BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11062
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVD 134
NDN+P FE + + E++A G P+ + A D D G NG+I Y + RL +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 135 QTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
+TSG LS+ +D E + V A D+G PP + TV+L ++D NDN P
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 25 FTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
LD T+G + +D E L +V A G PP A V + I+D NDN P
Sbjct: 64 LRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 7/186 (3%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGDN---GKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEY 193
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D+NDN PVF S Y
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY 226
Query: 194 FVSVSE 199
V E
Sbjct: 227 QGQVPE 232
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRT-AATLDHEVTGVLLLSVQASS-GSPPLYSYA 65
I YTI S DPE FT++ TGVI + LD E L VQA+ L + A
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF 125
+ +T++D NDNAP F +T + VPE+ + + T+ D D+ + + N
Sbjct: 206 KAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVND 264
Query: 126 GDSRLFAV-DQTS--GHLSLSKHLDYETSQRHTIVVSATDQ 163
D + V D T+ G L +K LD+E Q++ + V ++
Sbjct: 265 PDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE 305
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 14 YTIHSGDPEGYFTL--DSTT--GVIRTAATLDHEVTGVLLLSVQASSGSP---PLYSYAQ 66
YT+ DP+ F + D TT G+++TA LD E +L V+ + P L
Sbjct: 259 YTV-VNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTA 317
Query: 67 VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG 126
+ AP F R+ VPE +G + + AR+ D+ + KI Y +
Sbjct: 318 TVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDT-- 375
Query: 127 DSRLFAVDQTSGHLSLSKHLDYETSQR-----HTIVVSATDQGDPPMSSNLTVLLEVQDV 181
+ ++ +G + +D E ++ + ++ ATD G P + T+LL + DV
Sbjct: 376 -ANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDV 434
Query: 182 NDNPPVFE 189
NDN P+ E
Sbjct: 435 NDNAPIPE 442
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ +G + LD E+ L A + + + + + D NDN P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLAS--GNFGDSRLFAVDQ 135
EF SVPE + G + TV A D D + NG +RY + S + +F ++
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 136 TSGH-LSLSKHLDYETSQRHTIVVSATD-QGDPP--MSSNLTVLLEVQDVNDNPPVFERS 191
+G ++++ LD E Q++T+++ ATD +G+P +S+ T ++ V DVNDNPP F
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAM 226
Query: 192 EYFVSVSE 199
++ V E
Sbjct: 227 TFYGEVPE 234
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 14 YTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQASSGSP-------PLY 62
Y I GDP G F + +S G++ +D E + +L+V A + P P
Sbjct: 261 YRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQ 320
Query: 63 SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLAS 122
S A V VT+ D N+N P F + E G L T+ A+D D IRY S
Sbjct: 321 STATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS 379
Query: 123 GNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSAT----DQGDPPMSSNLTVLLEV 178
+ +D +G ++ LD E+ + +AT D G PPMS T+ + +
Sbjct: 380 D---PANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYL 436
Query: 179 QDVNDNPP 186
D+NDN P
Sbjct: 437 LDINDNAP 444
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 27/234 (11%)
Query: 1 MKILLLDQSNP------IRYTIHSGDPE----GYFTLDSTTG-VIRTAATLDHEVTGVLL 49
M + +D +P +RY I S P FT+++ TG +I AA LD E
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 50 LSVQAS--SGSPP--LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAA-LGLPLYTVV 104
L +QA+ G+P L + A +T+ D NDN PEF + T VPE+ + + TV
Sbjct: 188 LIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVT 247
Query: 105 ARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTS--GHLSLSKHLDYETSQRHTIVVSATD 162
+D+ Y ++ G+ D S G +++ K +D+ET++ + V+A +
Sbjct: 248 DKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAEN 307
Query: 163 Q-------GDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
Q PP S+ TV + V DVN+N P F + + E L A + + T
Sbjct: 308 QVPLAKGIQHPPQST-ATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTT 359
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVL-----LLSVQASSGSPPLYSYAQ 66
IRYT S DP + +D G I T A LD E V + + +G PP+
Sbjct: 373 IRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGT 431
Query: 67 VKVTIEDRNDNAPEF---ESTTIRLSVPESAALGLPLYTVVARDKDSGDN-GKIRYHLAS 122
+++ + D NDNAP+ E+ T P S + A D D N G + L
Sbjct: 432 LQIYLLDINDNAPQVLPQEAETCETPEPNS-------INITALDYDIDPNAGPFAFDLPL 484
Query: 123 GNFGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
