Your job contains 1 sequence.
>psy11065
MCSIEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVI
GKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQ
FSGANFDKLRSTVLANRS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11065
(138 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0014870 - symbol:Psi "P-element somatic inhibitor"... 148 2.8e-09 1
UNIPROTKB|Q7JPS0 - symbol:Psi "PSI" species:7242 "Drosoph... 146 4.5e-09 1
WB|WBGene00007534 - symbol:C12D8.1 species:6239 "Caenorha... 110 7.4e-07 2
UNIPROTKB|Q17936 - symbol:C12D8.1 "Protein C12D8.1, isofo... 110 7.4e-07 2
ZFIN|ZDB-GENE-030131-4357 - symbol:khsrp "KH-type splicin... 116 5.7e-06 1
UNIPROTKB|C9JSZ1 - symbol:FUBP1 "Far upstream element-bin... 89 0.00011 2
UNIPROTKB|F1MX51 - symbol:FUBP1 "Uncharacterized protein"... 103 0.00012 1
RGD|1591892 - symbol:Fubp1 "far upstream element (FUSE) b... 103 0.00013 1
UNIPROTKB|Q32PX7 - symbol:Fubp1 "Far upstream element-bin... 103 0.00013 1
UNIPROTKB|J9P014 - symbol:FUBP1 "Uncharacterized protein"... 103 0.00014 1
UNIPROTKB|E1BX03 - symbol:FUBP1 "Uncharacterized protein"... 103 0.00014 1
UNIPROTKB|F1S9S5 - symbol:FUBP1 "Uncharacterized protein"... 103 0.00014 1
MGI|MGI:1196294 - symbol:Fubp1 "far upstream element (FUS... 103 0.00014 1
UNIPROTKB|E2RJQ2 - symbol:FUBP1 "Uncharacterized protein"... 103 0.00014 1
UNIPROTKB|F1S9S9 - symbol:FUBP1 "Uncharacterized protein"... 103 0.00015 1
ZFIN|ZDB-GENE-040426-2159 - symbol:fubp1 "far upstream el... 101 0.00022 1
UNIPROTKB|F1NV59 - symbol:FUBP1 "Uncharacterized protein"... 99 0.00036 1
UNIPROTKB|Q96AE4 - symbol:FUBP1 "Far upstream element-bin... 99 0.00036 1
UNIPROTKB|E9PEB5 - symbol:FUBP1 "Far upstream element-bin... 99 0.00037 1
UNIPROTKB|B4DT31 - symbol:FUBP1 "cDNA FLJ53425, highly si... 99 0.00038 1
WB|WBGene00022738 - symbol:ZK418.9 species:6239 "Caenorha... 98 0.00039 1
UNIPROTKB|D4A6P8 - symbol:Fubp3 "Protein Fubp3" species:1... 92 0.00060 1
RGD|1307004 - symbol:Fubp3 "far upstream element (FUSE) b... 95 0.00083 1
>FB|FBgn0014870 [details] [associations]
symbol:Psi "P-element somatic inhibitor" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685
"U1 snRNP" evidence=IPI] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IDA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003729
GO:GO:0006397 GO:GO:0007283 GO:GO:0048025 GO:GO:0000381
EMBL:AL031863 InterPro:IPR015096 Pfam:PF09005 HSSP:Q96AE4
FlyBase:FBgn0014870 PIR:T13690 ProteinModelPortal:O96828 SMR:O96828
STRING:O96828 PRIDE:O96828 InParanoid:O96828 ArrayExpress:O96828
Bgee:O96828 Uniprot:O96828
Length = 806
Score = 148 (57.2 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 36/108 (33%), Positives = 54/108 (50%)
Query: 13 QQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDMIKKLQN 72
Q G G G FN +G GG E +V DMI+K+Q
Sbjct: 303 QGGRGGGGGGGGPGMGFNNFNNGNGG------ESTEVFVPKIAVGVVIGKGGDMIRKIQT 356
Query: 73 ETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQ 120
E G ++QF+Q + D+ DRRC++ G+ QV +A+ I+ LI++VMV +
Sbjct: 357 ECGCKLQFIQGKNDEMGDRRCVIQGTRQQVDDAKRTIDGLIENVMVSR 404
>UNIPROTKB|Q7JPS0 [details] [associations]
symbol:Psi "PSI" species:7242 "Drosophila sp." [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IMP] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA;IMP] [GO:0005685 "U1 snRNP" evidence=IPI]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003729 GO:GO:0006397
GO:GO:0007283 GO:GO:0048025 GO:GO:0000381 InterPro:IPR015096
Pfam:PF09005 PDB:2BN5 PDBsum:2BN5 FlyBase:FBgn0014870 EMBL:S75665
PDB:2BN6 PDBsum:2BN6 ProteinModelPortal:Q7JPS0 SMR:Q7JPS0
InParanoid:Q7JPS0 EvolutionaryTrace:Q7JPS0 Uniprot:Q7JPS0
Length = 796
Score = 146 (56.5 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 38/113 (33%), Positives = 56/113 (49%)
Query: 13 QQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDMIKKLQN 72
Q G G G FN +G GG E +V DMI+K+Q
