BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11066
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
L EL+++F D VV LKVDVDE EDIAM Y+ISSMPTFVF+K+ KVE+F+GAN +L
Sbjct: 47 LVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDV 106
Query: 65 VLAN 68
+ AN
Sbjct: 107 IKAN 110
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
L EL+++F D VV LKVDVDE EDIAM Y+ISSMPTFVF+K+ KVE+F+GAN +L
Sbjct: 42 LVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDV 101
Query: 65 VLAN 68
+ AN
Sbjct: 102 IKAN 105
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+EL+ DVVFLKVDVDE EDIA I+ MPTF+F+K+ K++ SGAN+DKL V
Sbjct: 42 LEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKLLELV 101
Query: 66 LANR 69
N+
Sbjct: 102 EKNK 105
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
++ LA E P+V F KVDVD++E+ A Y +++MPTFVF+K +V++FSGAN KLR T+
Sbjct: 41 VEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETI 100
Query: 66 LANR 69
++
Sbjct: 101 TRHK 104
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+ E A +FP +FLKVDVDE +D+A AY++ +MPTF+F+K KV+ G D + +
Sbjct: 49 VFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTK 108
Query: 65 VLA 67
++A
Sbjct: 109 IVA 111
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+S+D+A ++ SMPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 45/64 (70%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+ E A +FP VFLKVDVDE +++A Y++ +MPTF+F+K A+ ++ GA D L++T
Sbjct: 57 VFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNT 116
Query: 65 VLAN 68
++ +
Sbjct: 117 IVKH 120
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ SMPTF F K KV +FSGAN +KL +T+
Sbjct: 53 FHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ SMPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ SMPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ MPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ MPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ MPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ MPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDV++ +D+A ++ MPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ PTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+++D+A ++ + PTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+++D+A ++ + PTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+ ELA +FP+V FLKVDVDE + +A +++ +MPTF+F+K V++ GA+ D L +
Sbjct: 47 IFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTL 106
Query: 65 VLANRS 70
V + +
Sbjct: 107 VAKHAT 112
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+LA + P+V+FLKVD DE + +A + I +MPTF+F+K +++ GA D+L+ST+
Sbjct: 62 DLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+++ELA+++P V F K++ +ES+DIAM Y I S+PT +F K+ V+Q GA
Sbjct: 44 VIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMFFKNGELVDQILGA 95
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ A ++ D F K+DVDE D+A ++SSMPT +F K +V + GAN ++
Sbjct: 40 MIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQA 99
Query: 65 VLAN 68
+ +N
Sbjct: 100 IASN 103
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ A ++ D F K+DVDE D+A ++SSMPT +F K +V + GAN ++
Sbjct: 48 MIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQA 107
Query: 65 VLAN 68
+ +N
Sbjct: 108 IASN 111
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ A ++ D F K+DVDE D+A ++SSMPT +F K +V + GAN ++
Sbjct: 47 MIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQA 106
Query: 65 VLAN 68
+ +N
Sbjct: 107 IASN 110
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ A ++ D F K+DVDE D+A ++SSMPT +F K +V + GAN ++
Sbjct: 40 MIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQA 99
Query: 65 VLAN 68
+ +N
Sbjct: 100 IASN 103
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
L +L +PDV F+K DVDES DIA ++++MPTFV K + + GAN
Sbjct: 52 LTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGAN 103
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
++ ELA E P V F+K++ + +++ Y+ISS+PTF+F K++ K+++ GA+ +L
Sbjct: 59 VMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKK 118
Query: 65 VLANRS 70
V + S
Sbjct: 119 VQRHAS 124
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
++ ELA E P V F+K++ + +++ Y+ISS+PTF+F K++ K+++ GA+ +L
Sbjct: 53 VMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKK 112
Query: 65 VLANRS 70
V + S
Sbjct: 113 VQRHAS 118
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+ +EL+ ++ D +F+KVDVD+ E+ A Y+IS+MPTF+ +K+ KV GA+ K+
Sbjct: 45 LFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDM 103
Query: 65 V 65
+
Sbjct: 104 I 104
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+ +EL+ ++ D +F+KVDVD+ E+ A Y+IS+MPTF+ +K+ KV GA+ K+
Sbjct: 54 LFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDM 112
