ CE + + G
Sbjct: 10 PSNCD-CLNGGTC--VSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEG 55
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 29.7 bits (66), Expect = 0.46
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 20/97 (20%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCD-------CPPTYGGKNC-----------SVELTGCVG 89
C C + ++G D + C G+ C + + GC
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS 440
Query: 90 PDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
G D C C G+ C++
Sbjct: 441 CACNPLGTIPGGNPCDSETGY--CYCKRLVTGQRCDQ 475
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 27.8 bits (61), Expect = 0.62
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
C++G CK Y+ + +C C GYHG+ C ++
Sbjct: 48 CIHG-ECK-YVKELRAP--SCICHPGYHGERCHGLS 79
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 26.7 bits (59), Expect = 0.65
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Query: 64 RAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKI 123
R G+F CP Y C+ G C+ ++V E +C C GY G
Sbjct: 1 RKGHFSRCPKQYKH--------------YCIKG-RCR-FVVAEQTP--SCVCDEGYIGAR 42
Query: 124 CEKIT 128
CE++
Sbjct: 43 CERVD 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 29.1 bits (64), Expect = 0.69
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 48 CPCAYSPCKHGSCVDKRAGY---FCDCPPTYGGKNCS 81
C C+ + + C D + C C P G+ C
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
Score = 26.8 bits (58), Expect = 3.3
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 18/60 (30%)
Query: 66 GYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CDC + G G C+C G G++CE
Sbjct: 452 HTLCDCNCSDTQPQAPHC---SDGQGHLQCG---------------VCSCAPGRLGRLCE 493
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 26.7 bits (59), Expect = 0.81
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
C +G TC+ +LV E + C C SGY G CE
Sbjct: 16 CFHG-TCR-FLVQEDKP--ACVCHSGYVGARCEHAD 47
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 26.2 bits (57), Expect = 1.1
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICE 125
CLNGG + E+ + C C GY G C+
Sbjct: 11 CLNGGVX---MHIESLDSYTCNCVIGYSGDRCQ 40
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 28.1 bits (62), Expect = 1.3
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 52 YSPCKHGSCVDKRAGYFCD-CPPTYGG--------KNCSVELTGCVGPDTCLNG-GTCKP 101
+S K CV+ + G+ C CPP Y G + E C + C + C
Sbjct: 55 FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHK 114
Query: 102 -----YLVDETQHRFNCTCPSGYHG 121
YL + + C C +GY G
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAG 139
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein,
zinc BIN dimer, conformational change, cell adhesion;
HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A*
1e8b_A* 1qo6_A 2fn2_A*
Length = 308
Score = 28.0 bits (61), Expect = 1.5
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 87 CVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYHGK 122
C+ D N E H NCTC G+
Sbjct: 222 CIVDDITYNVNDTFH-KRHEEGHMLNCTCFGQGRGR 256
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 27.1 bits (60), Expect = 1.8
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 17/77 (22%)
Query: 57 HGSCVDKRAGYFCDCPPTYGGKNCSVEL-----TGCV-------GPDTCLNGGTCKPYLV 104
C + Y C C P Y + + C G C + C
Sbjct: 58 FSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN--- 114
Query: 105 DETQHRFNCTCPSGYHG 121
T ++C C G+
Sbjct: 115 --TVGSYSCRCRPGWKP 129
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG
FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 27.2 bits (60), Expect = 2.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 69 CDCPPTYGGKNCSVELTGCV 88
C+C Y G +CS ++ GC
Sbjct: 39 CECNTCYTGPDCSEKIQGCS 58
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 27.4 bits (60), Expect = 2.3
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 14/97 (14%)
Query: 44 LYSLCPCAYSPCK-HGSCV--DKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCK 100
+ C H S ++ C+C G +C + CL +
Sbjct: 246 ISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDC----------EKCLPFFNDR 295
Query: 101 PYLVDETQHRFNC-TCPSGYHGKICEKITTMSFSGGS 136
P+ + C C + C + S G
Sbjct: 296 PWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH 332
>2gh0_A GFR-alpha-3, GDNF family receptor alpha-3; cystine-knot, helix
bundle, hormone-growth factor complex; HET: NAG BMA MAN;
1.92A {Homo sapiens}
Length = 213
Score = 27.1 bits (59), Expect = 2.4
