RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11062
(281 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 182 bits (463), Expect = 2e-57
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 11 PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVT 70
P+ + + + +F ++ TGV+ LD E + S +V +
Sbjct: 41 PLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV--ITRKVNIQ 98
Query: 71 IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRL 130
+ D NDNAP F + + +PE+ +G P++ V A D D G G + Y S
Sbjct: 99 VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQP----PSPF 154
Query: 131 FAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-PMSSNLTVLLEVQDVNDN 184
FA+D G +++ + LDYE +Q + + V+ATDQ P+S+ + + + D+ D
Sbjct: 155 FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 140 bits (356), Expect = 2e-41
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 75 NDNAPEFESTTIR--LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFA 132
+ P F + L + E +G + ++ARD D N + + ++ SR FA
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEE--ASRFFA 56
Query: 133 VDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE 192
V+ +G + L + LD ET T+ S +D V ++V DVNDN P F
Sbjct: 57 VEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQP 113
Query: 193 YFVSVSEALPAKSQV 207
Y V + E P + +
Sbjct: 114 YSVRIPENTPVGTPI 128
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 184 bits (469), Expect = 7e-57
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 13/211 (6%)
Query: 6 LDQSN-PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS--SGSPPLY 62
LD + I+Y + F ++ TG I LD E L+ QA + PL
Sbjct: 28 LDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLE 87
Query: 63 SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYH 119
++ + ++D NDNAPEF + +VPE + LG + V A D D G++ K+ Y
Sbjct: 88 PPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYS 147
Query: 120 LASGNFGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQG--DPPMSSNLTVLL 176
+ G F+++ + + ++D E + + +V+ A D G +S T+ +
Sbjct: 148 ILEGQP----YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTV 203
Query: 177 EVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
+ DVNDNPP F +S Y SV E + + +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI 234
Score = 155 bits (393), Expect = 1e-45
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQAS---SGSPPLYSYAQV 67
+ Y+I G P YF+++ T +I+TA +D E L+ +QA S L +
Sbjct: 144 LVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTL 201
Query: 68 KVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD 127
VT+ D NDN P+F + SVPE LG + V A D+D G+N + Y + G+
Sbjct: 202 TVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD--G 259
Query: 128 SRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQGDP-------PMSSNLTVLL 176
+ LF + G + L K LD+ET + +T+ V A + P TV +
Sbjct: 260 TALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKI 319
Query: 177 EVQ 179
V+
Sbjct: 320 VVE 322
Score = 112 bits (281), Expect = 3e-29
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 90 VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
+ E + L + D D G + KI+Y L+ G +F ++ +G + K LD E
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGT--IFQINDITGDIHAIKRLDRE 66
Query: 150 TSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
+T+ A D + P+ +++VQD+NDN P F Y +V E + V
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSV 125
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 190 bits (484), Expect = 7e-57
Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA-SSGSPPL 61
D++ +RY++ P G F ++ +G + LD E+ L A +
Sbjct: 29 DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYH 119
+ + + + D NDN PEF SVPE + G + TV A D D + NG +RY
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148
Query: 120 LASGN--FGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPP---MSSNLT 173
+ S +F ++ +G + ++ LD E Q++T+++ ATD P +S+ T
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTAT 208
Query: 174 VLLEVQDVNDNPPVFERSEYFVSVSEALP 202
++ V DVNDNPP F ++ V E
Sbjct: 209 AVITVTDVNDNPPEFTAMTFYGEVPENRV 237
Score = 180 bits (458), Expect = 5e-53
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 19/199 (9%)
Query: 12 IRYTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQAS-------SGSPP 60
Y I GDP G F + +S G++ +D E + +L+V A P
Sbjct: 259 AAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHP 318
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
S A V VT+ D N+N P F + E G L T+ A+D D IRY
Sbjct: 319 PQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTK 377
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLL 176
S + +D +G ++ LD E+ + A+D G PPMS T+ +
Sbjct: 378 LSDP---ANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQI 434
Query: 177 EVQDVNDNPPVFERSEYFV 195
+ D+NDN P E
Sbjct: 435 YLLDINDNAPQVLPQEAET 453
Score = 170 bits (432), Expect = 3e-49
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRTAA-TLDHEVTGVLLLSVQAS-SGSPP---LY 62
+RY I S P FT+++ TG I T A LD E L +QA+ P L
Sbjct: 145 LRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Query: 63 SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG--KIRYHL 120
+ A +T+ D NDN PEF + T VPE+ + + + + DKD Y +
Sbjct: 205 NTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRI 263
Query: 121 ASGNFGDSRLFAVDQTS----GHLSLSKHLDYETSQRHTIVVSATDQGD------PPMSS 170
+ G+ + FA+ G +++ K +D+ET++ + V+A +Q P S
Sbjct: 264 SGGD--PTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS 321
Query: 171 NLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
TV + V DVN+NP F + + E L A + + T
Sbjct: 322 TATVSVTVIDVNENP-YFAPNPKIIRQEEGLHAGTMLTT 359
Score = 166 bits (422), Expect = 7e-48
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 12/194 (6%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL----LSVQAS-SGSPPL 61
IRYT S DP + +D G I T A LD E V + AS +G PP+
Sbjct: 368 YMQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPM 426
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHL 120
+++ + D NDNAP+ E+ + A D D N + L
Sbjct: 427 SGTGTLQIYLLDINDNAPQVLPQEA--ETCETPEPNSI--NITALDYDIDPNAGPFAFDL 482
Query: 121 ASGNFGDSRLFAVDQTSG-HLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ 179
R + +++ +G L+ + + + + + + TD G+PP S+ + ++V
Sbjct: 483 PLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVC 542
Query: 180 DVNDNPPVFERSEY 193
+ N + +
Sbjct: 543 QCDSNGDCTDVHHH 556
Score = 114 bits (288), Expect = 5e-29
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 86 IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLS 143
+++PE++ P +V D N +RY + + +F ++ SG LS++
Sbjct: 5 PPINLPENSRGPFPQE-LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63
Query: 144 KHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPA 203