R + +++ +G + L+ + + + + + + TD G+PP SN+++L
Sbjct: 485 SPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPP-KSNISIL 537
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD---SRLFAVDQTSGHLSLSK 144
+++PE++ P V R D N +RY + +G D + +F ++ SG LS++K
Sbjct: 7 INLPENSRGPFPQELVRIR-SDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTK 64
Query: 145 HLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEA 200
LD E R + A D + + + +++ V D+NDN P F + SV E
Sbjct: 65 PLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 11/186 (5%)
Query: 2 KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
++L D N P+ + + + +F ++ TGV+ LD E + S
Sbjct: 31 QLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 90
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
+ +V + + D NDNAP F + + +PE+ +G P++ V A D D G G + Y
Sbjct: 91 ITR--KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 148
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL- 176
S FA+D G +++ + LDYE +Q + + V+ATDQ P+S +NL +++
Sbjct: 149 QPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIIT 204
Query: 177 EVQDVN 182
++QD++
Sbjct: 205 DMQDMD 210
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
L + E +G + ++ARD D+ L G G+ SR FAV+ +G + L +
Sbjct: 17 LLISEDTPVGSSVTQLLARDMDND-------PLVFGVSGEEASRFFAVEPDTGVVWLRQP 69
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
LD ET T+ S +D QG V ++V DVNDN P F Y V + E P
Sbjct: 70 LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV- 124
Query: 205 SQVRTTCTPLYVL 217
TP++++
Sbjct: 125 ------GTPIFIV 131
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 7/178 (3%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 49 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERS 191
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D+NDN PVF S
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPS 226
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 9 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 63
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 64 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 123
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 124 VPGTSVMKVSAT 135
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 9 SNPIRYTIHSGDPEG-YFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS--SGSPPLYSYA 65
S I+Y I SGD G F ++ TG I LD E L+ QA + PL +
Sbjct: 32 SKKIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPS 90
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLAS 122
+ + ++D NDNAPEF + +VPE + LG + V A D D G++ K+ Y +
Sbjct: 91 EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE 150
Query: 123 GNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQG--DPPMSSNLTVLLEVQ 179
G F+++ + + + ++D E + + +V+ A D G +S T+ + +
Sbjct: 151 G----QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLT 206
Query: 180 DVNDNPPVFERSEYFVSVSE 199
DVNDNPP F +S Y SV E
Sbjct: 207 DVNDNPPKFAQSLYHFSVPE 226
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 14 YTIHSGDPEGYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQA---SSGSPPLYSYAQVKV 69
Y+I G P YF+++ T +I+TA +D E L+ +QA S L + V
Sbjct: 146 YSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTV 203
Query: 70 TIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR 129
T+ D NDN P+F + SVPE LG + V A D+D G+N + Y + G+ +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD--GTA 261
Query: 130 LFAVDQTS----GHLSLSKHLDYETSQRHTIVVSATD-QGDPPMSS 170
LF + + G + L K LD+ET + +T+ V A + DP SS
Sbjct: 262 LFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSS 307
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 2 KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
++L D N P+ + + + +F ++ TGV+ LD E + S
Sbjct: 32 QLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 91
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
+ +V + + D NDNAP F + + +PE+ +G P++ V A D D G G + Y
Sbjct: 92 ITR--KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL 176
S FA+D G +++ + LDYE +Q + + V+ATDQ P+S +NL +++
Sbjct: 150 QPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII 204
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
L + E +G + ++ARD D+ L G G+ SR FAV+ +G + L +
Sbjct: 18 LLISEDTPVGSSVTQLLARDMDND-------PLVFGVSGEEASRFFAVEPDTGVVWLRQP 70
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
LD ET T+ S +D QG V ++V DVNDN P F Y V + E P
Sbjct: 71 LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV- 125
Query: 205 SQVRTTCTPLYVL 217
TP++++
Sbjct: 126 ------GTPIFIV 132
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 2 KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
