Query psy11065
Match_columns 138
No_of_seqs 188 out of 1077
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:09:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4n_A FAR upstream element bi 99.8 5.9E-19 2E-23 118.1 9.4 81 40-121 10-90 (92)
2 1x4m_A FAR upstream element bi 99.8 1.3E-18 4.3E-23 116.9 7.5 79 41-119 11-90 (94)
3 2hh3_A KH-type splicing regula 99.8 2.2E-18 7.4E-23 118.4 7.6 79 44-123 10-88 (106)
4 1j5k_A Heterogeneous nuclear r 99.7 2.2E-18 7.5E-23 114.6 6.6 73 43-116 12-84 (89)
5 2axy_A Poly(RC)-binding protei 99.7 3E-18 1E-22 110.1 6.7 70 43-115 3-72 (73)
6 1zzk_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 108.6 10.0 73 44-117 6-78 (82)
7 1wvn_A Poly(RC)-binding protei 99.7 8.3E-18 2.8E-22 110.1 7.6 72 44-116 5-76 (82)
8 2dgr_A Ring finger and KH doma 99.7 2.9E-18 1E-22 113.0 5.3 74 39-116 4-77 (83)
9 1dtj_A RNA-binding neurooncolo 99.7 1.1E-17 3.9E-22 107.7 7.5 71 45-115 3-75 (76)
10 2p2r_A Poly(RC)-binding protei 99.7 7.7E-18 2.6E-22 108.7 6.7 73 43-116 3-75 (76)
11 1we8_A Tudor and KH domain con 99.7 4E-17 1.4E-21 111.4 9.8 81 37-117 7-88 (104)
12 2opv_A KHSRP protein; KH domai 99.7 5.3E-17 1.8E-21 107.0 10.1 72 44-115 13-85 (85)
13 1ec6_A RNA-binding protein NOV 99.7 2.1E-17 7.1E-22 109.3 6.7 75 45-119 3-79 (87)
14 3krm_A Insulin-like growth fac 99.7 3.1E-16 1.1E-20 113.8 11.8 103 4-120 58-161 (163)
15 2hh2_A KH-type splicing regula 99.7 5.7E-17 2E-21 111.2 6.6 73 46-118 8-82 (107)
16 2jvz_A KH type-splicing, FAR u 99.7 2.2E-16 7.6E-21 114.3 10.0 104 4-118 58-163 (164)
17 2cte_A Vigilin; K homology typ 99.7 1E-16 3.6E-21 107.5 7.4 77 43-122 15-91 (94)
18 2ctl_A Vigilin; K homology typ 99.7 1.9E-16 6.4E-21 107.0 8.6 76 44-119 16-91 (97)
19 2ctm_A Vigilin; K homology typ 99.7 4.6E-16 1.6E-20 104.7 9.5 76 42-119 14-89 (95)
20 1j4w_A FUSE binding protein; s 99.7 3.4E-16 1.2E-20 114.9 9.1 110 4-113 57-174 (174)
21 2anr_A Neuro-oncological ventr 99.7 4.1E-16 1.4E-20 114.7 9.2 113 4-116 63-176 (178)
22 1vig_A Vigilin; RNA-binding pr 99.7 1.5E-16 5.1E-21 101.7 5.9 67 44-113 4-70 (71)
23 2jzx_A Poly(RC)-binding protei 99.6 4E-16 1.4E-20 112.9 8.4 103 4-115 57-159 (160)
24 2ctk_A Vigilin; K homology typ 99.6 6.6E-16 2.3E-20 105.5 7.8 74 42-118 14-87 (104)
25 3krm_A Insulin-like growth fac 99.6 7.7E-15 2.6E-19 106.4 8.2 73 44-116 2-74 (163)
26 1j4w_A FUSE binding protein; s 99.5 1.4E-14 4.8E-19 106.2 7.2 74 45-119 3-76 (174)
27 2ctj_A Vigilin; K homology typ 99.5 1.7E-14 5.7E-19 97.1 6.9 76 43-121 15-91 (95)
28 2jvz_A KH type-splicing, FAR u 99.5 4.3E-14 1.5E-18 102.2 8.3 75 45-119 2-77 (164)
29 1k1g_A SF1-BO isoform; splicin 99.5 5.9E-14 2E-18 99.5 8.7 95 43-137 5-123 (131)
30 2anr_A Neuro-oncological ventr 99.5 2.7E-14 9.1E-19 105.0 6.6 75 43-117 4-80 (178)
31 2jzx_A Poly(RC)-binding protei 99.5 2.7E-14 9.2E-19 103.2 6.4 73 43-118 3-75 (160)
32 2yqr_A KIAA0907 protein; struc 99.4 1.4E-12 4.6E-17 91.1 9.4 74 44-118 11-102 (119)
33 2ctf_A Vigilin; K homology typ 99.4 1.7E-12 5.8E-17 88.3 8.3 72 45-122 27-99 (102)
34 2qnd_A FMR1 protein; KH domain 99.3 2.2E-12 7.5E-17 92.5 6.4 70 47-116 69-143 (144)
35 2cpq_A FragIle X mental retard 99.3 4.9E-13 1.7E-17 89.2 1.9 72 42-119 12-85 (91)
36 2bl5_A MGC83862 protein, quaki 99.2 3.1E-11 1E-15 86.3 5.2 90 45-137 2-122 (140)
37 3n89_A Defective in GERM LINE 99.1 6.2E-11 2.1E-15 96.7 5.3 71 42-112 27-103 (376)
38 2e3u_A PH-DIM2P, hypothetical 99.1 6.1E-10 2.1E-14 85.0 9.4 93 4-115 88-191 (219)
39 3u1k_A Polyribonucleotide nucl 99.1 1.1E-10 3.8E-15 100.7 5.2 94 6-113 536-629 (630)
40 2e3u_A PH-DIM2P, hypothetical 99.0 2E-10 7E-15 87.6 5.7 69 40-114 29-102 (219)
41 3n89_A Defective in GERM LINE 98.9 4E-09 1.4E-13 86.0 8.5 69 45-113 186-259 (376)
42 4aid_A Polyribonucleotide nucl 98.8 1E-09 3.5E-14 95.9 3.1 104 6-124 539-643 (726)
43 1tua_A Hypothetical protein AP 98.8 1.9E-08 6.5E-13 75.2 7.4 92 4-114 58-159 (191)
44 1tua_A Hypothetical protein AP 98.7 1.6E-08 5.4E-13 75.7 6.4 64 47-116 6-74 (191)
45 2qnd_A FMR1 protein; KH domain 98.6 8E-08 2.7E-12 68.6 5.3 61 45-109 4-64 (144)
46 3v69_A Protein filia; RNA-bind 98.4 7.3E-07 2.5E-11 63.1 7.8 73 44-118 55-127 (140)
47 3cdi_A Polynucleotide phosphor 98.1 2.7E-07 9.3E-12 80.8 -0.2 78 41-124 556-633 (723)
48 1e3p_A Guanosine pentaphosphat 97.9 3.3E-07 1.1E-11 80.6 -4.7 93 5-113 567-660 (757)
49 2cxc_A NUSA; transcription ter 94.7 0.036 1.2E-06 39.3 4.2 40 45-84 36-75 (144)
50 2ba0_A Archeal exosome RNA bin 93.1 0.24 8.3E-06 37.3 6.5 59 47-112 138-196 (229)
51 2cxc_A NUSA; transcription ter 92.2 0.033 1.1E-06 39.5 0.5 38 45-82 103-140 (144)
52 2asb_A Transcription elongatio 90.9 0.2 6.9E-06 38.5 3.8 41 45-85 184-224 (251)
53 2z0s_A Probable exosome comple 90.6 1.3 4.5E-05 33.3 8.0 59 47-112 150-209 (235)
54 1k0r_A NUSA; two component arr 89.1 0.33 1.1E-05 39.3 3.8 41 45-85 307-347 (366)
55 1hh2_P NUSA, N utilization sub 89.0 0.43 1.5E-05 38.3 4.3 39 45-83 303-341 (344)
56 2pt7_G HP1451, hypothetical pr 87.3 0.3 1E-05 34.8 2.2 31 45-75 33-63 (152)
57 1wh9_A 40S ribosomal protein S 87.3 0.23 7.9E-06 32.4 1.5 30 43-72 33-62 (92)
58 2ja9_A Exosome complex exonucl 81.0 1.7 5.8E-05 31.4 4.0 58 47-111 93-152 (175)
59 2hh2_A KH-type splicing regula 76.7 1.1 3.8E-05 29.5 1.7 23 4-26 64-87 (107)
60 1go3_E DNA-directed RNA polyme 76.2 1.7 5.8E-05 31.2 2.7 36 44-82 6-53 (187)
61 3j20_C 30S ribosomal protein S 69.5 1.6 5.3E-05 32.7 1.2 40 44-83 39-85 (210)
62 2asb_A Transcription elongatio 68.7 1.9 6.6E-05 33.1 1.6 30 54-83 126-156 (251)
63 3gku_A Probable RNA-binding pr 67.8 1.9 6.6E-05 32.5 1.4 64 6-79 63-126 (225)
64 2xzm_C KH domain containing pr 67.7 2.3 7.7E-05 32.5 1.7 31 43-73 45-75 (243)
65 3u5c_D RP13, YS3, 40S ribosoma 66.3 1.8 6.2E-05 33.0 1.0 29 44-72 43-71 (240)
66 1k0r_A NUSA; two component arr 66.2 2.6 8.7E-05 34.1 1.9 30 54-83 249-279 (366)
67 3iz6_B 40S ribosomal protein S 65.8 1.7 6E-05 32.8 0.8 31 42-72 41-71 (227)
68 2nn6_G Exosome complex exonucl 65.1 1.7 5.8E-05 33.9 0.6 58 47-111 212-270 (289)
69 2je6_I RRP4, exosome complex R 64.7 0.56 1.9E-05 35.8 -2.2 44 47-97 157-200 (251)
70 2zkq_c 40S ribosomal protein S 62.6 2.1 7.1E-05 32.7 0.7 31 43-73 42-72 (243)
71 3iev_A GTP-binding protein ERA 62.2 4.8 0.00017 30.8 2.7 36 45-80 240-284 (308)
72 3r8n_C 30S ribosomal protein S 61.1 1.6 5.6E-05 32.4 -0.1 37 44-80 60-100 (206)
73 2hh3_A KH-type splicing regula 60.7 3.3 0.00011 27.3 1.3 18 4-21 65-82 (106)
74 3i1m_C 30S ribosomal protein S 59.4 2 6.8E-05 32.6 0.1 34 44-77 61-98 (233)
75 2vqe_C 30S ribosomal protein S 56.0 3.2 0.00011 31.5 0.7 30 44-73 61-90 (239)
76 3bbn_C Ribosomal protein S3; s 51.9 2.6 9E-05 31.5 -0.3 31 43-73 68-98 (218)
77 1wf3_A GTP-binding protein; GT 46.1 6 0.00021 30.3 0.9 27 54-80 240-274 (301)
78 3dhx_A Methionine import ATP-b 43.0 41 0.0014 21.6 4.6 62 45-112 22-88 (106)
79 1hh2_P NUSA, N utilization sub 38.3 12 0.00041 29.8 1.5 29 54-82 245-274 (344)
80 1ega_A Protein (GTP-binding pr 27.1 19 0.00064 27.3 0.9 27 47-73 233-260 (301)
81 1j2j_B ADP-ribosylation factor 25.6 80 0.0027 17.6 3.1 25 95-119 18-42 (45)
82 3af5_A Putative uncharacterize 25.0 1.4E+02 0.0047 25.3 6.0 64 5-82 81-144 (651)
83 2y3m_A Emhofq, protein transpo 23.5 1.3E+02 0.0046 20.5 4.8 31 76-112 136-166 (175)
84 1qd1_A Formiminotransferase-cy 23.3 2.7E+02 0.0094 21.9 7.3 53 61-115 13-71 (325)
85 2qsw_A Methionine import ATP-b 21.4 1.1E+02 0.0037 19.1 3.7 61 45-111 24-89 (100)
86 2qrr_A Methionine import ATP-b 20.9 1.1E+02 0.0037 19.1 3.6 60 46-111 25-89 (101)
87 1qey_A MNT-C, protein (regulat 20.2 47 0.0016 17.0 1.3 18 1-18 7-24 (31)
88 3big_A Fructose-1,6-bisphospha 20.1 2.4E+02 0.0081 22.3 5.9 44 64-108 170-223 (338)
No 1
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.79 E-value=5.9e-19 Score=118.11 Aligned_cols=81 Identities=27% Similarity=0.545 Sum_probs=71.1
Q ss_pred CCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 40 WEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 40 ~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
