BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11061
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + + LD E Y A G + + I + D NDN P F
Sbjct: 206 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 265
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGKD----ANLFRIDRSSG 126
+ S+R+ +Q T V ATD D + G +SY I+ NLF I+R +G
Sbjct: 266 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 325
Query: 127 ELFVTRGNFLSRSN--SYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFV 184
+ + G L R Y + V A D G S + + I I +++ P+F TY+ +
Sbjct: 326 VISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTAL 384
Query: 185 VPED 188
VPE+
Sbjct: 385 VPEN 388
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 14 NHFYMKSVSGEI-CIAQDLDFESRSSYEFPVVATDR--GGLSTTAMVRIQITDVNDNEPI 70
N F + +G I I LD E Y V ATD GLS IQITD NDN PI
Sbjct: 316 NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPI 375
Query: 71 FNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV 111
F+P Y + ++ F V + D D GT +++ V
Sbjct: 376 FDPKTYTALVPEN---EIGFEVQRLSVTDLDMPGTPAWQAV 413
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 99 DSDRFGTISYKIVTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
+ DRF + Y I TG+ A+ +FRI+ +G + VTR + Y ++ A+ G
Sbjct: 182 NKDRFNKVYYSI-TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG 240
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
+ + ++ IN+I+ + P F Q + V E V + V + A D
Sbjct: 241 SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 291
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 19 KSVSGEICIAQDLDFESRSSYEFPVVATDRGGLST-----TAMVRIQITDVNDNEPIFNP 73
+S G + A+ LDFE R Y + + S TA V + + DVN+ P F P
Sbjct: 431 ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVP 489
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKD-ANLFRIDRSSGELFVTR 132
V + +D+ ++A D D + +SY I G D A +++ +G VT
Sbjct: 490 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPARWLTVNKDNG--IVTG 545
Query: 133 GNFLSRSNSY 142
L R + Y
Sbjct: 546 NGNLDRESEY 555
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + + LD E Y A G + + I + D NDN P F
Sbjct: 57 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQ 116
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTGKD----ANLFRIDRSSG 126
+ S+R+ +Q T V ATD D + G +SY I+ NLF I+R +G
Sbjct: 117 DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETG 176
Query: 127 ELFVTRGNFLSRSN--SYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFV 184
+ + G L R Y + V A D G S + + I I +++ P+F TY+ +
Sbjct: 177 VISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTAL 235
Query: 185 VPED 188
VPE+
Sbjct: 236 VPEN 239
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 14 NHFYMKSVSGEI-CIAQDLDFESRSSYEFPVVATDR--GGLSTTAMVRIQITDVNDNEPI 70
N F + +G I I LD E Y V ATD GLS IQITD NDN PI
Sbjct: 167 NLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPI 226
Query: 71 FNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV 111
F+P Y + ++ F V + D D GT +++ V
Sbjct: 227 FDPKTYTALVPEN---EIGFEVQRLSVTDLDMPGTPAWQAV 264
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 99 DSDRFGTISYKIVTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
+ DRF + Y I TG+ A+ +FRI+ +G + VTR + Y ++ A+ G
Sbjct: 33 NKDRFNKVYYSI-TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG 91
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
+ + ++ IN+I+ + P F Q + V E V + V + A D
Sbjct: 92 SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 142
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 19 KSVSGEICIAQDLDFESRSSYEFPVVATDRGGLST-----TAMVRIQITDVNDNEPIFNP 73
+S G + A+ LDFE R Y + + S TA V + + DVN+ P F P
Sbjct: 282 ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVP 340
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKD-ANLFRIDRSSGELFVTR 132
V + +D+ ++A D D + +SY I G D A +++ +G VT
Sbjct: 341 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI--GNDPARWLTVNKDNG--IVTG 396
Query: 133 GNFLSRSNSYHIN 145
L R + Y N
Sbjct: 397 NGNLDRESEYVKN 409
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 11/201 (5%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATD---RGGLSTTAMVRIQITDVNDNEPIFN 72
F + ++G+I + LD E ++ Y A D L + I++ D+NDN P F
Sbjct: 48 FQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFL 107
Query: 73 PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVTGKDANLFRIDRSSGELF 129
Y+ ++ + T+ V ATD D +G + Y I+ G+ F I+ + +