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 48 CPCAYSPCKHGS-CVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDE 106
C C C + + C P C+ E + C+ L G P V
Sbjct: 98 CLELRRLCFSDPLCRSRLVDFQTHCHPMDILGTCATEQSRCLRAYLGLIGTAMTPNFVSN 157
Query: 107 TQHRFN--CTC-PSGYHGKICEKITTM 130
CTC SG + CE +
Sbjct: 158 VNTSVALSCTCRGSGNLQEECEMLEGF 184
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 25.2 bits (55), Expect = 2.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 93 CLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEKIT 128
CL+G C YLVD +Q+ C C GY G CE
Sbjct: 14 CLHG-QCI-YLVDMSQN--YCRCEVGYTGVRCEHFF 45
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 27.1 bits (59), Expect = 3.2
Identities = 10/74 (13%), Positives = 14/74 (18%), Gaps = 10/74 (13%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C + C C C + C+ C+ Y
Sbjct: 173 YRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACV---ACRHYYYAGV 229
Query: 108 QHRFNC--TCPSGY 119
C CP
Sbjct: 230 -----CVPACPPNT 238
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 26.6 bits (59), Expect = 3.5
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 12 LDLLHGKQFSIGTNSVLNVIMLKSDYRLIIRPL 44
LD+ + +V K+ I RPL
Sbjct: 193 LDIYLESHANESVELADSVNRFKTAAYTIARPL 225
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 26.5 bits (57), Expect = 4.3
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 18/109 (16%)
Query: 53 SPCKHGSCVDKRAGYFCDCPPTYGGKNCSVEL---------TGCVGPDTCLNGGTCKPYL 103
PC+ + P +GG CS ++ T CV C C
Sbjct: 21 FPCQDKKYRHRS----LLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQC-KET 75
Query: 104 VDETQHRFNCT----CPSGYHGKICEKITTMSFSGGSHIMLNTTREEGY 148
+ C C G CE + + + + +++
Sbjct: 76 GRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAAL 124
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 24.8 bits (53), Expect = 4.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 50 CAYSPC---KHGSCVDKRAGYFCDCPPTY 75
C+ +PC G+C + +GY C C Y
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 26.1 bits (57), Expect = 4.7
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTY----GGKNCS 81
+P C + G++C C Y + CS
Sbjct: 129 VAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS 166
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 24.3 bits (53), Expect = 4.8
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 54 PCKHGSCVDKRAGYFCDCPPTY----GGKNCSVE 83
C+H C + GYFC C P Y +C E
Sbjct: 21 QCQH-LCHNYVGGYFCSCRPGYELQEDRHSCQAE 53
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 25.3 bits (56), Expect = 4.9
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTY----GGKNC 80
C S C C + + C+CP Y K+C
Sbjct: 6 CSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC 42
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana
glutinosa} PDB: 1vd1_A* 1vd3_A*
Length = 217
Score = 25.8 bits (56), Expect = 5.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 60 CVDKRAGYFCDCPPTYGGKNCS 81
CVDK A F DCP G+ C
Sbjct: 179 CVDKTATDFIDCPIFPHGRGCG 200
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 26.0 bits (56), Expect = 5.9
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 46 SLCPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVD 105
+ C C + C C + P C+ C+ + +D
Sbjct: 178 FVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCV---ACRNFYLD 234
Query: 106 ETQHRFNC--TCPSGYHGKICEKITTMSF 132
C TCP Y+ + SF
Sbjct: 235 GR-----CVETCPPPYYHFQDWRCVNFSF 258
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 26.3 bits (57), Expect = 6.1
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C G C+ C+ + S E G + CL+ ++ ++
Sbjct: 256 EGPNKFKCHSGECITL--DKVCNMARDCR--DWSDEPIKECGTNECLDNNGGCSHVCNDL 311
Query: 108 QHRFNCTCPSGYH 120
+ + C CP G+
Sbjct: 312 KIGYECLCPDGFQ 324
Score = 25.9 bits (56), Expect = 8.2
Identities = 12/77 (15%), Positives = 15/77 (19%), Gaps = 1/77 (1%)
Query: 48 CPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDET 107
C C H C D + GY C CP + D C
Sbjct: 297 CLDNNGGCSH-VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 355
Query: 108 QHRFNCTCPSGYHGKIC 124
+
Sbjct: 356 CQCEEGFQLDPHTKACK 372
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 25.7 bits (57), Expect = 6.2
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 98 TCKPYLVDETQHRFNCTCPSGYHGKICEKITTMSFSGGSH 137
TC Y + + C + K C I +
Sbjct: 127 TCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGD 166
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 26.0 bits (56), Expect = 6.4