.+....+.+|.||.+++|.|||++|++|++|+++|||+|+|+++.+. ..++.|+|.|+++++++|+.+|++++.+.+..
T Consensus 10 ~~~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g-~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~~ 88 (92)
T 1x4n_A 10 QQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGG-LPERSCMLTGTPESVQSAKRLLDQIVEKGRSG 88 (92)
T ss_dssp CCCCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTT-CSEEEEEEEECHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCC-CCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 34566899999999999999999999999999999999999886432 23799999999999999999999999987764
Q ss_pred cC
Q psy11065 120 QF 121 (138)
Q Consensus 120 ~~ 121 (138)
..
T Consensus 89 p~ 90 (92)
T 1x4n_A 89 PS 90 (92)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 2
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.76 E-value=1.3e-18 Score=116.93 Aligned_cols=79 Identities=30% Similarity=0.498 Sum_probs=69.3
Q ss_pred CccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCC-CCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 41 EVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRED-DPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 41 ~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~-~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
.+...+.+|.||.+++|.||||+|++||+|+++|||+|+|+++..+ ...++.|+|.|++++++.|+.+|++++.+.+..
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 90 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGSG 90 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCSSC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccCCC
Confidence 3556899999999999999999999999999999999999886542 123899999999999999999999999876543
No 3
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=118.36 Aligned_cols=79 Identities=38% Similarity=0.603 Sum_probs=65.4
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhccCCC
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSG 123 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~~g~ 123 (138)
+.+.+|.||.++++.||||+|++||+|+++|+|+|+|+++....+ +|.|+|.|+++++++|+.+|++++.+.+....++
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~-er~V~I~G~~e~v~~A~~~I~~ii~~~~~g~~g~ 88 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP-EKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGP 88 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSS-EEEEEEESSHHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCc-eeEEEEEeCHHHHHHHHHHHHHHHhccccCCCCC
Confidence 357899999999999999999999999999999999987543323 7999999999999999999999999988765444
No 4
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.74 E-value=2.2e-18 Score=114.63 Aligned_cols=73 Identities=32% Similarity=0.536 Sum_probs=65.8
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
...+.+|.||.+++|.||||+|++|++|+++|||+|+|++... ...++.|+|.|+++++++|+.+|++++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLE-GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCC-CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4588999999999999999999999999999999999987432 233899999999999999999999999875
No 5
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.74 E-value=3e-18 Score=110.07 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=64.6
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHh
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDS 115 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~ 115 (138)
.+...+|+||.+++|.|||++|++|++|+++|||+|+|+++..+ +|.++|.|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~---er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCS---EEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCC---cEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999986332 89999999999999999999999876
No 6
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.74 E-value=1.8e-17 Score=108.55 Aligned_cols=73 Identities=32% Similarity=0.530 Sum_probs=65.4
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhh
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVM 117 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~ 117 (138)
..+.+|.||.+++|.||||+|++|++|+++|||+|+|++... .+.++.|+|.|+++++++|+.+|++++.+..
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLE-GSEDRIITITGTQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTS-CSSEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCC-CCCceEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999987532 2337999999999999999999999998753
No 7
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.73 E-value=8.3e-18 Score=110.11 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=64.0
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|++... ...++.|+|.|+++++++|+.+|.+++.+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE-GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCT-TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCC-CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999987532 233899999999999999999999999876
No 8
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=112.96 Aligned_cols=74 Identities=30% Similarity=0.358 Sum_probs=65.7
Q ss_pred CCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 39 MWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 39 ~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
++.+...+.+|.||.+++|+||||+|++||+|+++|||+|+|++..+ +++++|+|+++++++|+.+|.+++...
T Consensus 4 ~~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~----~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 4 GSSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK----EPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp CCSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS----CCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CCCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCC----CCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 34566789999999999999999999999999999999999986432 689999999999999999999976643
No 9
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.72 E-value=1.1e-17 Score=107.72 Aligned_cols=71 Identities=34% Similarity=0.580 Sum_probs=62.9
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCC--CCCCcEEEEecCHHHHHHHHHHHHHHHHh
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRED--DPSDRRCMLSGSPDQVQEARARIEELIDS 115 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~--~~~~r~i~i~G~~e~i~~A~~~I~~ii~~ 115 (138)
.+.+|.||.+++|.|||++|++|++|+++|||+|+|+++.++ ...++.|+|.|+++++..|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999986432 22379999999999999999999998764
No 10
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=108.71 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=65.3
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. +.+.++.|+|.|+++++..|+.+|.+++.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-EGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCC-TTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCC-CCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 347899999999999999999999999999999999998743 3334899999999999999999999998753
No 11
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.72 E-value=4e-17 Score=111.43 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=70.2
Q ss_pred CCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCC-CCCcEEEEecCHHHHHHHHHHHHHHHHh
Q psy11065 37 GGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDD-PSDRRCMLSGSPDQVQEARARIEELIDS 115 (138)
Q Consensus 37 ~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~-~~~r~i~i~G~~e~i~~A~~~I~~ii~~ 115 (138)
.......|.+.+|.||.+++|.|||++|++|++|+++|||+|+|++..... +.++.|+|.|+++++++|+.+|.+++.+
T Consensus 7 ~~~s~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 7 GILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CCCSSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 345567889999999999999999999999999999999999998754321 1279999999999999999999999976
Q ss_pred hh
Q psy11065 116 VM 117 (138)
Q Consensus 116 ~~ 117 (138)
..
