RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11061
(212 letters)
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 136 bits (344), Expect = 2e-39
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
+ Y L F + ++G+I + LD E ++ Y A D L +
Sbjct: 35 IKYIL-SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFI 93
Query: 59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
I++ D+NDN P F Y+ ++ + T+ V ATD D +G + Y I+ G+
Sbjct: 94 IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP 153
Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC--SQDAQVNINI--INS 169
F I+ + + N + R Y + + A D GG+ S + + + +N
Sbjct: 154 --YFSIEPETAIIKTALPN-MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVND 210
Query: 170 HMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
+ P F QS Y F VPEDV + +G +KA D G
Sbjct: 211 N--PPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIG 245
Score = 101 bits (253), Expect = 5e-26
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)
Query: 15 HFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGG----LSTTAMVRIQITDVNDNEP 69
+F ++ + I A ++D E++ Y + A D GG LS T + + +TDVNDN P
Sbjct: 154 YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPP 213
Query: 70 IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRS----S 125
F Y+ S+ +D+ TA V A D+D SY I+ G LF I
Sbjct: 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQD 273
Query: 126 GELFVTRGNFLSR--SNSYHINVSAMDGGGNKC-------SQDAQVNINI 166
G + + + L SY + V A + + A V I +
Sbjct: 274 GVIRLRKP--LDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 77.3 bits (191), Expect = 3e-17
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 13/147 (8%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGEL 128
++N + L + L TD D I Y + +F+I+ +G++
Sbjct: 2 WVWNQM---FVLEEFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGTIFQINDITGDI 57
Query: 129 FVTRGNFLSR--SNSYHINVSAMDGGGNKC-SQDAQVNINI--INSHMPIPLFQQSTYSF 183
+ L R Y + A+D NK ++ I + IN + P F Y
Sbjct: 58 HAIKR--LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPE--FLNGPYHA 113
Query: 184 VVPEDVFKNSIVGTIKAATSDSGKFTE 210
VPE + V + A +D +
Sbjct: 114 TVPEMSILGTSVTNVTATDADDPVYGN 140
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 140 bits (355), Expect = 8e-39
Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 20/221 (9%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
V Y++ G F ++ +G + + + LD E Y A G +
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248
Query: 57 VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG 113
+ I + D NDN P F + S+R+ +Q T V ATD D + +SY I+
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI- 166
NLF I+R +G + G L R Y + V A D G S + + I I
Sbjct: 309 DPEEPIPNLFTINRETGVI-SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 367
Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
N + PI F TY+ +VPE+ V + D
Sbjct: 368 DANDNAPI--FDPKTYTALVPENEI-GFEVQRLSVTDLDMP 405
Score = 125 bits (315), Expect = 2e-33
Identities = 47/212 (22%), Positives = 76/212 (35%), Gaps = 17/212 (8%)
Query: 9 SPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVN 65
N F + +G I + LD E Y V ATD G LS IQITD N
Sbjct: 311 EEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 370
Query: 66 DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGKDANLFRIDRS 124
DN PIF+P Y + ++ + + TD D + + + F I
Sbjct: 371 DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 429
Query: 125 S----GELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNINIINSHMPIPL 175
G L +G L Y + ++ + + A V + + + + P
Sbjct: 430 PESNQGILTTAKG--LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PF 486
Query: 176 FQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
F + V ED+ + + ++ A D +
Sbjct: 487 FVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 518
Score = 112 bits (281), Expect = 6e-29
Identities = 38/221 (17%), Positives = 83/221 (37%), Gaps = 26/221 (11%)
Query: 1 MVNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFPVVATD-----RGGL 51
Y + + F + +S G + A+ LDFE R Y + +
Sbjct: 411 QAVYKIRVNEG--GFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLP 468
Query: 52 STTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV 111
++TA V + + DVN+ P F P V + +D+ ++A D D + +SY I
Sbjct: 469 TSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG 527
Query: 112 TGKDANLFRIDRSSGELFVT----RGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI- 166
A +++ +G + R + ++N+Y + + D G + + + +++
Sbjct: 528 ND-PARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 586
Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
+N + P+ ++ + + +D
Sbjct: 587 DVNDNGPV--PSPRVFTMCDQNPE-----PQVLTISDADIP 620
Score = 103 bits (259), Expect = 5e-26
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 16/193 (8%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRG--GLSTTA 55
++Y +G P+ + +G + +LD ES ++Y ++ TD G + T
Sbjct: 522 LSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 579
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGK 114
+ + + DVNDN P+ +P + + ++ V+ +D D + G
Sbjct: 580 TLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGS 634
Query: 115 DANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIP 174
D S G + + Y I V D N +
Sbjct: 635 DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIK- 693
Query: 175 LFQQSTYSFVVPE 187
Q+
Sbjct: 694 -CQEKLVGGFDLP 705
Score = 88.0 bits (218), Expect = 2e-20
Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 38/219 (17%)
Query: 22 SGEICIAQDLDFESRSSYEFPVVATDRGGLST----------------TAMVRIQITDVN 65
G + + + + + + ST + ++ +
Sbjct: 85 DGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFP 144
Query: 66 DNEPIFNPVE-------YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGK 114
+ + VS + ++ + DRF + Y I
Sbjct: 145 ETHTGLKRKKRDWVIPPIKVSENER---GPFPKRLVQIKSNKDRFNKVYYSITGQGADNP 201
Query: 115 DANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSH 170
+FRI+ +G + VTR L R + Y ++ A+ G+ + ++ IN+ N +
Sbjct: 202 PQGVFRIEWETGWMLVTRP--LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDN 259
Query: 171 MPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
P F Q + V E V + V + A D +
Sbjct: 260 RPK--FTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 296
Score = 70.7 bits (173), Expect = 1e-14
Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 37/193 (19%)
Query: 44 VATDR---------GGLSTTAMVRIQITDVNDNEPIFNPVEYNVSL-RDDIQTTTAFAVV 93
+ + R G L +V DV+ +P F+ EY S+ R +++ V
