BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11065
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J4W|A Chain A, Complex Of The Kh3 And Kh4 Domains Of Fbp With A
Single_stranded 29mer Dna Oligonucleotide From The Fuse
Element Of The C-Myc Oncogene
Length = 174
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 65 DMIKKLQNETGARVQFVQMREDD--PSDRRCMLSGSPDQVQEARARIEELIDSV 116
+MIKK+QN+ G R+QF + DD +R ++G PD+ Q A I +L+ SV
Sbjct: 23 EMIKKIQNDAGVRIQF---KPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSV 73
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 65 DMIKKLQNETGARVQFVQMRED--DPSDRRCMLSGSPDQVQEARARIEELI 113
+ IK + ++GAR++ + DP+ + + G+P Q+ AR IEE I
Sbjct: 124 ETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174
>pdb|1X4N|A Chain A, Solution Structure Of Kh Domain In Fuse Binding Protein 1
Length = 92
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELID 114
+ I ++Q E+G ++Q P +R CML+G+P+ VQ A+ ++++++
Sbjct: 35 EQISRIQQESGCKIQIAPDSGGLP-ERSCMLTGTPESVQSAKRLLDQIVE 83
>pdb|4B8T|A Chain A, Rna Binding Protein Solution Structure Of The Third Kh
Domain Of Ksrp In Complex With The G-rich Target
Sequence
Length = 106
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116
+MIKK+QN+ G R+QF Q P ++ + G PD+ + A I +L+ S+
Sbjct: 31 EMIKKIQNDAGVRIQFKQDDGTGP-EKIAHIMGPPDRCEHAARIINDLLQSL 81
>pdb|2HH3|A Chain A, Solution Structure Of The Third Kh Domain Of Ksrp
Length = 106
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116
+MIKK+QN+ G R+QF Q P ++ + G PD+ + A I +L+ S+
Sbjct: 31 EMIKKIQNDAGVRIQFKQDDGTGP-EKIAHIMGPPDRCEHAARIINDLLQSL 81
>pdb|2JVZ|A Chain A, Solution Nmr Structure Of The Second And Third Kh Domains
Of Ksrp
Length = 164
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116
+MIKK+QN+ G R+QF Q P ++ + G PD+ + A I +L+ S+
Sbjct: 111 EMIKKIQNDAGVRIQFKQDDGTGP-EKIAHIMGPPDRCEHAARIINDLLQSL 161
>pdb|2Y7D|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7E|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7E|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7F|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7G|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
pdb|2Y7G|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
Length = 282
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 13/62 (20%)
Query: 73 ETGARVQFVQMREDD--PSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGA----NF 126
E GARV + +REDD PS R D+ QEA + I E++ ++++ +G +F
Sbjct: 45 EAGARVIHLHIREDDGRPSQRL-------DRFQEAISAIREVVPEIIIQISTGGAVGESF 97
Query: 127 DK 128
DK
Sbjct: 98 DK 99
>pdb|2HH2|A Chain A, Solution Structure Of The Fourth Kh Domain Of Ksrp
Length = 107
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 67 IKKLQNETGARVQFVQMRED--DPSDRRCMLSGSPDQVQEARARIEELID 114
+K + +TGA V+ + DP+ + ++ GSP Q+ A+ IEE I+
Sbjct: 29 VKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78
>pdb|1X4M|A Chain A, Solution Structure Of Kh Domain In Far Upstream Element
Binding Protein 1
Length = 94
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 65 DMIKKLQNETGARVQFVQMREDDP----SDRRCMLSGSPDQVQEARARIEELI 113
+ IK+LQ G ++ +Q D P +D+ ++G P +VQ+A+ + ELI
Sbjct: 35 ETIKQLQERAGVKMVMIQ---DGPQNTGADKPLRITGDPYKVQQAKEMVLELI 84
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 76 ARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEEL 112
AR++ V + +D +D+RCM S P+ Q+A+ R EL
Sbjct: 170 ARLRTVVLCDDGGTDQRCM-SPDPELAQKAQERRREL 205
>pdb|2PDB|A Chain A, Human Aldose Reductase Mutant F121p Complexed With
Zopolrestat.