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 113 CTCPSGYHGKICE 125
C C G+ G CE
Sbjct: 460 CRCGPGWLGSQCE 472
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 25.9 bits (56), Expect = 6.6
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 68 FCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 112
CD G S ++ C C+ K F+
Sbjct: 5 HCDGRG---GLKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRMFS 46
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 25.7 bits (56), Expect = 7.1
Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 5/45 (11%)
Query: 111 FNCTCPSGYHGKICEKITTMSFSGGSHI---MLNTTREEGYDISF 152
C + S SH+ + + + +
Sbjct: 7 ELCAVDTAP--GYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQL 49
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 25.9 bits (56), Expect = 7.1
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 2 STFVDGGIRTLDLLHGKQFSIGTNSVLNVIMLKSDYRLIIRPLYSLCPCAYSPCKHGSCV 61
+ + I + ++ I +M + + C C H C+
Sbjct: 537 TDWQRRSIERVHKRSAEREVIIDQL--PDLMGLKATNVHRVIGSNPCAEENGGCSH-LCL 593
Query: 62 DKRAGYFCDCPPTY----GGKNCSV 82
+ G C CP + K C V
Sbjct: 594 YRPQGLRCACPIGFELISDMKTCIV 618
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 26.0 bits (57), Expect = 7.3
Identities = 11/74 (14%), Positives = 13/74 (17%), Gaps = 17/74 (22%)
Query: 54 PCKH-GSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFN 112
PC S K D C PD G C +
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVE-----NFCRNPDGDEEGVWC-----------YV 78
Query: 113 CTCPSGYHGKICEK 126
P +
Sbjct: 79 AGKPGDFGYCDLNY 92
Score = 25.6 bits (56), Expect = 9.1
Identities = 6/76 (7%), Positives = 15/76 (19%), Gaps = 5/76 (6%)
Query: 50 CAYSPCK-HGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQ 108
+ C+ + Y P +G + + C G +
Sbjct: 59 LVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNY----CEEAVEEETGDGLDEDSDRAIE 114
Query: 109 HRFNCTCPSGYHGKIC 124
+ +
Sbjct: 115 GATATSEYQTFFNPAT 130
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 25.8 bits (56), Expect = 7.6
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 73 PTYGGKNCSVELTGCVGPDTCLNGGTCKPYLVDETQHRFNCTCPSGYH----GKICEKIT 128
P P NGG L+ + + C CP+G GK C+
Sbjct: 252 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311
Query: 129 T 129
+
Sbjct: 312 S 312
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Length = 106
Score = 25.0 bits (55), Expect = 7.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
Query: 55 CKHGSCVDKRAGYFC--DCPPTYGGKNCSVELTGCVGPDTCLNGGTCKP 101
CK+ CV+ C DC Y G N V + PD C++ C+P
Sbjct: 11 CKYTDCVE-----VCPVDC--FYEGPNFLV-----IHPDECIDCALCEP 47
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR,
hypoxia, cancer, signaling protein; 2.00A {Homo sapiens}
Length = 134
Score = 24.9 bits (54), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 19 QFSIGTNSVLNVIMLKSDYRLIIRPLYS 46
FS S + L + +R+I + LYS
Sbjct: 105 LFSSAN-SPSQSLTLSTGFRVIKKKLYS 131
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 25.4 bits (56), Expect = 8.4
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 13/70 (18%)
Query: 70 DCPPTYGGKNCS----------VELTGCVGPDTCLNGGTCKPYLVDETQHRFNCT---CP 116
C + G C+ G V + C+PY + +H N + C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 183
Query: 117 SGYHGKICEK 126
C K
Sbjct: 184 GEGDTPKCSK 193
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 25.8 bits (56), Expect = 8.6
Identities = 12/90 (13%), Positives = 16/90 (17%), Gaps = 21/90 (23%)
Query: 43 PLYSLCPCAYSPCKHGSCVDKRAGYFCDCPPTYGGKNCSVELTGCVGPDTCLNGGTCKPY 102
P C C+ Y T G C + P+
Sbjct: 150 PEKRYDYCDILECEEECMHCSGENYDGKISKTMSGL-------------ECQAWDSQSPH 196
Query: 103 LVDETQHRFN--------CTCPSGYHGKIC 124
+F C P C
Sbjct: 197 AHGYIPSKFPNKNLKKNYCRNPDRELRPWC 226
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 23.7 bits (51), Expect = 8.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 91 DTCLNGGTCKPYLVDETQHRFNCTCPSGYHGKICEK 126
+ C++G CK Y+ C C Y G+ C +
Sbjct: 18 NFCIHG-ECK-YIEHLEAV--TCKCQQEYFGERCGE 49
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 25.2 bits (55), Expect = 9.5
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 5/29 (17%)
Query: 97 GTCKPYLVDETQHRFNCTCPSGYHGKICE 125
G+ H + P G H ++C
Sbjct: 2 GSSH-----HHHHHSSGLVPRGSHMRLCH 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.471
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,413,566
Number of extensions: 137023
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 305
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)