Query: 65 V 65
+
Sbjct: 113 I 113
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLA 67
EL+ +P ++FL +DVDE D + +++I + PTF F++ +V++ GAN +L + A
Sbjct: 70 ELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITA 129
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLA 67
EL+ +P ++FL +DVDE D + +++I + PTF F++ +V++ GAN +L + A
Sbjct: 70 ELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITA 129
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+LA +FP+ VFLKVDVDE + IA + + +MPTF+F+K ++ GA ++L + V
Sbjct: 58 DLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+LA +FP+ VFLKVDVDE + IA + + +MPTF+F+K ++ GA ++L + V
Sbjct: 61 DLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 118
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 QELASEFPDVVFLKVDVD-ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
++LA E+ DV+FLK+D + E++ +A I +PTF +K + V + +GA +DKL +
Sbjct: 60 EKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 119
Query: 66 LANRS 70
A RS
Sbjct: 120 QAARS 124
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 QELASEFPDVVFLKVDVD-ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
++LA E+ DV+FLK+D + E++ +A I +PTF +K + V + +GA +DKL +
Sbjct: 48 EKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 107
Query: 66 LANRS 70
A RS
Sbjct: 108 QAARS 112
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ + ++P F K+DVDE D+A ++S+MPT + K+ +V + GAN ++
Sbjct: 45 MIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQA 104
Query: 65 VLAN 68
+ AN
Sbjct: 105 IAAN 108
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ + ++P F K+DVDE D+A ++S+MPT + K+ +V + GAN ++
Sbjct: 39 MIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQA 98
Query: 65 VLAN 68
+ AN
Sbjct: 99 IAAN 102
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ + ++P F K+DVDE D+A ++S+MPT + K+ +V + GAN ++
Sbjct: 45 MIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQA 104
Query: 65 VLAN 68
+ AN
Sbjct: 105 IAAN 108
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 QELASEFPDVVFLKVDVD-ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
++LA E+ DV+FLK+D + E++ +A I +PTF +K + V + +GA +DKL +
Sbjct: 47 EKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 106
Query: 66 LANRS 70
A RS
Sbjct: 107 QAARS 111
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+++ELA ++P V F K++ DE+ DIA Y + S+PT +F K V++ GA
Sbjct: 37 IIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEIIGA 88
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 9 LASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
+++++P VFL+VDV + + A +IS+ PTF F ++ +++Q+ GA+
Sbjct: 46 MSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGAD 94
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68
V F KVDVDE IA I +MPTFVF K+ K++ GA+ KL++ + +
Sbjct: 67 VGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQH 119
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK----VEQFSGANFDK 60
+L +A DV F+KVDVD++ + A AY +SS+P FVK ++QF GA+ +
Sbjct: 44 ILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSR 103
Query: 61 LRSTV 65
+++ +
Sbjct: 104 IKADI 108
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ MPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+E + + +VF+KVDVDE ++ +I+SMPTF K+ + V+ GAN L+ +
Sbjct: 49 EECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 107
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLR 62
++++A EFP V F KVD D + +I + +PTF+ +S + GAN LR
Sbjct: 59 MEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLR 115
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
L+ ++ +V+FL+VDVD+++D+A Y I +PT + K+
Sbjct: 43 HSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKN 82
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 9 LASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+A + VV KVD+D+ D+A+ Y++S++PT + +K+ V++F G
Sbjct: 57 VAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVG 103
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 MSLVMLQELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
M +L ELA E+ +V KVD ++ +++A A+ I S+P+ +F+ K E GA
Sbjct: 55 MVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGA 111
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ E+A E+ D + +K++ DES ++A Y I S+PT + K K E GA
Sbjct: 40 VVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGA 92
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKL 61
+L+ELA + + +KV+VDE +A Y + S+PT V + A V + GA+ ++
Sbjct: 71 ILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRV 128
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ ELA E+ + K++ DE+ IA Y+I S+PT +F K+ + E GA
Sbjct: 38 VIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGA 90