Sbjct: 1 MGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKV 60
Query: 94 LATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSA----- 148
+D + + G + FR+ G + V R L + + I+
Sbjct: 61 NFSDCTTRKHGLYDV------GDSRFRVL-PDGTVLVKRHVKLHKDTKFTISTWDARGIK 113
Query: 149 -----------MDGGGNKCSQDAQVNINIINSHMPIPLFQQSTY---SFVVPEDVFKNSI 194
G S+ +++ + ++ + V E+ +
Sbjct: 114 HSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN-ERGPF 172
Query: 195 VGTIKAATSDSGK 207
+ S+ +
Sbjct: 173 PKRLVQIKSNKDR 185
Score = 52.2 bits (125), Expect = 3e-08
Identities = 12/156 (7%), Positives = 25/156 (16%), Gaps = 9/156 (5%)
Query: 4 YTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITD 63
+L G + + Y V+ +D +V +
Sbjct: 628 VSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCS 686
Query: 64 VNDNEPIFNPVEYNVSLRDD------IQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA- 116
+L + ++ D
Sbjct: 687 CEGKAIKCQEKLVGGFDLPIILVILGSVLALLILFLLLLLFLKRKKVVKEPLLLPEDDTR 746
Query: 117 -NLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDG 151
N+F G + M
Sbjct: 747 DNIFYYGEEGGGEEDQDYDLSQLHRGLDSRPDIMRN 782
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 138 bits (351), Expect = 1e-38
Identities = 58/222 (26%), Positives = 87/222 (39%), Gaps = 20/222 (9%)
Query: 1 MVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTA 55
V Y++ G F ++ +G + + + LD E Y A G +
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPM 98
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVT 112
+ I + D NDN P F + S+R+ +Q T V ATD D + +SY I+
Sbjct: 99 EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILK 158
Query: 113 G----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI 166
NLF I+R +G + G L R Y + V A D G S + + I I
Sbjct: 159 QDPEEPIPNLFTINRETGVI-SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQI 217
Query: 167 --INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
N + PI F TY+ +VPE+ V + D
Sbjct: 218 TDANDNAPI--FDPKTYTALVPENE-IGFEVQRLSVTDLDMP 256
Score = 121 bits (305), Expect = 2e-32
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 17/212 (8%)
Query: 9 SPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITDVN 65
N F + +G I + LD E Y V ATD G LS IQITD N
Sbjct: 162 EEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 221
Query: 66 DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGKDANLFRI--- 121
DN PIF+P Y + ++ + + TD D + + + F I
Sbjct: 222 DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 280
Query: 122 -DRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNINIINSHMPIPL 175
+ + G L +G L Y + ++ + + A V + + + + P
Sbjct: 281 PESNQGILTTAKG--LDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PF 337
Query: 176 FQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
F + V ED+ + + ++ A D +
Sbjct: 338 FVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 369
Score = 108 bits (273), Expect = 7e-28
Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 20/199 (10%)
Query: 19 KSVSGEICIAQDLDFESRSSYEFPVVATD-----RGGLSTTAMVRIQITDVNDNEPIFNP 73
+S G + A+ LDFE R Y + + ++TA V + + DVN+ P F P
Sbjct: 282 ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVP 340
Query: 74 VEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRG 133
V + +D+ ++A D D + +SY I A +++ +G +
Sbjct: 341 AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND-PARWLTVNKDNGIVTGNGN 399
Query: 134 ----NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPE 187
+ ++N+Y + + D G + + + +++ +N + P+ ++
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV--PSPRVFTMCDQN 457
Query: 188 DVFKNSIVGTIKAATSDSG 206
+ + +D
Sbjct: 458 PE-----PQVLTISDADIP 471
Score = 102 bits (255), Expect = 2e-25
Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 14/178 (7%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESR----SSYEFPVVATDRG--GLSTTA 55
++Y +G P+ + +G + +LD ES ++Y ++ TD G + T
Sbjct: 373 LSYFIGNDPA--RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG 430
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG-TISYKIVTGK 114
+ + + DVNDN P+ +P + + ++ V+ +D D + G
Sbjct: 431 TLILHVLDVNDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGS 485
Query: 115 DANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMP 172
D S G + + Y I V D N +
Sbjct: 486 DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAI 543
Score = 75.4 bits (186), Expect = 3e-16
Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 21/149 (14%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRS 124
PI ++ + DRF + Y I +FRI+
Sbjct: 12 PIKVSENERGPFP---------KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWE 62
Query: 125 SGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQST 180
+G + VTR L R + Y ++ A+ G+ + ++ IN+ N + P F Q
Sbjct: 63 TGWMLVTR--PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPK--FTQDV 118
Query: 181 YSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
+ V E V + V + A D +
Sbjct: 119 FRGSVREGVQPGTQVMAVSATDEDDNIDS 147
Score = 53.1 bits (128), Expect = 1e-08
Identities = 6/68 (8%), Positives = 13/68 (19%), Gaps = 1/68 (1%)
Query: 4 YTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQITD 63
+L G + + Y V+ +D +V +
Sbjct: 479 VSLSHGSDL-TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCS 537
Query: 64 VNDNEPIF 71
Sbjct: 538 CEGKAIKC 545
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 138 bits (350), Expect = 1e-38
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
V Y++ G F ++ +G + + Q LD E+ + Y A G +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 57 VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG 113
+ I +TD NDN P F + S+ + T+ V ATD D D I+Y IV+
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI- 166
N+F ++R +G + V L R +Y + V A D G S A+ I +
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
IN + P+ F STY VPE+ N+ + T+K D+
Sbjct: 213 DINDNAPV--FNPSTYQGQVPENE-VNARIATLKVTDDDAP 250
Score = 109 bits (275), Expect = 4e-28
Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 27/221 (12%)
Query: 2 VNYTLGESPSRTNHFYM----KSVSGEICIAQDLDFESRSSYEFPVVATDRGG-----LS 52
YT+ P F + + G + A+ LDFE++ Y V + +
Sbjct: 257 AVYTVVNDPD--QQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVP 314
Query: 53 TTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVT 112
+TA V + + DVN+ PIF P E V + +D A + D+ I+Y+I
Sbjct: 315 STATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR 373
Query: 113 GKDANLFRIDRSSGELFVTR-----GNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI- 166