++L D N P+ + + + +F ++ TGV+ LD E + S
Sbjct: 32 QLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 91
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
+ +V + + D NDNAP F + + +PE+ +G P++ V A D D G G + Y
Sbjct: 92 ITR--KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL 176
S FA+D G +++ + LDYE +Q + + V+ATDQ P+S +NL +++
Sbjct: 150 QPP----SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII 204
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
L + E +G + ++ARD D+ L G G+ SR FAV+ +G + L +
Sbjct: 18 LLISEDTPVGSSVTQLLARDMDND-------PLVFGVPGEEASRFFAVEPDTGVVWLRQP 70
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
LD ET T+ S +D QG V ++V DVNDN P F Y V + E P
Sbjct: 71 LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV- 125
Query: 205 SQVRTTCTPLYVL 217
TP++++
Sbjct: 126 ------GTPIFIV 132
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 2 KILLLDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
++L D N P+ + + + +F ++ TGV+ LD E + S
Sbjct: 32 QLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV 91
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
+ +V + + NDNAP F + + +PE+ +G P++ V A D D G G + Y
Sbjct: 92 ITR--KVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF 149
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMS--SNLTVLL 176
S FA+D G +++ + LDYE +Q + + V+ATDQ P+S +NL +++
Sbjct: 150 QP----PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIII 204
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
L + E +G + ++ARD D+ L G G+ SR FAV+ +G + L +
Sbjct: 18 LLISEDTPVGSSVTQLLARDMDND-------PLVFGVSGEEASRFFAVEPDTGVVWLRQP 70
Query: 146 LDYETSQRHTIVVSATD-QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAK 204
LD ET T+ S +D QG V ++V VNDN P F Y V + E P
Sbjct: 71 LDRETKSEFTVEFSVSDHQG----VITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPV- 125
Query: 205 SQVRTTCTPLYVL 217
TP++++
Sbjct: 126 ------GTPIFIV 132
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 7 DQSNPIRYTI----HSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPL 61
D+ N + Y+I P+G F ++ TG + LD E +LS A S P+
Sbjct: 35 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 94
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRY 118
++ + + D+NDN P+F R SV E G + V A D+D NG + Y
Sbjct: 95 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 154
Query: 119 HLASGNFGDS--RLFAVDQTSGHLSL-SKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
+ + + LF +++ +G +SL LD E +T+ V ATD +S +
Sbjct: 155 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 214
Query: 176 LEVQDVNDNPPVFERSEYFVSVSE 199
+++ D NDN P+F+ Y V E
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPE 238
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 23 GYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQASSGSP---PLYSYAQVKVTIEDRN 75
G+F + +S G++ TA LD E+ +L + + P PL + +
Sbjct: 273 GFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 332
Query: 76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQ 135
+ AP F R+ V E + G + ++VA+D D K+ Y + + +R V++
Sbjct: 333 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND---PARWLTVNK 389
Query: 136 TSGHLSLSKHLDYET----SQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPV 187
+G ++ + +LD E+ + +T+++ TD G + T++L V DVNDN PV
Sbjct: 390 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 445
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQASS-GSPPLYSYA 65
+ Y+I DPE FT++ TGVI T LD E L+VQA+ L
Sbjct: 152 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 211
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD-SGDNGKIRYHLASGN 124
+ + I D NDNAP F+ T VPE+ +G + + D D G + N
Sbjct: 212 KAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVN 270
Query: 125 FGDSRLFAVDQTS--GHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNL-----TVLLE 177
G D S G L+ +K LD+E +++ V+ T + P S L TV +
Sbjct: 271 EGGFFNITTDPESNQGILTTAKGLDFELRKQY--VLQITVENAEPFSVPLPTSTATVTVT 328
Query: 178 VQDVNDNP---PV---------FERSEYFVSVSEALPAKSQVR 208
V+DVN+ P P R E +S+ P K Q++
Sbjct: 329 VEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQ 371
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 118 YHLASGNFGDS---RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTV 174
Y+ +G D+ +F ++ +G + +++ LD E ++ + A + P+ + +
Sbjct: 41 YYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEI 100
Query: 175 LLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
+ V D NDN P F + + SV E + +QV
Sbjct: 101 TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV 133