K LD E R + A D + + + +++ V D+NDN P F + SV E
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 204 KSQV 207
+ V
Sbjct: 124 GTYV 127
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 187 bits (477), Expect = 6e-56
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 11/204 (5%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ N + Y+I P+G F ++ TG + LD E +LS A P+
Sbjct: 35 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 94
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRY 118
++ + + D+NDN P+F R SV E G + V A D+D NG + Y
Sbjct: 95 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 154
Query: 119 HLASGNFGD--SRLFAVDQTSGHLSLSKH-LDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
+ + + LF +++ +G +SL LD E +T+ V ATD +S +
Sbjct: 155 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 214
Query: 176 LEVQDVNDNPPVFERSEYFVSVSE 199
+++ D NDN P+F+ Y V E
Sbjct: 215 IQITDANDNAPIFDPKTYTALVPE 238
Score = 180 bits (458), Expect = 4e-53
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 17/205 (8%)
Query: 12 IRYTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
Y I + G+F + +S G++ TA LD E+ +L + P S
Sbjct: 263 AVYKI-RVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTS 321
Query: 64 YAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
A V VT+ED N+ P F R+ V E + G + ++VA+D D K+ Y + +
Sbjct: 322 TATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND 380
Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLLEVQ 179
+R V++ +G ++ + +LD E+ +T+++ TD G + T++L V
Sbjct: 381 P---ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 437
Query: 180 DVNDNPPVFERSEYFVSVSEALPAK 204
DVNDN PV + + P
Sbjct: 438 DVNDNGPVPSPRVFTMCDQNPEPQV 462
Score = 169 bits (429), Expect = 6e-49
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQAS-SGSPPLYSYA 65
+ Y+I DPE FT++ TGVI T LD E L+VQA+ L
Sbjct: 152 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 211
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIR-YHLASGN 124
+ + I D NDNAP F+ T VPE+ +G + + D D + + N
Sbjct: 212 KAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVN 270
Query: 125 FGDSRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQ---GDPPMSSNLTVLLE 177
+ F + + G L+ +K LD+E +++ + ++ + P +S TV +
Sbjct: 271 --EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVT 328
Query: 178 VQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
V+DVN+ P F + V VSE L ++
Sbjct: 329 VEDVNE-APFFVPAVSRVDVSEDLSRGEKI 357
Score = 152 bits (386), Expect = 8e-43
Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 16/189 (8%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL----LSVQAS-SGSPPL 61
Q + Y I + DP + T++ G++ LD E V + + + G
Sbjct: 368 QQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 426
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHL 120
+ + + D NDN P + + D D N + L
Sbjct: 427 TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSL 481
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ G+ D A + G L ++I V +D + P + + V
Sbjct: 482 SHGS--DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCS 537
Query: 181 VNDNPPVFE 189
+
Sbjct: 538 CEGKAIKCQ 546
Score = 121 bits (305), Expect = 2e-31
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 78 APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQ 135
++ I++S E +V + K+ Y + + +F ++
Sbjct: 5 HHDWVIPPIKVSENERGPFPKR---LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEW 61
Query: 136 TSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFV 195
+G + +++ LD E ++ + A + P+ + + + V D NDN P F + +
Sbjct: 62 ETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRG 121
Query: 196 SVSEALPAKSQV 207
SV E + +QV
Sbjct: 122 SVREGVQPGTQV 133
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 187 bits (476), Expect = 1e-55
Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 11/207 (5%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ + Y+I P G F ++ TG ++ LD E +L A S +
Sbjct: 29 DKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAV 88
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRY 118
++ +T+ D+NDN PEF SV E A G + V A D D N I Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 119 HLASGN--FGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
+ S + +F V++ +G +S L+ LD E+ +T+VV A D +S+ +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 176 LEVQDVNDNPPVFERSEYFVSVSEALP 202
+ V+D+NDN PVF S Y V E
Sbjct: 209 ITVKDINDNAPVFNPSTYQGQVPENEV 235
Score = 179 bits (457), Expect = 5e-53
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 18/206 (8%)
Query: 12 IRYTIHSGDPEGYFTL--DSTT--GVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
YT+ DP+ F + D TT G+++TA LD E +L V+ + S
Sbjct: 257 AVYTV-VNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPS 315
Query: 64 YAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
A V V + D N+ AP F R+ VPE +G + + AR+ D+ + KI Y +
Sbjct: 316 TATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRD 374
Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQR-----HTIVVSATDQGDPPMSSNLTVLLEV 178
+ ++ +G + +D E ++ + ++ ATD G P + T+LL +
Sbjct: 375 T---ANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVL 431
Query: 179 QDVNDNPPVFERSEYFVSVSEALPAK 204
DVNDN P+ E P
Sbjct: 432 LDVNDNAPIPEPRNMQFCQRNPQPHI 457
Score = 176 bits (448), Expect = 1e-51
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRTA-ATLDHEVTGVLLLSVQAS-SGSPPLYSYA 65
I YTI S DPE FT++ TGVI + LD E L VQA+ L + A
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG--KIRYHLASG 123
+ +T++D NDNAP F +T + VPE+ + + T+ D D+ + K Y + +
Sbjct: 206 KAVITVKDINDNAPVFNPSTYQGQVPENE-VNARIATLKVTDDDAPNTPAWKAVYTVVND 264
Query: 124 NFGDSRLFAVDQT-SGHLSLSKHLDYETSQRHTIVVSATDQG---DPPMSSNLTVLLEVQ 179
+ T G L +K LD+E Q++ + V ++ + S TV ++V
Sbjct: 265 PDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVV 324
Query: 180 DVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
DVN+ P+F +E V V E ++ +
Sbjct: 325 DVNE-APIFMPAERRVEVPEDFGVGQEITS 353
Score = 159 bits (403), Expect = 4e-45
Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 16/194 (8%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL-----LSVQAS-SGSPP 60
I Y I D + ++ TG I T A +D E + + A+ GSP
Sbjct: 362 FMDQKITYRIWR-DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPI 420
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYH 119
+ + + D NDNAP E + + + + D D N
Sbjct: 421 ATGTGTLLLVLLDVNDNAPIPEPRNM--QFCQRNPQP---HIITILDPDLPPNTSPFTAE 475
Query: 120 LASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ 179
L G + + + + + + I + D + + L V V
Sbjct: 476 LTHGA-SVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDV--HVC 532
Query: 180 DVNDNPPVFERSEY 193
D ++ +
Sbjct: 533 DCEGTVNNCMKAHH 546
Score = 118 bits (298), Expect = 2e-30