Sbjct: 108 NGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIK 165
Query: 130 VTRGNFLSRSNS-YHINVSAMDGGGNK--CSQDAQVNINIINSHMPIPLFQQSTYSFVVP 186
N + Y + + A D GG+ S + + + + + P F QS Y F VP
Sbjct: 166 TALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP 225
Query: 187 EDVFKNSIVGTIKAATSDSGK 207
EDV + +G +KA D G+
Sbjct: 226 EDVVLGTAIGRVKANDQDIGE 246
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 30 DLDFESRSSYEFPVVATD----RGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQ 85
++D E++ Y + A D GGLS T + + +TDVNDN P F Y+ S+ +D+
Sbjct: 170 NMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVV 229
Query: 86 TTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRI 121
TA V A D+D SY I+ G LF I
Sbjct: 230 LGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEI 265
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
GE SR F ++ +G + + Q LD E++S + +D G+ T V IQ+ DVND
Sbjct: 48 GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVND 104
Query: 67 NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
N P F+ Y+V + ++ T +V ATD D G++ Y + F ID + G
Sbjct: 105 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 162
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
+ V + + +Y + V+A D
Sbjct: 163 IVTVIQELDYEVTQAYQLTVNATD 186
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVND 66
F + S G + + Q+LD+E +Y+ V ATD+ LST A + I ITD+ D
Sbjct: 155 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
GE SR F ++ +G + + Q LD E++S + +D G+ T V IQ+ DVND
Sbjct: 49 GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVND 105
Query: 67 NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
N P F+ Y+V + ++ T +V ATD D G++ Y + F ID + G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
+ V + + +Y + V+A D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDV 64
F + S G + + Q+LD+E +Y+ V ATD+ LST A + I ITD+
Sbjct: 156 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
GE SR F ++ +G + + Q LD E++S + +D G+ T V IQ+ DVND
Sbjct: 49 GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVND 105
Query: 67 NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
N P F+ Y+V + ++ T +V ATD D G++ Y + F ID + G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
+ V + + +Y + V+A D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDV 64
F + S G + + Q+LD+E +Y+ V ATD+ LST A + I ITD+
Sbjct: 156 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-RSSYEFPVVAT---DRGGLSTTAMV 57
+ YTL F + SG + +A++LDFE R + + ++ T D GG ST+ +
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310
Query: 58 RIQITDVNDNEPIFNPVEYNV-SLRDDIQTTTAFAVVLATDRDSDRFGTISYKI 110
I++TDVNDN P F +Y ++ +DI T+ V A D DS I Y +
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV 364
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 14 NHFYMKSVSGEICIAQDLDFES---RSSYEFPVVATDRG---GLSTTAMVR--IQITDVN 65
N + +G + + + D+E + +F V+ T+ G G+ T R I + DVN
Sbjct: 46 NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 105
Query: 66 DNEPIF--NPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDR 123
D P F P+ ++ + T + A D D+D I Y IV + F +D
Sbjct: 106 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDE 163
Query: 124 SSGELFVTRG-NFLSRSNSYHINVSAMDGGGN----KCSQDAQVNINIINSHMPIPLFQQ 178
SG + TRG + Y + V A D G + + ++I+ P F
Sbjct: 164 RSG-VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKR-APQFYM 221
Query: 179 STYSFVVPEDVFKNSIVGTIKAAT 202
+Y +PE+ K+S + +IKA +
Sbjct: 222 PSYEAEIPENQKKDSDIISIKAKS 245
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 11/200 (5%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTYSFVV 185
+ V T G +Y + V A D G S A+ I + + + P+F STY V
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQV 230
Query: 186 PEDVFKNSIVGTIKAATSDS 205
PE+ N+ + T+K D+
Sbjct: 231 PENEV-NARIATLKVTDDDA 249
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 8 ESPSRTNHFYMKSVSGEICI-AQDLDFESRSSYEFPVVATD-RG-GLSTTAMVRIQITDV 64
E P + N F + +G I + LD ES +Y V A D +G GLSTTA I + D+
Sbjct: 156 ELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDI 214
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV 111
NDN P+FNP Y + ++ + A + TD D+ T ++K V
Sbjct: 215 NDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAP--NTPAWKAV 258
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 23 GEICIAQDLDFESRSSYEFPVVATDR----GGLSTTAMVRIQITDVNDNEPIFNPVEYNV 78
G + A+ LDFE++ Y V + G L + + PIF P E V