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 7 DQSNPIRYTI----HSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPL 61
D+ N + Y+I P+G F ++ TG + LD E +LS A S P+
Sbjct: 184 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 243
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRY 118
++ + + D+NDN P+F R SV E G + V A D+D NG + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 119 HLASGNFGDS--RLFAVDQTSGHLSL-SKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
+ + + LF +++ +G +SL LD E +T+ V ATD +S +
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 363
Query: 176 LEVQDVNDNPPVFERSEYFVSVSE 199
+++ D NDN P+F+ Y V E
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPE 387
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 23 GYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQASSGSP---PLYSYAQVKVTIEDRN 75
G+F + +S G++ TA LD E+ +L + + P PL + +
Sbjct: 422 GFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 481
Query: 76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQ 135
+ AP F R+ V E + G + ++VA+D D K+ Y + + +R V++
Sbjct: 482 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND---PARWLTVNK 538
Query: 136 TSGHLSLSKHLDYET----SQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPV 187
+G ++ + +LD E+ + +T+++ TD G + T++L V DVNDN PV
Sbjct: 539 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 594
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 95/230 (41%), Gaps = 43/230 (18%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQASS-GSPPLYSYA 65
+ Y+I DPE FT++ TGVI T LD E L+VQA+ L
Sbjct: 301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 360
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG------KIRYH 119
+ + I D NDNAP F+ T VPE+ +G + + D D KIR +
Sbjct: 361 KAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVN 419
Query: 120 LASGNFGDSRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNL--- 172
G F F + + G L+ +K LD+E R V+ T + P S L
Sbjct: 420 --EGGF-----FNITTDPESNQGILTTAKGLDFEL--RKQYVLQITVENAEPFSVPLPTS 470
Query: 173 --TVLLEVQDVNDNP---PV---------FERSEYFVSVSEALPAKSQVR 208
TV + V+DVN+ P P R E +S+ P K Q++
Sbjct: 471 TATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQ 520
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFE 189
+F ++ +G + +++ LD E ++ + A + P+ + + + V D NDN P F
Sbjct: 205 VFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT 264
Query: 190 RSEYFVSVSEALPAKSQV 207
+ + SV E + +QV
Sbjct: 265 QDVFRGSVREGVQPGTQV 282
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 12 IRYTIHS-GDPEGYFTLDSTTGVIRTAATLDHE---VTGVLLLSVQASSGSPPLYSYAQV 67
IRYT+ + G G F + T+G+++ A LD E V L V A+ S + +
Sbjct: 251 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDL 310
Query: 68 KVTIEDRNDNAPEFESTTIRL-SVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG 126
+ + D NDNAP+FE + +V E LG + V A D DSG N +I Y ++ +
Sbjct: 311 TIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH-- 368
Query: 127 DSRLFAVDQTSGHLSLSKHLDYETSQR-HTIVVSATDQGDPPMSSNLTVLL 176
FAVD ++G + +K LD + + + +V+A D+G+PP S TV +
Sbjct: 369 ----FAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAAT----LDHEVTGVLLLSVQASSGSPPLY 62
D + I Y I G F +D +GV+RT T LD E VL + + +G
Sbjct: 141 DTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEY--VLYVKAEDQNGK---V 195
Query: 63 SYAQVKVTIEDR-----NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIR 117
+ + T E+R AP+F + +PE+ + ++ A+ S + +IR
Sbjct: 196 DDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIR 252
Query: 118 YHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSAT-DQGDPPMSSNLT 173
Y L + G + F + TSG + L+K LD+E ++ ++++V+AT D G S +LT
Sbjct: 253 YTLKAQGQG-AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLT 311
Query: 174 VLLEVQDVNDNPPVFERSEYFV-SVSEALP 202
+ V DVNDN P FE +Y +V E +P
Sbjct: 312 I--RVTDVNDNAPKFELPDYQAHNVDEDIP 339
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 135 QTSGHLSLSKHLDYE------TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
+T+G + + K DYE T I+ + + N V++ V+DVND PP F
Sbjct: 52 ETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF 111
Query: 189 ERSEYFVSVSEALPAKSQVRTTC---TPLYVL 217
++ LP ++ V+ TP++ L
Sbjct: 112 --------INRPLPMQAVVQLNAPPNTPVFTL 135
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 48 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 107
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 108 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 167
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDN 184
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D+NDN
Sbjct: 168 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDN 218