pdb|2PDC|A Chain A, Human Aldose Reductase Mutant F121p Complexed With Idd393
Length = 316
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEPFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|3LZ5|A Chain A, Human Aldose Reductase Mutant T113v Complexed With Idd594
pdb|3M4H|A Chain A, Human Aldose Reductase Mutant T113v Complexed With Idd388
pdb|3M0I|A Chain A, Human Aldose Reductase Mutant T113v In Complex With
Zopolrestat
pdb|3M64|A Chain A, Human Aldose Reductase Mutant T113v Complexed With Idd393
pdb|3MC5|A Chain A, Human Aldose Reductase Mutant T113v In Complex With Idd393
Crystallized In Spacegroup P1
Length = 316
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 78 VQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANR 137
V F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 114 VGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNK 173
Query: 138 S 138
Sbjct: 174 P 174
>pdb|3RX2|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Sulindac Sulfone
pdb|3RX3|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Sulindac
pdb|3RX4|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Sulindac Sulfide
pdb|3S3G|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Tolmetin
pdb|3V35|A Chain A, Aldose Reductase Complexed With A Nitro Compound
pdb|3V36|A Chain A, Aldose Reductase Complexed With Glceraldehyde
pdb|3V9Q|A Chain A, Aldose Reductase Complexed With A Phenolic Compound
Length = 336
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 136 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 194
>pdb|3LBO|A Chain A, Human Aldose Reductase Mutant T113c Complexed With Idd594
pdb|3LEP|A Chain A, Human Aldose Reductase Mutant T113c In Complex With Idd388
Length = 316
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|1Z3N|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Lidorestat At 1.04 Angstrom
pdb|3G5E|A Chain A, Human Aldose Reductase Complexed With Idd 740 Inhibitor
pdb|3T42|A Chain A, Human Aldose Reductase In Complex With A
Nitrile-Containing Idd Inhibitor
Length = 319
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 119 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 177
>pdb|2PDQ|A Chain A, Human Aldose Reductase Mutant C303d Complexed With Uracil-
Type Inhibitor.
pdb|2PDU|A Chain A, Human Aldose Reductase Mutant C303d Complexed With Idd393.
pdb|2PDW|A Chain A, Human Aldose Reductase Mutant C303d Complexed With
Fidarestat
Length = 316
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|2ACU|A Chain A, Tyrosine-48 Is The Proton Donor And Histidine-110 Directs
Substrate Stereochemical Selectivity In The Reduction
Reaction Of Human Aldose Reductase: Enzyme Kinetics And
The Crystal Structure Of The Y48h Mutant Enzyme
Length = 315
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 115 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 173
>pdb|2PDI|A Chain A, Human Aldose Reductase Mutant L300a Complexed With
Zopolrestat At 1.55 A.
pdb|2PDJ|A Chain A, Human Aldose Reductase Mutant L300a Complexed With Idd393
Length = 316
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|1EF3|A Chain A, Fidarestat Bound To Human Aldose Reductase
pdb|1EF3|B Chain B, Fidarestat Bound To Human Aldose Reductase
pdb|2INE|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Phenylacetic Acid
pdb|2INZ|A Chain A, Crystal Structure Of Aldose Reductase Complexed With 2-
Hydroxyphenylacetic Acid
pdb|2IQ0|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Hexanoic Acid
pdb|2IQD|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Lipoic Acid
pdb|1ADS|A Chain A, An Unlikely Sugar Substrate Site In The 1.65 Angstroms
Structure Of The Human Aldose Reductase Holoenzyme
Implicated In Diabetic Complications
pdb|1MAR|A Chain A, Refined 1.8 Angstroms Structure Of Human Aldose Reductase
Complexed With The Potent Inhibitor Zopolrestat
pdb|2ACQ|A Chain A, An Anion Binding Site In Human Aldose Reductase:
Mechanistic Implications For The Binding Of Citrate,
Cacodylate, And Glucose-6-Phosphate
pdb|2ACR|A Chain A, An Anion Binding Site In Human Aldose Reductase:
Mechanistic Implications For The Binding Of Citrate,
Cacodylate, And Glucose-6- Phosphate
pdb|2ACS|A Chain A, An Anion Binding Site In Human Aldose Reductase:
Mechanistic Implications For The Binding Of Citrate,
Cacodylate, And Glucose-6-Phosphate
Length = 315
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 115 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 173
>pdb|2AGT|A Chain A, Aldose Reductase Mutant Leu 300 Pro Complexed With
Fidarestat
Length = 319
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 119 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 177
>pdb|2PDX|A Chain A, Human Aldose Reductase Double Mutant S302r-C303d Complexed
With Zopolrestat.
pdb|2PDY|A Chain A, Human Aldose Reductase Double Mutant S302r-C303d Complexed
With Fidarestat
Length = 316
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|2PDK|A Chain A, Human Aldose Reductase Mutant L301m Complexed With
Sorbinil.