AN I+ +G +F ++++Y + A D G + + + +
Sbjct: 374 D-TANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLL 432
Query: 167 -INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
+N + P+ + F I D
Sbjct: 433 DVNDN--APIPEPRNMQFCQRNPQ-----PHIITILDPDLP 466
Score = 103 bits (260), Expect = 4e-26
Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 18/189 (9%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES-----RSSYEFPVVATDRGG--LSTT 54
+ Y + + N + +G I ++D E S+Y ++ATD G + T
Sbjct: 367 ITYRIWRDTA--NWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGT 424
Query: 55 AMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT-ISYKIVTG 113
+ + + DVNDN PI P R+ ++ D D + + ++ G
Sbjct: 425 GTLLLVLLDVNDNAPIPEPRNMQFCQRNP-----QPHIITILDPDLPPNTSPFTAELTHG 479
Query: 114 KDAN-LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMP 172
N + ++ E + + Y I++ D V++ +
Sbjct: 480 ASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDCEGTVN 539
Query: 173 IPLFQQSTY 181
++ +
Sbjct: 540 N--CMKAHH 546
Score = 75.8 bits (187), Expect = 3e-16
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 12/125 (9%)
Query: 93 VLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINV 146
++ + D+ + Y I +F I+R +G L VT+ L R Y +
Sbjct: 21 LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ--PLDREAIAKYILYS 78
Query: 147 SAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
A+ G ++ I + N + P F Q + V E + V + A +D
Sbjct: 79 HAVSSNGEAVEDPMEIVITVTDQNDNRPE--FTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Query: 205 SGKFT 209
T
Sbjct: 137 DDVNT 141
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 137 bits (348), Expect = 3e-38
Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 22/224 (9%)
Query: 1 MVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTA 55
+ Y++ G T F + +SG++ + + LD E + + A D G +
Sbjct: 33 SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPI 92
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTG 113
+ I + D+NDN P F +N S+ + + T V A D D G + Y+I++
Sbjct: 93 DIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQ 152
Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNI 164
N+F I+ +G++ L R Y + + A D GN S A I
Sbjct: 153 APSTPSPNMFTINNETGDIITVAAG-LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVI 211
Query: 165 NI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
+ +N + P F T+ VPE+ + IV + D
Sbjct: 212 TVTDVNDNPPE--FTAMTFYGEVPENRV-DVIVANLTVTDKDQP 252
Score = 125 bits (316), Expect = 7e-34
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 28/220 (12%)
Query: 9 SPSRTNHFYMKSVSGEI-CIAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQIT 62
S N F + + +G+I +A LD E Y + ATD G LS TA I +T
Sbjct: 155 STPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214
Query: 63 DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDR--FGTISYKIVTGKDANLFR 120
DVNDN P F + + + ++ + A + TD+D +Y+I G F
Sbjct: 215 DVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFA 273
Query: 121 IDRSS----GELFVTRGNFLSR--SNSYHINVSAMD------GGGNKCSQDAQVNINI-- 166
I G + V + + + + + V+A + G + A V++ +
Sbjct: 274 ILTDPNSNDGLVTVVKP--IDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVID 331
Query: 167 INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
+N + P F + E + +++ T+ A D
Sbjct: 332 VNEN---PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRY 368
Score = 109 bits (275), Expect = 4e-28
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 22/202 (10%)
Query: 19 KSVSGEICIAQDLDFESRSSYEFPVVATDRG--------GLSTTAMVRIQITDVNDNEPI 70
S G + + + +DFE+ + V A ++ +TA V + + DVN+N P
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PY 337
Query: 71 FNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFV 130
F P + + + T + A D D I Y ++ AN +ID +G++
Sbjct: 338 FAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSD-PANWLKIDPVNGQITT 396
Query: 131 TRG----NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFV 184
+ ++N Y+ A D G S + I + IN + P L
Sbjct: 397 IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVL----PQEAE 452
Query: 185 VPEDVFKNSIVGTIKAATSDSG 206
E NSI I A D
Sbjct: 453 TCETPEPNSIN--ITALDYDID 472
Score = 108 bits (272), Expect = 9e-28
Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 20/194 (10%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFES----RSSYEFPVVATDRG--GLSTTA 55
+ YT P+ N + V+G+I LD ES + Y +A+D G +S T
Sbjct: 373 IRYTKLSDPA--NWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTG 430
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG---TISYKIVT 112
++I + D+NDN P P E + + + A D D D +
Sbjct: 431 TLQIYLLDINDNAPQVLPQEAETCETPEPNSI----NITALDYDIDPNAGPFAFDLPLSP 486
Query: 113 GKDANLFRIDRSSGELFVTRGNFLSRS-NSYHINVSAMDGGGNKCSQDAQVNINI--INS 169
+ I+R +G+ Y + + D G S + + + + +S
Sbjct: 487 VTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDS 546
Query: 170 HMPIPLFQQSTYSF 183
+ +
Sbjct: 547 NGDC--TDVHHHHH 558
Score = 74.3 bits (183), Expect = 7e-16
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 93 VLATDRDSDRFGTISYKIVTGKDA-----NLFRIDRSSGELFVTRGNFLSR--SNSYHIN 145
++ D D+ ++ Y + TG A +F I+ SG+L VT+ L R +H+
Sbjct: 21 LVRIRSDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLR 77
Query: 146 VSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKA 200
A+D GN+ + IN+ +N + P F ++ VPE + V T+ A
Sbjct: 78 AHAVDINGNQVENPIDIVINVIDMNDNRPE--FLHQVWNGSVPEGSKPGTYVMTVTA 132
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 123 bits (311), Expect = 1e-35
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 15/180 (8%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
V Y++ G F ++ +G + + Q LD E+ + Y A G +
Sbjct: 34 VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPME 93
Query: 57 VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG 113
+ I +TD NDN P F + S+ + T+ V ATD D D I+Y IV+
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 114 ----KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
N+F ++R +G + V L R +Y + V A D G S A+ I +
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 212
Score = 79.3 bits (196), Expect = 1e-18
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 76 YNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVT 131
+S ++ + +V + D+ + Y I +F I+R +G L VT
Sbjct: 5 AAISCPENEKGEFPKNLV-QIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 132 RGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPE 187
+ L R Y + A+ G ++ I + N + P F Q + V E
