Query psy11066
Match_columns 70
No_of_seqs 105 out of 1007
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 17:10:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03065 PDI_b_Calsequestrin_N 99.8 9.9E-20 2.2E-24 95.2 8.9 68 1-69 48-119 (120)
2 KOG0910|consensus 99.8 1.2E-19 2.5E-24 97.1 7.4 69 1-69 78-148 (150)
3 PRK11509 hydrogenase-1 operon 99.8 1.9E-18 4.1E-23 91.3 9.3 67 3-69 55-124 (132)
4 KOG0907|consensus 99.8 1.5E-18 3.2E-23 89.1 8.6 68 1-68 38-105 (106)
5 cd02965 HyaE HyaE family; HyaE 99.8 2.9E-18 6.3E-23 88.4 8.6 62 2-63 47-110 (111)
6 PF00085 Thioredoxin: Thioredo 99.8 4E-17 8.7E-22 82.3 10.1 67 2-68 35-103 (103)
7 cd02954 DIM1 Dim1 family; Dim1 99.7 7.2E-18 1.6E-22 87.4 6.5 56 1-56 31-87 (114)
8 KOG0908|consensus 99.7 1.7E-17 3.8E-22 94.8 6.8 70 1-70 38-107 (288)
9 cd02956 ybbN ybbN protein fami 99.7 2.1E-16 4.6E-21 79.3 8.2 66 1-66 29-96 (96)
10 cd02985 TRX_CDSP32 TRX family, 99.7 3.4E-16 7.4E-21 79.8 9.0 67 2-68 33-102 (103)
11 COG3118 Thioredoxin domain-con 99.7 6.3E-17 1.4E-21 94.3 6.9 69 2-70 61-131 (304)
12 PHA02278 thioredoxin-like prot 99.7 2.6E-16 5.7E-21 80.4 8.5 64 1-64 31-100 (103)
13 cd03006 PDI_a_EFP1_N PDIa fami 99.7 1.4E-16 3.1E-21 82.6 7.1 65 1-65 46-113 (113)
14 PRK10996 thioredoxin 2; Provis 99.7 5.1E-16 1.1E-20 82.9 9.0 68 2-69 70-139 (139)
15 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 1.8E-16 4E-21 80.3 6.7 64 1-64 35-100 (101)
16 cd02963 TRX_DnaJ TRX domain, D 99.7 4.8E-16 1E-20 80.2 7.7 66 2-67 42-110 (111)
17 PRK09381 trxA thioredoxin; Pro 99.7 1.5E-15 3.2E-20 77.8 9.1 68 2-69 39-108 (109)
18 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 3.9E-16 8.4E-21 79.3 6.6 65 1-65 36-104 (104)
19 PLN00410 U5 snRNP protein, DIM 99.7 1.4E-15 3E-20 81.4 8.7 69 1-69 40-120 (142)
20 cd02999 PDI_a_ERp44_like PDIa 99.6 1.1E-15 2.3E-20 77.7 6.6 64 1-65 35-100 (100)
21 cd02989 Phd_like_TxnDC9 Phosdu 99.6 1.9E-15 4.1E-20 78.3 7.5 56 1-56 39-94 (113)
22 cd02948 TRX_NDPK TRX domain, T 99.6 5.2E-15 1.1E-19 75.3 8.8 65 2-67 35-101 (102)
23 TIGR01068 thioredoxin thioredo 99.6 7.9E-15 1.7E-19 73.5 8.5 68 2-69 32-101 (101)
24 cd02949 TRX_NTR TRX domain, no 99.6 8E-15 1.7E-19 73.9 8.3 65 2-66 31-97 (97)
25 cd02994 PDI_a_TMX PDIa family, 99.6 6.7E-15 1.4E-19 74.4 7.9 66 1-67 33-101 (101)
26 cd02984 TRX_PICOT TRX domain, 99.6 9.3E-15 2E-19 73.3 8.0 65 1-65 31-96 (97)
27 cd03005 PDI_a_ERp46 PDIa famil 99.6 4.6E-15 9.9E-20 74.9 6.9 64 2-65 34-102 (102)
28 cd02957 Phd_like Phosducin (Ph 99.6 5.8E-15 1.3E-19 76.3 6.8 55 1-56 41-95 (113)
29 cd02996 PDI_a_ERp44 PDIa famil 99.6 9.4E-15 2E-19 74.8 7.0 65 1-65 35-108 (108)
30 cd02987 Phd_like_Phd Phosducin 99.6 2.3E-14 5E-19 79.1 8.5 65 2-67 101-173 (175)
31 cd02975 PfPDO_like_N Pyrococcu 99.6 2.7E-14 5.9E-19 73.9 8.3 68 2-69 40-110 (113)
32 PTZ00051 thioredoxin; Provisio 99.6 2.7E-14 5.8E-19 71.7 7.8 61 2-62 36-96 (98)