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ ELA E+ + K++ DE+ IA Y+I S+PT +F K+ + E GA
Sbjct: 39 VIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ ELA E+ + K++ DE+ IA Y+I S+PT +F K+ + E GA
Sbjct: 39 VIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 5 MLQELASEFPDVVFL-KVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
+L+E+A E+ + + K+DVDE+ A Y + S+PT + K VE GA
Sbjct: 40 ILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 5 MLQELASEFPDVVFL-KVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
+L+E+A E+ + + K+DVDE+ A Y + S+PT + K VE GA
Sbjct: 39 ILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQPVEVLVGAQ 92
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 15 DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
+V FL +D DE+ +I+ ++IS++P F+ + +++ SGA+
Sbjct: 54 NVSFLSIDADENSEISELFEISAVPYFIIIHKGTILKELSGAD 96
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ELA+++ LK+DVDE+ A Y++ S+PT + K V++ G
Sbjct: 41 VLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ELA+++ LK+DVDE+ A Y++ S+PT + K V++ G
Sbjct: 41 VLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+EL E D + +K+DVDE+++ A Y + S+PT + +K VE G
Sbjct: 38 VLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVG 89
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ELA+++ LK+DVDE+ A Y++ S+PT + K V++ G
Sbjct: 40 VLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 91
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ELA+++ LK+DVDE+ A Y++ S+PT + K V++ G
Sbjct: 41 VLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+EL E D + +K+DVDE+++ A Y + S+PT + +K VE G
Sbjct: 38 VLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVG 89
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ELA+++ LK+DVDE+ A Y++ S+PT + K V++ G
Sbjct: 40 VLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 91
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+EL E D + +K+DVDE+++ A Y + S+PT + +K VE G
Sbjct: 38 VLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVG 89
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKST---AKVEQFSGAN 57
+ LKVD+D++E +A + + S+PT + +K+ A+ + F +N
Sbjct: 75 IYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSN 119
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 1 MSLVMLQELASEFPDVVFL-KVDVDESEDIAMAYDISSMPTFVFV 44
M +L+EL+ E+ +++ KV+VD+ ++A + I S+PT FV
Sbjct: 68 MVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFV 112
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 33.9 bits (76), Expect = 0.027, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 9 LASEFPD---VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+ EFP+ VVF +VD D+ DIA Y IS PT ++
Sbjct: 51 IKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRN 91
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASE-FPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L+E+A+E D+ K+DVD + + A + + S+PT + K V++ GA
Sbjct: 46 VLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 98
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFP-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L+E+A+E D+ K+DVD + + A + + S+PT + K V++ GA
Sbjct: 51 VLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 103
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASE-FPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L+E+A+E D+ K+DVD + + A + + S+PT + K V++ GA
Sbjct: 48 VLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 100
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 12 EFPDVVFLK---VDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67
EFP + +K VD +I Y + PT + + KV + SG + D L VL+
Sbjct: 50 EFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109
Query: 68 N 68
Sbjct: 110 Q 110
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 12 EFPDVVFLK---VDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67
EFP + +K VD +I Y + PT + + KV + SG + D L VL+
Sbjct: 52 EFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 111
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 MSLVMLQELASEFPDVVFL-KVDVDESEDIAMAYDISSMPTFVFV 44
M +L+EL+ E+ +++ KV+VD+ ++A + I +PT FV
Sbjct: 68 MVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWFV 112
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 12 EFPDVVFLK---VDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67
EFP + +K VD +I Y + PT + + KV + SG + D L VL+
Sbjct: 45 EFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 104
Query: 68 N 68
Sbjct: 105 Q 105
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L E+ EF V KV++D++ + AY + S+PT + V+ +++ GA
Sbjct: 42 LGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGA 93
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTF-VFVKS 46
+EL+ P + KVD E D+A +D+S PT +F K