Sbjct: 290 QGGRGGGGGGGGPGMGFNNFNNGNGG------ESTEVFVPKIAVGVVIGKGGDMIRKIQT 343
Query: 73 ETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGAN 125
E G ++QF+Q + D+ DRRC++ G+ QV +A+ I+ LI++VM Q +G N
Sbjct: 344 ECGCKLQFIQGKNDEMGDRRCVIQGTRQQVDDAKRTIDGLIENVM--QRNGMN 394
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 110 (43.8 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSD-RRC-MLSGSPDQVQEARARIEELIDSVMVEQFS 122
D IK+L ETG ++QF +DDPS RC ++ G+ DQ+ A RI EL+ ++Q
Sbjct: 269 DTIKRLAMETGTKIQFKP--DDDPSTPERCAVIMGTRDQIYRATERITELVKKSTMQQGG 326
Query: 123 GAN 125
G N
Sbjct: 327 GGN 329
Score = 36 (17.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 30 NENGDGRGG 38
N GDG GG
Sbjct: 225 NSGGDGNGG 233
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 110 (43.8 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSD-RRC-MLSGSPDQVQEARARIEELIDSVMVEQFS 122
D IK+L ETG ++QF +DDPS RC ++ G+ DQ+ A RI EL+ ++Q
Sbjct: 269 DTIKRLAMETGTKIQFKP--DDDPSTPERCAVIMGTRDQIYRATERITELVKKSTMQQGG 326
Query: 123 GAN 125
G N
Sbjct: 327 GGN 329
Score = 36 (17.7 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 30 NENGDGRGG 38
N GDG GG
Sbjct: 225 NSGGDGNGG 233
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 116 (45.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 39/123 (31%), Positives = 57/123 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMR-EFNEN---GDGRGGMWEVTWEVIQVCXXXXXXXXXXXX 62
QQ+R Q I R D+ G R E+ G G GG I+V
Sbjct: 252 QQAREMVQEILRERDHPGFERNEYGSRMGGGGGGGGGGGGGGGGIEVPVPRHSVGVVIGR 311
Query: 63 XXDMIKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSVMVEQ 120
+MIKK+QN+ G R+QF + DD + D+ + G PD+ + A + I EL+ S+ V +
Sbjct: 312 SGEMIKKIQNDAGVRIQF---KPDDGTGPDKIAHIMGPPDRCEHAASIINELLQSIRVRE 368
Query: 121 FSG 123
G
Sbjct: 369 EGG 371
>UNIPROTKB|C9JSZ1 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 IPI:IPI00641948
ProteinModelPortal:C9JSZ1 SMR:C9JSZ1 STRING:C9JSZ1 PRIDE:C9JSZ1
Ensembl:ENST00000421641 HOGENOM:HOG000110867 ArrayExpress:C9JSZ1
Bgee:C9JSZ1 Uniprot:C9JSZ1
Length = 232
Score = 89 (36.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELID 114
+ I ++Q E+G ++Q P +R CML+G+P+ VQ A+ ++++++
Sbjct: 141 EQISRIQQESGCKIQIAPDSGGLP-ERSCMLTGTPESVQSAKRLLDQIVE 189
Score = 33 (16.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 IGRNNDNFGNMREFNENGDG 35
+ N+ +G + E+GDG
Sbjct: 53 LNSNDYGYGGQKRPLEDGDG 72
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 202 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 254
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 255 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 303
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 240 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 292
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 293 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 341
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 240 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 292
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 293 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 341
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 245 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 297
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 298 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 346
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 244 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 296
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 297 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 345
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 245 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 297
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 298 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 346
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 241 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 293
