RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11062
(281 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 79.3 bits (194), Expect = 2e-19
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 76 DNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVDQ 135
+ AP F R+ V E + G + ++VA+D D K+ Y + + V++
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR---WLTVNK 57
Query: 136 TSGHLSLSKHLDYETSQ----RHTIVVSATDQGDPPMSSNLTVLLEVQDV 181
+G ++ + +LD E+ +T+++ TD G + T++L V DV
Sbjct: 58 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 46.9 bits (110), Expect = 1e-07
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 10 NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEV----TGVLLLSVQAS-SGSPPLYSY 64
DP + T++ G++ LD E + + + G
Sbjct: 38 IQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGT 97
Query: 65 AQVKVTIED 73
+ + + D
Sbjct: 98 GTLILHVLD 106
Score = 34.2 bits (77), Expect = 0.004
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 183 DNPPVFERSEYFVSVSEALPAKSQVRTTCT 212
+ P F + V VSE L ++ +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVA 30
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 75.2 bits (184), Expect = 7e-18
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 79 PEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDS--RLFAVDQT 136
P +S PE+ P +V + GK+ Y + +F +++
Sbjct: 1 PLGSWVIPPISCPENEKGPFPK-NLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 137 SGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+G L +++ LD E +T+ A + + +L+ V D
Sbjct: 60 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 45.1 bits (106), Expect = 4e-07
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 7 DQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ + Y+I P G F ++ TG ++ LD E L A S +
Sbjct: 32 DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAV 91
Query: 62 YSYAQVKVTIED 73
++ +T+ D
Sbjct: 92 EDPMEILITVTD 103
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 74.8 bits (182), Expect = 1e-17
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD---NGKIRYHLASGN--FGDSR 129
NDN PEF SV E A G + V A D D N I Y + S +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 130 LFAVDQTSGHLSLSKHL-DYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
+F V++ +G +S+ D E+ +T+VV A D +S+ ++ V+D
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 38.6 bits (88), Expect = 1e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVRTTC 211
NDN P F + + SV+E + V
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVS 30
Score = 37.0 bits (84), Expect = 4e-04
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 11 PIRYTIHSGDPEG----YFTLDSTTGVIRTAATLDH-EVTGVLLLSVQAS-SGSPPLYSY 64
I YTI S DPE FT++ TGVI + E L VQA+ L +
Sbjct: 44 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 103
Query: 65 AQVKVTIED 73
A+ +T++D
Sbjct: 104 AKAVITVKD 112
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 72.9 bits (178), Expect = 4e-17
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGD--SRLFAVDQTSGHLSLSKH 145
+ V E+ P +V + K+ Y + + +F ++ +G + +++
Sbjct: 7 IKVSENERGPFPK-RLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
LD E ++ + A + P+ + + + V D
Sbjct: 66 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 46.7 bits (110), Expect = 1e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 7 DQSNPIRYTIHSGD----PEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D+ N + Y+I P+G F ++ TG + LD E +LS A P+
Sbjct: 29 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPV 88
Query: 62 YSYAQVKVTIED 73
++ + + D
Sbjct: 89 EEPMEITINVID 100
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 70.1 bits (170), Expect = 6e-16
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARD---KDSGDNGKIRYHLASG--NFGDSR 129
NDN P+F R SV E G + V A D NG + Y +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 130 LFAVDQTSGHLS-LSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
LF +++ +G +S + LD E +T+ V ATD +S ++++ D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 38.5 bits (88), Expect = 1e-04
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVRTTC-TPLYVLVEGQCSLVCWSTLRLMTHSTLKS 240
NDN P F + + SV E + +QV T ++ ++ +S L+ + +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Score = 37.3 bits (85), Expect = 3e-04
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 12 IRYTIHSGDPE----GYFTLDSTTGVIR-TAATLDHEVTGVLLLSVQAS-SGSPPLYSYA 65
+ Y+I DPE FT++ TGVI LD E L+VQA+ L
Sbjct: 46 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEG 105
Query: 66 QVKVTIED 73
+ + I D
Sbjct: 106 KAIIQITD 113
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 66.8 bits (162), Expect = 7e-15
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 88 LSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFG--DSRLFAVDQTSGHLSLSKH 145
+++PE++ P +V N +RY + + +F ++ SG LS++K
Sbjct: 9 INLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 146 LDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQD 180
LD E R + A D + + + +++ V D
Sbjct: 68 LDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 44.1 bits (103), Expect = 1e-06
