RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11065
(138 letters)
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 71.8 bits (176), Expect = 2e-18
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQE 104
+I V +P+ AVG+VIG+ G+MIKK+QN+ G R+QF P +R ++G PD+ Q
Sbjct: 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP-ERIAQITGPPDRAQH 61
Query: 105 ARARIEELIDSV 116
A I +L+ SV
Sbjct: 62 AAEIITDLLRSV 73
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 69.1 bits (169), Expect = 3e-17
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDP--SDRRCMLSGSPDQV 102
E++++ VP+ VG ++GKGG + + Q TGAR+Q + E P +RR ++GSP
Sbjct: 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAAT 62
Query: 103 QEARARIEELI 113
Q A+ I + +
Sbjct: 63 QAAQYLISQRV 73
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 68.3 bits (167), Expect = 6e-17
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 48 QVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARA 107
+ VP VG +IG+GG+ I ++Q E+G ++Q P +R CML+G+P+ VQ A+
Sbjct: 11 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP-ERSCMLTGTPESVQSAKR 69
Query: 108 RIEELID 114
++++++
Sbjct: 70 LLDQIVE 76
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 65.6 bits (160), Expect = 5e-16
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
I++ + VG +IGK G+ +KK++ E+GAR+ + + +R L+G + + +A
Sbjct: 6 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISE---GNCPERIITLAGPTNAIFKAF 62
Query: 107 ARIEELID 114
A I + ++
Sbjct: 63 AMIIDKLE 70
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 65.6 bits (160), Expect = 6e-16
Identities = 13/70 (18%), Positives = 30/70 (42%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
+ V V +IG+ G +I +++ E +QF + + + ++G + AR
Sbjct: 12 LSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAAR 71
Query: 107 ARIEELIDSV 116
I ++ +
Sbjct: 72 DAILRIVGEL 81
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 64.9 bits (158), Expect = 1e-15
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDP--SDRRCMLSGSPDQV 102
+ VP G++IGKGG+ IK + ++GAR++ + + + + + G+P Q+
Sbjct: 1 QEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 60
Query: 103 QEARARIEELI 113
AR IEE I
Sbjct: 61 DYARQLIEEKI 71
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 64.3 bits (157), Expect = 2e-15
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
V +PK VIGK G+ ++ L+ +T ++Q D + ++G+ + +++AR
Sbjct: 12 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQI---PRPDDPSNQIKITGTKEGIEKAR 68
Query: 107 ARIEELID 114
+ +
Sbjct: 69 HEVLLISA 76
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 63.7 bits (155), Expect = 3e-15
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 41 EVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPD 100
+ T E+ +P +G +IG+ G I +++ +GA+++ + S R+ ++GS
Sbjct: 1 QTTHELT---IPNNLIGCIIGRQGANINEIRQMSGAQIKIAN-PVEGSSGRQVTITGSAA 56
Query: 101 QVQEARARIEELI 113
+ A+ I +
Sbjct: 57 SISLAQYLINARL 69
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 62.9 bits (153), Expect = 8e-15
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
I+V VP VIG+ G I+K+ +E + + ++G + A+
Sbjct: 12 IEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPA---PELQSDIIAITGLAANLDRAK 68
Query: 107 ARIEELIDSVMVEQ 120
A + E + + EQ
Sbjct: 69 AGLLERVKELQAEQ 82
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 62.2 bits (151), Expect = 1e-14
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
QV +PK G +IGKGG IK++++E+GA ++ + E DR ++G+ DQ+Q A+
Sbjct: 6 TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE-DRIITITGTQDQIQNAQ 64
Query: 107 ARIEELIDSVMVEQFS 122
++ + +Q+S
Sbjct: 65 YLLQNSV-----KQYS 75
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 62.7 bits (152), Expect = 2e-14
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 46 VIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQ-MREDDPSDRRCMLSGSPDQVQE 104
Q+ VP+ +VG +IG+GG+ I+ + +GA++ + R +SG+ +V
