RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11061
(212 letters)
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 53.6 bits (128), Expect = 3e-10
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 69 PIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIV----TGKDANLFRIDRS 124
P+ + V +S ++ + ++ + D+ G + Y I +F I+R
Sbjct: 1 PLGSWVIPPISCPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 125 SGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
+G L VT R +Y + A+ GN ++ I +
Sbjct: 60 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 102
Score = 38.6 bits (89), Expect = 7e-05
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
V Y++ G F ++ +G + + + LD E ++Y A G +
Sbjct: 37 VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 96
Query: 57 VRIQITD 63
+ I +TD
Sbjct: 97 ILITVTD 103
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 52.1 bits (124), Expect = 8e-10
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 93 VLATDRDSDRFGTISYKIVTG----KDANLFRIDRSSGELFVTRGNFLSRSNSYHINVSA 148
++ + DRF + Y I +FRI+ +G + VTR + Y ++ A
Sbjct: 21 LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHA 80
Query: 149 MDGGGNKCSQDAQVNINII 167
+ G+ + ++ IN+I
Sbjct: 81 VSENGSPVEEPMEITINVI 99
Score = 37.8 bits (87), Expect = 1e-04
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 2 VNYTL---GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAM 56
V Y++ G F ++ +G + + + LD E Y A G +
Sbjct: 34 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 93
Query: 57 VRIQITD 63
+ I + D
Sbjct: 94 ITINVID 100
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 47.3 bits (111), Expect = 6e-08
Identities = 17/106 (16%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 66 DNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRSS 125
+ P F P V + +D+ ++A D D + +SY + A +++ +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPARWLTVNKDN 59
Query: 126 GELFVT----RGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
G + R + ++N+Y + + D G + + + ++++
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 105
Score = 39.6 bits (91), Expect = 3e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 14 NHFYMKSVSGEICIAQDLDFES----RSSYEFPVVATDRGG--LSTTAMVRIQITDV 64
+ +G + +LD ES ++Y ++ TD G + T + + + DV
Sbjct: 51 RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 26.1 bits (56), Expect = 1.7
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSGKFTEFS 212
P F + V ED+ + + ++ A D + + S
Sbjct: 4 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLS 42
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 46.6 bits (109), Expect = 1e-07
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGT---ISYKIVTG----KDAN 117
NDN P F + S+R+ +Q T V ATD D + +SY I+ N
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 118 LFRIDRSSGELFVTRGNF-LSRSNSYHINVSAMDGGGNKCSQDAQVNINII 167
LF I+R +G + + + Y + V A D G S + + I I
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 112
Score = 38.1 bits (87), Expect = 1e-04
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 26 CIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
I LD E Y V ATD G LS IQITD
Sbjct: 74 LIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 26.9 bits (58), Expect = 0.92
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKA 200
P F Q + V E V + V + A
Sbjct: 6 PKFTQDVFRGSVREGVQPGTQVMAVSA 32
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 46.0 bits (108), Expect = 1e-07
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 85 QTTTAFAVVLATDRDSDRFGTISYKI----VTGKDANLFRIDRSSGELFVTRGNFLSRSN 140
++ D+ ++ Y + +F I+ SG+L VT+
Sbjct: 15 SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74
Query: 141 SYHINVSAMDGGGNKCSQDAQVNINII 167
+H+ A+D GN+ + IN+I
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVI 101
Score = 37.5 bits (86), Expect = 1e-04
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 7 GESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
G T F + +SG++ + + LD E + + A D G + + I + D
Sbjct: 44 GADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 45.1 bits (105), Expect = 4e-07
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFG------TISYKIVTGKDANL 118
NDN P F +N S+ + + T V A D D I + + N+
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 119 FRIDRSSGELFVTRGNFLS-RSNSYHINVSAMDGGGN---KCSQDAQVNINI 166
F I+ +G++ + Y + + A D GN S A I +
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112
Score = 33.2 bits (74), Expect = 0.007
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 33 FESRSSYEFPVVATDRGG-----LSTTAMVRIQITD 63