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
+S PE+ P +V + K+ Y + +F +++ +G L +++
Sbjct: 7 ISCPENEKGEFPKN-LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
LD E ++ + A + + +++ V D NDN P F + + SV+E +
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 206 QV 207
V
Sbjct: 126 SV 127
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 191 bits (486), Expect = 1e-55
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 11/207 (5%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ N + Y+I P+G F ++ TG + LD E +LS A P+
Sbjct: 184 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 243
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRY 118
++ + + D+NDN P+F R SV E G + V A D+D NG + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 119 HLASGN--FGDSRLFAVDQTSGHLSLSKH-LDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
+ + LF +++ +G +SL LD E +T+ V ATD +S +
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAI 363
Query: 176 LEVQDVNDNPPVFERSEYFVSVSEALP 202
+++ D NDN P+F+ Y V E
Sbjct: 364 IQITDANDNAPIFDPKTYTALVPENEI 390
Score = 177 bits (451), Expect = 7e-51
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 17/205 (8%)
Query: 12 IRYTIHSGDPEGYFTL----DSTTGVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
Y I + G+F + +S G++ TA LD E+ +L + P S
Sbjct: 412 AVYKI-RVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTS 470
Query: 64 YAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
A V VT+ED N+ P F R+ V E + G + ++VA+D D K+ Y + +
Sbjct: 471 TATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND 529
Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLLEVQ 179
+R V++ +G ++ + +LD E+ +T+++ TD G + T++L V
Sbjct: 530 P---ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL 586
Query: 180 DVNDNPPVFERSEYFVSVSEALPAK 204
DVNDN PV + + P
Sbjct: 587 DVNDNGPVPSPRVFTMCDQNPEPQV 611
Score = 171 bits (434), Expect = 2e-48
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIRTAAT-LDHEVTGVLLLSVQAS-SGSPPLYSYA 65
+ Y+I DPE FT++ TGVI T LD E L+VQA+ L
Sbjct: 301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 360
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLA-SGN 124
+ + I D NDNAP F+ T VPE+ +G + + D D + N
Sbjct: 361 KAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVN 419
Query: 125 FGDSRLFAV----DQTSGHLSLSKHLDYETSQRHTIVVSATDQ---GDPPMSSNLTVLLE 177
+ F + + G L+ +K LD+E +++ + ++ + P +S TV +
Sbjct: 420 --EGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVT 477
Query: 178 VQDVNDNPPVFERSEYFVSVSEALPAKSQVRT 209
V+DVN+ P F + V VSE L ++ +
Sbjct: 478 VEDVNE-APFFVPAVSRVDVSEDLSRGEKIIS 508
Score = 150 bits (381), Expect = 2e-41
Identities = 31/201 (15%), Positives = 58/201 (28%), Gaps = 16/201 (7%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL----LSVQAS-SGSPPL 61
Q + Y I + DP + T++ G++ LD E V + + + G
Sbjct: 517 QQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVG 575
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNG-KIRYHL 120
+ + + D NDN P + + D D N + L
Sbjct: 576 TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSL 630
Query: 121 ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ G+ D A + G L ++I V +D + P + + V
Sbjct: 631 SHGS--DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCS 686
Query: 181 VNDNPPVFERSEYFVSVSEAL 201
+ +
Sbjct: 687 CEGKAIKCQEKLVGGFDLPII 707
Score = 131 bits (330), Expect = 1e-34
Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 26/229 (11%)
Query: 1 MKILLLDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPP 60
K+ D + GD F + G + + +S + G
Sbjct: 58 GKVNFSDCTTRKHGLYDVGDS--RFRVLPD-GTVLVKRHVKLHKDTKFTISTWDARGIKH 114
Query: 61 LYSY---------------AQVKVTIEDRNDNAPEF-----ESTTIRLSVPESAALGLPL 100
+ K+ + + + + V E+ P
Sbjct: 115 STNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPK 174
Query: 101 YTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKHLDYETSQRHTIVV 158
+V + K+ Y + + +F ++ +G + +++ LD E ++ +
Sbjct: 175 R-LVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSS 233
Query: 159 SATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
A + P+ + + + V D NDN P F + + SV E + +QV
Sbjct: 234 HAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV 282
Score = 92.2 bits (229), Expect = 4e-21
Identities = 25/168 (14%), Positives = 40/168 (23%), Gaps = 17/168 (10%)
Query: 55 SSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPE-SAALGLPLYTVVARDKDSGDN 113
L V D + P F S SV G L V D
Sbjct: 11 VWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT--TR 68
Query: 114 GKIRYHLASGNF------GDSRLFAVDQTSGHL-SLSKHLDYETSQRHTIVVSATDQGDP 166
Y + F V ++S I V++
Sbjct: 69 KHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSG 128
Query: 167 PMSSNLTVLLEVQDVNDNPPVFERSE-------YFVSVSEALPAKSQV 207
+ + + L V + +R + VS +E P ++
Sbjct: 129 EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRL 176
Score = 53.7 bits (129), Expect = 3e-08
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 11 PIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKV 69
P + ++ G + + G + G + V S + + P + V
Sbjct: 625 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTV--VNA 682
Query: 70 TIEDRNDNAPEFESTTIRLSVPESAALGL 98
T+ A + + + + L
Sbjct: 683 TVCSCEGKAIKCQEKLVGGFDLPIILVIL 711
Score = 51.8 bits (124), Expect = 1e-07
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 159 SATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSE 199
+A+ + V DV+ P F +EY SV+
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNR 48
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 176 bits (448), Expect = 8e-54
Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 26/217 (11%)
Query: 12 IRYTIHSGDPEGYFTL--------DSTTGVIRTAATLDHE------VTGVLLLSVQAS-S 56
+ + + F + T G +R D+E ++ +
Sbjct: 22 SVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 81
Query: 57 GSPPLYSYAQVKVTIEDRNDNAPEFESTTIRL--SVPESAALGLPLYTVVARDKDSGDNG 114
+V + ++D ND P F + + + V +A P++T+ ARD D+ N
Sbjct: 82 AGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN- 140
Query: 115 KIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPP----MSS 170
I Y + G F VD+ SG + ++ + + V A DQ S
Sbjct: 141 -IHYFIVRDRTGG--RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQS 197
Query: 171 NLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
L + P F Y + E S +
Sbjct: 198 TPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 233
Score = 167 bits (424), Expect = 3e-50
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 6 LDQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPP---- 60
D + I Y I G F +D +GV+RT T ++ +L V+A
Sbjct: 135 PDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194
Query: 61 LYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL 120
S + +++I AP+F + +PE+ + ++ A+ + +IRY L