T Consensus 87 ~~ 88 (104)
T 1we8_A 87 DE 88 (104)
T ss_dssp HH
T ss_pred Ch
Confidence 43
No 12
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=106.95 Aligned_cols=72 Identities=29% Similarity=0.541 Sum_probs=64.2
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC-CCCCCcEEEEecCHHHHHHHHHHHHHHHHh
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE-DDPSDRRCMLSGSPDQVQEARARIEELIDS 115 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~-~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~ 115 (138)
....+|.||.+++|.||||+|++||+|+++|||+|+|+++.. +...++.|+|.|++++++.|+++|++++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 378899999999999999999999999999999999988643 223388999999999999999999999864
No 13
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.70 E-value=2.1e-17 Score=109.31 Aligned_cols=75 Identities=32% Similarity=0.537 Sum_probs=66.3
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC--CCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE--DDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~--~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
.+.+|.||.+++|.|||++|++|++|+++|||+|+|+++.+ +...++.|+|.|+++++..|+.+|.+++.+....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 57899999999999999999999999999999999998543 2223799999999999999999999999886554
No 14
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=113.79 Aligned_cols=103 Identities=26% Similarity=0.297 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecC
Q psy11065 4 IEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQM 83 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~ 83 (138)
..+..|+.++.+++.....+.+ ......+.+|.||.+++|.|||++|++|++|+++|||+|.|+++
T Consensus 58 e~v~~A~~~I~~~~~e~~~~~~--------------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~ 123 (163)
T 3krm_A 58 EAQFKAQGRIYGKLKEENFFGP--------------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD 123 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCS--------------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHHHHHhccccccc--------------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC
Confidence 4678899999998876533211 11224677999999999999999999999999999999999876
Q ss_pred CCCCCCC-cEEEEecCHHHHHHHHHHHHHHHHhhhhcc
Q psy11065 84 REDDPSD-RRCMLSGSPDQVQEARARIEELIDSVMVEQ 120 (138)
Q Consensus 84 ~~~~~~~-r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~ 120 (138)
..+..++ +.++|.|+++++..|+.+|.+++.+.++.+
T Consensus 124 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 124 QTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp CCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHHHhh
Confidence 5443333 489999999999999999999999987765
No 15
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.7e-17 Score=111.25 Aligned_cols=73 Identities=30% Similarity=0.580 Sum_probs=65.7
Q ss_pred EEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCC--CCCcEEEEecCHHHHHHHHHHHHHHHHhhhh
Q psy11065 46 VIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDD--PSDRRCMLSGSPDQVQEARARIEELIDSVMV 118 (138)
Q Consensus 46 ~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~--~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~ 118 (138)
+.+|.||.+++|.||||+|++||+|+++|||+|+|.++.++. ..++.|+|.|+++++++|+.+|++++.+...
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLC 82 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcccc
Confidence 689999999999999999999999999999999999865322 2379999999999999999999999998764
No 16
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=114.33 Aligned_cols=104 Identities=36% Similarity=0.557 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHhhcCC--CCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEe
Q psy11065 4 IEFQQSRRWQQGIGRNND--NFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFV 81 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~ 81 (138)
.+|++|++++.+++.... +|.+...++. ....+.+|.||.+++|.|||++|++|++|+++|||+|.|+
T Consensus 58 ~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~----------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~ 127 (164)
T 2jvz_A 58 YKVQQACEMVMDILRERDQGGFGDRNEYGS----------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFK 127 (164)
T ss_dssp HHHHHHHHHHHHHTTCSSSCCCSSCSSCTT----------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccCC----------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEe
Confidence 468999999999988653 2222111111 0123578999999999999999999999999999999998
Q ss_pred cCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhh
Q psy11065 82 QMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMV 118 (138)
Q Consensus 82 ~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~ 118 (138)
+.... +.++.++|.|+++++..|+.+|.+++.+.+.
T Consensus 128 ~~~~~-~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 163 (164)
T 2jvz_A 128 QDDGT-GPEKIAHIMGPPDRCEHAARIINDLLQSLRS 163 (164)
T ss_dssp CCCTT-SSEEEEEEESCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCC-CCcEEEEEEcCHHHHHHHHHHHHHHHhhhhC
Confidence 75432 3379999999999999999999999988653
No 17
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.67 E-value=1e-16 Score=107.54 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=68.2
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhccCC
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFS 122 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~~g 122 (138)
...+.+|.||.+++|.|||++|++||+|+++|||+|+|++..++ ++.|+|.|+++++.+|+.+|.+++.+.....+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~---~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~~~~ 91 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDP---SNQIKITGTKEGIEKARHEVLLISAEQDKRSGP 91 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSS---CCEEEEEECHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCC---CCeEEEEECHHHHHHHHHHHHHHhhcccccccc
Confidence 34789999999999999999999999999999999999875432 578999999999999999999999988766543
No 18
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.67 E-value=1.9e-16 Score=107.00 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=67.5
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
..+.+|.||+++++.|||++|++|++|+++|||+|+|+++..+...++.|+|.|+++++..|+.+|..++.+.+..
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~~ 91 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQM 91 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999999886543323789999999999999999999999886653
No 19
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.66 E-value=4.6e-16 Score=104.72 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=67.6
Q ss_pred ccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 42 VTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 42 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
..+.+.+|.||+++++.|||++|++|++|+++|||+|+|+++.. .+.+.|+|.|+++++++|+++|..++.+.++.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~--~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~~ 89 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA--PDPNCVTVTGLPENVEEAIDHILNLEEEYLAD 89 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC--SCTTEEEEESCHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC--CCCcEEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999987543 22679999999999999999999999887763
No 20
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.66 E-value=3.4e-16 Score=114.88 Aligned_cols=110 Identities=26% Similarity=0.420 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHhhcCC--CCCCCcCCCCCCCCCCCCCC----ccceEEEEEecCCccceeeccCcHHHHHHHHHhCCe
Q psy11065 4 IEFQQSRRWQQGIGRNND--NFGNMREFNENGDGRGGMWE----VTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGAR 77 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~--~~~~~~~~~~~~~g~~~~~~----~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~ 77 (138)
..|++|+++|.+++.... .|+....++.+.+...+.|. ....+.+|.||.+++|.||||+|++|++|+++|||+
T Consensus 57 ~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~ 136 (174)
T 1j4w_A 57 DRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGAR 136 (174)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCE
Confidence 478999999999987542 12111000000000001111 123688999999999999999999999999999999
Q ss_pred EEEecCCCCC--CCCcEEEEecCHHHHHHHHHHHHHHH
Q psy11065 78 VQFVQMREDD--PSDRRCMLSGSPDQVQEARARIEELI 113 (138)
Q Consensus 78 I~I~~~~~~~--~~~r~i~i~G~~e~i~~A~~~I~~ii 113 (138)
|+|++...+. +.++.|+|.|+++++..|+.+|+++|
T Consensus 137 I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 137 IELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 9998864322 33799999999999999999999874
No 21
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.65 E-value=4.1e-16 Score=114.74 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecC
Q psy11065 4 IEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQM 83 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~ 83 (138)
..|.+|++++.+++......................+.....+.+|.||.+++|.|||++|++||+|+++|||+|.|.+.
T Consensus 63 ~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 63 EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 46899999999998765332110000000000001112334789999999999999999999999999999999999875
Q ss_pred CC-CCCCCcEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 84 RE-DDPSDRRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 84 ~~-~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
.. +.+.++.|+|.|+++++.+|+.+|.+++.+.