Sbjct: 16 FEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 75
Query: 105 ARARIEELIDSVM 117
A+ I E +
Sbjct: 76 AKHLILEKVSEDE 88
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 61.4 bits (149), Expect = 3e-14
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
V + +IG G I+K+ +E ++F + P ++G P+ V+EA
Sbjct: 12 EDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRF--PQSGAPDPNCVTVTGLPENVEEAI 69
Query: 107 ARIEELIDSVM 117
I L + +
Sbjct: 70 DHILNLEEEYL 80
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 61.1 bits (148), Expect = 4e-14
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 32 NGDGRGGMWEVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPS-D 90
+GDG G E++ +P + G+VIGKGG+ IK+LQ G ++ +Q + D
Sbjct: 1 HGDGPG---NAVQEIM---IPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 54
Query: 91 RRCMLSGSPDQVQEARARIEELID 114
+ ++G P +VQ+A+ + ELI
Sbjct: 55 KPLRITGDPYKVQQAKEMVLELIR 78
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 60.5 bits (147), Expect = 5e-14
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
+++ + +IGK G I +++++ V+ D + G P VQ+A+
Sbjct: 7 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP---DSEKSNLIRIEGDPQGVQQAK 63
Query: 107 ARIEELI 113
+ EL
Sbjct: 64 RELLELA 70
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 55.1 bits (133), Expect = 1e-11
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQE 104
++ + A V VIGK G MIK L++E ++ Q + ++G +V
Sbjct: 3 RIVAI--NPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-------NGLIWVNGDRRKVSI 53
Query: 105 ARARIEELID 114
A I +
Sbjct: 54 AEEAIYLIEQ 63
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 53.3 bits (128), Expect = 4e-11
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNE-TGARVQFVQMREDDPSDRRCMLSGSPDQVQEA 105
++V +P +IG G +I+ + E G + F + ++ G V++A
Sbjct: 12 VEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHF---PVEGSGSDTVVIRGPSSDVEKA 68
Query: 106 RARIEELID 114
+ ++ L +
Sbjct: 69 KKQLLHLAE 77
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 51.8 bits (124), Expect = 1e-10
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 48 QVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARA 107
+ V + +G+ IG G I++ + G D+ + + S D V++AR
Sbjct: 11 EFVVREDLMGLAIGTHGSNIQQARKVPGVTAIE----LDEDTGTFRIYGESADAVKKARG 66
Query: 108 RIEELIDSVMV 118
+E + D + V
Sbjct: 67 FLEFVEDFIQV 77
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 49.4 bits (118), Expect = 2e-09
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 47 IQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEAR 106
I V V +G VIG G++ ++ TG + D + + +
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITV-----DTENSMVIVEPEAEGIPPVNL 59
Query: 107 ARIEELIDSV 116
+ E++ ++
Sbjct: 60 MKAAEVVKAI 69
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 47.8 bits (114), Expect = 8e-09
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 53 KAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEEL 112
K G +IG+GG + ++ T + + + G ++ A+ IE L
Sbjct: 21 KRIKGRIIGEGGRARRTIEEMTDTYINV--------GEYEVAIIGDYERAMAAKQAIEML 72
Query: 113 IDSVMV 118
+ M
Sbjct: 73 AEGRMH 78
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 47.5 bits (113), Expect = 8e-09
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 46 VIQVCVPKAAVGVVIGKGGDMIKKLQNE-TGARVQFVQMREDDPSDRRCMLSGSPDQVQE 104
V V P +IGK G + K+ + ++F + + L G + V
Sbjct: 22 VSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEF------TEGEDKITLEGPTEDVSV 75
Query: 105 ARARIEELIDSVM 117
A+ +IE ++ ++
Sbjct: 76 AQEQIEGMVKDLI 88
Score = 25.2 bits (55), Expect = 1.4
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 97 GSPDQVQEARARIEELIDSVMVEQFS 122
G P+++ +A + +S V +
Sbjct: 1 GEPEKLGQALTEVYAKANSFTVSSVA 26
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 45.1 bits (107), Expect = 4e-08
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 51 VPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSG-SPDQVQEARARI 109
+ V VIGK M + L +++G + + R + S + I