Sbjct: 51 KELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLKIFRKG 91
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
V+FLKVDVD +A A I++MPTF K K + GA+ DKL++ V
Sbjct: 57 VIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALV 106
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
V+FLKVDVD +A A I++MPTF K K + GA+ DKL++ V
Sbjct: 57 VIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALV 106
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+E A D V K++VDE+ + + I S+PT + K V+Q G
Sbjct: 38 VLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIG 89
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+E A D V K++VDE+ + + I S+PT + K V+Q G
Sbjct: 38 VLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIG 89
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+E A D V K++VDE+ + + I S+PT + K V+Q G
Sbjct: 38 VLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIG 89
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+E A D V K++VDE+ + + I S+PT + K V+Q G
Sbjct: 38 VLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIG 89
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 5 MLQELASEFPDVVFLK-VDVDESEDIAMAYDISSMPTFVF 43
+++E+A+E PD V ++ ++V E+ AM Y I ++PT V
Sbjct: 23 VVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFD 59
V + VD E +++A Y + PTFVF+ A + G F
Sbjct: 57 VASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFG 100
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKS--TAKVEQFS 54
+L +E ++ KVD E D+A Y + PT F ++ TA ++++
Sbjct: 52 KLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYT 100
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 17 VFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65
VF +++VDE++ IA Y + ++PT + + V+ GA + D L STV
Sbjct: 55 VFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTV 104
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 5 MLQELASEFPDVVFLKVDV-DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
+++ELA E+ V + DE+ + A Y I S+PT + K+ V++ GA
Sbjct: 40 IIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTF 41
+EL+ P + KVD D+A +D+S PT
Sbjct: 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL 208
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 6 LQELASEFPDVV-FLKVDVDESEDIAMAYDISSMPTF 41
L+ +A+E+ D + +K+++DE+ A Y + S+PT
Sbjct: 45 LEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTL 81
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L+E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I S+PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLLLFKN 83
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 5 MLQELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ LA+++ + K+D D + IA + + ++PT ++ V+ F G
Sbjct: 47 VLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQG 98
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 61 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 103
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 42 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 84
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFP-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L+ LA+++ + K+D D + IA + + ++PT ++ V+ F G
Sbjct: 47 ILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQG 98
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVK------------STAKVE 51
+L E+A E+ + K+++D++ A Y I +PT + K S +++
Sbjct: 51 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLK 110
Query: 52 QFSGANF--DKLRSTVLANRS 70
+F AN + STV+ R+
Sbjct: 111 EFLDANLAGSAMESTVMVLRN 131
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 41 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKS 46
+L E+A E+ + K+++D++ A Y I +PT + K+
Sbjct: 56 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 98
>pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
Aquifex Aeolicus With Sinefungin
pdb|3AXT|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
Aquifex Aeolicus With S-Adenosyl-L-Methionine
Length = 392
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVF 43
M M + L +EF V +++ + + ++A YDI+ +P F +
Sbjct: 173 MRRYMARPLRNEFKHEVGIRILIKKVIELAAQYDIAMIPIFAY 215
>pdb|2Z99|A Chain A, Crystal Structure Of Scpb From Mycobacterium Tuberculosis
Length = 219
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 11 SEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDK 60
SE PD+ L DVD +D++ + D S P F+ + EQ + D+
Sbjct: 171 SELPDIAPLLPDVDTIDDLSESLD--SEPRFIKLTGELASEQTLSFDVDR 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,545,853
Number of Sequences: 62578
Number of extensions: 43021
Number of successful extensions: 259
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 122
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)