Sbjct: 64 QP--LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPE--FTQEVFEGSVAE 119
Query: 188 DVFKNSIVGTIKAATSDSGKFTE 210
+ V + A +D T
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTY 142
Score = 55.0 bits (133), Expect = 1e-09
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 8 ESPSRTNHFYMKSVSGEICIA-QDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
N F + +G I + LD ES +Y V A D G LSTTA I + D
Sbjct: 155 PELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 124 bits (314), Expect = 7e-35
Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 27/220 (12%)
Query: 9 SPSRTNHFYMKSVSGEICIAQDLDFESRSS------YEFPVVATDRG--GLSTTAMVRIQ 60
N + +G + + + D+E + + V I
Sbjct: 36 KIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIIL 95
Query: 61 ITDVNDNEPIF--NPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANL 118
+ DVND P F P+ ++ + T + A D D+D I Y IV +
Sbjct: 96 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGR 153
Query: 119 FRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGG----NKCSQDAQVNINII---NS 169
F +D SG + Y + V A D G + + ++I+ +
Sbjct: 154 FEVDERSGVVRTRGT--DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRA 211
Query: 170 HMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
P F +Y +PE+ K+S + +IKA + +
Sbjct: 212 ----PQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIR 247
Score = 107 bits (270), Expect = 2e-28
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 9 SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG------LSTTAMVRIQIT 62
F + SG + F+ Y V A D+ G +T R+ I
Sbjct: 147 RDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 206
Query: 63 DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV-TGKDANLFRI 121
P F Y + ++ + + + A I Y + G+ A F I
Sbjct: 207 G-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLKAQGQGAGTFNI 262
Query: 122 DRSSGELFVTRG-NF--LSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
+SG + + + +F L + + Y + V+A + G + + I +
Sbjct: 263 GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VDLTIRVT 310
Score = 67.4 bits (165), Expect = 1e-13
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS---YEFPVVATDRGG-LSTTAMV 57
+ YTL F + SG + +A++LDFE Y V AT+ G ST+ +
Sbjct: 246 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 305
Query: 58 RIQITDVNDN 67
I++TDVNDN
Sbjct: 306 TIRVTDVNDN 315
Score = 67.4 bits (165), Expect = 1e-13
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query: 91 AVVLATDRDSDRFGTISYKIVTGKDANLFRI--------DRSSGELFVTR------GNFL 136
+ T+ D D G +++ D F+I ++G + V +
Sbjct: 7 KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 66
Query: 137 SRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSI 194
+ + I + G K + + +V I + +N P + + VV + N+
Sbjct: 67 KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTP 126
Query: 195 VGTIKAATSDSGK 207
V T++A D+
Sbjct: 127 VFTLQARDPDTDH 139
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 122 bits (309), Expect = 2e-33
Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 29/216 (13%)
Query: 14 NHFYMKSVSGEICIAQDLDFESRSS------YEFPVVATDRG--GLSTTAMVRIQITDVN 65
N + +G + + + D+E + + V I + DVN
Sbjct: 46 NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 105
Query: 66 DNEPIFN--PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT-ISYKIVTGKDANLFRID 122
D P F P+ ++ + T + A D D+ I Y IV + F +D
Sbjct: 106 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDT---DHNIHYFIVRDRTGGRFEVD 162
Query: 123 RSSGELFVTRGNFLSR--SNSYHINVSAMDGGGN----KCSQDAQVNINII---NSHMPI 173
SG + Y + V A D G + + ++I+ +
Sbjct: 163 ERSGVVRTRGT--DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRA---- 216
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFT 209
P F +Y +PE+ K+S + +IKA + +
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIR 252
Score = 122 bits (308), Expect = 2e-33
Identities = 44/218 (20%), Positives = 80/218 (36%), Gaps = 21/218 (9%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG------LSTTA 55
++Y + F + SG + F+ Y V A D+ G +T
Sbjct: 146 IHYFI-VRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTP 204
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV-TGK 114
R+ I P F Y + ++ + + + A I Y + G+
Sbjct: 205 EERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFAD---REIRYTLKAQGQ 260
Query: 115 DANLFRIDRSSGELFVTRG---NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--INS 169
A F I +SG + + + L + + Y + V+A + G + + I + +N
Sbjct: 261 GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VDLTIRVTDVND 319
Query: 170 HMPIPLFQQSTYS-FVVPEDVFKNSIVGTIKAATSDSG 206
+ P F+ Y V ED+ + + +KA SDSG
Sbjct: 320 NAPK--FELPDYQAHNVDEDIPLGTSILRVKAMDSDSG 355
Score = 103 bits (258), Expect = 4e-26
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSS---YEFPVVATDRGG-LSTTAMV 57
+ YTL F + SG + +A++LDFE Y V AT+ G ST+ +
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310
Query: 58 RIQITDVNDNEPIFNPVEYNV-SLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDA 116
I++TDVNDN P F +Y ++ +DI T+ V A D DS I Y +
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD--- 367
Query: 117 NLFRIDRSSGELFVTRG-NFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIIN 168
F +D S+G + + + + + Y V+A D G S A V + N
Sbjct: 368 -HFAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 63.1 bits (154), Expect = 5e-12
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 20/134 (14%)
Query: 91 AVVLATDRDSDRFGTISYKIVTGKDANLFRID--------RSSGELFVTR------GNFL 136
+ T+ D D G +++ D F+I ++G + V +
Sbjct: 12 KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPE 71
Query: 137 SRSNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQS--TYSFVVPEDVFKN 192
+ + I + G K + + +V I + +N P F VV + N
Sbjct: 72 KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPY--FINRPLPMQAVVQLNAPPN 129
Query: 193 SIVGTIKAATSDSG 206
+ V T++A D+
Sbjct: 130 TPVFTLQARDPDTD 143
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 116 bits (294), Expect = 6e-33
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
+ + + + F ++ +G + + Q LD E++S + +D G+ T V IQ+
Sbjct: 42 LVFGV-SGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVIT-RKVNIQV 99
Query: 62 TDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRI 121
DVNDN P F+ Y+V + ++ T +V ATD D G++ Y F I
Sbjct: 100 GDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAI 157
Query: 122 DRSSGELFVTRGNFLSR--SNSYHINVSAMDGGG-NKCSQDAQVNINII 167
D + G + V + L + +Y + V+A D S A + I I