Sbjct: 195 FQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS---FADREIRYTL 250
Query: 121 -ASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSATDQGDPPMSSNLTVLL 176
A G + F + TSG + L+K LD+E ++ ++++V+AT+ S+++ + +
Sbjct: 251 KAQGQ--GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTI 307
Query: 177 EVQDVNDN 184
V DVNDN
Sbjct: 308 RVTDVNDN 315
Score = 103 bits (259), Expect = 4e-26
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 14/125 (11%)
Query: 97 GLPLYTVVARDKDSGDNGKIRYHLASGNFG------DSRLFAVDQTSGHLSLSKHLDYET 150
P + + D GK + L D + +T+G + + K DYE
Sbjct: 3 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEE 62
Query: 151 SQRHT------IVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE--YFVSVSEALP 202
I+ + + N V++ V+DVND PP F V P
Sbjct: 63 LGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAP 122
Query: 203 AKSQV 207
+ V
Sbjct: 123 PNTPV 127
Score = 78.6 bits (194), Expect = 5e-17
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 7 DQSN-PIRYTI-HSGDPEGYFTLDSTTGVIRTAATLDHEVT---GVLLLSVQASSGSPPL 61
++ IRYT+ G G F + T+G+++ A LD E V L V A+ S
Sbjct: 240 SFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF 299
Query: 62 YSYAQVKVTIEDRNDNA 78
+ + + + D NDNA
Sbjct: 300 STSVDLTIRVTDVNDNA 316
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 177 bits (452), Expect = 3e-53
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-----SGSPPLYSYAQ 66
I Y I G F +D +GV+RT T ++ +L V+A S +
Sbjct: 146 IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPE 205
Query: 67 VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHL-ASGNF 125
+++I AP+F + +PE+ + ++ A+ + +IRY L A G
Sbjct: 206 ERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQ- 260
Query: 126 GDSRLFAVDQTSGHLSLSKHLDYETSQR---HTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
+ F + TSG + L+K LD+E ++ ++++V+AT+ S+++ + + V DVN
Sbjct: 261 -GAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVN 318
Query: 183 DNPPVFERSEYFV-SVSEALPAKSQV 207
DN P FE +Y +V E +P + +
Sbjct: 319 DNAPKFELPDYQAHNVDEDIPLGTSI 344
Score = 166 bits (423), Expect = 4e-49
Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 24/211 (11%)
Query: 12 IRYTIHSGDPEGYFTLD--------STTGVIRTAATLDHEVTGVL------LLSVQAS-S 56
+ + + F + T G +R D+E G ++ +
Sbjct: 27 SVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 86
Query: 57 GSPPLYSYAQVKVTIEDRNDNAPEFESTTI--RLSVPESAALGLPLYTVVARDKDSGDNG 114
+V + ++D ND P F + + + V +A P++T+ ARD D+ N
Sbjct: 87 AGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN- 145
Query: 115 KIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTV 174
I Y + G F VD+ SG + ++ + + V A DQ
Sbjct: 146 -IHYFIVRDRTGG--RFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQS 202
Query: 175 LLEVQ---DVNDNPPVFERSEYFVSVSEALP 202
E + P F Y + E
Sbjct: 203 TPEERLSIVGGKRAPQFYMPSYEAEIPENQK 233
Score = 161 bits (409), Expect = 5e-47
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 9 SNPIRYTIH-SGDPEGYFTLDSTTGVIRTAATLDHEVTGVLL---LSVQASSGSPPLYSY 64
IRYT+ G G F + T+G+++ A LD E L V A+ S +
Sbjct: 248 DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS 307
Query: 65 AQVKVTIEDRNDNAPEFESTTIRL-SVPESAALGLPLYTVVARDKDSGDNGKIRYHLASG 123
+ + + D NDNAP+FE + +V E LG + V A D DSG N +I Y ++
Sbjct: 308 VDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD 367
Query: 124 NFGDSRLFAVDQTSGHLSLSKHLDYETSQ-RHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+ FAVD G + +K LD + + + +V+A D+G+PP S TV + ++
Sbjct: 368 H------FAVDSN-GIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 108 bits (271), Expect = 4e-27
Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 17/132 (12%)
Query: 90 VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD------SRLFAVDQTSGHLSLS 143
V + P + + D GK + L + + +T+G + +
Sbjct: 4 VTRAVR---PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60
Query: 144 KHLDYETSQR------HTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE--YFV 195
K DYE I+ + + N V++ V+DVND PP F
Sbjct: 61 KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120
Query: 196 SVSEALPAKSQV 207
V P + V
Sbjct: 121 VVQLNAPPNTPV 132
Score = 55.4 bits (134), Expect = 5e-09
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHE-VTGVLLLSVQAS-SGSPPLYSYAQVKV 69
I Y + +F +DS G+I LD + V A G PP A V+V
Sbjct: 360 IEYLVSDD----HFAVDSN-GIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRV 414
Query: 70 TIEDR 74
+++
Sbjct: 415 YTKNK 419
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 167 bits (425), Expect = 1e-51
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 12/187 (6%)
Query: 8 QSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSP-PLYSYA 65
I+Y + F +D +G I TLD E L QA + PL +
Sbjct: 32 GDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPS 91
Query: 66 QVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLAS 122
+ V ++D NDN PEF +VPE + +G + V A D D G++ K+ Y +
Sbjct: 92 EFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILE 151
Query: 123 GNFGDSRLFAVDQTSGHLSLS-KHLDYETSQRHTIVVSATDQGD--PPMSSNLTVLLEVQ 179
G F+V+ +G + + ++D E + + +V+ A D G +S V + +
Sbjct: 152 GQ----PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLT 207
Query: 180 DVNDNPP 186
D +
Sbjct: 208 DDYKDDD 214
Score = 117 bits (294), Expect = 4e-32
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 90 VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
+ E L + D DSG +G I+Y L+ G +F +D SG++ +K LD E
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGT--IFVIDDKSGNIHATKTLDRE 67
Query: 150 TSQRHTIVVSATDQGDP-PMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
++T++ A D+ P+ +++VQD+NDNPP F Y +V E + V
Sbjct: 68 ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSV 126
Score = 74.6 bits (184), Expect = 3e-16
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAA-TLDHEVTGVLLLSVQAS---SGSPPLYSYAQV 67
+ Y+I G P YF++++ TG+IRTA +D E + +QA L +V
Sbjct: 145 LVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKV 202
Query: 68 KVTIEDRNDNAPE 80
+T+ D + +
Sbjct: 203 TITLTDDYKDDDK 215
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 163 bits (414), Expect = 4e-50
Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 10/180 (5%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSY 64
+ Y I F + G I LD E L+ + L
Sbjct: 28 VGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPP 87
Query: 65 AQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLA 121
++ + + D NDNAP F SVPE + LG + V A D D + + Y +
Sbjct: 88 SKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII 147
Query: 122 SGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQD 180
GN F VD + + LD E+ + I+V A D G SS TV++ + D
Sbjct: 148 KGN----EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 120 bits (304), Expect = 9e-34