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 8 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 62
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 63 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 122
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 123 VPGTSVMKVSAT 134
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRT-AATLDHEVTGVLLLSVQASS-GSPPLYSYA 65
I YTI S DPE FT++ TGVI + LD E L VQA+ L + A
Sbjct: 147 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 206
Query: 66 QVKVTIEDRNDNA 78
+ +T++D NDNA
Sbjct: 207 KAVITVKDINDNA 219
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNF-GDSRLFAV 133
NDN P F+ + + +PE+A +G + + A D D G N +IRY + RLFA+
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 134 DQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
+ T+G +++ + LD E + H + V A+D P + TV + V DVN
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARA--TVTINVTDVN 114
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 25 FTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRN 75
F L++TTG+I +LD E T + ++V AS GS + A V + + D N
Sbjct: 65 FALNNTTGLITVQRSLDREETAIHKVTVLASDGS-STPARATVTINVTDVN 114
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 46 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 105
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 106 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 165
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 166 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 6 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 60
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 61 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 120
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 121 VPGTSVMKVSAT 132
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 106 RDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD 162
RDK++ K+ Y + +G D +F +++ +G L +++ LD E ++ + A
Sbjct: 28 RDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82
Query: 163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALPAKSQVRTTCT 212
++ + +++ V D NDN P F + + SV+E A+P S ++ + T
Sbjct: 83 SNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT 133
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 7 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 61
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 121
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 122 VPGTSVMKVSAT 133
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 7 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 61
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 121
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 122 VPGTSVMKVSAT 133
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 106 RDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD 162
RDK++ K+ Y + +G D +F +++ +G L +++ LD E ++ + A
Sbjct: 28 RDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82
Query: 163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALPAKSQVRTTCT 212
+ + +++ V D NDN P F + + SV+E A+P S ++ + T
Sbjct: 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT 133
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 49 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 168
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 169 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 106 RDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD 162
RDK++ K+ Y + +G D +F +++ +G L +++ LD E ++ + A
Sbjct: 30 RDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 84
Query: 163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALPAKSQVRTTCT 212
+ + +++ V D NDN P F + + SV+E A+P S ++ + T
Sbjct: 85 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT 135
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 106 RDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD 162
RDK++ K+ Y + +G D +F +++ +G L +++ LD E ++ + A
Sbjct: 28 RDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82
Query: 163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALPAKSQVRTTCT 212
+ + +++ V D NDN P F + + SV+E A+P S ++ + T
Sbjct: 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT 133
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 106 RDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATD 162
RDK++ K+ Y + +G D +F +++ +G L +++ LD E ++ + A
Sbjct: 28 RDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82
Query: 163 QGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALPAKSQVRTTCT 212
+ + +++ V D NDN P F + + SV+E A+P S ++ + T