33 PTZ00443 Thioredoxin domain-co 99.6 2.8E-14 6.1E-19 81.3 8.4 67 2-68 70-138 (224)
34 TIGR01126 pdi_dom protein disu 99.6 2.9E-14 6.3E-19 71.7 7.5 68 2-69 31-102 (102)
35 TIGR02187 GlrX_arch Glutaredox 99.6 4.6E-14 9.9E-19 79.9 8.2 69 1-69 39-111 (215)
36 PTZ00062 glutaredoxin; Provisi 99.6 4.2E-14 9E-19 79.7 7.8 61 1-69 34-94 (204)
37 cd02986 DLP Dim1 family, Dim1- 99.6 6.3E-14 1.4E-18 72.5 7.7 67 1-67 31-109 (114)
38 cd03001 PDI_a_P5 PDIa family, 99.5 1.2E-13 2.6E-18 69.7 7.4 64 2-65 36-102 (103)
39 cd03002 PDI_a_MPD1_like PDI fa 99.5 1E-13 2.2E-18 70.7 6.7 66 1-66 35-109 (109)
40 cd02950 TxlA TRX-like protein 99.5 2.7E-13 5.7E-18 72.7 8.5 69 1-69 37-110 (142)
41 cd02997 PDI_a_PDIR PDIa family 99.5 1.5E-13 3.3E-18 69.4 7.1 64 2-65 35-104 (104)
42 cd02962 TMX2 TMX2 family; comp 99.5 1.5E-13 3.3E-18 74.4 7.2 56 1-56 64-127 (152)
43 cd02947 TRX_family TRX family; 99.5 5E-13 1.1E-17 65.4 8.4 65 2-66 28-93 (93)
44 cd02982 PDI_b'_family Protein 99.5 1.8E-13 3.9E-18 69.2 6.3 67 2-68 30-102 (103)
45 cd03000 PDI_a_TMX3 PDIa family 99.5 4.5E-13 9.8E-18 68.2 7.4 66 2-68 33-103 (104)
46 cd02988 Phd_like_VIAF Phosduci 99.5 5.6E-13 1.2E-17 74.6 8.2 63 2-67 120-190 (192)
47 cd02961 PDI_a_family Protein D 99.4 6.9E-13 1.5E-17 66.0 6.1 64 2-65 33-101 (101)
48 TIGR00411 redox_disulf_1 small 99.4 2.9E-12 6.2E-17 62.4 8.2 64 2-69 17-82 (82)
49 cd02953 DsbDgamma DsbD gamma f 99.4 6.1E-13 1.3E-17 67.6 5.7 65 2-66 29-104 (104)
50 cd03007 PDI_a_ERp29_N PDIa fam 99.4 1.6E-12 3.4E-17 67.7 6.5 65 4-68 36-115 (116)
51 cd02998 PDI_a_ERp38 PDIa famil 99.4 2.3E-12 5E-17 65.0 6.2 64 2-65 36-105 (105)
52 TIGR01295 PedC_BrcD bacterioci 99.4 9.8E-12 2.1E-16 65.2 8.2 65 1-66 40-121 (122)
53 cd02995 PDI_a_PDI_a'_C PDIa fa 99.4 3.2E-12 7E-17 64.4 5.9 64 1-65 35-104 (104)
54 PTZ00102 disulphide isomerase; 99.3 1.3E-11 2.7E-16 76.0 8.5 68 1-69 66-138 (477)
55 KOG0912|consensus 99.3 3.3E-12 7.1E-17 75.3 5.2 70 1-70 30-107 (375)
56 KOG0190|consensus 99.3 6.1E-12 1.3E-16 78.0 6.5 69 1-69 59-132 (493)
57 TIGR01130 ER_PDI_fam protein d 99.3 1.6E-11 3.5E-16 75.0 8.0 68 2-69 36-109 (462)
58 TIGR02187 GlrX_arch Glutaredox 99.3 5.1E-11 1.1E-15 67.5 8.1 63 2-67 151-214 (215)
59 cd02993 PDI_a_APS_reductase PD 99.2 5.3E-11 1.2E-15 61.1 6.4 65 1-65 38-109 (109)
60 PTZ00102 disulphide isomerase; 99.2 7.2E-11 1.6E-15 72.7 7.3 69 1-69 392-465 (477)
61 cd02951 SoxW SoxW family; SoxW 99.2 1E-10 2.2E-15 61.2 6.8 62 8-69 41-119 (125)
62 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 6.2E-10 1.3E-14 55.6 7.3 57 2-62 30-87 (89)
63 KOG4277|consensus 99.1 1.9E-10 4.1E-15 68.3 5.4 69 1-69 60-132 (468)
64 PLN02309 5'-adenylylsulfate re 99.1 5.8E-10 1.3E-14 69.1 7.6 68 1-68 382-456 (457)
65 cd02952 TRP14_like Human TRX-r 99.1 6E-10 1.3E-14 58.3 6.5 64 1-64 45-117 (119)
66 TIGR00424 APS_reduc 5'-adenyly 99.1 9.9E-10 2.2E-14 68.2 7.5 68 1-68 388-462 (463)
67 TIGR00412 redox_disulf_2 small 99.1 2.3E-09 5E-14 52.0 6.9 57 2-65 16-75 (76)