T Consensus 143 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 143 PDGINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp C----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 42 2233799999999999999999999998864
No 22
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.65 E-value=1.5e-16 Score=101.66 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=61.2
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHH
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELI 113 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii 113 (138)
..+.+|.||+++++.|||++|++|++|+++|||+|+|+++... ++.|+|.|+++++++|+++|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~---~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEK---SNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSS---SEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCc---ccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999886542 689999999999999999998864
No 23
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=112.88 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecC
Q psy11065 4 IEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQM 83 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~ 83 (138)
.+|+.|+.++.+++...... ... ........+.+.++.||.+++|.|||++|++|++|+++|||+|.|+++
T Consensus 57 ~~v~~A~~~I~~~i~e~~~~--~~~-------~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~ 127 (160)
T 2jzx_A 57 NAIFKAFAMIIDKLEEDISS--SMT-------NSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 127 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--CCC-------SSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC
T ss_pred HHHHHHHHHHHHHHHhhccc--cCC-------CCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC
Confidence 46889999998877642110 000 000112235899999999999999999999999999999999999875
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHHHHHHHHh
Q psy11065 84 REDDPSDRRCMLSGSPDQVQEARARIEELIDS 115 (138)
Q Consensus 84 ~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~ 115 (138)
..+.+.++.|+|.|+++++..|+.+|.+++.+
T Consensus 128 ~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 128 MLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 54445589999999999999999999999876
No 24
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.63 E-value=6.6e-16 Score=105.53 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=66.6
Q ss_pred ccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhh
Q psy11065 42 VTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMV 118 (138)
Q Consensus 42 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~ 118 (138)
..|.+.+|.||.++++.|||++|++|++|+++|||+|+|+++... .+.|+|.|+++++..|+.+|..++.+.+.
T Consensus 14 ~ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~---~~~V~I~G~~e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 14 LVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ---SDIIAITGLAANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp SSCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT---CCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCC---cceEEEEcCHHHHHHHHHHHHHHHhhHHH
Confidence 356899999999999999999999999999999999999875432 56899999999999999999999988664
No 25
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=106.38 Aligned_cols=73 Identities=30% Similarity=0.485 Sum_probs=66.5
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
+.+++|+||.+++|.|||++|++|++|+++|||+|+|+++..+...+|+|+|.|+++++..|+.+|.+++.+.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999886544444899999999999999999999998876
No 26
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.53 E-value=1.4e-14 Score=106.22 Aligned_cols=74 Identities=41% Similarity=0.700 Sum_probs=65.0
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
.+.+|+||.+++|.||||+|++||+|+++|||+|+|.+.... ..+++|+|.|+++++.+|+.+|.+++.+....
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~-~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGT-TPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTS-CSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCC-CCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 678999999999999999999999999999999999864322 23799999999999999999999999987643
No 27
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.53 E-value=1.7e-14 Score=97.11 Aligned_cols=76 Identities=17% Similarity=0.363 Sum_probs=67.3
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHh-CCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhccC
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNET-GARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQF 121 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~T-ga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~~ 121 (138)
...+..|.||+++++.|||++|++|++|+++| ||+|+|+++... .+.|+|.|+.+++++|+++|+.++.+.+...+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~---~~~V~I~G~~~~v~~A~~~I~~iv~e~e~~~~ 91 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG---SDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSG 91 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT---CCEEEEESCHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC---cceEEEEcCHHHHHHHHHHHHHHHhhhhhccc
Confidence 34789999999999999999999999999999 999999875432 67899999999999999999999998775543
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.51 E-value=4.3e-14 Score=102.21 Aligned_cols=75 Identities=28% Similarity=0.505 Sum_probs=65.7
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC-CCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE-DDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~-~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
.+.+|.||.+++|.|||++|++||+|+++|||+|++.++.. +...++.++|.|+++++..|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~ 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC
Confidence 57899999999999999999999999999999999976532 2223789999999999999999999999876643
No 29
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=5.9e-14 Score=99.51 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=72.9
Q ss_pred cceEEEEEecCC------ccceeeccCcHHHHHHHHHhCCeEEEecCCC----------------CCCCCcEEEEecCHH
Q psy11065 43 TWEVIQVCVPKA------AVGVVIGKGGDMIKKLQNETGARVQFVQMRE----------------DDPSDRRCMLSGSPD 100 (138)
Q Consensus 43 ~~~~~~i~IP~~------~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~----------------~~~~~r~i~i~G~~e 100 (138)
...+.++.||.+ ++|.|||++|++||+|+++|||+|.|..... .+...++.+..-+.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 347889999998 8899999999999999999999999976210 001145555566899
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCC--cccchhhhhcccC
Q psy11065 101 QVQEARARIEELIDSVMVEQFSGA--NFDKLRSTVLANR 137 (138)
Q Consensus 101 ~i~~A~~~I~~ii~~~~~~~~g~~--~~~~l~~~~~~~~ 137 (138)
.+++|+++|+.++.+......+.- ...+||++++.|-
T Consensus 85 ~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nG 123 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNG 123 (131)
T ss_dssp HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999999999987443333333 4459999999883
No 30
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.50 E-value=2.7e-14 Score=104.97 Aligned_cols=75 Identities=29% Similarity=0.568 Sum_probs=66.0
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC--CCCCCcEEEEecCHHHHHHHHHHHHHHHHhhh
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE--DDPSDRRCMLSGSPDQVQEARARIEELIDSVM 117 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~--~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~ 117 (138)
...+++|.||.+++|.||||+|++|++|+++|||+|+|.+..+ +...+|+++|.|+++++.+|+.+|.+++.+..
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 4588999999999999999999999999999999999987542 22238999999999999999999999997754
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=103.19 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=66.3
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhh
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMV 118 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~ 118 (138)
.+.+.+|.||.+++|.|||++|++|++|+++|||+|+|++...+ ++.++|.|+++++.+|+.+|.+++.+...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~---~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP---ERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTT---EEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCC---ceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 56899999999999999999999999999999999999985332 89999999999999999999999887643
No 32
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=91.09 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=60.7
Q ss_pred ceEEEEEecCC-------ccceeeccCcHHHHHHHHHhCCeEEEecCCC-----------CCCCCcEEEEecCHHHHHHH
Q psy11065 44 WEVIQVCVPKA-------AVGVVIGKGGDMIKKLQNETGARVQFVQMRE-----------DDPSDRRCMLSGSPDQVQEA 105 (138)
Q Consensus 44 ~~~~~i~IP~~-------~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~-----------~~~~~r~i~i~G~~e~i~~A 105 (138)
....++.||.+ ++|.|||++|++||+|+++|||+|.|..... ..+ .++.+.+.+++++++|
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~-l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEP-MYIYISHPKPEGLAAA 89 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSB-CEEEEEESSHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCC-cEEEEEeCCHHHHHHH
Confidence 46778888765 7899999999999999999999999973311 111 5777778899999999
Q ss_pred HHHHHHHHHhhhh
Q psy11065 106 RARIEELIDSVMV 118 (138)
Q Consensus 106 ~~~I~~ii~~~~~ 118 (138)
+++|++++.+...
T Consensus 90 ~~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 90 KKLCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhchHH
Confidence 9999999987654
No 33
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=1.7e-12 Score=88.27 Aligned_cols=72 Identities=21% Similarity=0.408 Sum_probs=64.7
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHH-hCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhccCC
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNE-TGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFS 122 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~-Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~~g 122 (138)
.+.+|.||..+++.|||++|++|++|+++ ++++|++++ . ++.|+|.|+++.|.+|+..|+.++.+.......