Sbjct: 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT 133
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S L+ LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 7 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 61
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 62 VTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 121
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 122 VPGTSVMKVSAT 133
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF SV E A G + V A D D N I Y + S + +F V+
Sbjct: 107 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Query: 135 QTSGHLSL-SKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ +G +S+ + LD E+ +T+VV A D +S+ ++ V+D
Sbjct: 167 RDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 7 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 61
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 62 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 121
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 122 VPGTSVMKVSAT 133
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ +G + LD E+ L A + + + + + D NDN P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLAS--GNFGDSRLFAVDQ 135
EF SVPE + G + TV A D D + NG +RY + S + +F ++
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINN 166
Query: 136 TSGH-LSLSKHLDYETSQRHTIVVSATD-QGDPP--MSSNLTVLLEVQD 180
+G ++++ LD E Q++T+++ ATD +G+P +S+ T ++ V D
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD---SRLFAVDQTSGHLSLSK 144
+++PE++ P V R D N +RY + +G D + +F ++ SG LS++K
Sbjct: 7 INLPENSRGPFPQELVRIR-SDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTK 64
Query: 145 HLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEA 200
LD E R + A D + + + +++ V D+NDN P F + SV E
Sbjct: 65 PLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + L S SS + ++ +T+ D+NDN P
Sbjct: 47 PVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSRLFAVD 134
EF + SV E A G + V A D D N I Y + S + D +F ++
Sbjct: 107 EFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTIN 166
Query: 135 QTSGHLS-LSKHLDYETSQRHTIVVSATD-QGD 165
+ +G +S ++ LD E+ +T+VV A D QG+
Sbjct: 167 RNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 88 LSVPESAALGLPLYTV-VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLSLS 143
+S PE+ P V + +KD GK+ Y + +G D+ +F +++ +G L ++
Sbjct: 7 ISSPENEKGPFPKNLVQIKSNKDK--EGKVFYSI-TGQGADTPPVGVFIIERETGWLKVT 63
Query: 144 KHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-ALP 202
+ LD E +T+ A + + +L+ V D NDN P F + + SV E ALP
Sbjct: 64 EPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALP 123
Query: 203 AKSQVRTTCT 212
S + T T
Sbjct: 124 GTSVMEVTAT 133
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ +G + LD E+ L A + + + + + D NDN P
Sbjct: 47 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLAS--GNFGDSRLFAVDQ 135
EF SVPE + G + TV A D D + NG +RY + S + +F ++
Sbjct: 107 EFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 136 TSGH-LSLSKHLDYETSQRHTIVVSATD-QGDPP--MSSNLTVLLEVQD 180
+G ++++ LD E Q++T+++ ATD +G+P +S+ T ++ V D
Sbjct: 167 ETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD---SRLFAVDQTSGHLSLSK 144
+++PE++ P V R D N +RY + +G D + +F ++ SG LS++K
Sbjct: 7 INLPENSRGPFPQELVRIR-SDRDKNLSLRYSV-TGPGADQPPTGIFIINPISGQLSVTK 64
Query: 145 HLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEA 200
LD E R + A D + + + +++ V D+NDN P F + SV E
Sbjct: 65 PLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG 120
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 12/160 (7%)
Query: 12 IRYTIHSGDPEG-YFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSYAQVK 68
I+Y I SG+ G F +D +G I TLD E L QA + PL ++
Sbjct: 36 IKY-ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFI 94
Query: 69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNF 125
V ++D NDN PEF +VPE + +G + V A D D G++ K+ Y + G
Sbjct: 95 VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-- 152
Query: 126 GDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQG 164
F+V+ +G + + ++D E + + +V+ A D G
Sbjct: 153 --QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 107 DKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG-D 165
D DSGD G I+Y L+ G +F +D SG++ +K LD E ++T++ A D+ +
Sbjct: 28 DIDSGD-GNIKYILSGEGAG--TIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 166 PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTC 211
P+ +++VQD+NDNPP F Y +V P +S V T+
Sbjct: 85 RPLEPPSEFIVKVQDINDNPPEFLHEIYHANV----PERSNVGTSV 126
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 16 IHSGDPEG-YFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS--GSPPLYSYAQVKVTIE 72