Sbjct: 158 DSARGIVTVIQE--LDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204
Score = 93.0 bits (232), Expect = 7e-24
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 65 NDNEPIFNPVEYNVSL--RDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRID 122
+ P F ++ L +D ++ +LA D D+ + + + + + F ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEASRFFAVE 58
Query: 123 RSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQ 178
+G +++ + L R + + + S D G +VNI + +N + P F
Sbjct: 59 PDTGVVWLRQP--LDRETKSEFTVEFSVSDHQG---VITRKVNIQVGDVNDNAPT--FHN 111
Query: 179 STYSFVVPEDVFKNSIVGTIKAATSDSG 206
YS +PE+ + + + A D G
Sbjct: 112 QPYSVRIPENTPVGTPIFIVNATDPDLG 139
Score = 68.0 bits (167), Expect = 2e-14
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
V Y+ + F + S G + + Q+LD+E +Y+ V ATD+ LST A +
Sbjct: 144 VLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLA 200
Query: 59 IQITDVNDN 67
I ITD+ D
Sbjct: 201 IIITDMQDM 209
Score = 27.6 bits (62), Expect = 2.7
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 174 PLFQQSTY--SFVVPEDVFKNSIVGTIKAATSDSGKFT 209
P F + ++ ED S V + A D+
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLV 43
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 116 bits (292), Expect = 8e-33
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
Y + E S F ++ G+I + LD E ++ YE DR L +
Sbjct: 33 AMYII-EGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFI 91
Query: 59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
I+++D+NDN PIF +N S+ + + T+ V A D D ++Y+I+ G +
Sbjct: 92 IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE 151
Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNK-CSQDAQVNINII 167
F +D S L R ++Y I V A D G S A V I +
Sbjct: 152 --YFTVDDSGVIFTARAD--LDRESQSAYEIIVKAKDALGLTGESSTATVIIRLT 202
Score = 70.8 bits (174), Expect = 2e-15
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 9/124 (7%)
Query: 87 TTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHI 144
+ + S Y I +F++ G+++ L R Y +
Sbjct: 14 DSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFER--LDREKKAEYEL 71
Query: 145 NVSAMDGGGNKC-SQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAA 201
+D N+ ++ I + IN + PI F Q ++ VPE + V + A
Sbjct: 72 TAHIIDRRNNRSLEPPSKFIIKVSDINDNAPI--FVQKIFNGSVPEMSRLGTSVTKVTAE 129
Query: 202 TSDS 205
+D
Sbjct: 130 DADD 133
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 13 TNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVRIQITD 63
+F + DLD ES+S+YE V A D G S+TA V I++TD
Sbjct: 150 NEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 116 bits (293), Expect = 9e-33
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 16/183 (8%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
+ Y L F + SG I + LD E R+ Y A DR L +
Sbjct: 36 IKYIL-SGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI 94
Query: 59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
+++ D+NDN P F Y+ ++ + T+ V A+D D +G + Y I+ G+
Sbjct: 95 VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP 154
Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC--SQDAQVNINI--INS 169
F ++ +G + N + R YH+ + A D GG+ S +V I +
Sbjct: 155 --YFSVEAQTGIIRTALPN-MDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYK 211
Query: 170 HMP 172
Sbjct: 212 DDD 214
Score = 73.1 bits (180), Expect = 3e-16
Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 13/142 (9%)
Query: 70 IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELF 129
++N + + L +D DS G I Y + +F ID SG +
Sbjct: 4 VWNQF---FVIEEYTGPDPVLVGRLHSDIDSGD-GNIKYILSGEGAGTIFVIDDKSGNIH 59
Query: 130 VTRGNFLSR--SNSYHINVSAMDGGGNKC-SQDAQVNINI--INSHMPIPLFQQSTYSFV 184
T+ L R Y + A+D N+ ++ + + IN + P F Y
Sbjct: 60 ATK--TLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPE--FLHEIYHAN 115
Query: 185 VPEDVFKNSIVGTIKAATSDSG 206
VPE + V + A+ +D
Sbjct: 116 VPERSNVGTSVIQVTASDADDP 137
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 116 bits (292), Expect = 1e-32
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 14/176 (7%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
+ Y L + F + +G+I + LD E + Y A +R + +
Sbjct: 35 LKYIL-SGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI 93
Query: 59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTGKD 115
I+I D+NDNEPIF Y ++ + T V ATD D +G + Y I+ G+
Sbjct: 94 IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQP 153
Query: 116 ANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC--SQDAQVNINII 167
F ++ +G + N + R Y + + A D GG S VNI +
Sbjct: 154 --YFSVESETGIIKTALLN-MDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206
Score = 73.1 bits (180), Expect = 2e-16
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 88 TAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHIN 145
+ L +D+D G++ Y + +LF I+ ++G++ T+ L R Y +
Sbjct: 18 YQYVGKLHSDQDRGD-GSLKYILSGDGAGDLFIINENTGDIQATKR--LDREEKPVYILR 74
Query: 146 VSAMDGGGNK-CSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKAAT 202
A++ + +++ I I IN + PI F + Y+ VPE + V + A
Sbjct: 75 AQAVNRRTGRPVEPESEFIIKIHDINDNEPI--FTKDVYTATVPEMADVGTFVVQVTATD 132
Query: 203 SDS 205
+D
Sbjct: 133 ADD 135
Score = 55.8 bits (135), Expect = 6e-10
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 13 TNHFYMKSVSGEICIAQ-DLDFESRSSYEFPVVATDRGG----LSTTAMVRIQITD 63
+F ++S +G I A ++D E+R Y+ + A D GG LS T V I +TD
Sbjct: 152 QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 115 bits (289), Expect = 3e-32
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
+ Y++ G T F + +SG++ + + LD E + + A D G +
Sbjct: 34 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 93
Query: 57 VRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSD--RFGTISYKIVTG- 113
+ I + D+NDN P F +N S+ + + T V A D D G + Y+I++
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 114 ---KDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKC---SQDAQVNIN 165
N+F I+ +G++ L R Y + + A D GN S A I
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAG-LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVIT 212
Query: 166 I 166
+
Sbjct: 213 V 213
Score = 77.8 bits (192), Expect = 6e-18
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 93 VLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINV 146
++ D D+ ++ Y + +F I+ SG+L VT+ L R +H+
Sbjct: 21 LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRA 78
Query: 147 SAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFVVPEDVFKNSIVGTIKA 200
A+D GN+ + IN+ +N + P F ++ VPE + V T+ A