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---~---~~~ItI~G~~~~V~~a~~~I~~~v~el~~~~~~ 99 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---G---EDKITLEGPTEDVSVAQEQIEGMVKDLINRSGP 99 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---S---SCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---C---CCEEEEECCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999997 589999987 2 578999999999999999999999987765443
No 34
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.32 E-value=2.2e-12 Score=92.50 Aligned_cols=70 Identities=26% Similarity=0.513 Sum_probs=60.1
Q ss_pred EEEEecCCccceeeccCcHHHHHHHHHhCC-eEEEecCCCCC-C-CC--cEEEEecCHHHHHHHHHHHHHHHHhh
Q psy11065 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGA-RVQFVQMREDD-P-SD--RRCMLSGSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga-~I~I~~~~~~~-~-~~--r~i~i~G~~e~i~~A~~~I~~ii~~~ 116 (138)
.++.||.+.+|++|||+|.||+.|++.||+ +|+|.++.+.. + .+ +.++|.|++++++.|+.+|+..|.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999997 99998754331 1 13 35899999999999999999998753
No 35
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=4.9e-13 Score=89.22 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=61.1
Q ss_pred ccceEEEEEecCCccceeeccCcHHHHHHHHHhCCe-EEEecCCCCCCCCcEEEEec-CHHHHHHHHHHHHHHHHhhhhc
Q psy11065 42 VTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGAR-VQFVQMREDDPSDRRCMLSG-SPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 42 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~-I~I~~~~~~~~~~r~i~i~G-~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
..+...+|.||+++++.|||++|++|++|+++||++ |.|.++ +..|.|.| +.+++++|+++|+.+......+
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed------dG~V~I~g~~~ea~~~A~~~I~~ie~~~~vp 85 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED------TGTFRIYGESADAVKKARGFLEFVEDFIQVP 85 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT------TTEEEEEESSHHHHHHHHHHHSCCCCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC------CCEEEEEECCHHHHHHHHHHHHhhheEEecC
Confidence 345889999999999999999999999999999998 999752 35688888 9999999999997765544433
No 36
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.16 E-value=3.1e-11 Score=86.33 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=63.7
Q ss_pred eEEEEEecCCc------cceeeccCcHHHHHHHHHhCCeEEEecCCCC----------------CCC-CcEEEEec-CHH
Q psy11065 45 EVIQVCVPKAA------VGVVIGKGGDMIKKLQNETGARVQFVQMRED----------------DPS-DRRCMLSG-SPD 100 (138)
Q Consensus 45 ~~~~i~IP~~~------vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~----------------~~~-~r~i~i~G-~~e 100 (138)
...++.||.+. +|.|||++|.++|+|+++|||+|.|...... ... .--|.|++ +++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 45778888665 9999999999999999999999999864310 000 11334444 443
Q ss_pred -----HHHHHHHHHHHHHHhhhhccCCCC--cccchhhhhcccC
Q psy11065 101 -----QVQEARARIEELIDSVMVEQFSGA--NFDKLRSTVLANR 137 (138)
Q Consensus 101 -----~i~~A~~~I~~ii~~~~~~~~g~~--~~~~l~~~~~~~~ 137 (138)
.+++|+++|+.++..... +.. ...+||++++.|-
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e---~~de~K~~QL~eLA~lNG 122 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAE---GEDSLKKMKLMELAILNG 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSS---SSSHHHHHHHTGGGSSST
T ss_pred hhHHHHHHHHHHHHHHHCCCCCc---chhHHHHHHHHHHHHhcC
Confidence 789999999999864321 222 3348999999883
No 37
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.10 E-value=6.2e-11 Score=96.72 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=62.0
Q ss_pred ccceEEEEEecCCccceeeccCc--HHHHHHHHHhCCeEEEecCC--C--CCCCCcEEEEecCHHHHHHHHHHHHHH
Q psy11065 42 VTWEVIQVCVPKAAVGVVIGKGG--DMIKKLQNETGARVQFVQMR--E--DDPSDRRCMLSGSPDQVQEARARIEEL 112 (138)
Q Consensus 42 ~~~~~~~i~IP~~~vg~IIGk~G--~~Ik~I~~~Tga~I~I~~~~--~--~~~~~r~i~i~G~~e~i~~A~~~I~~i 112 (138)
....+.++.||..+++.||||+| ++|++|+++|||+|++++.. . +......|+|+|.+++|++|+..|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 35689999999999999999999 99999999999999998765 1 112267899999999999999999885
No 38
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.07 E-value=6.1e-10 Score=84.97 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecC-----------CccceeeccCcHHHHHHHH
Q psy11065 4 IEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPK-----------AAVGVVIGKGGDMIKKLQN 72 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~-----------~~vg~IIGk~G~~Ik~I~~ 72 (138)
.++++|+++|.++....+. ..+..- ..+......+.|+. ..+|+||||+|+||+.|++
T Consensus 88 ~~i~kA~~~I~~i~rg~~~---e~g~~l--------l~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~ 156 (219)
T 2e3u_A 88 LAVWKARDIVLAIGRGFSP---ERAFRL--------LNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEE 156 (219)
T ss_dssp HHHHHHHHHHHHHHTTCCH---HHHGGG--------GSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCc---ccccee--------ccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHH
Confidence 6789999999999853210 000000 00111233455542 2689999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHh
Q psy11065 73 ETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDS 115 (138)
Q Consensus 73 ~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~ 115 (138)
.|||+|.|.+ +.+.|.|++++++.|+.+|.+++..
T Consensus 157 ~Tg~~I~v~~--------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 157 MSGASVSVYG--------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHCCEEEEET--------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HhCceEEECC--------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 9999999964 4699999999999999999999954
No 39
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=100.74 Aligned_cols=94 Identities=28% Similarity=0.281 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC
Q psy11065 6 FQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE 85 (138)
Q Consensus 6 ~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~ 85 (138)
+++|++-..+|++.+... -......+...+|....+.||+++++.|||++|++||.|+++|||+|.|.++
T Consensus 536 L~~A~~g~~~I~~~m~~a--------l~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~-- 605 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKT--------ISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE-- 605 (630)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC--
Confidence 567777777776633110 0000112344567899999999999999999999999999999999999862
Q ss_pred CCCCCcEEEEecCHHHHHHHHHHHHHHH
Q psy11065 86 DDPSDRRCMLSGSPDQVQEARARIEELI 113 (138)
Q Consensus 86 ~~~~~r~i~i~G~~e~i~~A~~~I~~ii 113 (138)
.++.+...+++++++|+++|++++
T Consensus 606 ----G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ----ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp ----SEEEEEESSHHHHHHHHHHTTC--
T ss_pred ----cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 344444556899999999998876
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.05 E-value=2e-10 Score=87.59 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=57.8
Q ss_pred CCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecC-----HHHHHHHHHHHHHHHH
Q psy11065 40 WEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGS-----PDQVQEARARIEELID 114 (138)
Q Consensus 40 ~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~-----~e~i~~A~~~I~~ii~ 114 (138)
+..+|...++.||+++++.|||++|++|+.|+++|||+|+|+.+ +..++|.++ ++++++|+++|.+++.
T Consensus 29 s~~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 29 EEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE------TGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp ----CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT------TCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC------CCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 34567889999999999999999999999999999999999842 345677664 7999999999999983
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.90 E-value=4e-09 Score=86.03 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=57.2
Q ss_pred eEEEEEecCCccceeeccCc--HHHHHHHHHhCCeEEEecCCCCC---CCCcEEEEecCHHHHHHHHHHHHHHH
Q psy11065 45 EVIQVCVPKAAVGVVIGKGG--DMIKKLQNETGARVQFVQMREDD---PSDRRCMLSGSPDQVQEARARIEELI 113 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G--~~Ik~I~~~Tga~I~I~~~~~~~---~~~r~i~i~G~~e~i~~A~~~I~~ii 113 (138)
.+.++.|+...+..|||++| ..|++|+++|||+|.+++..+.. .....|+|.|+.++|..|++.|.++|
T Consensus 186 ~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 186 FTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred eEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 68899999999999999998 67799999999999998754321 12468999999999999999999885
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.84 E-value=1e-09 Score=95.93 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCC-CCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCC
Q psy11065 6 FQQSRRWQQGIGRNNDN-FGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMR 84 (138)
Q Consensus 6 ~~~ak~~v~~i~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~ 84 (138)
+++|++-..+|++.... ... .-..+...+|....+.||+++++.|||++|++||.|+++||++|.|.++
T Consensus 539 L~~A~~g~~~I~~~m~~al~~---------~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd- 608 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDA---------PRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD- 608 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS---------CCSSCCSSCCC---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------hhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC-
Confidence 67777777777764321 100 0112344567899999999999999999999999999999999999862
Q ss_pred CCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy11065 85 EDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGA 124 (138)
Q Consensus 85 ~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~~g~~ 124 (138)
..+.+...+.+++++|+++|+.++.+.+..+.--|
T Consensus 609 -----G~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G 643 (726)
T 4aid_A 609 -----GVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDG 643 (726)
T ss_dssp ----------CCSCHHHHHHHHHC----------------
T ss_pred -----ceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEE
Confidence 45556667899999999999999988776654443
No 43
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.76 E-value=1.9e-08 Score=75.21 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecC----------CccceeeccCcHHHHHHHHH
Q psy11065 4 IEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPK----------AAVGVVIGKGGDMIKKLQNE 73 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~----------~~vg~IIGk~G~~Ik~I~~~ 73 (138)
..+.+|+++|.++...-+ ...+..- ..+......|.|+. ..+|+|||++|.||+.|+..
T Consensus 58 ~~i~KA~dlI~ai~rgf~---~e~A~~L--------l~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~ 126 (191)
T 1tua_A 58 VNLMKAAEVVKAISLGFP---PEKAFRL--------LEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEM 126 (191)
T ss_dssp HHHHHHHHHHHHHHHTCC---HHHHGGG--------GSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---HHHhhhc--------ccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHH
Confidence 467899999999887532 1111100 00112345566653 35899999999999999999
Q ss_pred hCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHH
Q psy11065 74 TGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELID 114 (138)
Q Consensus 74 Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~ 114 (138)
|||+|.|.+ +.+.+.|+++.++.|+..|.+++.