I SGD G F ++ TG I+ LD E V +L QA + P+ ++ + I
Sbjct: 38 ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIH 97
Query: 73 DRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASGNFGDSR 129
D NDN P F +VPE A +G + V A D D G++ K+ Y + G
Sbjct: 98 DINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG----QP 153
Query: 130 LFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQG 164
F+V+ +G + + ++D E +++ +V+ A D G
Sbjct: 154 YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMG 189
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 107 DKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ-GD 165
D+D GD G ++Y L+ GD LF +++ +G + +K LD E + + A ++
Sbjct: 27 DQDRGD-GSLKYILSGDGAGD--LFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTG 83
Query: 166 PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS-QVRTTCTPLYVLVEGQCSL 224
P+ ++++ D+NDN P+F + Y +V E + V+ T T G +
Sbjct: 84 RPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK 143
Query: 225 VCWSTLRLMTHSTLKSE 241
V +S L+ + +++SE
Sbjct: 144 VVYSILQGQPYFSVESE 160
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 48 LLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVV--- 104
+++ VQ + Y +V++ + DRNDN+P F+ + +V E +G ++T
Sbjct: 94 IVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGD 153
Query: 105 --ARDKDSGDNGKIRYHLASG--NFGDSRLFAVD-QTSGHLSLSKHLDYETSQRHTIVVS 159
A D D G NG+I Y + + + F + +G++ L K L+YE R+ +++
Sbjct: 154 NGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQ 213
Query: 160 ATDQG 164
A D+
Sbjct: 214 ANDRA 218
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 174 VLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
V + V+D NDN P F+ Y+ +V+E P + + T
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFT 148
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAAT----LDHEVTGVLLLSVQASSGSPPLY 62
D + I Y I G F +D +GV+RT T LD E VL + + +G
Sbjct: 136 DTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEY--VLYVKAEDQNGK---V 190
Query: 63 SYAQVKVTIEDR-----NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIR 117
+ + T E+R AP+F + +PE+ + ++ A+ S + +IR
Sbjct: 191 DDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIR 247
Query: 118 YHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSAT-DQGDPPMSSNLT 173
Y L + G + F + TSG + L+K LD+E ++ ++++V+AT D G S +LT
Sbjct: 248 YTLKAQGQG-AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLT 306
Query: 174 VLLEVQDVNDN 184
+ V DVNDN
Sbjct: 307 I--RVTDVNDN 315
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 135 QTSGHLSLSKHLDYE------TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
+T+G + + K DYE T I+ + + N V++ V+DVND PP F
Sbjct: 47 ETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF 106
Query: 189 ERSEYFVSVSEALPAKSQVRTTC---TPLYVL 217
++ LP ++ V+ TP++ L
Sbjct: 107 --------INRPLPMQAVVQLNAPPNTPVFTL 130
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 41 DHEVTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPL 100
++E+T ++ S PP ++ + + D NDNAP F SVPE + LG +
Sbjct: 68 EYELTAHIIDRRNNRSLEPP----SKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123
Query: 101 YTVVARDKDS---GDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIV 157
V A D D + + Y + GN F VD + + LD E+ + I+
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKGN----EYFTVDDSGVIFTARADLDRESQSAYEII 179
Query: 158 VSATDQ-GDPPMSSNLTVLLEVQD 180
V A D G SS TV++ + D
Sbjct: 180 VKAKDALGLTGESSTATVIIRLTD 203
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQG-----DPPMSSNLTVLLEVQDVNDN 184
+F V G + + LD E + + D+ +PP +++V D+NDN
Sbjct: 45 IFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSK----FIIKVSDINDN 100
Query: 185 PPVFERSEYFVSVSEALPAKSQVRTTCTPL 214
P+F + + SV P S++ T+ T +
Sbjct: 101 APIFVQKIFNGSV----PEMSRLGTSVTKV 126
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ TG ++ LD E + +L S SS + ++ +T+ D+NDN P
Sbjct: 49 PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRP 108
Query: 80 EFESTTIRLSVPESAALGLPLYTVVARDKDSGDN 113
EF SV E A G + V A D D N
Sbjct: 109 EFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 LSVPESAALGLPLYTV---VARDKDSGDNGKIRYHLASGNFGDS---RLFAVDQTSGHLS 141
+S PE+ P V RDK++ K+ Y + +G D +F +++ +G L
Sbjct: 9 ISCPENEKGEFPKNLVQIKSNRDKET----KVFYSI-TGQGADKPPVGVFIIERETGWLK 63
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE-A 200
+++ LD E ++ + A + + +++ V D NDN P F + + SV+E A
Sbjct: 64 VTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGA 123
Query: 201 LPAKSQVRTTCT 212
+P S ++ + T
Sbjct: 124 VPGTSVMKVSAT 135