E Y + ATD G LS TA I +TD
Sbjct: 79 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 27.4 bits (59), Expect = 0.62
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKA 200
P F ++ VPE + V T+ A
Sbjct: 5 PEFLHQVWNGSVPEGSKPGTYVMTVTA 31
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 44.3 bits (103), Expect = 7e-07
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRF---GTISYKIVTG----KDAN 117
NDN P F + S+ + T+ V ATD D D I+Y IV+ N
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 118 LFRIDRSSGELFVTRGNFLSRSNS-YHINVSAMDGGGNKCSQDAQVNINII 167
+F ++R +G + V S Y + V A D G S A+ I +
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVK 111
Score = 31.2 bits (69), Expect = 0.035
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 33 FESRSSYEFPVVATDRGG--LSTTAMVRIQITD 63
ES +Y V A D G LSTTA I + D
Sbjct: 80 RESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 27.4 bits (59), Expect = 0.74
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSDSG 206
P F Q + V E + V + A +D
Sbjct: 5 PEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 37
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 43.4 bits (101), Expect = 2e-06
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 11/133 (8%)
Query: 63 DVNDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRID 122
++ + F Y+ L D+ V ++ + R
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSE--------PADF 56
Query: 123 RSSGELFVTRGNFLSRSNS-YHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQ-QST 180
+ + V + + A D + Q A VN++ + P+ +
Sbjct: 57 KVDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVA-VNLSREPTLTEEPMKEPHEI 115
Query: 181 YSFVVPEDVFKNS 193
V P + K+S
Sbjct: 116 EEIVFPRQLAKHS 128
Score = 35.0 bits (79), Expect = 0.002
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKAATSD 204
F + YS V+P+DV + + +K + +
Sbjct: 11 TGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN 41
Score = 29.6 bits (65), Expect = 0.15
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 14 NHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAM-VRIQITDVNDNEPIFN 72
+ G + + + +F + A D+ + V + EP+
Sbjct: 53 PADFKVDEDGTVYAVRSFPLTAEQ-AKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKE 111
Query: 73 PVEYNVSL 80
P E +
Sbjct: 112 PHEIEEIV 119
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 41.6 bits (96), Expect = 6e-06
Identities = 6/69 (8%), Positives = 12/69 (17%)
Query: 1 MVNYTLGESPSRTNHFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGGLSTTAMVRIQ 60
S G + + Y V+ +D +V
Sbjct: 36 YPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNAT 95
Query: 61 ITDVNDNEP 69
+
Sbjct: 96 VCSCEGKAI 104
Score = 38.9 bits (89), Expect = 5e-05
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 6/109 (5%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGK-DANLFRIDR 123
NDN P+ +P + + + V+ +D D ++ D
Sbjct: 1 NDNGPVPSPRVFTMCDQ-----NPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 124 SSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMP 172
S G + + Y I V D N +
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAI 104
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 41.9 bits (97), Expect = 6e-06
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
Query: 65 NDNEPIFNPVEYNVSLRDDIQTTTAFAVVLATDRDSDRFGTISYKIVTGKDANLFRIDRS 124
NDN PIF+P Y + ++ + + + + + F I
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 125 SG----ELFVTRGNFLSRSNSYHINVSAMDGGGN---KCSQDAQVNINIIN 168
L +G Y + ++ + + A V + + +
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 35.4 bits (80), Expect = 0.001
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 15 HFYMKSVSGEICIAQDLDFESRSSYEFPVVATDRGG-----LSTTAMVRIQITDV 64
+S G + A+ LDFE R Y + + ++TA V + + DV
Sbjct: 59 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 25.7 bits (55), Expect = 2.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 174 PLFQQSTYSFVVPEDVFKNSIVGTIKA 200
P+F TY+ +VPE+ V +
Sbjct: 6 PIFDPKTYTALVPENE-IGFEVQRLSV 31
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 27.9 bits (61), Expect = 1.0
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 118 LFRIDRSSGELFVTRGNFLSRSNSYHINVSAMDGGGNKCSQDAQVNINIINSHMPIPLFQ 177
L + ++ S+S I ++AM GGG K + + ++ S IPL
Sbjct: 15 LPDLALEQVDISTK---IGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAV 71
Query: 178 QSTYSFVVPED 188
S S +
Sbjct: 72 GSQMSALKDPS 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 718,348
Number of extensions: 30785
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 33
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)