68 PHA02125 thioredoxin-like prot 99.0 3.4E-09 7.4E-14 51.2 7.1 56 2-65 16-73 (75)
69 PF02114 Phosducin: Phosducin; 99.0 2.3E-09 5E-14 62.6 7.2 66 2-68 164-237 (265)
70 cd02992 PDI_a_QSOX PDIa family 99.0 1.1E-09 2.3E-14 56.8 3.9 53 2-55 37-95 (114)
71 cd02973 TRX_GRX_like Thioredox 99.0 7.2E-09 1.6E-13 48.7 6.2 46 2-49 17-62 (67)
72 TIGR01130 ER_PDI_fam protein d 98.9 4.3E-09 9.3E-14 64.4 6.3 67 2-70 382-455 (462)
73 KOG1672|consensus 98.9 2.1E-09 4.6E-14 60.0 4.3 55 2-56 102-156 (211)
74 PRK00293 dipZ thiol:disulfide 98.9 1.5E-08 3.3E-13 64.4 7.7 63 7-69 500-570 (571)
75 KOG0191|consensus 98.9 1.6E-08 3.4E-13 61.5 6.9 67 2-68 65-133 (383)
76 TIGR02740 TraF-like TraF-like 98.9 5.4E-08 1.2E-12 57.1 8.9 67 2-69 184-264 (271)
77 PF13098 Thioredoxin_2: Thiore 98.8 3.2E-08 6.8E-13 50.6 5.8 51 15-65 40-112 (112)
78 PRK14018 trifunctional thiored 98.8 1.1E-07 2.4E-12 60.0 8.7 66 2-67 74-171 (521)
79 KOG0914|consensus 98.7 6.5E-09 1.4E-13 59.2 2.3 54 2-55 162-223 (265)
80 PF07449 HyaE: Hydrogenase-1 e 98.7 1.6E-07 3.5E-12 48.3 6.3 56 5-60 49-106 (107)
81 PRK03147 thiol-disulfide oxido 98.6 7.5E-07 1.6E-11 48.5 8.4 66 3-68 80-171 (173)
82 TIGR02738 TrbB type-F conjugat 98.6 6.5E-07 1.4E-11 48.7 7.9 67 2-69 68-153 (153)
83 KOG0190|consensus 98.6 6.9E-08 1.5E-12 60.4 4.5 67 1-69 401-473 (493)
84 cd02983 P5_C P5 family, C-term 98.6 8.8E-07 1.9E-11 47.0 7.6 67 3-69 43-115 (130)
85 PRK15412 thiol:disulfide inter 98.6 1.3E-06 2.8E-11 48.6 8.4 41 29-69 134-176 (185)
86 cd02958 UAS UAS family; UAS is 98.6 6.4E-07 1.4E-11 46.2 6.7 54 16-69 53-111 (114)
87 cd03010 TlpA_like_DsbE TlpA-li 98.5 7.5E-07 1.6E-11 46.4 6.6 59 2-61 43-126 (127)
88 PLN02919 haloacid dehalogenase 98.5 1.2E-06 2.7E-11 59.1 8.5 68 2-69 438-536 (1057)
89 TIGR00385 dsbE periplasmic pro 98.5 5.1E-07 1.1E-11 49.7 5.3 46 24-69 124-171 (173)
90 PF13192 Thioredoxin_3: Thiore 98.5 3.6E-06 7.7E-11 40.7 7.6 58 3-66 17-76 (76)
91 cd02959 ERp19 Endoplasmic reti 98.4 2.1E-07 4.6E-12 48.4 2.5 65 2-66 37-110 (117)
92 PF13848 Thioredoxin_6: Thiore 98.4 1.1E-05 2.3E-10 44.2 9.3 64 3-66 114-183 (184)
93 cd02966 TlpA_like_family TlpA- 98.4 3.1E-06 6.8E-11 42.4 6.5 53 3-55 38-116 (116)
94 COG2143 Thioredoxin-related pr 98.3 2.2E-06 4.7E-11 46.9 5.1 40 27-66 105-146 (182)
95 KOG0191|consensus 98.3 2.7E-06 5.8E-11 51.9 6.1 67 2-68 180-251 (383)
96 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 6.3E-06 1.4E-10 42.6 6.5 41 24-64 80-121 (123)
97 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 9.4E-06 2E-10 42.0 6.4 67 3-69 33-108 (111)
98 PRK13728 conjugal transfer pro 98.2 3E-05 6.4E-10 43.4 8.5 67 2-69 87-171 (181)
99 PF14595 Thioredoxin_9: Thiore 98.2 4.5E-06 9.7E-11 44.3 4.9 63 3-66 60-126 (129)
100 PF01216 Calsequestrin: Calseq 98.2 1.8E-05 3.9E-10 48.0 7.7 55 14-69 89-144 (383)
101 cd02955 SSP411 TRX domain, SSP 98.2 1.1E-05 2.4E-10 42.5 6.0 43 14-56 49-100 (124)