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 20 DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS-PPLYSYAQVKVTIEDRNDNA 78
DP+G F ++ TG + TLD E L V+ + S L ++V + D+NDN
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNR 105
Query: 79 PEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHL--ASGNFGDSRLFAVD 134
P F V E + G + + A D D + DN +RY++ + + +F +D
Sbjct: 106 PIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYID 165
Query: 135 QTSGHLSL---SKHLDYET--SQRHTIVVSATD 162
G + LD ET + ++ +++ A D
Sbjct: 166 PEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%)
Query: 90 VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
+PE+ P D D + K R + F +++ +G +S+++ LD E
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE 69
Query: 150 TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
T + + V TD + + + + V D NDN P+F Y V E P + V
Sbjct: 70 TIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Query: 20 DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLY-SYAQVKVTIEDRNDNA 78
DP+G F ++ +G + LD E L V+ + S + ++ +++ D+NDN
Sbjct: 45 DPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNR 104
Query: 79 PEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHL--ASGNFGDSRLFAVD 134
P F+ V E + G + + A D D S DN +RY++ + +F +D
Sbjct: 105 PMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYID 164
Query: 135 QTSGHLSLSKH---LDYETSQ--RHTIVVSATDQG 164
G + LD ET + ++ +V+ A D G
Sbjct: 165 PEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFE 189
+F +++ SG +S+++ LD E + + V TD + + + + V D NDN P+F+
Sbjct: 49 IFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFK 108
Query: 190 RSEYFVSVSEALPAKSQV 207
Y V E P + V
Sbjct: 109 EGPYVGHVMEGSPTGTTV 126
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
+F ++ SG LS++K LD E R + A D + + + +++ V D+NDN P F
Sbjct: 52 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNAP 79
P G F ++ +G + LD E+ L A + + + + + D NDN P
Sbjct: 49 PTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 108
Query: 80 EF 81
EF
Sbjct: 109 EF 110
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 20 DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASS-GSPPLYSYAQVKVTIEDRNDNA 78
+P+G F ++ TG + TLD EV V L V+ + L ++V + D+NDN
Sbjct: 45 EPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNR 104
Query: 79 P 79
P
Sbjct: 105 P 105
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%)
Query: 90 VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
+PE+ P D D + K R + +F +++ +G +S+++ LD E
Sbjct: 9 IPENQRQPFPRDVGKVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDRE 68
Query: 150 TSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
+ + V TD + + + + V D NDN P
Sbjct: 69 VIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 21/93 (22%)
Query: 107 DKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP 166
D DSGD G I+Y L+ G +F +D SG++ +K LD E ++T++ A D+
Sbjct: 28 DIDSGD-GNIKYILSGEGAG--TIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR--- 81
Query: 167 PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE 199
+ N P+ SE+ V V +
Sbjct: 82 ---------------DTNRPLEPPSEFIVKVQD 99
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 88 LSVPESAALGLP--LYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
+S+PE+ + P + VV D+ G KI+ + + +F +++ SG +S++K
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGS--KIKLYGKGVDQEPKGIFKINENSGEVSVTKA 64
Query: 146 LDYETSQRHTIVVSATDQ 163
LD E + + V TD+
Sbjct: 65 LDREAIPSYQLQVETTDE 82
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 130 LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
+F ++ +G L+++ LD E + + A D + L + ++V D+NDN PVF
Sbjct: 62 IFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHEVTGVLLLS-----VQASSGSPPLYSYAQVKVTIEDRN 75
P G F + TG + + LD E T LL+ + ++ PL ++++ + D N
Sbjct: 59 PFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPL----ELRIKVLDIN 114
Query: 76 DNAPEF 81
DN P F
Sbjct: 115 DNEPVF 120
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 21 PEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQASSGSPPLYSYAQVKVTIEDRNDN 77
P G F ++ TG ++ LD E + L S SS + ++ +T+ D+NDN
Sbjct: 51 PVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 20 DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGS 58
DP+G F ++ TG + TLD E L V+ + S
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDAS 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,845,927
Number of Sequences: 62578
Number of extensions: 301480
Number of successful extensions: 865
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 96
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)