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 7 DQSNPIRYTIHS----GDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQAS-SGSPPL 61
D++ +RY++ P G F ++ +G + LD E+ L A +
Sbjct: 31 DKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQV 90
Query: 62 YSYAQVKVTIED 73
+ + + + D
Sbjct: 91 ENPIDIVINVID 102
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 66.7 bits (161), Expect = 1e-14
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGD--NGKIRYHLASGN--FGDSRL 130
NDN PEF SVPE + G + TV A D D + NG +RY + S +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 131 FAVDQTSGHLSLSKHL-DYETSQRHTIVVSATDQGDPP---MSSNLTVLLEVQD 180
F ++ +G + D E Q++T+++ ATD P +S+ T ++ V D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 38.5 bits (88), Expect = 1e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVRTTC 211
NDN P F + SV E + V T
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVT 30
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 65.0 bits (157), Expect = 5e-14
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDK-DSGDNGKIRYHLASGNFGDSRLFAV 133
NDNAP F+ T VPE+ G + + D G + N G
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 134 DQTSG--HLSLSKHLDYETSQRHTIVVSATDQGD---PPMSSNLTVLLEVQDV 181
D S L+ +K LD+E +++ + ++ + P +S TV + V+DV
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 36.1 bits (82), Expect = 8e-04
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 182 NDNPPVFERSEYFVSVSEALP 202
NDN P+F+ Y V E
Sbjct: 2 NDNAPIFDPKTYTALVPENEI 22
Score = 30.7 bits (68), Expect = 0.059
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 12 IRYTIHSGDPEGYFTLD----STTGVIRTAATLDHEVTGVLLLSVQAS----SGSPPLYS 63
+ G+F + S G++ TA LD E+ +L + P S
Sbjct: 43 QAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTS 102
Query: 64 YAQVKVTIED 73
A V VT+ED
Sbjct: 103 TATVTVTVED 112
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 56.6 bits (135), Expect = 5e-11
Identities = 16/113 (14%), Positives = 26/113 (23%), Gaps = 8/113 (7%)
Query: 75 NDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFAVD 134
NDN P + + D D N S + A
Sbjct: 1 NDNGPVPSPRVFTMCDQNP-----EPQVLTISDADIPPNTYPYKVSLSHGSDLTW-KAEL 54
Query: 135 QTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPV 187
+ G L ++I V +D + P + + V
Sbjct: 55 DSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIK 105
Score = 33.5 bits (75), Expect = 0.007
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 182 NDNPPVFERSEYFVSVSEALPAKSQVR 208
NDN PV + + P +
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEPQVLTIS 27
Score = 25.8 bits (55), Expect = 3.1
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 10 NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVKV 69
P + ++ G + + G + G + V S V
Sbjct: 36 YPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNN-PQLTVVNA 94
Query: 70 TIEDRNDNAP 79
T+ A
Sbjct: 95 TVCSCEGKAI 104
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 55.8 bits (133), Expect = 2e-10
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 13/138 (9%)
Query: 73 DRNDNAPEFESTTIRLSVPESAALGLPLYTVVARDKDSGDNGKIRYHLASGNFGDSRLFA 132
+ F +P+ G PL V + + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFK------- 57
Query: 133 VDQTSGHLSLSKHLDYETSQRHTIVVSATDQGDPPMSSNLTVLLEVQDVNDNPPVFERSE 192
G + + ++ ++ A D+ V L + P+ E E
Sbjct: 58 -VDEDGTVYAVRSFPLTA-EQAKFLIYAQDKETQEKWQV-AVNLSREPTLTEEPMKEPHE 114
Query: 193 YFVSVSEALPAKSQVRTT 210
V P + +
Sbjct: 115 IEEIV---FPRQLAKHSG 129
>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 25.5 bits (55), Expect = 1.9
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 185 PPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLV-EGQCSLVC-----WSTL 230
PP FE E +V C Y + +C W +
Sbjct: 4 PPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPV 55
>d1quba4 g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 24.9 bits (54), Expect = 2.4
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 6/52 (11%)
Query: 184 NPPVFERSEYFVSVSEALPAKSQVRTTCTPLYVLVEGQCSLVC-----WSTL 230
P + L K + C Y L G + C WS +
Sbjct: 5 FPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLD-GPEEIECTKLGNWSAM 55
>d2q3na1 d.165.1.1 (A:2-248) Agglutinin-1 chain A {Abrus
precatorius [TaxId: 3816]}
Length = 247
Score = 26.0 bits (57), Expect = 5.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 10 NPIRYTIHSGDPEGYFTLDSTTGVIRTAATLDHEVTGVLLLSVQASSGSPPLYSYAQVK 68
+PI++T S P Y +R T + G+ +L ++ P Y ++
Sbjct: 1 DPIKFTTGSATPASYNQFIDA---LRERLT-GGLIYGIPVLRDPSTVEKPNQYVTVELS 55
>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
PAPL {Vaccinia virus [TaxId: 10245]}
Length = 468
Score = 26.3 bits (58), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 99 PLYTVVARDKDSGDNGKI 116
P+Y+ RDK G +G I
Sbjct: 442 PIYSHTERDKKPGRHGFI 459
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 26.0 bits (55), Expect = 6.5
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 120 LASGNFGDSRLFAVDQTSGHLSLSKHLDYETSQRHTIVVS 159
+A+G+ LF D +G LS LD + +
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 945,642
Number of extensions: 39218
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 31
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)