102 TIGR02196 GlrX_YruB Glutaredox 98.2 2.2E-05 4.7E-10 36.8 6.2 47 15-66 24-74 (74)
103 KOG1731|consensus 98.1 1.2E-05 2.6E-10 51.3 5.4 67 1-67 74-151 (606)
104 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 5.8E-05 1.3E-09 39.1 6.5 67 2-68 36-110 (111)
105 COG4232 Thiol:disulfide interc 98.0 3.8E-05 8.3E-10 49.1 6.7 60 10-69 503-568 (569)
106 PF13728 TraF: F plasmid trans 98.0 9E-05 2E-09 42.4 7.7 63 2-65 138-214 (215)
107 cd03009 TryX_like_TryX_NRX Try 98.0 3.2E-05 6.9E-10 40.5 5.5 51 2-52 36-115 (131)
108 PF13848 Thioredoxin_6: Thiore 98.0 0.00012 2.6E-09 40.0 7.8 62 3-68 9-74 (184)
109 TIGR03143 AhpF_homolog putativ 97.9 9E-05 1.9E-09 47.3 7.6 57 5-65 497-554 (555)
110 PF08534 Redoxin: Redoxin; In 97.9 8.5E-05 1.8E-09 39.5 6.2 62 3-64 48-145 (146)
111 smart00594 UAS UAS domain. 97.9 4.2E-05 9.2E-10 40.0 4.8 51 15-65 62-121 (122)
112 PRK15317 alkyl hydroperoxide r 97.9 0.00014 3.1E-09 46.0 7.8 60 4-67 136-196 (517)
113 cd02964 TryX_like_family Trypa 97.9 8.7E-05 1.9E-09 39.0 5.8 52 2-53 35-116 (132)
114 PRK10877 protein disulfide iso 97.9 2.3E-05 5.1E-10 45.2 3.8 44 21-68 186-230 (232)
115 cd03012 TlpA_like_DipZ_like Tl 97.9 0.00021 4.6E-09 37.2 7.0 54 3-56 42-125 (126)
116 PF13905 Thioredoxin_8: Thiore 97.9 0.00012 2.5E-09 36.2 5.7 46 3-48 20-94 (95)
117 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00041 8.9E-09 36.6 7.6 64 5-68 40-118 (126)
118 TIGR02739 TraF type-F conjugat 97.8 0.00036 7.9E-09 41.0 8.1 68 1-69 167-248 (256)
119 KOG0913|consensus 97.8 2.1E-05 4.6E-10 45.4 2.9 64 2-66 57-123 (248)
120 KOG3414|consensus 97.8 0.00031 6.7E-09 37.3 6.9 65 2-66 41-117 (142)
121 KOG0911|consensus 97.8 3.1E-05 6.8E-10 44.4 3.1 60 2-61 35-94 (227)
122 cd01659 TRX_superfamily Thiore 97.7 0.0003 6.4E-09 31.1 5.7 45 3-47 16-63 (69)
123 TIGR01626 ytfJ_HI0045 conserve 97.7 0.00042 9.1E-09 38.9 7.2 41 25-65 133-176 (184)
124 TIGR03140 AhpF alkyl hydropero 97.7 0.00057 1.2E-08 43.3 7.7 59 5-67 138-197 (515)
125 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 4E-05 8.6E-10 42.9 2.2 44 18-65 153-197 (197)
126 COG0526 TrxA Thiol-disulfide i 97.6 0.00046 1E-08 34.0 5.5 64 2-65 50-120 (127)
127 cd02991 UAS_ETEA UAS family, E 97.6 0.00052 1.1E-08 35.8 5.8 54 15-68 52-112 (116)
128 cd02969 PRX_like1 Peroxiredoxi 97.5 0.0018 3.8E-08 35.4 7.9 67 3-69 44-152 (171)
129 PLN02399 phospholipid hydroper 97.5 0.0017 3.8E-08 37.7 8.0 33 37-69 200-234 (236)
130 cd02981 PDI_b_family Protein D 97.4 0.0017 3.6E-08 32.2 6.1 60 4-67 34-96 (97)
131 PRK13703 conjugal pilus assemb 97.4 0.0021 4.6E-08 37.7 7.1 69 1-69 160-241 (248)
132 TIGR03143 AhpF_homolog putativ 97.4 0.0019 4.1E-08 41.5 7.4 66 4-69 386-454 (555)
133 KOG3171|consensus 97.3 0.00036 7.8E-09 40.2 3.4 65 3-68 178-250 (273)
134 cd03017 PRX_BCP Peroxiredoxin 97.3 0.0022 4.8E-08 33.6 6.2 41 25-65 88-139 (140)
135 KOG3170|consensus 97.3 0.00089 1.9E-08 38.2 4.8 63 2-67 129-199 (240)