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 87 RLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHL 146
R+ + E LP V + S N Y + + +F V G + + L
Sbjct: 6 RMHIREEIDSPLP--HHVGKLTSSVGNKNAMYIIEGESANT--IFKVQGYDGDIYAFERL 61
Query: 147 DYETSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
D E + + D+ + + +++V D+NDN P+F + + SV E +
Sbjct: 62 DREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGT 121
Query: 206 QV 207
V
Sbjct: 122 SV 123
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 158 bits (401), Expect = 4e-48
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ + Y+I P G F ++ TG ++ LD E +L A S +
Sbjct: 29 DKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAV 88
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSG---DNGKIRY 118
++ +T+ D+NDN PEF SV E A G + V A D D N I Y
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148
Query: 119 HLASGN--FGDSRLFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVL 175
+ S + +F V++ +G +S L+ LD E+ +T+VV A D +S+ +
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAV 208
Query: 176 LEVQD 180
+ V+D
Sbjct: 209 ITVKD 213
Score = 123 bits (310), Expect = 2e-34
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 86 IRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQTSGHLSLS 143
+S PE+ P +V + K+ Y + +F +++ +G L ++
Sbjct: 5 AAISCPENEKGEFPK-NLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63
Query: 144 KHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPA 203
+ LD E ++ + A + + +++ V D NDN P F + + SV+E
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 204 KSQV 207
+ V
Sbjct: 124 GTSV 127
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 157 bits (399), Expect = 2e-47
Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 34/212 (16%)
Query: 9 SNPIRYTIHS-----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-------- 55
S + ++ + + TG++ +LDH L + +
Sbjct: 37 SFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLK 96
Query: 56 -------SGSPPLYSYAQVKVTIEDRNDNAPE----------FESTTIRLSVPESAALGL 98
+V N + P F T + E+ G
Sbjct: 97 VFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGT 156
Query: 99 PLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVV 158
+ + + Y L G + F S +S LD E +++ +V
Sbjct: 157 FHQFRLLPVQFLCPQISVAYRLLEG---EGLPFRSAPDSLEVSTRWALDREQREKYELVA 213
Query: 159 SATDQ-GDPPMSSNLTVLLEVQDVNDNPPVFE 189
T G + + V D +D+ P FE
Sbjct: 214 VCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 91.9 bits (228), Expect = 2e-22
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 29/156 (18%)
Query: 81 FESTTIRLSVPESAALGLPLYTVVA--RDKDSGDNGKIRYHLASGNF---GDSRLFAVDQ 135
F + A G PL V A + + ++ HL ++ + +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 136 TSGHLSLSKHLDYETSQRHT--------------IVVSATDQGDPPMSSNLTVLLEVQDV 181
+G L L + LD+ + ++ + + +S T + +
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 182 NDNPPV----------FERSEYFVSVSEALPAKSQV 207
N + P F + + E P +
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFH 158
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 155 bits (395), Expect = 3e-47
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D++ +RY++ P G F ++ +G + LD E+ L A +
Sbjct: 29 DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 62 YSYAQVKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYH 119
+ + + + D NDN PEF SVPE + G + TV A D D + NG +RY
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148
Query: 120 LASGN--FGDSRLFAVDQTSGHL-SLSKHLDYETSQRHTIVVSATDQGDPP---MSSNLT 173
+ S +F ++ +G + +++ LD E Q++T+++ ATD P +S+ T
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTAT 208
Query: 174 VLLEVQD 180
++ V D
Sbjct: 209 AVITVTD 215
Score = 122 bits (309), Expect = 2e-34
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQTSGHLSLSKH 145
+++PE++ P +V D N +RY + +F ++ SG LS++K
Sbjct: 7 INLPENSRGPFPQE-LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
LD E R + A D + + + +++ V D+NDN P F + SV E +
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 206 QV 207
V
Sbjct: 126 YV 127
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 153 bits (388), Expect = 4e-46
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 9 SNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSYAQ 66
++Y + F ++ TG I+ LD E V +L QA P+ ++
Sbjct: 32 DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESE 91
Query: 67 VKVTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDS---GDNGKIRYHLASG 123
+ I D NDN P F +VPE A +G + V A D D G++ K+ Y + G
Sbjct: 92 FIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151
Query: 124 NFGDSRLFAVDQTSGHLSL-SKHLDYETSQRHTIVVSATDQGDP--PMSSNLTVLLEVQD 180
F+V+ +G + ++D E +++ +V+ A D G +S TV + + D
Sbjct: 152 Q----PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 117 bits (296), Expect = 2e-32
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 90 VPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYE 149
+ E + D+D G +G ++Y L+ GD LF +++ +G + +K LD E
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGD--LFIINENTGDIQATKRLDRE 66
Query: 150 TSQRHTIVVSATDQGD-PPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
+ + A ++ P+ ++++ D+NDN P+F + Y +V E + V
Sbjct: 67 EKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 149 bits (379), Expect = 9e-45
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
+ DP+G F ++ TG + TLD E L V+ + + L ++V
Sbjct: 38 LTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVI 97
Query: 71 IEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKD--SGDNGKIRYHLASGN--FG 126
+ D+NDN P F V E + G + + A D D + DN +RY++
Sbjct: 98 VIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKP 157
Query: 127 DSRLFAVDQTSGHLSL---SKHLDYETSQ--RHTIVVSATDQG--DPPMSSNLTVLLEVQ 179
+F +D G + LD ET + ++ +++ A D D ++ T + +
Sbjct: 158 SPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVID 217
Query: 180 D 180
D
Sbjct: 218 D 218
Score = 122 bits (307), Expect = 5e-34
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 88 LSVPES--AALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
+ +PE+ + VV D+ G ++ + F +++ +G +S+++
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQD--PKGTFRINENTGSVSVTRT 65
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKS 205
LD ET + + V TD + + + + V D NDN P+F Y V E P +
Sbjct: 66 LDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGT 125
Query: 206 QV 207
V
Sbjct: 126 TV 127
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 143 bits (362), Expect = 2e-43
Identities = 42/118 (35%), Positives = 62/118 (52%)
Query: 69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS 128
+ NDN+P FE + + E++A G P+ + A D D G NG+I Y +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 129 RLFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