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 294 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 342
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 268 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 320
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 321 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 369
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 285 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 337
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 338 IKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 386
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
+MIKK+QN+TG R+QF + DD S +R + G PD+ Q A I +L+ SV
Sbjct: 288 EMIKKIQNDTGVRIQF---KPDDGSTPERIAQIMGPPDRAQHAADIITDLLRSV 338
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
+MIKK+QN+ G R+QF + DD + DR ++G PD+ Q A I +L+ SV
Sbjct: 277 EMIKKIQNDAGVRIQF---KPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSV 327
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 35/112 (31%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 245 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 297
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + +R ++G PD+ Q A I +L+ SV
Sbjct: 298 IKKIQNDAGVRIQF---KPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSV 346
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 99 (39.9 bits), Expect = 0.00037, P = 0.00037
Identities = 35/112 (31%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 245 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 297
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + +R ++G PD+ Q A I +L+ SV
Sbjct: 298 IKKIQNDAGVRIQF---KPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSV 346
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 99 (39.9 bits), Expect = 0.00038, P = 0.00038
Identities = 35/112 (31%), Positives = 52/112 (46%)
Query: 7 QQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCXXXXXXXXXXXXXXDM 66
QQ++ + R+ F +R NE G GG E I V +M
Sbjct: 266 QQAKEMVLELIRDQGGFREVR--NEYGSRIGGN-----EGIDVPIPRFAVGIVIGRNGEM 318
Query: 67 IKKLQNETGARVQFVQMREDDPS--DRRCMLSGSPDQVQEARARIEELIDSV 116
IKK+QN+ G R+QF + DD + +R ++G PD+ Q A I +L+ SV
Sbjct: 319 IKKIQNDAGVRIQF---KPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSV 367
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGA 124
+MIK+L ETG ++QF + DR ++ G+ DQ+ A RI E+++ + +GA
Sbjct: 260 EMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATERITEIVNRAIKN--NGA 317
Query: 125 NFDK-LRSTVLANRS 138
D+ TVL +S
Sbjct: 318 PQDRGSAGTVLPGQS 332
>UNIPROTKB|D4A6P8 [details] [associations]
symbol:Fubp3 "Protein Fubp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:AC108321
IPI:IPI00951068 Ensembl:ENSRNOT00000063932 ArrayExpress:D4A6P8
Uniprot:D4A6P8
Length = 277
Score = 92 (37.4 bits), Expect = 0.00060, P = 0.00060
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 66 MIKKLQNETGARVQFVQMREDD--PSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSG 123
MIKK+QN+ G R+QF + DD +R + G PD+ Q A I ELI + + G
Sbjct: 1 MIKKIQNDAGVRIQF---KPDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREILG 57
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 95 (38.5 bits), Expect = 0.00083, P = 0.00083
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 65 DMIKKLQNETGARVQFVQMREDD--PSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFS 122
+MIKK+QN TG R+QF + DD +R + G PD+ Q A I ELI + +
Sbjct: 274 EMIKKIQNGTGVRIQF---KPDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREIL 330
Query: 123 G 123
G
Sbjct: 331 G 331
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 138 124 0.00091 102 3 11 22 0.37 31
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 563 (60 KB)
Total size of DFA: 138 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.98u 0.07s 12.05t Elapsed: 00:00:07
Total cpu time: 11.98u 0.07s 12.05t Elapsed: 00:00:07
Start: Thu Aug 15 13:50:47 2013 End: Thu Aug 15 13:50:54 2013