136 TIGR02742 TrbC_Ftype type-F co 97.3 0.0011 2.3E-08 35.4 4.7 41 26-66 60-112 (130)
137 PF13462 Thioredoxin_4: Thiore 97.2 0.0012 2.6E-08 35.4 4.8 36 27-67 126-162 (162)
138 TIGR02661 MauD methylamine deh 97.2 0.0063 1.4E-07 34.0 7.6 43 26-68 135-178 (189)
139 PTZ00056 glutathione peroxidas 97.2 0.0041 8.9E-08 35.2 6.8 30 40-69 147-178 (199)
140 PF11009 DUF2847: Protein of u 97.2 0.0039 8.4E-08 32.1 6.1 57 5-61 40-104 (105)
141 PRK11657 dsbG disulfide isomer 97.2 0.00069 1.5E-08 39.6 3.6 41 26-66 208-249 (251)
142 PF01323 DSBA: DSBA-like thior 97.2 0.0013 2.9E-08 36.2 4.6 37 26-66 156-193 (193)
143 TIGR02200 GlrX_actino Glutared 97.1 0.0011 2.3E-08 31.4 3.3 47 15-65 24-75 (77)
144 cd02967 mauD Methylamine utili 97.1 0.0061 1.3E-07 30.9 6.1 50 2-51 39-110 (114)
145 COG2761 FrnE Predicted dithiol 97.0 0.0025 5.4E-08 36.9 4.8 38 28-69 175-213 (225)
146 KOG2603|consensus 96.9 0.0032 7E-08 38.0 4.9 53 16-68 105-165 (331)
147 cd03008 TryX_like_RdCVF Trypar 96.9 0.0054 1.2E-07 33.3 5.4 25 28-52 103-128 (146)
148 PLN02412 probable glutathione 96.9 0.0037 8E-08 34.3 4.6 35 35-69 128-164 (167)
149 PRK09437 bcp thioredoxin-depen 96.8 0.017 3.7E-07 31.0 7.0 42 25-66 95-150 (154)
150 PF05768 DUF836: Glutaredoxin- 96.8 0.011 2.4E-07 28.7 5.6 50 16-66 29-81 (81)
151 PRK11200 grxA glutaredoxin 1; 96.8 0.018 4E-07 28.0 6.2 60 3-69 18-83 (85)
152 KOG2501|consensus 96.8 0.0094 2E-07 32.8 5.5 25 27-51 105-130 (157)
153 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.011 2.4E-07 27.2 5.2 46 15-65 24-73 (73)
154 cd03023 DsbA_Com1_like DsbA fa 96.7 0.0045 9.7E-08 32.7 4.2 35 27-66 119-154 (154)
155 cd00340 GSH_Peroxidase Glutath 96.6 0.016 3.4E-07 31.2 5.9 25 40-64 125-151 (152)
156 cd02960 AGR Anterior Gradient 96.6 0.006 1.3E-07 32.6 3.8 21 36-56 78-99 (130)
157 PF09673 TrbC_Ftype: Type-F co 96.5 0.0089 1.9E-07 31.1 4.3 22 25-46 59-80 (113)
158 PF02966 DIM1: Mitosis protein 96.5 0.037 8E-07 29.7 6.5 48 2-50 38-87 (133)
159 cd03014 PRX_Atyp2cys Peroxired 96.4 0.055 1.2E-06 28.5 7.2 63 3-65 46-141 (143)
160 cd03024 DsbA_FrnE DsbA family, 96.3 0.0079 1.7E-07 33.5 3.7 36 26-65 164-200 (201)
161 PF06110 DUF953: Eukaryotic pr 96.2 0.013 2.7E-07 30.9 3.9 46 3-48 45-100 (119)
162 TIGR02194 GlrX_NrdH Glutaredox 96.2 0.035 7.7E-07 26.1 5.1 45 15-63 23-70 (72)
163 cd03066 PDI_b_Calsequestrin_mi 96.2 0.049 1.1E-06 27.5 5.8 60 5-68 37-100 (102)
164 PF03190 Thioredox_DsbH: Prote 96.1 0.023 4.9E-07 31.5 4.5 38 16-53 73-119 (163)
165 cd03019 DsbA_DsbA DsbA family, 96.0 0.015 3.1E-07 31.7 3.6 28 27-56 133-160 (178)
166 cd03022 DsbA_HCCA_Iso DsbA fam 96.0 0.015 3.3E-07 32.0 3.7 34 27-65 157-191 (192)
167 PF13743 Thioredoxin_5: Thiore 96.0 0.0068 1.5E-07 33.7 2.2 36 26-61 136-174 (176)
168 cd02978 KaiB_like KaiB-like fa 95.8 0.015 3.3E-07 28.0 2.7 35 8-42 24-60 (72)
169 PRK13730 conjugal transfer pil 95.7 0.038 8.2E-07 31.7 4.5 40 26-66 151-191 (212)