Sbjct: 79 HAVDINGNQVENPIDIVINVIDMNDNRPE--FLHQVWNGSVPEGSKPGTYVMTVTA 132
Score = 51.6 bits (124), Expect = 2e-08
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 14 NHFYMKSVSGEIC-IAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQITD 63
N F + + +G+I +A LD E Y + ATD G LS TA I +TD
Sbjct: 160 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 111 bits (280), Expect = 8e-31
Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 18/185 (9%)
Query: 1 MVNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTA 55
+ L G F + +G + + + LD E+ ++Y+ V TD G L
Sbjct: 33 GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPV 92
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF--GTISYKIVTG 113
+ + + D NDN PIF Y + + T T + A D D + Y I
Sbjct: 93 PLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQ 152
Query: 114 ----KDANLFRIDRSSGELFVTRGNFL-----SRSNSYHINVSAMDGGGNKC--SQDAQV 162
N+F ID G++ L + Y + + A D G + A
Sbjct: 153 TPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATA 212
Query: 163 NINII 167
I I
Sbjct: 213 TIVID 217
Score = 83.2 bits (206), Expect = 5e-20
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGEL 128
PI P D+ V+ +DR ++ K V FRI+ ++G +
Sbjct: 7 PILIPENQRQPFPRDVGK------VVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSV 60
Query: 129 FVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPIPLFQQSTYSFV 184
VTR L R +Y + V D G + + + N + PI F++ Y
Sbjct: 61 SVTR--TLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPI--FREGPYIGH 116
Query: 185 VPEDVFKNSIVGTIKA 200
V E + V + A
Sbjct: 117 VMEGSPTGTTVMRMTA 132
Score = 45.1 bits (107), Expect = 3e-06
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 13 TNHFYMKSVSGEICIAQ---DLDFESR--SSYEFPVVATDRGG----LSTTAMVRIQITD 63
N FY+ G+I LD E+ YE + A D G L+ TA I I D
Sbjct: 159 PNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 88.4 bits (219), Expect = 1e-21
Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 32/193 (16%)
Query: 3 NYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFP----------------VVAT 46
T N ++ +G + + + LD S +
Sbjct: 45 YGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSL 104
Query: 47 DRGGLSTTAMVRIQITDVNDNEPI----------FNPVEYNVSLRDDIQTTTAFAVVLAT 96
G R+ + N + P F + +R++ T L
Sbjct: 105 REGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLP 164
Query: 97 DRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGN 154
+ +++Y+++ G + FR S E+ L R Y + G
Sbjct: 165 VQFLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWA--LDREQREKYELVAVCTVHAGA 221
Query: 155 -KCSQDAQVNINI 166
+ + +
Sbjct: 222 REEVVMVPFPVTV 234
Score = 74.2 bits (182), Expect = 2e-16
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
V Y L E F S E+ LD E R YE V T G
Sbjct: 174 VAYRLLEGEG--LPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFP 231
Query: 59 IQITDVNDNEPIF 71
+ + D +D+ P F
Sbjct: 232 VTVYDEDDSAPEF 244
Score = 65.3 bits (159), Expect = 4e-13
Identities = 22/167 (13%), Positives = 41/167 (24%), Gaps = 31/167 (18%)
Query: 71 FNPVEYNVSLRDDIQTTTAFAVVLATDRDSD--RFGTISYKI-----VTGKDANLFRIDR 123
F+ Y L D T V A + + + + N RI
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 124 SSGELFVTR--------------GNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINI--I 167
+G L++ R F + + +S +C +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 168 NSHMPI--------PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
N+ P F ++ SF + E+ +
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLC 169
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 77.5 bits (192), Expect = 8e-19
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI--VTGKDA 116
+ NDN P F Y L ++ T + A D D G I Y T
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 117 NLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
L R+D +SG L V + R N V A D G + A V +NI
Sbjct: 62 RLLRLDETSGWLSVLHR--IDREEVNQLRFTVMARDRGQPPKTDKATVVLNIK 112
Score = 75.6 bits (187), Expect = 5e-18
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 2 VNYTLGESPSRTNH-FYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVR 58
+ Y G + + SG + + +D E + F V+A DRG + A V
Sbjct: 49 IEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVV 108
Query: 59 IQITDVNDNEP 69
+ I D NDN P
Sbjct: 109 LNIKDENDNVP 119
Score = 32.1 bits (74), Expect = 0.047
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
P F++S Y + E+ + + ++AA D G
Sbjct: 12 PRFEKSVYEADLAENSAPGTPILQLRAADLDVG 44
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 71.7 bits (177), Expect = 1e-16
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 59 IQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI---VTGKD 115
+ NDN P+F + V + ++ T+ + ATD D I Y V
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 116 ANLFRIDRSSGELFVTRG-NFLSRSNSYHINVSAMDGGG 153
LF ++ ++G + V R + + + + V A DG
Sbjct: 62 KRLFALNNTTGLITVQRSLDR-EETAIHKVTVLASDGSS 99
Score = 68.6 bits (169), Expect = 2e-15
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 2 VNYTLGE--SPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRI 59
+ Y G +P+ F + + +G I + + LD E + ++ V+A+D A V I
Sbjct: 49 IRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI 108
Query: 60 QITDVN 65
+TDVN
Sbjct: 109 NVTDVN 114
Score = 30.1 bits (69), Expect = 0.16
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
P+F++ +PE+ + V + A +D G
Sbjct: 12 PVFKEGQVEVHIPENAPVGTSVIQLHATDADIG 44
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 70.8 bits (174), Expect = 2e-16
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
+ Y++ G T F + +SG++ + + LD E + + A D G +
Sbjct: 36 LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 95
Query: 57 VRIQITDVNDNEPIF 71
+ I + D+NDN P F
Sbjct: 96 IVINVIDMNDNRPEF 110
Score = 61.1 bits (149), Expect = 1e-12
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 93 VLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINV 146
++ D+ ++ Y + +F I+ SG+L VT+ L R +H+
Sbjct: 23 LVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP--LDRELIARFHLRA 80
Query: 147 SAMDGGGNKCSQDAQVNINI--INSHMPI 173
A+D GN+ + IN+ +N + P
Sbjct: 81 HAVDINGNQVENPIDIVINVIDMNDNRPE 109
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 70.5 bits (173), Expect = 2e-16
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGEL 128
PI P D+ V+ +DR ++ K V FRI+ ++G +
Sbjct: 7 PILIPENQRQPFPRDVGK------VVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSV 60
Query: 129 FVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