pdb|2PDL|A Chain A, Human Aldose Reductase Mutant L301m Complexed With
Tolrestat
Length = 316
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|2PD5|A Chain A, Human Aldose Reductase Mutant V47i Complexed With
Zopolrestat
pdb|2PD9|A Chain A, Human Aldose Reductase Mutant V47i Complexed With
Fidarestat
Length = 316
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|1PWL|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Nadp And Minalrestat
pdb|1PWM|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Nadp And Fidarestat
pdb|1US0|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594 At 0.66 Angstrom
pdb|1T41|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Nadp And Idd552
pdb|1X96|A Chain A, Crystal Structure Of Aldose Reductase With Citrates Bound
In The Active Site
pdb|1X97|A Chain A, Crystal Structure Of Aldose Reductase Complexed With 2r4s
(Stereoisomer Of Fidarestat, 2s4s)
pdb|1X98|A Chain A, Crystal Structure Of Aldose Reductase Complexed With 2s4r
(Stereoisomer Of Fidarestat, 2s4s)
pdb|1Z89|A Chain A, Human Aldose Reductase Complexed With Novel Sulfonyl-
Pyridazinone Inhibitor
pdb|1Z8A|A Chain A, Human Aldose Reductase Complexed With Novel Sulfonyl-
Pyridazinone Inhibitor
pdb|2I16|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594 At Temperature Of 15k
pdb|2I17|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594 At Temperature Of 60k
pdb|2DUX|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Zopolrestat After 3 Days Soaking (3days_soaked_1)
pdb|2DUZ|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat After 3 Days Soaking (3days_soaked_2)
pdb|2DV0|A Chain A, Human Aldose Reductase Complexed With Zopolrestat After 6
Days Soaking(6days_soaked_2)
pdb|2FZ8|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat At 1.48 A(1 Day Soaking).
pdb|2FZ9|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat After Six Days Soaking.
pdb|2FZB|A Chain A, Human Aldose Reductase Complexed With Four Tolrestat
Molecules At 1.5 A Resolution.
pdb|2FZD|A Chain A, Human Aldose Reductase Complexed With Tolrestat At 1.08 A
Resolution.
pdb|2HV5|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat After Three Days Soaking (3days_soaked_3)
pdb|2HVN|A Chain A, Human Aldose Reductase-Zopolrestat Complex Obtained By
Cocrystallisation After One Day (1day_cocryst)
pdb|2HVO|A Chain A, Human Aldose Reductase-Zopolrestat Complex Obtained By
Cocrystallisation (10days_cocryst)
pdb|2IKG|A Chain A, Aldose Reductase Complexed With Nitrophenyl-Oxadiazol Type
Inhibitor At 1.43 A
pdb|2IKH|A Chain A, Human Aldose Reductase Complexed With Nitrofuryl-oxadiazol
Inhibitor At 1.55 A
pdb|2IKI|A Chain A, Human Aldose Reductase Complexed With Halogenated Idd-type
Inhibitor
pdb|2IKJ|A Chain A, Human Aldose Reductase Complexed With Nitro-Substituted
Idd- Type Inhibitor
pdb|2NVC|A Chain A, Human Aldose Reductase Complexed With Novel Naphtho[1,2-
D]isothiazole Acetic Acid Derivative (3)
pdb|2NVD|A Chain A, Human Aldose Reductase Complexed With Novel Naphtho[1,2-
D]isothiazole Acetic Acid Derivative (2)
pdb|2PEV|A Chain A, Complex Of Aldose Reductase With Nadp+ And Simaltaneously
Bound Competetive Inhibitors Fidarestat And Idd594.
Concentration Of Fidarestat In Soaking Solution Exceeds
Concentration Of Idd594.
pdb|2PF8|A Chain A, Complex Of Aldose Reductase With Nadp+ And Simaltaneously
Bound Competetive Inhibitors Fidarestat And Idd594.
Concentration Of Fidarestat In Soaking Solution Is Equal
To Concentration Of Idd594.
pdb|2PFH|A Chain A, Complex Of Aldose Reductase With Nadp+ And Simaltaneously
Bound Competetive Inhibitors Fidarestat And Idd594.
Concentration Of Fidarestat In Soaking Solution Is Less
Than Concentration Of Idd594.
pdb|2J8T|A Chain A, Human Aldose Reductase In Complex With Nadp And Citrate At
0.82 Angstrom
pdb|2QXW|A Chain A, Perdeuterated Alr2 In Complex With Idd594
pdb|2PDG|A Chain A, Human Aldose Reductase With Uracil-Type Inhibitor At
1.42a.
pdb|3BCJ|A Chain A, Crystal Structure Of Aldose Reductase Complexed With 2s4r
(Stereoisomer Of Fidarestat, 2s4s) At 0.78 A
pdb|2PZN|A Chain A, The Crystallographic Structure Of Aldose Reductase Idd393
Complex Confirms Leu300 As A Specificity Determinant
pdb|3GHR|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. First Stage Of
Radiation Damage
pdb|3GHS|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. Second Stage Of
Radiation Damage.