170 COG3531 Predicted protein-disu 95.7 0.036 7.8E-07 31.7 4.3 43 27-69 164-209 (212)
171 cd03015 PRX_Typ2cys Peroxiredo 95.7 0.078 1.7E-06 29.1 5.6 45 24-68 100-156 (173)
172 PRK00522 tpx lipid hydroperoxi 95.5 0.18 3.8E-06 27.7 7.6 29 27-55 111-149 (167)
173 PTZ00256 glutathione peroxidas 95.4 0.055 1.2E-06 30.1 4.5 36 34-69 141-181 (183)
174 PRK13190 putative peroxiredoxi 95.4 0.1 2.2E-06 29.6 5.6 45 24-68 97-153 (202)
175 cd03067 PDI_b_PDIR_N PDIb fami 95.4 0.11 2.3E-06 26.9 5.0 62 5-66 39-109 (112)
176 KOG2507|consensus 95.4 0.1 2.3E-06 33.1 5.9 53 16-68 54-110 (506)
177 PRK10954 periplasmic protein d 95.3 0.079 1.7E-06 30.0 5.0 23 27-51 157-179 (207)
178 COG1651 DsbG Protein-disulfide 95.2 0.046 9.9E-07 31.5 3.9 40 25-69 203-243 (244)
179 PF00578 AhpC-TSA: AhpC/TSA fa 95.1 0.094 2E-06 26.7 4.6 48 4-51 46-123 (124)
180 cd02970 PRX_like2 Peroxiredoxi 95.0 0.23 5.1E-06 26.0 6.0 19 37-55 129-148 (149)
181 TIGR02180 GRX_euk Glutaredoxin 95.0 0.16 3.5E-06 24.1 5.0 32 16-49 28-64 (84)
182 PRK10329 glutaredoxin-like pro 94.9 0.19 4.1E-06 24.4 6.6 49 15-68 25-76 (81)
183 cd03069 PDI_b_ERp57 PDIb famil 94.9 0.22 4.9E-06 25.2 5.5 60 4-68 35-103 (104)
184 cd03018 PRX_AhpE_like Peroxire 94.8 0.29 6.2E-06 25.8 6.9 30 27-56 97-133 (149)
185 TIGR02540 gpx7 putative glutat 94.7 0.11 2.3E-06 27.9 4.3 32 37-68 115-152 (153)
186 PF00462 Glutaredoxin: Glutare 94.4 0.2 4.3E-06 22.6 4.7 33 15-49 23-59 (60)
187 TIGR02654 circ_KaiB circadian 94.3 0.071 1.5E-06 26.6 2.7 40 16-56 36-75 (87)
188 PRK09301 circadian clock prote 93.9 0.18 4E-06 25.9 3.8 46 16-62 39-86 (103)
189 KOG3425|consensus 93.7 0.28 6E-06 26.1 4.3 45 2-46 51-104 (128)
190 PRK15000 peroxidase; Provision 93.5 0.46 9.9E-06 27.0 5.4 44 24-67 105-160 (200)
191 cd03025 DsbA_FrnE_like DsbA fa 93.3 0.18 4E-06 27.7 3.5 22 27-48 159-180 (193)
192 PF07689 KaiB: KaiB domain; I 93.0 0.014 2.9E-07 28.8 -1.1 38 5-42 17-56 (82)
193 PRK13189 peroxiredoxin; Provis 92.5 0.87 1.9E-05 26.3 5.7 43 26-68 107-162 (222)
194 cd03021 DsbA_GSTK DsbA family, 92.3 0.34 7.4E-06 27.4 3.8 38 28-65 170-208 (209)
195 cd02971 PRX_family Peroxiredox 92.1 0.95 2.1E-05 23.5 6.2 33 24-56 87-129 (140)
196 TIGR03137 AhpC peroxiredoxin. 91.4 1.5 3.2E-05 24.5 5.6 41 26-66 101-153 (187)
197 cd02972 DsbA_family DsbA famil 91.3 0.24 5.1E-06 23.7 2.2 19 27-45 73-91 (98)
198 PF13899 Thioredoxin_7: Thiore 91.1 0.6 1.3E-05 22.4 3.5 31 14-45 51-81 (82)
199 PRK13599 putative peroxiredoxi 91.0 1.8 3.8E-05 24.9 5.8 42 26-67 100-154 (215)
200 PF06491 Disulph_isomer: Disul 90.9 0.59 1.3E-05 25.2 3.5 30 36-65 94-128 (136)
201 PF08806 Sep15_SelM: Sep15/Sel 90.6 0.61 1.3E-05 22.7 3.2 33 36-68 40-75 (78)
202 TIGR02183 GRXA Glutaredoxin, G 89.9 1.4 3E-05 21.5 6.3 56 6-68 20-81 (86)
203 PTZ00137 2-Cys peroxiredoxin; 89.8 2.6 5.6E-05 25.2 5.9 42 26-67 171-223 (261)
204 PRK10382 alkyl hydroperoxide r 89.3 2.6 5.7E-05 23.7 7.4 44 24-67 99-154 (187)