Sbjct: 280 GILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRV 339
Query: 79 SLRDDI---QTTTAFAVVLATDRDSDRF--GTISYKIVTGKDANLFRIDRSSGELFVTRG 133
+ +D Q T++ T R+ D F I+Y+I AN I+ +G +F TR
Sbjct: 340 EVPEDFGVGQEITSY-----TAREPDTFMDQKITYRIWRDT-ANWLEINPETGAIF-TRA 392
Query: 134 NFLSRSNSYHI 144
+ R ++ H+
Sbjct: 393 E-MDREDAEHV 402
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVND 66
GE SR F ++ +G + + Q LD E++S + +D G+ T V IQ+ VND
Sbjct: 49 GEEASR--FFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGGVND 105
Query: 67 NEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSG 126
N P F+ Y+V + ++ T +V ATD D G++ Y + F ID + G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 127 ELFVTRGNFLSRSNSYHINVSAMD 150
+ V + + +Y + V+A D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDV 64
F + S G + + Q+LD+E +Y+ V ATD+ LST A + I ITD+
Sbjct: 156 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 8 ESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG---GLSTTAMVRIQITDV 64
E S F ++ G+I + LD E ++ YE DR L + I+++D+
Sbjct: 38 EGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDI 97
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDR---FGTISYKIVTGKDANLFRI 121
NDN PIF +N S+ + + T+ V A D D T++Y+I+ G + F +
Sbjct: 98 NDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE--YFTV 155
Query: 122 DRSSGELFVTRGNFLSRSNS-YHINVSAMDGGG 153
D SG +F R + S S Y I V A D G
Sbjct: 156 D-DSGVIFTARADLDRESQSAYEIIVKAKDALG 187
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 12 RTNHFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGGL---STTAMVRIQITD 63
+ N ++ SG I A+ DLD ES+S+YE V A D GL S+TA V I++TD
Sbjct: 148 KGNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQIT--DVNDNEPIFNP 73
F + +SG++ + + LD E+ ++Y+ V TD G VR+ I+ D NDN P+F
Sbjct: 50 FRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKE 109
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRD--SDRFGTISYKIV----TGKDANLFRIDRSSGE 127
Y + + T T + A D D S + Y I+ T N+F ID G+
Sbjct: 110 GPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGD 169
Query: 128 LF-VTRGNFLSR----SNSYHINVSAMDGGGN 154
+ V L R + Y + + A D GG+
Sbjct: 170 IVTVVSPVLLDRETMETPKYELVIEAKDMGGH 201
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 106 ISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNIN 165
+S K V +FRI+ SG++ VTR +Y + V D G +++I+
Sbjct: 37 LSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDIS 96
Query: 166 IINSHMPIPLFQQSTY 181
+I+ + P+F++ Y
Sbjct: 97 VIDQNDNRPMFKEGPY 112
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRG---GLSTTAMVRIQITDVNDNEPIFN 72
F + SG I + LD E R+ Y A DR L + +++ D+NDN P F
Sbjct: 49 FVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFL 108
Query: 73 PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVTGKDANLFRIDRSSGELF 129
Y+ ++ + T+ V A+D D +G + Y I+ G+ F ++ +G +
Sbjct: 109 HEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIR 166
Query: 130 VTRGNFLSRSN-SYHINVSAMDGGGN 154
N + YH+ + A D GG+
Sbjct: 167 TALPNMDREAKEEYHVVIQAKDMGGH 192
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 14 NHFYMKSVSGEICIAQDLDFES---RSSYEFPVVATDRG---GLSTTAMVR--IQITDVN 65
N + +G + + + D+E + +F V+ T+ G G+ T R I + DVN
Sbjct: 41 NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 100
Query: 66 DNEPIF--NPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDR 123
D P F P+ ++ + T + A D D+D I Y IV + F +D
Sbjct: 101 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDE 158
Query: 124 SSGELFVTRG-NFLSRSNSYHINVSAMDGGGN----KCSQDAQVNINIINSHMPIPLFQQ 178
SG + TRG + Y + V A D G + + ++I+ P F
Sbjct: 159 RSG-VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKR-APQFYM 216
Query: 179 STYSFVVPEDVFKNSIVGTIKAAT 202
+Y +PE+ K+S + +IKA +
Sbjct: 217 PSYEAEIPENQKKDSDIISIKAKS 240
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-RSSYEFPVVAT---DRGGLSTTAMV 57
+ YTL F + SG + +A++LDFE R + + ++ T D GG ST+ +
Sbjct: 246 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 305
Query: 58 RIQITDVNDN 67
I++TDVNDN
Sbjct: 306 TIRVTDVNDN 315
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 12/194 (6%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
G T F + +SG++ + + LD E + + A D G + + I + D+
Sbjct: 42 GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDA----NL 118
NDN P F +N S+ + + T V A D D G + Y+I++ + N+
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM 161