RL +D+TSG LS+ +D E + V A D+G PP + TV+L ++D NDN P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 74.4 bits (184), Expect = 4e-17
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 12 IRYTIHSGDPE--GYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVK 68
I Y + LD T+G + +D E L +V A G PP A V
Sbjct: 49 IEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVV 108
Query: 69 VTIEDRNDNAP 79
+ I+D NDN P
Sbjct: 109 LNIKDENDNVP 119
Score = 49.4 bits (119), Expect = 5e-08
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 177 EVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
NDN P FE+S Y ++E + +
Sbjct: 3 SGSSGNDNSPRFEKSVYEADLAENSAPGTPI 33
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 120 bits (303), Expect = 1e-34
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 69 VTIEDRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS 128
+ NDN P F+ + + +PE+A +G + + A D D G N +IRY + +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 129 R-LFAVDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVN 182
+ LFA++ T+G +++ + LD E + H + V A+D P + TV + V DVN
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARA--TVTINVTDVN 114
Score = 50.9 bits (123), Expect = 1e-08
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 12 IRYTIHSGDPEG---YFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQV 67
IRY + F L++TTG+I +LD E T + ++V AS S P + A V
Sbjct: 49 IRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTP--ARATV 106
Query: 68 KVTIEDRN 75
+ + D N
Sbjct: 107 TINVTDVN 114
Score = 49.4 bits (119), Expect = 5e-08
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 177 EVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
NDN PVF+ + V + E P + V
Sbjct: 3 SGSSGNDNRPVFKEGQVEVHIPENAPVGTSV 33
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 111 bits (280), Expect = 3e-31
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 78 APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQ 135
++ I ++PE++ P +V N +RY + + +F ++
Sbjct: 1 GSDWVIPPI--NLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINP 57
Query: 136 TSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVF 188
SG LS++K LD E R + A D + + + +++ V D+NDN P F
Sbjct: 58 ISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 81.2 bits (201), Expect = 9e-20
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D++ +RY++ P G F ++ +G + LD E+ L A +
Sbjct: 31 DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 90
Query: 62 YSYAQVKVTIEDRNDNAPEF 81
+ + + + D NDN PEF
Sbjct: 91 ENPIDIVINVIDMNDNRPEF 110
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 102 bits (255), Expect = 2e-27
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 84 TTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQTSGHLS 141
+ L E + P+ + + D KI Y + +F ++ +G L+
Sbjct: 15 APVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 142 LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFER 190
++ LD E + + A D + L + ++V D+NDN PVF +
Sbjct: 74 VTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 80.1 bits (198), Expect = 4e-19
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 7 DQSNPIRYTIH----SGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
++ I Y + P G F + TG + + LD E T LL+ A + +
Sbjct: 41 ERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNV 100
Query: 62 YSYAQVKVTIEDRNDNAPEFE 82
++++ + D NDN P F
Sbjct: 101 EKPLELRIKVLDINDNEPVFT 121
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 88.6 bits (220), Expect = 1e-22
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 78 APEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSR--LFAVDQ 135
P +S PE+ P +V + GK+ Y + +F +++
Sbjct: 1 GPLGSWVIPPISCPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59
Query: 136 TSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+G L +++ LD E +T+ A + + +L+ V D
Sbjct: 60 ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 59.7 bits (145), Expect = 8e-12
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 7 DQSNPIRYTIHSG----DPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ + Y+I P G F ++ TG ++ LD E L A S +
Sbjct: 33 DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAV 92
Query: 62 YSYAQVKVTIED 73
++ +T+ D
Sbjct: 93 EDPMEILITVTD 104
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 87.4 bits (217), Expect = 4e-22
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 88 LSVPESAALGLP--LYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
+S+PE+ + P + VV D+ G K+ +F +++ SG +S++K
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKG--IFKINENSGEVSVTKA 64
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
LD E + + V TD+ + + + + V D
Sbjct: 65 LDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 60.8 bits (148), Expect = 3e-12
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
+ +P+G F ++ +G + LD E L V+ + + +++
Sbjct: 37 LYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEIL 96
Query: 71 IED 73
+ D
Sbjct: 97 VID 99
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 86.3 bits (214), Expect = 1e-21
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 88 LSVPE--SAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
+ +PE + VV D+ G ++ + F +++ +G +S+++
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG--TFRINENTGSVSVTRT 65
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
LD ET + + V TD + + + + V D
Sbjct: 66 LDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 62.0 bits (151), Expect = 1e-12
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
+ DP+G F ++ TG + TLD E L V+ + + L ++V
Sbjct: 38 LTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVI 97
Query: 71 IED 73
+ D
Sbjct: 98 VID 100
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 79.4 bits (196), Expect = 4e-19
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 88 LSVPESAALGLPLY--TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKH 145
+ +PE+ P V+ + G ++ + +F +++ SG +S+++
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQD--PKGIFRINEISGDVSVTRP 64
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
LD E + + V TD + + + + V D
Sbjct: 65 LDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 60.9 bits (148), Expect = 3e-12
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 12 IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPLYSYAQVKVT 70
+ DP+G F ++ +G + LD E L V+ + + ++ ++
Sbjct: 37 LSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDIS 96
Query: 71 IED 73
+ D
Sbjct: 97 VID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 75.5 bits (186), Expect = 1e-17
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 88 LSVPESAALGLPLY-TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHL 146