VTR L R +Y + V D G + + +I
Sbjct: 61 SVTRT--LDRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99
Score = 53.5 bits (129), Expect = 6e-10
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
+ L G F + +G + + + LD E+ ++Y+ V TD G L
Sbjct: 34 SKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVP 93
Query: 57 VRIQITD 63
+ + + D
Sbjct: 94 LEVIVID 100
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 70.8 bits (174), Expect = 3e-16
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
+ Y G + F +GE+ + LD E + A D G +
Sbjct: 46 ITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLE 105
Query: 57 VRIQITDVNDNEPIF 71
+RI++ D+NDNEP+F
Sbjct: 106 LRIKVLDINDNEPVF 120
Score = 62.0 bits (151), Expect = 7e-13
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRS 124
P+ ++S ++ I + +D +R I+YK +T +F ++
Sbjct: 16 PVALREGEDLSKKNPIAK-------IHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKD 68
Query: 125 SGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINI--INSHMPI 173
+GEL VT L R + + + A+D GN + ++ I + IN + P+
Sbjct: 69 TGELNVTSI--LDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPV 119
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 65.5 bits (160), Expect = 2e-14
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 93 VLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMD 150
V+ +DR + K V + +F+I+ +SGE+ VT+ L R SY + V D
Sbjct: 24 VVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA--LDREAIPSYQLQVETTD 81
Query: 151 GGGNKCSQDAQVNINII 167
G + I +I
Sbjct: 82 ENGKTIEGPVDLEILVI 98
Score = 52.4 bits (126), Expect = 2e-09
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
L G F + SGE+ + + LD E+ SY+ V TD G +
Sbjct: 33 SKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVD 92
Query: 57 VRIQITD 63
+ I + D
Sbjct: 93 LEILVID 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 61.3 bits (149), Expect = 6e-13
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 93 VLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSR--SNSYHINVSAMD 150
V+ ++ +S K V +FRI+ SG++ VTR L R +Y + V D
Sbjct: 24 VIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRP--LDREAIANYELEVEVTD 81
Query: 151 GGGNKCSQDAQVNINII 167
G +++I++I
Sbjct: 82 LSGKIIDGPVRLDISVI 98
Score = 49.7 bits (119), Expect = 1e-08
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
+ L G F + +SG++ + + LD E+ ++YE V TD G +
Sbjct: 33 AKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVR 92
Query: 57 VRIQITD 63
+ I + D
Sbjct: 93 LDISVID 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 59.7 bits (145), Expect = 4e-12
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRS 124
P+ + V +S ++ + ++ + D+ G + Y I +F I+R
Sbjct: 2 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 125 SGELFVTRGNFLSR--SNSYHINVSAMDGGGNKCSQDAQVNINII 167
+G L VT L R +Y + A+ GN ++ I +
Sbjct: 61 TGWLKVTEP--LDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 103
Score = 50.5 bits (121), Expect = 8e-09
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
V Y++ G F ++ +G + + + LD E ++Y A G +
Sbjct: 38 VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 97
Query: 57 VRIQITD 63
+ I +TD
Sbjct: 98 ILITVTD 104
Score = 25.4 bits (56), Expect = 7.7
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGK 207
PL PE+ K + S+ K
Sbjct: 2 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDK 34
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 53.6 bits (129), Expect = 5e-10
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 70 IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELF 129
++N + L + L TD D I Y + +F+I+ +G++
Sbjct: 3 VWNQMF---VLEEFSGPEPILVGRLHTDLDPGS-KKIKYILSGDGAGTIFQINDITGDIH 58
Query: 130 VTRGNFLSR--SNSYHINVSAMDGGGNK-CSQDAQVNINII 167
+ L R Y + A+D NK ++ I +
Sbjct: 59 AIKR--LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQ 97
Score = 50.9 bits (122), Expect = 6e-09
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
+ Y L F + ++G+I + LD E ++ Y A D L +
Sbjct: 35 IKYIL-SGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFI 93
Query: 59 IQITD 63
I++ D
Sbjct: 94 IKVQD 98
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 52.4 bits (126), Expect = 2e-09
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG---LSTTAMVR 58
+ Y L F + +G+I Q LD E RS Y A DR + +
Sbjct: 36 IKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFI 94
Query: 59 IQITD 63
I+I D
Sbjct: 95 IKIQD 99
Score = 52.4 bits (126), Expect = 2e-09
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 70 IFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSSGELF 129
++N L + T + L +D D G+I Y + +F ID ++G++
Sbjct: 4 VWNQFF---VLEEYTGTDPLYVGKLHSDMDRGD-GSIKYILSGEGAGIVFTIDDTTGDIH 59
Query: 130 VTRGNFLSR--SNSYHINVSAMD-GGGNKCSQDAQVNINII 167
+ L R + Y + A+D G +++ I I
Sbjct: 60 AIQ--RLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQ 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-06
Identities = 45/246 (18%), Positives = 76/246 (30%), Gaps = 70/246 (28%)
Query: 5 TLGESPSRTNHFYMKSVSGEICIAQ---------DLDFESRSSYEFPVVATDRGGLSTTA 55
L + + + ++ I + D D+ P++ G+
Sbjct: 197 ELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDKDYLLSIPISCPLI-----GV--IQ 245
Query: 56 MVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAF------AVVLATDRDSDRFGTISYK 109
+ +T F P E LR ++ T AV +A + F K
Sbjct: 246 LAHYVVTAKLLG---FTPGE----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 110 IVTGKDANLFRIDRSSGELFVTRGN--FLSRSNSYHINVSAMDGG-GNKCSQ-------D 159
+T LF I G R + + S I +++ G
Sbjct: 299 AIT----VLFFI----G----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 160 AQVN--INIINSHMP------IPLFQQSTYSFVV---PEDVFK-NSIVGTIKAATS-DSG 206
QV +N NSH+P I L + VV P+ ++ N + KA + D
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 207 KFTEFS 212
+ FS
Sbjct: 406 R-IPFS 410
Score = 37.3 bits (86), Expect = 0.003
Identities = 49/312 (15%), Positives = 88/312 (28%), Gaps = 117/312 (37%)
Query: 1 MVNY-----TLGESPSRTNHFYMKSVSGE-------ICIAQDLDFES------------- 35
+ +Y LG +P Y+K +G + IA+ +ES
Sbjct: 246 LAHYVVTAKLLGFTPGELRS-YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 36 ----RSSYEFPVVA---------TDRGGLSTTAMVRI----------QITDVNDNEPIFN 72
R +P + + + M+ I + N + P
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 73 PVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTI--SYKIVTGKDANLFRIDRSSGEL-F 129
VE +SL + VV + K +G D + RI S +L F
Sbjct: 365 QVE--ISL---VNGAKNL-VVSGPPQSLYGLNLTLRKAKAPSGLDQS--RIPFSERKLKF 416