T Consensus 127 Tg~~I~v~~--------~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 127 TDTYINVGE--------YEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp HTCEEEECS--------SEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred HCceEEEcC--------CEEEEEeChHHHHHHHHHHHHHHc
Confidence 999999965 368999999999999999999995
No 44
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.74 E-value=1.6e-08 Score=75.65 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEe-----cCHHHHHHHHHHHHHHHHhh
Q psy11065 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLS-----GSPDQVQEARARIEELIDSV 116 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~-----G~~e~i~~A~~~I~~ii~~~ 116 (138)
.++.||.+.+|.|||++|++++.|++.++++|+++.. ++.+++. |++.++.+|.++|.++....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999753 5667777 99999999999999988743
No 45
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.56 E-value=8e-08 Score=68.57 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=48.4
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHH
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARI 109 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I 109 (138)
.+.+|.||.+.+|.+||++|++|+.|++++| |++.... +++ +.++...++|+.+..|+.++
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~-~~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDT-CTFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTT-TEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCc-hheeeccCCHHHHHHHHHhh
Confidence 5789999999999999999999999999999 4443322 122 56777778899999987643
No 46
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.45 E-value=7.3e-07 Score=63.09 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=64.2
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhh
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMV 118 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~ 118 (138)
.....|.|....++.|||++|+.|+.|+..|++.|+|..-.. ++...|+|.|++..-..|+.+|..+..--++
T Consensus 55 ~dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s--~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 55 EDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP--ERRAEIWIFGPPPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp SSCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT--TSCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC--CCcEEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999987633 3589999999999999999999998775443
No 47
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.14 E-value=2.7e-07 Score=80.79 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=0.0
Q ss_pred CccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHhhhhcc
Q psy11065 41 EVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQ 120 (138)
Q Consensus 41 ~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii~~~~~~~ 120 (138)
..+|....+.||+++++.+||++|++|+.|.++||+.|+|.++ ..+.+...+.+.+.+|.++|+.++.+.+..+
T Consensus 556 ~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d------g~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~ 629 (723)
T 3cdi_A 556 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD------GTVKIAATDGEKAKHAIRRIEEITAEIEVGR 629 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCC------ccEEEecCCHHHHHHHHHHHHHHhhhhhcCc
Confidence 4467899999999999999999999999999999999999862 3455556677888999999999887666554
Q ss_pred CCCC
Q psy11065 121 FSGA 124 (138)
Q Consensus 121 ~g~~ 124 (138)
.--|
T Consensus 630 i~~G 633 (723)
T 3cdi_A 630 VYTG 633 (723)
T ss_dssp ----
T ss_pred EEEE
Confidence 4333
No 48
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.87 E-value=3.3e-07 Score=80.60 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhcCCC-CCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecC
Q psy11065 5 EFQQSRRWQQGIGRNNDN-FGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQM 83 (138)
Q Consensus 5 ~~~~ak~~v~~i~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~ 83 (138)
.+++|++...+|++.... .... ..+....|....+.||+++++.+||++|++||.|+++||+.|.|.++
T Consensus 567 aL~~A~~~~~~I~~~m~~al~~~----------~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d 636 (757)
T 1e3p_A 567 ALKQARDARLHILDVMMEAIDTP----------DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDD 636 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC----------CCCCTTSCBCCCC------------------CTTCCCCCSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhccc----------ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecCC
Confidence 356777777776663311 1000 12233456778899999999999999999999999999999999851
Q ss_pred CCCCCCCcEEEEecCHHHHHHHHHHHHHHH
Q psy11065 84 REDDPSDRRCMLSGSPDQVQEARARIEELI 113 (138)
Q Consensus 84 ~~~~~~~r~i~i~G~~e~i~~A~~~I~~ii 113 (138)
..+.+...+.+...+|.++|+.+.
T Consensus 637 ------G~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 637 ------GTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ---------CCCBSSHHHHCC---------
T ss_pred ------ceEEEecCCHHHHHHHHHHHHHhc
Confidence 344444567788888988888877
No 49
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=94.66 E-value=0.036 Score=39.29 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=36.2
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCC
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMR 84 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~ 84 (138)
....+.|+...+|..||++|++|+.|+++.|-+|.|-.-.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s 75 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS 75 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC
Confidence 5678999999999999999999999999999999887643
No 50
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=93.10 E-value=0.24 Score=37.32 Aligned_cols=59 Identities=31% Similarity=0.331 Sum_probs=47.6
Q ss_pred EEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHH
Q psy11065 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEEL 112 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~i 112 (138)
.-+.++...+.+++|+++..++.|.+.+++.|.+-. +-.|+|.++......+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-------CcEEEEeCCchhHHHHHHHHHHH
Confidence 567899999999999999999999999999999976 45789998877555555445433
No 51
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=92.18 E-value=0.033 Score=39.47 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=34.4
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEec
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQ 82 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~ 82 (138)
....+.||.+..+..|||+|.+++-..+-||.+|.|..
T Consensus 103 ~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 103 KQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred EEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 56778999999999999999999999999999888754
No 52
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=90.89 E-value=0.2 Score=38.53 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=37.0
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE 85 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~ 85 (138)
....+.||.+..+.-|||+|.|++--.+-||.+|.|.....
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 46788999999999999999999999999999999977543
No 53
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=90.56 E-value=1.3 Score=33.27 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=47.1
Q ss_pred EEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEec-CHHHHHHHHHHHHHH
Q psy11065 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSG-SPDQVQEARARIEEL 112 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G-~~e~i~~A~~~I~~i 112 (138)
.-+.++...+..++|+++..++.|.+.++++|.+-. +..|+|.+ +++.+..+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999989999999977 44677775 665666555555544
No 54
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=89.12 E-value=0.33 Score=39.29 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=37.2
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCC
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMRE 85 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~ 85 (138)
....+.||.+..+..|||+|.|++-..+-||.+|.|.....
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 56888999999999999999999999999999999977543
No 55
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=88.97 E-value=0.43 Score=38.30 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=35.9
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecC
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQM 83 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~ 83 (138)
....+.||.+..+.-|||+|.|++--.+-||.+|.|...
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 467889999999999999999999999999999999763
No 56
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=87.33 E-value=0.3 Score=34.80 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=26.6
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhC
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETG 75 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tg 75 (138)
.++.+.|..+..|.+|||.|.|++.||--+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3577888899999999999999999987663
No 57
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=87.30 E-value=0.23 Score=32.38 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=24.3
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHH
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQN 72 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~ 72 (138)
++...++.|....-|.|||++|..|++|++
T Consensus 33 ~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 33 TPTRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CSSCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred CCCeEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 345678888889999999999998877544
No 58
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=80.98 E-value=1.7 Score=31.42 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=44.6
Q ss_pred EEEEecCCccceeeccCcH-HHHHHHHHhCCeEEEecCCCCCCCCcEEEEec-CHHHHHHHHHHHHH
Q psy11065 47 IQVCVPKAAVGVVIGKGGD-MIKKLQNETGARVQFVQMREDDPSDRRCMLSG-SPDQVQEARARIEE 111 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~-~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G-~~e~i~~A~~~I~~ 111 (138)
.-+.||..++.+++++.+. .++.|.+.+++.|.+-. +-.|+|.+ ++.....+...|..
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~-------NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL-------NGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET-------TTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC-------CcEEEEecCCHHHHHHHHHHHHH
Confidence 6789999999999998888 99999989999999987 34677775 55444444455554
No 59
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=76.72 E-value=1.1 Score=29.55 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHhhcCC-CCCCC
Q psy11065 4 IEFQQSRRWQQGIGRNND-NFGNM 26 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~-~~~~~ 26 (138)
.+|+.|+++|.+++.... .|++.