Sbjct: 7 IMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN-------NGRIWATCPSRFSEEILIEAI 59
Query: 110 EELIDSVMVE 119
++ + ++
Sbjct: 60 RKIENESHIK 69
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 42.3 bits (100), Expect = 4e-07
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 46 VIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDD 87
+I V +P +G VIG MI ++Q +TGA + EDD
Sbjct: 4 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITI----EDD 41
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 42.0 bits (99), Expect = 9e-07
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 45 EVIQVCVPKAAVGVVIGKGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSG-SPDQVQ 103
+++++ A V VIG+ M+K L+ +T ++ + + R L + D
Sbjct: 3 KIVEI--SPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-------NGRIHLECPNEDLEA 53
Query: 104 EARARIEEL 112
A I+ +
Sbjct: 54 IAVMAIKII 62
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 32.1 bits (73), Expect = 0.009
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 56 VGVVIGKGGDMIKKLQNETGARVQ 79
VG ++G G K+L+ ETG ++
Sbjct: 19 VGRILGPRGLTAKQLEAETGCKIM 42
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 30.6 bits (69), Expect = 0.030
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 56 VGVVIGKGGDMIKKLQNETGARVQ 79
VG++IG G+ +K ++ E A++
Sbjct: 20 VGLLIGPRGNTLKNIEKECNAKIM 43
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 347
Score = 27.8 bits (60), Expect = 0.44
Identities = 16/131 (12%), Positives = 39/131 (29%), Gaps = 3/131 (2%)
Query: 1 MCSIEFQQSRRWQQGIGRNNDNFGNMREFNENGDGRGGMWEVTWEVIQVCVPKAAVGVVI 60
++ + + G + + F+ + D + V + + V +
Sbjct: 203 EVAVPKIEEGAKEAGRSLDEIDVAAYTCFSIDKDEDKAIEATKIVVAFIVMGSPDVVLER 262
Query: 61 GKGGDMIKKLQNETGARVQFVQMREDDPSD--RRCMLSGSPDQVQEARARIEEL-IDSVM 117
+ E + F D ++G PD V + + + + V+
Sbjct: 263 HGIDTEKAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIAGDPDTVVDKIEELLKAGVTQVV 322
Query: 118 VEQFSGANFDK 128
V G + +K
Sbjct: 323 VGSPIGPDKEK 333
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 328
Score = 27.5 bits (61), Expect = 0.51
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 79 QFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119
F R D P +C + + +EA ++ LI +
Sbjct: 232 YFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKD 272
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 328
Score = 27.6 bits (61), Expect = 0.53
Identities = 5/41 (12%), Positives = 16/41 (39%)
Query: 79 QFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVE 119
+ + R + C + +EA A+ + + ++ +
Sbjct: 230 EVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKD 270
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 26.7 bits (59), Expect = 0.56
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 41 EVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73
E + + V V A GVVIG+GG+ I+ L+ E
Sbjct: 57 ERAADNVAVTVHVAKPGVVIGRGGERIRVLREE 89
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF)
domain from elongation factor-1 beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 25.8 bits (57), Expect = 0.88
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 16/56 (28%)
Query: 67 IKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFS 122
IKKLQ + V EDD S D +Q++ E+ + S +
Sbjct: 49 IKKLQ------INCV--VEDD--------KVSLDDLQQSIEEDEDHVQSTDIAAMQ 88
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF)
domain from elongation factor-1 beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 25.8 bits (57), Expect = 0.92
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 16/56 (28%)
Query: 67 IKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFS 122
IKKLQ +Q V EDD D ++E E+ + S+ V F+
Sbjct: 50 IKKLQ------IQCV--VEDD--------KVGTDMLEEQITAFEDYVQSMDVAAFN 89
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
missouriensis [TaxId: 1866]}
Length = 392
Score = 26.1 bits (57), Expect = 1.8
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGA 124