205 PTZ00253 tryparedoxin peroxida 89.0 1.3 2.9E-05 24.9 4.2 41 26-66 109-161 (199)
206 COG3411 Ferredoxin [Energy pro 88.7 1.4 3E-05 20.8 3.4 29 37-69 16-45 (64)
207 KOG1364|consensus 88.4 0.79 1.7E-05 28.4 3.2 53 16-68 133-188 (356)
208 cd02968 SCO SCO (an acronym fo 87.8 1.2 2.6E-05 23.2 3.4 17 39-55 125-142 (142)
209 PRK13191 putative peroxiredoxi 87.7 3.7 8.1E-05 23.6 5.6 42 26-67 105-159 (215)
210 TIGR02190 GlrX-dom Glutaredoxi 87.2 2.2 4.7E-05 20.3 4.2 33 15-49 32-67 (79)
211 cd02974 AhpF_NTD_N Alkyl hydro 86.5 2.8 6.2E-05 21.0 6.6 32 37-68 60-93 (94)
212 COG0386 BtuE Glutathione perox 85.3 2 4.4E-05 23.8 3.4 29 41-69 131-160 (162)
213 TIGR02181 GRX_bact Glutaredoxi 84.1 2.4 5.2E-05 19.9 3.1 33 15-49 23-59 (79)
214 cd03016 PRX_1cys Peroxiredoxin 83.4 6.3 0.00014 22.3 5.6 42 27-68 98-153 (203)
215 PF09695 YtfJ_HI0045: Bacteria 82.1 3.7 7.9E-05 22.9 3.6 38 29-66 115-155 (160)
216 cd03418 GRX_GRXb_1_3_like Glut 81.7 3.9 8.5E-05 18.8 3.6 33 15-49 24-61 (75)
217 TIGR02189 GlrX-like_plant Glut 80.8 5.6 0.00012 20.0 3.9 48 15-67 32-93 (99)
218 cd02990 UAS_FAF1 UAS family, F 77.7 9.1 0.0002 20.7 5.7 40 29-68 88-132 (136)
219 cd05855 Ig_TrkB_d5 Fifth domai 76.5 2.3 5E-05 20.6 1.6 14 38-51 12-25 (79)
220 cd02066 GRX_family Glutaredoxi 76.0 5.8 0.00013 17.6 4.4 34 16-51 25-62 (72)
221 cd05863 Ig2_VEGFR-3 Second imm 74.6 3.5 7.6E-05 19.2 1.9 14 38-51 12-25 (67)
222 TIGR02743 TraW type-F conjugat 73.7 5.1 0.00011 23.1 2.7 25 24-49 172-196 (202)
223 PF11317 DUF3119: Protein of u 71.6 13 0.00028 19.6 3.9 35 35-69 80-115 (116)
224 COG0695 GrxC Glutaredoxin and 70.6 11 0.00023 18.2 3.2 32 15-48 25-62 (80)
225 PRK10606 btuE putative glutath 69.9 9.1 0.0002 21.6 3.2 30 40-69 149-181 (183)
226 PF09822 ABC_transp_aux: ABC-t 69.6 20 0.00044 21.1 8.5 35 5-39 51-90 (271)
227 cd06538 CIDE_N_FSP27 CIDE_N do 69.5 12 0.00025 18.5 3.1 24 28-51 29-52 (79)
228 cd06537 CIDE_N_B CIDE_N domain 68.8 11 0.00024 18.6 2.9 24 28-51 29-52 (81)
229 PRK15317 alkyl hydroperoxide r 68.3 30 0.00065 22.5 6.6 32 37-68 60-93 (517)
230 PRK13738 conjugal transfer pil 68.3 4.5 9.7E-05 23.5 1.7 26 24-49 170-196 (209)
231 PF09061 Stirrup: Stirrup; In 67.6 2.4 5.2E-05 20.1 0.5 48 20-68 6-62 (79)
232 COG1999 Uncharacterized protei 67.2 22 0.00047 20.4 6.3 38 32-69 165-204 (207)
233 cd03029 GRX_hybridPRX5 Glutare 67.1 11 0.00025 17.2 4.3 34 15-50 25-61 (72)
234 TIGR03757 conj_TIGR03757 integ 67.0 5.7 0.00012 20.9 1.8 32 30-65 77-109 (113)
235 cd04971 Ig_TrKABC_d5 Fifth dom 66.9 5.4 0.00012 19.1 1.7 14 38-51 12-25 (81)
236 PRK10638 glutaredoxin 3; Provi 65.7 14 0.0003 17.6 4.2 34 15-50 26-63 (83)
237 PF06953 ArsD: Arsenical resis 65.2 19 0.00042 19.1 6.8 49 15-66 40-99 (123)
238 cd03027 GRX_DEP Glutaredoxin ( 64.8 13 0.00029 17.1 3.7 34 15-50 25-62 (73)
239 COG2101 SPT15 TATA-box binding 63.5 25 0.00054 20.1 4.0 27 40-68 55-82 (185)
240 cd06539 CIDE_N_A CIDE_N domain 63.4 17 0.00037 17.9 3.0 24 28-51 29-53 (78)