T Consensus 64 e~v~~A~~~I~~~i~e~~~~~~p~ 87 (107)
T 2hh2_A 64 QQIDHAKQLIEEKIEGPLCPVGPG 87 (107)
T ss_dssp HHHHHHHHHHHHHSCSCCCEEC--
T ss_pred HHHHHHHHHHHHHHhcccccCCCC
Confidence 578999999999998764 45543
No 60
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=76.22 E-value=1.7 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=30.2
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHH-HHHh--------CC---eEEEec
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKL-QNET--------GA---RVQFVQ 82 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I-~~~T--------ga---~I~I~~ 82 (138)
.....+.||+++.+.+|| .+|++| .+++ |+ .+.|.+
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 456789999999999999 799995 9999 87 566765
No 61
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.51 E-value=1.6 Score=32.68 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=29.5
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHH----HHHhC---CeEEEecC
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKL----QNETG---ARVQFVQM 83 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I----~~~Tg---a~I~I~~~ 83 (138)
+...++.|....-|.|||++|..|++| ++.++ ..|.|.+-
T Consensus 39 ~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~eV 85 (210)
T 3j20_C 39 PLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVEEI 85 (210)
T ss_dssp SSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEEEC
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEEEe
Confidence 345677888888999999999999875 45566 45666543
No 62
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=68.74 E-value=1.9 Score=33.06 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=26.1
Q ss_pred CccceeeccCcHHHHHH-HHHhCCeEEEecC
Q psy11065 54 AAVGVVIGKGGDMIKKL-QNETGARVQFVQM 83 (138)
Q Consensus 54 ~~vg~IIGk~G~~Ik~I-~~~Tga~I~I~~~ 83 (138)
+-+|..||++|.+|+.| ++-.|-+|.|-.-
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 156 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY 156 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEe
Confidence 56799999999999999 7777899999663
No 63
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=67.79 E-value=1.9 Score=32.47 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEE
Q psy11065 6 FQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQ 79 (138)
Q Consensus 6 ~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~ 79 (138)
.+.|++.+.++++... ++..-...- ......+.+.|..+..|.+||+.|.++..||.-+..-++
T Consensus 63 ~~~a~~~L~~ll~~m~-~~~~i~~~~---------~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMN-MAVDISVEY---------NETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHHHTT-CCCEEEEEE---------ETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCeEEEEEE---------ecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3578889999888643 210000000 000134677777888999999999999999988865443
No 64
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=67.70 E-value=2.3 Score=32.51 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=25.9
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHH
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~ 73 (138)
++...++.|....-|.|||++|..|++|++.
T Consensus 45 ~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 45 TPTKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CSSCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4566888899999999999999999886653
No 65
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=66.29 E-value=1.8 Score=32.99 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHH
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQN 72 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~ 72 (138)
+...++.|....-|.|||++|..|++|++
T Consensus 43 ~~~i~I~I~t~rPg~VIGkkG~~I~~L~~ 71 (240)
T 3u5c_D 43 PTKTEVIIRATRTQDVLGENGRRINELTL 71 (240)
T ss_dssp SSCEEEEEEESCHHHHHTTTTCTHHHHHH
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 44578888888999999999999977654
No 66
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=66.20 E-value=2.6 Score=34.07 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=27.0
Q ss_pred CccceeeccCcHHHHHHHHHh-CCeEEEecC
Q psy11065 54 AAVGVVIGKGGDMIKKLQNET-GARVQFVQM 83 (138)
Q Consensus 54 ~~vg~IIGk~G~~Ik~I~~~T-ga~I~I~~~ 83 (138)
+-+|..||++|.+|+.|.++. |-+|.|-.-
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 279 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY 279 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc
Confidence 568999999999999999999 899999763
No 67
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=65.76 E-value=1.7 Score=32.80 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.7
Q ss_pred ccceEEEEEecCCccceeeccCcHHHHHHHH
Q psy11065 42 VTWEVIQVCVPKAAVGVVIGKGGDMIKKLQN 72 (138)
Q Consensus 42 ~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~ 72 (138)
.++...++.|....-|.|||++|..|++|++
T Consensus 41 R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 41 VTPMRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp EETTEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred EcCCcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3456788889999999999999999987544
No 68
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=65.14 E-value=1.7 Score=33.92 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=45.0
Q ss_pred EEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEec-CHHHHHHHHHHHHH
Q psy11065 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSG-SPDQVQEARARIEE 111 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G-~~e~i~~A~~~I~~ 111 (138)
.-|.||..++.+++++.+..++.|.+.+++.|.+-. +-.|+|.+ ++.....+...|..
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~-------NG~IWI~~~~~~~~~~i~~aI~~ 270 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGM-------NGRIWVKAKTIQQTLILANILEA 270 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEET-------TTEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEEC-------CcEEEEecCChhHHHHHHHHHHH
Confidence 678899999999999999999999888999999977 44678875 45444444444443
No 69
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=64.68 E-value=0.56 Score=35.82 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=33.4
Q ss_pred EEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCCCCCcEEEEec
Q psy11065 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSG 97 (138)
Q Consensus 47 ~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~~~~r~i~i~G 97 (138)
.-+.++...+.+++|+++..++.|.+.+++.|.+-. +-.|+|.+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-------NG~IWi~~ 200 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN-------NGRIWATC 200 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEECT-------TSEEEC--
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEEC-------CcEEEEeC
Confidence 466899999999999999999999989999998866 34577764
No 70
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=62.59 E-value=2.1 Score=32.71 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=26.0
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHH
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~ 73 (138)
++...++.|....-|.|||++|..|++|++.
T Consensus 42 t~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 42 TPTRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp ETTEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred cCCcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 4567888888899999999999999886654
No 71
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=62.20 E-value=4.8 Score=30.80 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=25.1
Q ss_pred eEEEEEecCC-ccceeeccCcHHHHHHH--------HHhCCeEEE
Q psy11065 45 EVIQVCVPKA-AVGVVIGKGGDMIKKLQ--------NETGARVQF 80 (138)
Q Consensus 45 ~~~~i~IP~~-~vg~IIGk~G~~Ik~I~--------~~Tga~I~I 80 (138)
....+.|..+ .-+.|||++|+.||+|. +..+++|.+
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4455566655 44889999999998664 456666655
No 72
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=61.11 E-value=1.6 Score=32.45 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=27.2
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHH----HHhCCeEEE
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQ----NETGARVQF 80 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~----~~Tga~I~I 80 (138)
+...++.|....-|.|||++|..|++|+ +.++..++|
T Consensus 60 ~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 60 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred CCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 3446777777888999999999997754 567755444
No 73
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=60.68 E-value=3.3 Score=27.28 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHhhcCC
Q psy11065 4 IEFQQSRRWQQGIGRNND 21 (138)
Q Consensus 4 ~~~~~ak~~v~~i~~~~~ 21 (138)
.++++|+++|++++....
T Consensus 65 e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 65 DRCEHAARIINDLLQSLR 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 468999999999998653
No 74
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=59.37 E-value=2 Score=32.60 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=25.7
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHH----HHhCCe
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQ----NETGAR 77 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~----~~Tga~ 77 (138)
+...++.|....-|.|||++|..|++|+ +.++..
T Consensus 61 ~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~ 98 (233)
T 3i1m_C 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVP 98 (233)
T ss_dssp SSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSC
T ss_pred CCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCc
Confidence 3456777788888999999999997754 456644
No 75
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=55.99 E-value=3.2 Score=31.55 Aligned_cols=30 Identities=43% Similarity=0.660 Sum_probs=23.5
Q ss_pred ceEEEEEecCCccceeeccCcHHHHHHHHH
Q psy11065 44 WEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73 (138)
Q Consensus 44 ~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~ 73 (138)
+...++.|-...-|.|||++|..|++|++.
T Consensus 61 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 61 ADNVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp SSCBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred CCeEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 345667777788899999999999877554
No 76
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=51.92 E-value=2.6 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=23.6
Q ss_pred cceEEEEEecCCccceeeccCcHHHHHHHHH
Q psy11065 43 TWEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73 (138)
Q Consensus 43 ~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~ 73 (138)
++...++.|....-+.|||++|..|++|++.
T Consensus 68 ~~~~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 68 RIDLIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp SSSCBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred cCCeEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 3455667777788899999999999876543
No 77
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=46.13 E-value=6 Score=30.31 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=19.8
Q ss_pred CccceeeccCcHHHHHH--------HHHhCCeEEE
Q psy11065 54 AAVGVVIGKGGDMIKKL--------QNETGARVQF 80 (138)
Q Consensus 54 ~~vg~IIGk~G~~Ik~I--------~~~Tga~I~I 80 (138)
+..+.|||++|++||+| ++-.+++|.+
T Consensus 240 ~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 240 SQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 34488999999999865 4456666655
No 78
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=43.02 E-value=41 Score=21.59 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=40.8
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCC-----CCCcEEEEecCHHHHHHHHHHHHHH
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDD-----PSDRRCMLSGSPDQVQEARARIEEL 112 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~-----~~~r~i~i~G~~e~i~~A~~~I~~i 112 (138)
...++..+.+.+ ..--|.++.+++++.++|-...-.. -+.=++.+.|+.+++.+|.+.+++.