Query: 119 FRIDRSSGELF-VTRGNFLSRSNSYHINVSAMDGGGNK---CSQDAQVNINIINSHMPIP 174
F I+ +G++ V G + Y + + A D GN S A I + + + P
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPP 221
Query: 175 LFQQSTYSFVVPED 188
F T+ VPE+
Sbjct: 222 EFTAMTFYGEVPEN 235
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 1 MVNY-TLGESPS--RTNHFYMKSVSGEIC-IAQDLDFESRSSYEFPVVATDRGG-----L 51
M+ Y L ++PS N F + + +G+I +A LD E Y + ATD G L
Sbjct: 144 MLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGL 203
Query: 52 STTAMVRIQITDVNDNEPIFNPVE-YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI 110
S TA I +TDVNDN P F + Y + + A V D+ +Y+I
Sbjct: 204 SNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRI 263
Query: 111 VTGKDANLFRI--DRSSGELFVT 131
G F I D +S + VT
Sbjct: 264 SGGDPTGRFAILTDPNSNDGLVT 286
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 100 SDRFGTISYKI-VTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
SDR +S + VTG A+ +F I+ SG+L VT+ +H+ A+D G
Sbjct: 26 SDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING 85
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
N+ + IN+I+ + P F ++ VPE + V T+ A +D
Sbjct: 86 NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS----YEFPVVATDRG--GLSTTA 55
+ YT P+ N + V+G+I LD ES + Y +A+D G +S T
Sbjct: 373 IRYTKLSDPA--NWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 430
Query: 56 MVRIQITDVNDNEPIFNPVE 75
++I + D+NDN P P E
Sbjct: 431 TLQIYLLDINDNAPQVLPQE 450
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 11/159 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITDVNDNEPIFN 72
F + +G+I + LD E + Y A +R + + I+I D+NDNEPIF
Sbjct: 48 FIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFT 107
Query: 73 PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVTGKDANLFRIDRSSGELF 129
Y ++ + T V ATD D +G + Y I+ G+ F ++ +G +
Sbjct: 108 KDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIK 165
Query: 130 VTRGNFLSRSN--SYHINVSAMDGGGNKCSQDAQVNINI 166
N + R N Y + + A D GG +NI
Sbjct: 166 TALLN-MDRENREQYQVVIQAKDMGGQMGGLSGTTTVNI 203
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 15 HFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGG----LSTTAMVRIQITD 63
+F ++S +G I A ++D E+R Y+ + A D GG LS T V I +TD
Sbjct: 154 YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
G T F + +SG++ + + LD E + + A D G + + I + D+
Sbjct: 42 GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDA----NL 118
NDN P F +N S+ + + T V A D D G + Y+IV+ + N+
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 161
Query: 119 FRIDRSSGELF-VTRGNFLSRSNSYHINVSAMDGGGNKC 156
F I+ +G++ V G + Y + + A D GN
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 100 SDRFGTISYKI-VTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
SDR +S + VTG A+ +F I+ SG+L VT+ +H+ A+D G
Sbjct: 26 SDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING 85
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
N+ + IN+I+ + P F ++ VPE + V T+ A +D
Sbjct: 86 NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 112
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 172
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPI 173
+ V T G +Y + V A D G S A+ I + IN + P+
Sbjct: 173 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPV 222
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 8 ESPSRTNHFYMKSVSGEICI-AQDLDFESRSSYEFPVVATD-RG-GLSTTAMVRIQITDV 64
E P + N F + +G I + LD ES +Y V A D +G GLSTTA I + D+
Sbjct: 158 ELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDI 216
Query: 65 NDNEPIFNP 73
NDN P+FNP
Sbjct: 217 NDNAPVFNP 225
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
G T F + +SG++ + + LD E + + A D G + + I + D+
Sbjct: 42 GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTGKDA----NL 118
NDN P F +N S+ + + T V A D D G + Y+I++ + N+
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNM 161
Query: 119 FRIDRSSGELF-VTRGNFLSRSNSYHINVSAMDGGGNKC 156
F I+ +G++ V G + Y + + A D GN
Sbjct: 162 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPT 200
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 100 SDRFGTISYKI-VTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
SDR +S + VTG A+ +F I+ SG+L VT+ +H+ A+D G
Sbjct: 26 SDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING 85
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
N+ + IN+I+ + P F ++ VPE + V T+ A +D