V E PLY + D D G +G I+Y L+ G +F +D T+G + + L
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGI--VFTIDDTTGDIHAIQRL 64
Query: 147 DYETSQRHTIVVSATDQG-DPPMSSNLTVLLEVQD 180
D E ++T+ A D+ PM ++++QD
Sbjct: 65 DREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 59.7 bits (145), Expect = 8e-12
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 6 LDQSNP-IRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLY 62
+D+ + I+Y + FT+D TTG I LD E L QA P+
Sbjct: 29 MDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPME 88
Query: 63 SYAQVKVTIED 73
++ + I+D
Sbjct: 89 PESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 73.2 bits (180), Expect = 7e-17
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 88 LSVPESAALGLPLY-TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHL 146
+ V E + P+ + D D G + KI+Y L+ G +F ++ +G + K L
Sbjct: 7 MFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGT--IFQINDITGDIHAIKRL 63
Query: 147 DYETSQRHTIVVSATDQ-GDPPMSSNLTVLLEVQD 180
D E +T+ A D + P+ +++VQD
Sbjct: 64 DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 60.1 bits (146), Expect = 4e-12
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 7 DQSNPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQA--SSGSPPLYSY 64
S I+Y + F ++ TG I LD E L+ QA + PL
Sbjct: 30 PGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPP 89
Query: 65 AQVKVTIED 73
++ + ++D
Sbjct: 90 SEFIIKVQD 98
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 51.5 bits (124), Expect = 9e-09
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 34/127 (26%)
Query: 83 STTIRLSVPESAALGLPLYTVVAR-DKDSGDNGKIRYHLASGNF-----GDSRLFAVDQT 136
S TI SV E G ++V KD G + + L + G+ +L ++Q
Sbjct: 10 SATITYSVLEETDRG----SLVGNLAKDLGLSLR---ELITRGAQILSKGNKQLLQLEQK 62
Query: 137 SGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLE-----------VQDVNDNP 185
SG+L L + LD E T P + VLL+ +QDVND+
Sbjct: 63 SGNLLLKEKLDREELCGST----------NPCILHFQVLLKSPVQFIQGEIQLQDVNDHA 112
Query: 186 PVFERSE 192
P F E
Sbjct: 113 PEFMEDE 119
Score = 44.2 bits (105), Expect = 4e-06
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 16 IHSGDPEGYFTLDSTTGVIRTAATLDHEV----TGVLLLSVQASSGSPP-LYSYAQVKVT 70
I S + L+ +G + LD E T +L Q SP Q ++
Sbjct: 48 ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFI---QGEIQ 104
Query: 71 IEDRNDNAPEFESTTIRLSV 90
++D ND+APEF S
Sbjct: 105 LQDVNDHAPEFMEDESGPSS 124
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 41.0 bits (97), Expect = 3e-05
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 34/119 (28%)
Query: 83 STTIRLSVPESAALGLPLYTVVAR-DKDSGDNGKIRYHLASGNF-----GDSRLFAVDQT 136
++ I S+PE A G T V R +D G L F L V+
Sbjct: 2 NSQIHYSIPEEAKHG----TFVGRIAQDLGLELT---ELVPRLFRVASKDRGDLLEVNLQ 54
Query: 137 SGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLE-----------VQDVNDN 184
+G L ++ +D E + S +L V+++ V+D+NDN
Sbjct: 55 NGILFVNSRIDREELCGRS----------AECSIHLEVIVDRPLQVFHVEVEVRDINDN 103
Score = 33.7 bits (78), Expect = 0.012
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 16 IHSGDPEGYFTLDSTTGVIRTAATLDHEV----TGVLLLSVQASSGSPP-LYSYAQVKVT 70
+ S D ++ G++ + +D E + + ++ P ++ V+V
Sbjct: 40 VASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVF---HVEVE 96
Query: 71 IEDRNDN 77
+ D NDN
Sbjct: 97 VRDINDN 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 8e-05
Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 70/228 (30%)
Query: 19 GDPEGYF----TLDST-----TGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYA-QVK 68
G+ + YF L T +I+ +A L ++ + + +++ +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAET-------LSELIRTTLDAEKVFTQGLNIL 216
Query: 69 VTIEDRNDNAPEFE-STTIRLSVPESAALGLPLYTVVARDKDSGDN-GKIRYHL--ASG- 123
+E+ ++ P+ + +I +S P + L Y V A K G G++R +L A+G
Sbjct: 217 EWLENPSN-TPDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATGH 273
Query: 124 -----------------NFGDSRLFAVD----------QTSGHLSLSKHLDYETSQRHTI 156
+F S A+ + + SL + E S +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLEN-- 330
Query: 157 VVSATDQGDP-PMSS--NLT---VLLEVQDVNDNPPVFERSEYFVSVS 198
++G P PM S NLT V V N + P ++ V +S
Sbjct: 331 -----NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ----VEIS 369
Score = 41.6 bits (97), Expect = 3e-04
Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 67/220 (30%)
Query: 3 ILLLDQSNPIRYTIHSGDPEG------YFTL------DSTTGVIRTAATLDHEVTGVL-- 48
IL + +NP+ TIH G +G Y + D + ++ T
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 49 ----LLSV----QASSGSPPLY--SYAQVKVTIEDRNDNAPEFESTTIRLSVPESAAL-- 96
LLS Q P L A + ++ + P ++T S+ E AAL
Sbjct: 1721 SEKGLLSATQFTQ-----PALTLMEKAAFED-LKSKG-LIPA-DATFAGHSLGEYAALAS 1772
Query: 97 --G-LPL----YTVVARDKDSGDNGKIRYHLAS-GNFGDS--RLFAVDQTSGHLSLSKHL 146
+ + V R G G S + A++ S S
Sbjct: 1773 LADVMSIESLVEVVFYR-------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFS--- 1822
Query: 147 DYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPP 186
+ + ++ + G L+E+ VN N
Sbjct: 1823 --QEALQYVVERVGKRTGW---------LVEI--VNYNVE 1849
Score = 37.0 bits (85), Expect = 0.008
Identities = 39/246 (15%), Positives = 63/246 (25%), Gaps = 96/246 (39%)
Query: 42 HEVTGVLLL-------SVQASSGSP-PL-----YSYAQVKVTIEDRNDNAPEFESTTIRL 88
+E L S++ + G P P+ + QV+ + N
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS------------ 358
Query: 89 SVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGH---L-SLSK 144
+P + + L NG ++ V SG L L+
Sbjct: 359 HLPAGKQVEISLV-----------NG-------------AKNLVV---SGPPQSLYGLNL 391
Query: 145 HLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYF--VSV---SE 199
L R S DQ P S + F F V+ S
Sbjct: 392 TL------RKAKAPSGLDQSRIPFS-------------ERKLKFSNR--FLPVASPFHSH 430
Query: 200 AL-PAKSQVRTTCTPLYVLVEGQCSLVC-------WSTLRLMTHSTLKSELNSPLGSNSF 251
L PA + V + + S LR L ++ +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAK-DIQIPVYDTFDGSDLR-----VLSGSISERIVDCII 484
Query: 252 QLSILW 257
+L + W
Sbjct: 485 RLPVKW 490
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 37/308 (12%), Positives = 77/308 (25%), Gaps = 82/308 (26%)
Query: 5 LLDQSNPIRYTIHSGD------------PEGYFTLD--STTGVIRTAATLDHEVTGVLLL 50
D S+ I+ IHS L + +LL
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCK-ILLT 271
Query: 51 SVQASSGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSV--------PESAALGLPLY- 101
+ + + L + ++++ + E ++ L P P
Sbjct: 272 T-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 102 -TVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVSA 160
+ +D G + N+ KH++ + + TI+ S+
Sbjct: 331 SIIAESIRD----GLATW----DNW------------------KHVNCD--KLTTIIESS 362
Query: 161 TDQGDPPMSSNLTVLLEV--QDVNDNPPVFER-----SEYFV-SVSEALPAKSQV-RTTC 211
+ +P + L V + + + V V L S V +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 212 TPLYVLVEGQCSLVCWSTLRLMTHSTLKSELNSPLGSNSFQLSILW---YSIFLRTNTMQ 268