pdb|3GHT|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. Third Stage Of
Radiation Damage.
pdb|3GHU|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. Forth Stage Of
Radiation Damage.
pdb|3DN5|A Chain A, Aldose Reductase In Complex With Novel Biarylic Inhibitor
pdb|3Q65|A Chain A, Human Aldose Reductase In Complex With Nadp+ In Space
Group P212121
pdb|3Q65|B Chain B, Human Aldose Reductase In Complex With Nadp+ In Space
Group P212121
pdb|3P2V|A Chain A, Novel Benzothiazepine Inhibitor In Complex With Human
Aldose Reductase
pdb|3U2C|A Chain A, Aldose Reductase In Complex With Nsaid-Type Inhibitor At
1.0 A Resolution
Length = 316
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|3ONB|A Chain A, Bond Breakage And Relocation Of A Covalently Bound Bromine
Of Idd594 In A Complex With Har T113a Mutant After
Extensive Radiation Dose
pdb|3ONC|A Chain A, Bond Breakage And Relocation Of A Covalently Bound Bromine
Of Idd594 In A Complex With Har T113a Mutant After
Moderate Radiation Dose
Length = 315
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 115 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 173
>pdb|3LQG|A Chain A, Human Aldose Reductase Mutant T113a Complexed With Idd388
pdb|3LQL|A Chain A, Human Aldose Reductase Mutant T113a Complexed With Idd 594
pdb|3MB9|A Chain A, Human Aldose Reductase Mutant T113a Complexed With
Zopolrestat
Length = 316
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|2PDM|A Chain A, Human Aldose Reductase Mutant S302r Complexed With
Zopolrestat.
pdb|2PDN|A Chain A, Human Aldose Reductase Mutant S302r Complexed With Uracil-
Type Inhibitor.
pdb|2PDP|A Chain A, Human Aldose Reductase Mutant S302r Complexed With Idd 393
Length = 316
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|3LD5|A Chain A, Human Aldose Reductase Mutant T113s Complexed With Idd594
pdb|3LZ3|A Chain A, Human Aldose Reductase Mutant T113s Complexed With Idd388
pdb|3LEN|A Chain A, Human Aldose Reductase Mutant T113s Complexed With
Zopolrestat
Length = 316
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|1XGD|A Chain A, Apo R268a Human Aldose Reductase
Length = 315
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 115 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 173
>pdb|2PDF|A Chain A, Human Aldose Reductase Mutant L300p Complexed With
Zopolrestat.
pdb|2PDH|A Chain A, Human Aldose Reductase Mutant L300p Complexed With Uracil-
Type Inhibitor At 1.45 A
Length = 316
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|1EL3|A Chain A, Human Aldose Reductase Complexed With Idd384 Inhibitor
pdb|1IEI|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
The Inhibitor Zenarestat.
pdb|1T40|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Nadp And Idd552 At Ph 5
pdb|2F2K|A Chain A, Aldose Reductase Tertiary Complex With Nadph And Deg
Length = 316
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|3Q67|A Chain A, Human Aldose Reductase C298s Mutant In Complex With Nadp+
In Space Group P212121
pdb|3Q67|B Chain B, Human Aldose Reductase C298s Mutant In Complex With Nadp+
In Space Group P212121
Length = 316
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|1ABN|A Chain A, The Crystal Structure Of The Aldose Reductase Nadph Binary
Complex
Length = 315
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 115 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 173
>pdb|2R24|A Chain A, Human Aldose Reductase Structure
Length = 316
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 116 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 174
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P
Length = 388
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 83 MREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGAN 125
M+E D SD C Q + IE+ I+ V F+G N
Sbjct: 94 MKEADDSDDECKFLDQLAQTSKKPVDIEDTINYCDVNDFNGKN 136
>pdb|2IPW|A Chain A, Crystal Structure Of C298a W219y Aldose Reductase
Complexed With Dichlorophenylacetic Acid
pdb|2ISF|A Chain A, Crystal Structure Of C298a W219y Aldose Reductase
Complexed With Phenylacetic Acid
pdb|1AZ1|A Chain A, Alrestatin Bound To C298aW219Y MUTANT HUMAN ALDOSE
Reductase
pdb|1AZ2|A Chain A, Citrate Bound, C298aW219Y MUTANT HUMAN ALDOSE REDUCTASE
Length = 315
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 80 FVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLANRS 138
F +E P D + S + + A +EEL+D +V+ +NF+ L+ ++ N+
Sbjct: 115 FKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKP 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,861,892
Number of Sequences: 62578
Number of extensions: 131563
Number of successful extensions: 276
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 39
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)