T Consensus 22 ~lvrL~f~g~~~------~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 22 PMLRLEFTGQSV------DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp EEEEEEEEEECT------TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred eEEEEEEcCCcc------ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 445555544332 2346789999999999987643211 1123566899999999998887653
No 79
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=38.25 E-value=12 Score=29.81 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=25.9
Q ss_pred CccceeeccCcHHHHHHHHHh-CCeEEEec
Q psy11065 54 AAVGVVIGKGGDMIKKLQNET-GARVQFVQ 82 (138)
Q Consensus 54 ~~vg~IIGk~G~~Ik~I~~~T-ga~I~I~~ 82 (138)
+-+|..||.+|.+|+.|.++. |-+|.|-.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 567999999999999999998 78898865
No 80
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=27.06 E-value=19 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=18.0
Q ss_pred EEEEecC-CccceeeccCcHHHHHHHHH
Q psy11065 47 IQVCVPK-AAVGVVIGKGGDMIKKLQNE 73 (138)
Q Consensus 47 ~~i~IP~-~~vg~IIGk~G~~Ik~I~~~ 73 (138)
..+.|.. ..-+.|||++|..||+|-.+
T Consensus 233 ~~i~v~~~~~k~i~ig~~G~~~k~ig~~ 260 (301)
T 1ega_A 233 GLILVEREGQKKMVIGNKGAKIKTIGIE 260 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEECCceEEEECCCcHHHHHHHHH
Confidence 3444432 34488999999999876443
No 81
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=25.64 E-value=80 Score=17.60 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=20.9
Q ss_pred EecCHHHHHHHHHHHHHHHHhhhhc
Q psy11065 95 LSGSPDQVQEARARIEELIDSVMVE 119 (138)
Q Consensus 95 i~G~~e~i~~A~~~I~~ii~~~~~~ 119 (138)
.+++|+.++.|-.+|...+.+.+.+
T Consensus 18 ~s~~P~Dlq~AN~LiK~mv~edq~r 42 (45)
T 1j2j_B 18 KSSHPEDLRAANKLIKEMVQEDQKR 42 (45)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HcCChhhHHHHHHHHHHHhhHHHHH
Confidence 4678999999999999999886654
No 82
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=24.95 E-value=1.4e+02 Score=25.26 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCCCCCccceEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEec
Q psy11065 5 EFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQ 82 (138)
Q Consensus 5 ~~~~ak~~v~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~ 82 (138)
+-+.|++.+.+++..-.+..+-+ + .+.+-++.+-..+-|.++|+.|.++++|.++++-+-.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 144 (651)
T 3af5_A 81 PPEEAEKLIFEIVPKEAEITNIA-F-------------DPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVR 144 (651)
T ss_dssp CHHHHHHHHHHHSCGGGCCCEEE-E-------------ETTTTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHhCCCccCcccee-e-------------cCCCceEEEEECCCCccccccchhHHHHhhccCccccccc
Confidence 35789999999986533320000 0 0012255555566689999999999999999998766655
No 83
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=23.55 E-value=1.3e+02 Score=20.47 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=24.5
Q ss_pred CeEEEecCCCCCCCCcEEEEecCHHHHHHHHHHHHHH
Q psy11065 76 ARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEEL 112 (138)
Q Consensus 76 a~I~I~~~~~~~~~~r~i~i~G~~e~i~~A~~~I~~i 112 (138)
.+|.+++. ...+++.|+++.+..+.++|..+
T Consensus 136 g~v~~d~~------tN~liv~~~~~~i~~i~~li~~l 166 (175)
T 2y3m_A 136 GSITFDDR------SNLLLIQDEPRSVRNIKKLIKEL 166 (175)
T ss_dssp CEEEEETT------TTEEEEEECHHHHHHHHHHHHHH
T ss_pred ceEEEECC------CCEEEEEcCHHHHHHHHHHHHHh
Confidence 36666653 45799999999999999988765
No 84
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=23.28 E-value=2.7e+02 Score=21.86 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=33.3
Q ss_pred ccCcHHHHHHHHH----hCCe-EEEecCCCCCCCCcEEEEecCHHHHHH-HHHHHHHHHHh
Q psy11065 61 GKGGDMIKKLQNE----TGAR-VQFVQMREDDPSDRRCMLSGSPDQVQE-ARARIEELIDS 115 (138)
Q Consensus 61 Gk~G~~Ik~I~~~----Tga~-I~I~~~~~~~~~~r~i~i~G~~e~i~~-A~~~I~~ii~~ 115 (138)
|+.-+.|..|.+. .||+ +++..+.+.+ -.++|+.|+++.+.. |..++...+..
T Consensus 13 GR~~~vIe~I~~a~~~~~gv~LLd~~~D~~~N--Rsv~T~vg~pe~v~eaa~~~~~~A~el 71 (325)
T 1qd1_A 13 GKNQEVIDAISRAVAQTPGCVLLDVDSGPSTN--RTVYTFVGRPEDVVEGALNAARAAYQL 71 (325)
T ss_dssp SSCHHHHHHHHHHHHTSTTCEEEEEEEETTTT--EEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCC--CceEEEccChHHHHHHHHHHHHHHHHh
Confidence 6666677666654 4676 4665554442 466789999998865 45555544443
No 85
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.44 E-value=1.1e+02 Score=19.09 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=40.8
Q ss_pred eEEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCC----C-CCcEEEEecCHHHHHHHHHHHHH
Q psy11065 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDD----P-SDRRCMLSGSPDQVQEARARIEE 111 (138)
Q Consensus 45 ~~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~----~-~~r~i~i~G~~e~i~~A~~~I~~ 111 (138)
..+++..+.+.+ ..--|.++.+++++.++|-...-.. + +.=++.+.|+.+.+.+|...+.+
T Consensus 24 ~lv~l~f~g~~~------~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (100)
T 2qsw_A 24 KIVRLLFHGEQA------KLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 89 (100)
T ss_dssp EEEEEEEESCSC------SSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCc------CchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 356666665543 3456789999999999887643111 1 13345579999999988877754
No 86
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=20.89 E-value=1.1e+02 Score=19.15 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=40.6
Q ss_pred EEEEEecCCccceeeccCcHHHHHHHHHhCCeEEEecCCCCC----C-CCcEEEEecCHHHHHHHHHHHHH
Q psy11065 46 VIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDD----P-SDRRCMLSGSPDQVQEARARIEE 111 (138)
Q Consensus 46 ~~~i~IP~~~vg~IIGk~G~~Ik~I~~~Tga~I~I~~~~~~~----~-~~r~i~i~G~~e~i~~A~~~I~~ 111 (138)
..++..+.+.+ ..--|.++.+++++.++|-...-.. + +.=++.+.|+.+.+.+|...+++
T Consensus 25 lv~l~f~g~~~------~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATV------DAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSC------SSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCc------CchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 56666665544 3456789999999999887643111 1 13345579999999988877754
No 87
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=20.21 E-value=47 Score=17.01 Aligned_cols=18 Identities=0% Similarity=-0.049 Sum_probs=14.0
Q ss_pred CcchhHHHHHHHHHHHhh
Q psy11065 1 MCSIEFQQSRRWQQGIGR 18 (138)
Q Consensus 1 ~~~~~~~~ak~~v~~i~~ 18 (138)
||+...++.|++|.+.+.
T Consensus 7 ~Ad~qse~vKk~vfdtLk 24 (31)
T 1qey_A 7 LADEQSELVKKMVFDTLK 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466778888899988775
No 88
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, hydrolase manganese; 1.85A {Escherichia coli} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A*
Probab=20.12 E-value=2.4e+02 Score=22.34 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=30.4
Q ss_pred cHHHHHHHHHhCCeEEEecCCC---------CCCC-CcEEEEecCHHHHHHHHHH
Q psy11065 64 GDMIKKLQNETGARVQFVQMRE---------DDPS-DRRCMLSGSPDQVQEARAR 108 (138)
Q Consensus 64 G~~Ik~I~~~Tga~I~I~~~~~---------~~~~-~r~i~i~G~~e~i~~A~~~ 108 (138)
-..|++|+ ++|++|.+-.+.+ +.++ +-.+=+-|.||.|..|..+
T Consensus 170 ~~lI~eiR-~~GArI~li~DGDVa~ai~~~~~~sgvD~~~GiGGAPEGVlaAaAl 223 (338)
T 3big_A 170 DAVIAEMQ-QLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVI 223 (338)
T ss_dssp HHHHHHHH-HHTCEEEEESSCSHHHHHHTTCTTSSCCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCeEEEeCCccHHHHHHHhcCCCCeeEEEECCCChHHHHHHHHH
Confidence 45567774 7899998877653 2222 4556688999999887653
Done!