Sbjct: 86 NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + + LD E ++Y V+++ + + I +TD NDN+P F
Sbjct: 51 FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y I++ D N+F I+R++G
Sbjct: 111 EVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTG 170
Query: 127 EL-FVTRGNFLSRSNSYHINVSAMDGGGNKCS 157
+ VT G +Y + V A D G S
Sbjct: 171 VISVVTTGLDRESFPTYTLVVQAADLQGEGLS 202
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 99 DSDRFGTISYKIVTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
+ D+ G + Y I TG+ A+ +F I+R +G L VT R +Y + A+ G
Sbjct: 27 NKDKEGKVFYSI-TGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNG 85
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
N ++ I + + + P F Q + V E + V + A +D
Sbjct: 86 NAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDAD 136
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ ++ + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 50 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 109
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 110 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 169
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 170 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 210
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 112
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 172
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 173 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 213
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 52 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 111
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 112 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 171
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 172 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 212
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 8 ESPSRTNHFYMKSVSGEICI-AQDLDFESRSSYEFPVVATD-RG-GLSTTAMVRIQITDV 64
E P + N F + +G I + LD ES +Y V A D +G GLSTTA I + D+
Sbjct: 157 ELPHK-NMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDI 215
Query: 65 NDN 67
NDN
Sbjct: 216 NDN 218
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y A G + + I +TD NDN P F
Sbjct: 51 FIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD---RFGTISYKIVTG----KDANLFRIDRSSG 126
+ S+ + T+ V ATD D D I+Y IV+ N+F ++R +G
Sbjct: 111 EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Query: 127 ELFV-TRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI 166
+ V T G +Y + V A D G S A+ I +
Sbjct: 171 VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 15/152 (9%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQIT--DVNDNEPIFNP 73
F + +G + + + LD E+ ++Y+ V TD G + V +++ D NDN PIF
Sbjct: 51 FRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFRE 110
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD-------RFGTISYKIVTGKDANLFRIDRSSG 126
Y + + T T + A D D R+ I + N+F ID G
Sbjct: 111 GPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRY-NIRQQTPDKPSPNMFYIDPEKG 169
Query: 127 ELF-VTRGNFLSRSN----SYHINVSAMDGGG 153
++ V L R Y + + A D G
Sbjct: 170 DIVTVVSPALLDRETLENPKYELIIEAQDMAG 201
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 99 DSDRFGTISYKIVTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGG 153
DSDR +++ TGK + FRI+ ++G + VTR +Y + V D G
Sbjct: 27 DSDRPEGSKFRL-TGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG 85
Query: 154 NKCSQDAQVNINIINSHMPIPLFQQSTY 181
+ + +I+ + P+F++ Y
Sbjct: 86 KTLEGPVPLEVIVIDQNDNRPIFREGPY 113
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA--NLFRID 122
NDN P F Y L ++ T + A D D G I Y ++ L R+D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 123 RSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
+SG L V N V A D G + A V +NI + + +P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 2 VNYTLGE--SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRI 59
+ Y G +P+ F + + +G I + + LD E + ++ V+A+D A V I
Sbjct: 49 IRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI 108
Query: 60 QITDVN 65
+TDVN
Sbjct: 109 NVTDVN 114
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISY---KIVTGKDANLFRI 121
NDN P+F + V + ++ T+ + ATD D I Y V LF +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 122 DRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIIN 168
+ ++G + V R + + + V A DG +N+ +N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN 114