+ L H ++ N P +S L + Y
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--------- 473
Query: 269 IYRQFWYL 276
+ ++
Sbjct: 474 ----YSHI 477
Score = 33.7 bits (76), Expect = 0.080
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 37/145 (25%)
Query: 145 HLDYETSQRH----TIVVSATDQGDPPMSSNLTVLLEVQDVNDNP-PVFERSEYFVSVSE 199
H+D+ET + I+ + +DV D P + + E +
Sbjct: 6 HMDFETGEHQYQYKDIL--------SVFEDAFVDNFDCKDVQDMPKSILSKEE----IDH 53
Query: 200 ALPAKSQVRTTCTPLYVLVEGQCSLV---CWSTLR-----LMTHSTLKSELNSP-LGSNS 250
+ +K V T + L+ Q +V LR LM S +K+E P + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQRQPSMMTRM 111
Query: 251 F--QLSILWYSIFLRTNTMQIYRQF 273
+ Q L+ N Q++ ++
Sbjct: 112 YIEQRDRLY-------NDNQVFAKY 129
Score = 31.0 bits (69), Expect = 0.45
Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 61/221 (27%)
Query: 100 LYTVVARDKDSGDNG--KIRYHLASGNFGDSRLFAVDQTSGHLSL--------SKHLDYE 149
L + + S + I+ + S RL L +K +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAF 262
Query: 150 TSQRHTIV----VSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE---YFVSV----S 198
++ TD ++++++ + + E +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISL-------DHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 199 EALPAKSQVRTTCTPLYV------LVEGQCSLVCWSTLRLMTHST-LKSELNSPLGSNSF 251
+ LP +V TT P + + +G + W + +T ++S LN L +
Sbjct: 316 QDLP--REVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEY 371
Query: 252 Q-------------------LSILWYSIFLRTNTMQIYRQF 273
+ LS++W+ + ++++ M + +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKL 411
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.4 bits (73), Expect = 0.11
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 21/87 (24%)
Query: 138 GHLSLSKHLDYETSQRHTIVVSATDQGDPP----MSSNLTVLLEVQDVNDNPPVFERSEY 193
G + ++ ++Y + + V S PP +S LE+ D ++
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSG-----LELSDTKQKG-----KKF 163
Query: 194 FVSVSE-------ALPAKSQVRTTCTP 213
V E LP + +
Sbjct: 164 LVIAYEPFENIAIELPPNEILFSENND 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.17
Identities = 5/20 (25%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 80 EFESTTIRLSVPESA-ALGL 98
+ +++ ++L +SA AL +
Sbjct: 24 KLQAS-LKLYADDSAPALAI 42
>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain,
regulator of C activation, C3D, immune system; 1.52A
{Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A
3kzj_A 2xqw_C
Length = 129
Score = 28.4 bits (63), Expect = 1.2
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 184 NPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC----WS 228
PP + + S V C LY L G + C WS
Sbjct: 9 PPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLE-GNKRITCRNGQWS 56
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 29.3 bits (65), Expect = 1.7
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 169 SSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC-- 226
S +L + E PP E V C P +++ G + C
Sbjct: 599 SPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMK-GPNKIQCVD 657
Query: 227 --WSTL 230
W+TL
Sbjct: 658 GEWTTL 663
>2yby_A Complement factor H; immune system, complement regulation, innate
immunity, infec; 1.58A {Mus musculus}
Length = 124
Score = 27.1 bits (60), Expect = 3.3
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 193 YFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC----WST 229
+ ++ C Y L GQ ++ C WS
Sbjct: 78 DSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENGWSP 118
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 28.2 bits (62), Expect = 3.8
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 148 YETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSEYFVSVSEALPAKSQV 207
+ + ++ A + P + ++ P+ + ++ V
Sbjct: 102 FSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEC--PALPMIHNGHHTSENVGSIAPGLSV 159
Query: 208 RTTCTPLYVLVEGQCSLVC-----WS 228
+C Y+LV G+ + C WS
Sbjct: 160 TYSCESGYLLV-GEKIINCLSSGKWS 184
Score = 27.0 bits (59), Expect = 9.3
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 184 NPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC-----WS 228
PP + + +C Y+LV G+ L+C WS
Sbjct: 833 PPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLV-GEALLLCTHEGTWS 881
>3sw0_X H factor 1, complement factor H; innate immune response, sushi
domains, cofactor in the inact of C3B, C3B, human
plasma, immune system; 1.80A {Homo sapiens}
Length = 188
Score = 26.8 bits (59), Expect = 6.6
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 183 DNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC----WS 228
PP + + S V C LY L G + C WS
Sbjct: 67 GPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLE-GNKRITCRNGQWS 115
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane,
transmembrane, membrane; 2.25A {Drosophila melanogaster}
Length = 137
Score = 26.5 bits (59), Expect = 6.9
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 56 SGSPPLYSYAQVKVTIEDRNDNAPEFESTTIRLSVPESA 94
S L V I D +D+A F T + ES
Sbjct: 96 SEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV 133
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 119 HLASGNFGDSRLFAVDQTSGHLSLSKHLDYETS 151
+A+G+ LF D +G LS LD
Sbjct: 258 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 27.0 bits (59), Expect = 7.9
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 36 TAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKVTIE 72
+ +LL+++ + GSP LY+Y +V + ++
Sbjct: 402 QIPSNAGGKDIHILLTLRDN-GSPNLYAYRRVVINVQ 437
Score = 27.0 bits (59), Expect = 9.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 149 ETSQRHTIVVSATDQGDPPMSSNLTVLLEVQ 179
+ I+++ D G P + + V++ VQ
Sbjct: 407 AGGKDIHILLTLRDNGSPNLYAYRRVVINVQ 437
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 27.0 bits (60), Expect = 8.0
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 20/86 (23%)
Query: 7 DQSNPIRYTIHSG-DPEGYFTLDSTTGVIRTAATLDHEVTGVL--------LLSVQASSG 57
+ IR + D E Y L+ + V+ +A G LL A
Sbjct: 62 AREAGIRLLLDPSLDAEAY-RLEVSDAVVISAGG----AAGAFYGAQTLLQLLGPAALRQ 116
Query: 58 SPPLYSYAQV--KVTIEDRNDNAPEF 81
+P + +V++ED P F
Sbjct: 117 APVVAVEGWSVPRVSVED----KPRF 138
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 27.1 bits (59), Expect = 9.0
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 179 QDVNDNPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC-----WST 229
V PP E+ +S + +V +C P Y L G SL C WS
Sbjct: 1606 SRVCQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLR-GAASLHCTPQGDWSP 1660
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,960,525
Number of extensions: 219041
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 100
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)