Query: 130 VTRGNFLSRSNSYHINVSA-MDGGGNKCSQD-AQVNINIINSHMPIPLFQQSTYS----- 182
R FL ++ +H S + + ++D + N++ + IP++ T+
Sbjct: 417 SNR--FLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVY--DTFDGSDLR 469
Query: 183 --------------FVVPED-------------VF------------KNSIVGT----IK 199
+P F + GT I
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 200 AATSDSGKFTEF 211
A T D ++
Sbjct: 530 AGTLDINPDDDY 541
Score = 31.6 bits (71), Expect = 0.22
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 37/122 (30%)
Query: 17 YMKSVSGEIC---IAQDLDFESRSSYEFPVVATDRG----GLSTTAMVRI--QITDVNDN 67
+ S I + ++ F + + PV T G LS + RI I
Sbjct: 431 LLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDLRVLSGSISERIVDCII----R 485
Query: 68 EPI---------------FNP--VEYNVSLRDDIQTTTAFAVVLATDRD---SDRFGTIS 107
P+ F P L + T V++A D D +G
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG--- 542
Query: 108 YK 109
+K
Sbjct: 543 FK 544
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 31.8 bits (73), Expect = 0.054
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 9 SPSRTNHFYMKSVSGEICIAQDLDFE------SRSSYEFPVVATDRGGLSTTAMVRIQIT 62
S ++ SG + + + LD E + F V+ IQ+
Sbjct: 50 SKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFIQ---GEIQLQ 106
Query: 63 DVNDNEPIFNPVEYNVSL 80
DVND+ P F E S
Sbjct: 107 DVNDHAPEFMEDESGPSS 124
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 31.1 bits (71), Expect = 0.24
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 27 IAQDLDFESRSSYEFPVVATDRGGLSTTAMVRI------QITDVNDNE-PIFN--PVEYN 77
+A+ +D E+ + + GG S R+ + VN P F P +++
Sbjct: 197 VAEAVDLEAIRASGLRIGVDPLGGASLRVWERLAESHGLPLEVVNPTLDPTFRFMPKDHD 256
Query: 78 VSLRDDIQTTTA----------FAVVLATDRDSDRFG 104
+R D + A F + + D D+DR G
Sbjct: 257 GKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDADRHG 293
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 29.2 bits (64), Expect = 1.2
Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 5/183 (2%)
Query: 2 VNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
+Y + ++++ C L + + A S +
Sbjct: 41 FDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFT- 99
Query: 62 TDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRI 121
+ P E ++ D + + + +Y +V K+++
Sbjct: 100 ---PFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE 156
Query: 122 DRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQQSTY 181
+ LS +Y + V A K + V+ +P +
Sbjct: 157 RIENIYSRHKIYK-LSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEV 215
Query: 182 SFV 184
S
Sbjct: 216 SVQ 218
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 28.2 bits (63), Expect = 1.6
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 37 SSYEFPVVATDRGGLSTTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTTAFAVV-LA 95
+ Y +VA S ++ + +S D T + V
Sbjct: 69 TEYTISLVAEKGRHKSKPTTIKGSTV--------VGSPK-GISFSD--ITENSATVSWTP 117
Query: 96 TDRDSDRFGTISYKIVTGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGN 154
D + +SY +TG N+ +D S + + L Y++N+ ++ G
Sbjct: 118 PRSRVDSY-RVSYVPITGGTPNVVTVDGSKTRTKLVK---LVPGVDYNVNIISVKGFEE 172
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 28.0 bits (62), Expect = 2.1
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 1/72 (1%)
Query: 3 NYTL-GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQI 61
N+TL E + D + E V A + G T+ +
Sbjct: 39 NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP 98
Query: 62 TDVNDNEPIFNP 73
P N
Sbjct: 99 VYKVKPNPPHNL 110
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 26.4 bits (59), Expect = 3.2
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 9 SPSRTNHFYMKSVSGEICIAQDLDFE------SRSSYEFPVVATDRGGLSTTAMVRIQIT 62
S R + + +G + + +D E + S V+ + V +++
Sbjct: 42 SKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFH---VEVEVR 98
Query: 63 DVNDN 67
D+NDN
Sbjct: 99 DINDN 103
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 26.9 bits (59), Expect = 4.6
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 37 SSYEFPVVATDRGGLS--------TTAMVRIQITDVNDNEPIFNPVEYNVSLRDDIQTTT 88
YE +++ + G TT+ ++ E S T +
Sbjct: 67 VVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITAS 126
Query: 89 AFAVVLATDRDSDRFGTISYKIV-TGKDANLFRIDRSSGELFVTRGNFLSRSNSYHINVS 147
+F V + D+ + Y++ G + + ++ + + L Y +NV
Sbjct: 127 SFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPD---LLPGRKYIVNVY 183
Query: 148 AMDGGGN 154
+ G
Sbjct: 184 QISEDGE 190
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 58 RIQITDVNDNE-PIFN--PVEYNVSLRDDIQTTTAFA----------VVLATDRDSDRFG 104
++ +T VND F ++ + ++R D + A A + A D D DR G
Sbjct: 276 KLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHG 335
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 27.1 bits (59), Expect = 5.1
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 2 VNYTLGESPSRTNHF-----YMKSVSGEI-CIAQDLDFESRSSYEFPVVATDRGGLSTTA 55
NY L +H Y+K+ I C L+ + V + ++
Sbjct: 167 TNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSS 226
Query: 56 MVRIQITDVNDNEPIFN 72
Q+ ++ P
Sbjct: 227 YFTFQLQNIVKPLPPVY 243
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 26.3 bits (57), Expect = 5.3
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEFS 212
F + YS V+P+DV + + +K + + + ++
Sbjct: 34 TGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYE 72
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 26.5 bits (59), Expect = 8.3
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 42 PVVATDRGGLSTT 54
PV+A GGL
Sbjct: 351 PVIAARVGGLPIA 363
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG,
structural genomics, PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens str} SCOP:
d.3.1.19
Length = 207
Score = 25.9 bits (56), Expect = 8.4
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEF 211
P F + T + VP +F+ + + A+ +D G+ +F
Sbjct: 104 PAFSEGTDALAVPAKMFQRPL-SAMAASINDLGQSGDF 140
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
acyltransferase, mycobacterium tuberculosis structural
proteomics project; HET: DKA; 1.08A {Mycobacterium
tuberculosis} SCOP: d.104.1.3
Length = 232
Score = 26.1 bits (58), Expect = 9.5
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 41 FPVVATDRGGLST 53
PVV TDRGG T
Sbjct: 71 TPVVDTDRGGKIT 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,009,582
Number of extensions: 167988
Number of successful extensions: 632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 112
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)