KK +ETG V V + S D+ A I +++ + + GA
Sbjct: 71 AGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYA-IRKVLRQMDLGAELGA 129
Query: 125 N 125
Sbjct: 130 K 130
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 24.0 bits (52), Expect = 4.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 41 EVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73
E + I+V + A G+VIGK G+ ++KL+
Sbjct: 57 ERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKV 89
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 92
Score = 23.9 bits (52), Expect = 4.4
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 41 EVTWEVIQVCVPKAAVGVVIGKGGDMIKKLQNE 73
VT ++ + V+G+ G I++L
Sbjct: 31 RVTPTRTEIIILATRTQNVLGEKGRRIRELTAV 63
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 24.0 bits (51), Expect = 4.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 114 DSVMVEQFSGANFDKLRSTVLANRS 138
++ +V + +GA +DKL + A RS
Sbjct: 88 ENSVVGEVTGAKYDKLLEAIQAARS 112
>g2ai4.1 b.6.1.7 (A:6-116,B:117-124) Hypothetical protein SO1698
{Shewanella oneidensis [TaxId: 70863]}
Length = 119
Score = 24.0 bits (52), Expect = 4.9
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 57 GVVIGKGGDMIKKLQNETGARVQFV 81
+ + + G + L ++T ++FV
Sbjct: 32 DITVTQAGTITYLLNDQTLKGLKFV 56
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 24.7 bits (52), Expect = 5.4
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 86 DDPSDRRCMLSGSPDQVQEARARIEEL-IDSVMVEQFSGANFDK 128
DD + G+PD+ + E+ + + G + +K
Sbjct: 266 DDALMEAFSVVGTPDEFIPKIEALGEMGVTQYVAGSPIGPDKEK 309
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio
harveyi [TaxId: 669]}
Length = 320
Score = 24.5 bits (52), Expect = 5.6
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 91 RRCMLSGSPDQVQEARARIEEL--IDSVMVEQFSGANFDKLRSTV 133
G+ ++ +A E +++ S + + R+ +
Sbjct: 268 LSENAIGTYEESTQAARVAIECCGAADLLMSFESMEDKAQQRAVI 312
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 260
Score = 24.3 bits (52), Expect = 5.7
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 93 CMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLA 135
L+ + EAR +EE I SGA ++ + A
Sbjct: 210 VYLAEKAPSLDEARRLLEEAIR-------SGAAIAAFKTFLAA 245
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 24.5 bits (53), Expect = 6.0
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQVQEARARIEELIDSVMVEQFSGA 124
++ + TG V + + D+ A + + I ++ + GA
Sbjct: 72 KRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYA-LRKTIRNIDLAVELGA 130
Query: 125 N 125
Sbjct: 131 K 131
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.0 bits (51), Expect = 7.2
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 62 KGGDMIKKLQNETGARVQFVQMREDDPSDRRCMLSGSPDQ 101
G ++ E G V + +++ R +S
Sbjct: 26 TSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS 65
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium
thermosulfurogenes, also known as Thermoanaerobacter
thermosulfurigenes [TaxId: 33950]}
Length = 437
Score = 24.0 bits (52), Expect = 7.5
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 65 DMIKKLQNETGARVQFVQMREDDPSDRR----CMLSGSPDQVQEARARIEELID 114
MIK + +V + S+ R S + D + A++++ ++
Sbjct: 123 AMIKDYLKTSKTKVLWGTANLF--SNPRFVHGASTSCNADVFAYSAAQVKKALE 174
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 24.0 bits (50), Expect = 8.4
Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 82 QMREDDPSDRRCMLSGSPDQVQEARARIEELID 114
+ D M + +++ IE +
Sbjct: 270 NLVHCDTIKENYMCATDAEEM---IKEIERFKE 299
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 23.9 bits (51), Expect = 8.5
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 93 CMLSGSPDQVQEARARIEELIDSVMVEQFSGANFDKLRSTVLA 135
+ EARA+++ ++D +G + V A
Sbjct: 214 LISGKLAKDDAEARAKLQAVLD-------NGKAAEVFGRMVAA 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,040
Number of extensions: 23366
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 53
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)