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPIF 71
F +GE+ + LD E + A D G + +RI++ D+NDNEP+F
Sbjct: 63 FVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 78 VSLRD--DIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVT 131
V+LR+ D+ A + +D +R I+YK +T +F ++ +GEL VT
Sbjct: 17 VALREGEDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 132 RGNFLSRSNS--YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQ 178
+ L R + + + A+D GN + ++ I +++ + P+F Q
Sbjct: 76 --SILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITDVN 65
F + +SG++ + + LD E+ ++YE V TD G VR+ I+ ++
Sbjct: 50 FRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEF--PVVATDRGGLSTTAMVRIQITDVNDNEPIFNP 73
F ++ +G + + Q LD E+ + Y V+++ + + I +TD NDN P F
Sbjct: 53 FIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQ 112
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSD 101
+ S+ + T+ V ATD D D
Sbjct: 113 EVFEGSVAEGAVPGTSVMKVSATDADDD 140
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 13 TNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVNDNEPI 70
T F + +SG++ + + LD E + + A D G + + I + D+NDN P
Sbjct: 50 TGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPE 109
Query: 71 F 71
F
Sbjct: 110 F 110
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 111 VTGKDAN-----LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNIN 165
VTG A+ +F I+ SG+L VT+ +H+ A+D GN+ + IN
Sbjct: 40 VTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVIN 99
Query: 166 IIN 168
+I+
Sbjct: 100 VID 102
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 16 FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
F + SGE+ + + LD E+ SY+ V TD G + V ++I
Sbjct: 50 FKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEI 95
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 93 VLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGG 152
V+ +DR + K V + +F+I+ +SGE+ VT+ SY + V D
Sbjct: 24 VVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDEN 83
Query: 153 GNKCSQDAQVNINIIN 168
G + I +I+
Sbjct: 84 GKTIEGPVDLEILVID 99
>pdb|1DKN|A Chain A, Crystal Structure Of Escherichia Coli Phytase At Ph 5.0
With Hg2+ Cation Acting As An Intermolecular Bridge
pdb|1DKO|A Chain A, Crystal Structure Of Tungstate Complex Of Escherichia Coli
Phytase At Ph 6.6 With Tungstate Bound At The Active
Site And With Hg2+ Cation Acting As An Intermolecular
Bridge
pdb|1DKM|A Chain A, Crystal Structure Of Escherichia Coli Phytase At Ph 6.6
With Hg2+ Cation Acting As An Intermolecular Bridge
Length = 410
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 22 SGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI-TDVNDNEPIFNPVEYNVSL 80
SG++ I D+D +R + E GL+ + + TD + +P+FNP++ V
Sbjct: 80 SGQVAIIADVDERTRKTGE-----AFAAGLAPDCAITVHTQTDTSSPDPLFNPLKTGVCQ 134
Query: 81 RDDIQTTTAF 90
D+ T A
Sbjct: 135 LDNANVTDAI 144
>pdb|1DKP|A Chain A, Crystal Structure Of Phytate Complex Of Escherichia Coli
Phytase At Ph 6.6. Phytate Is Bound With Its 3-Phosphate
In The Active Site. Hg2+ Cation Acts As An
Intermolecular Bridge
pdb|1DKQ|A Chain A, Crystal Structure Of Phytate Complex Escherichia Coli
Phytase At Ph 5.0. Phytate Is Bound With Its 3-Phosphate
In The Active Site. Hg2+ Cation Acts As An
Intermolecular Bridge
Length = 410
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 22 SGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI-TDVNDNEPIFNPVEYNVSL 80
SG++ I D+D +R + E GL+ + + TD + +P+FNP++ V
Sbjct: 80 SGQVAIIADVDERTRKTGE-----AFAAGLAPDCAITVHTQTDTSSPDPLFNPLKTGVCQ 134
Query: 81 RDDIQTTTAF 90
D+ T A
Sbjct: 135 LDNANVTDAI 144
>pdb|1DKL|A Chain A, Crystal Structure Of Escherichia Coli Phytase At Ph 4.5
(No Ligand Bound)
pdb|1DKL|B Chain B, Crystal Structure Of Escherichia Coli Phytase At Ph 4.5
(No Ligand Bound)
Length = 410
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 22 SGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI-TDVNDNEPIFNPVEYNVSL 80
SG++ I D+D +R + E GL+ + + D + +P+FNP++ V
Sbjct: 80 SGQVAIIADVDERTRKTGE-----AFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQ 134
Query: 81 RDDIQTTTAF 90
D+ T A
Sbjct: 135 LDNANVTDAI 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,899,531
Number of Sequences: 62578
Number of extensions: 231192
Number of successful extensions: 474
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 85
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)