241 PF07511 DUF1525: Protein of u 62.6 21 0.00046 18.8 3.8 34 30-67 76-110 (114)
242 cd03062 TRX_Fd_Sucrase TRX-lik 62.4 19 0.00041 18.1 3.9 30 36-69 51-83 (97)
243 PRK13817 ribosome-binding fact 62.3 22 0.00047 18.7 4.0 20 28-47 75-94 (119)
244 PF02484 Rhabdo_NV: Rhabdoviru 62.1 14 0.00031 18.7 2.6 37 31-67 17-54 (111)
245 PF08599 Nbs1_C: DNA damage re 61.9 8 0.00017 18.2 1.6 32 34-68 14-45 (65)
246 PF00837 T4_deiodinase: Iodoth 61.8 32 0.00069 20.5 6.3 47 19-68 185-236 (237)
247 TIGR03140 AhpF alkyl hydropero 61.2 43 0.00093 21.8 6.7 33 36-68 60-94 (515)
248 PF13778 DUF4174: Domain of un 61.0 22 0.00048 18.5 6.3 41 28-68 68-111 (118)
249 cd05892 Ig_Myotilin_C C-termin 60.6 9.7 0.00021 18.0 1.9 15 37-51 11-25 (75)
250 cd04976 Ig2_VEGFR Second immun 58.9 11 0.00023 17.4 1.9 14 38-51 12-25 (71)
251 COG3634 AhpF Alkyl hydroperoxi 58.6 39 0.00084 21.9 4.6 32 31-66 163-195 (520)
252 cd03419 GRX_GRXh_1_2_like Glut 58.4 19 0.0004 16.7 6.3 32 16-49 27-63 (82)
253 COG0858 RbfA Ribosome-binding 58.4 26 0.00057 18.4 4.0 19 29-47 80-98 (118)
254 PRK05463 hypothetical protein; 58.1 24 0.00053 21.3 3.5 51 3-53 44-99 (262)
255 cd05864 Ig2_VEGFR-2 Second imm 58.1 12 0.00025 17.5 1.9 14 38-51 12-25 (70)
256 PRK00366 ispG 4-hydroxy-3-meth 57.9 46 0.001 21.1 5.9 53 16-68 299-356 (360)
257 PRK13815 ribosome-binding fact 57.6 27 0.00059 18.4 3.9 19 29-47 77-95 (122)
258 PRK13818 ribosome-binding fact 57.3 28 0.0006 18.4 3.9 19 29-47 78-96 (121)
259 cd05859 Ig4_PDGFR-alpha Fourth 56.6 9.6 0.00021 19.1 1.6 15 37-51 31-45 (101)
260 COG1225 Bcp Peroxiredoxin [Pos 56.3 34 0.00073 19.0 4.9 46 24-69 94-156 (157)
261 PHA02131 hypothetical protein 55.9 21 0.00045 16.5 3.5 28 36-63 27-54 (70)
262 cd05868 Ig4_NrCAM Fourth immun 55.6 13 0.00029 17.3 1.9 14 38-51 15-28 (76)
263 cd05885 Ig2_Necl-4 Second immu 55.5 13 0.00028 18.1 1.9 18 35-52 11-28 (80)
264 PF04900 Fcf1: Fcf1; InterPro 54.9 16 0.00035 18.3 2.2 26 22-47 69-95 (101)
265 COG0821 gcpE 1-hydroxy-2-methy 54.4 31 0.00067 21.8 3.6 54 16-69 292-351 (361)
266 PRK00521 rbfA ribosome-binding 53.1 33 0.00071 17.9 3.9 19 29-47 80-98 (120)
267 TIGR03765 ICE_PFL_4695 integra 53.0 16 0.00034 19.0 2.0 16 27-42 83-98 (105)
268 PRK00394 transcription factor; 53.0 41 0.00088 19.0 4.1 27 40-68 141-168 (179)
269 cd05744 Ig_Myotilin_C_like Imm 52.8 15 0.00033 17.1 1.8 14 38-51 12-25 (75)
270 TIGR00082 rbfA ribosome-bindin 52.7 33 0.00071 17.8 3.9 33 28-67 77-110 (114)
271 cd07702 Ig2_VEGFR-1 Second imm 51.7 16 0.00035 17.2 1.8 13 38-50 12-24 (72)
272 cd05760 Ig2_PTK7 Second immuno 50.9 15 0.00032 17.1 1.6 13 38-50 12-24 (77)
273 cd04518 TBP_archaea archaeal T 50.8 44 0.00096 18.8 4.0 27 40-68 140-167 (174)
274 COG1331 Highly conserved prote 50.6 43 0.00093 23.1 4.0 36 16-51 79-123 (667)
275 PF11525 CopK: Copper resistan 50.3 12 0.00026 18.0 1.2 14 36-49 13-26 (73)
276 cd05867 Ig4_L1-CAM_like Fourth 50.2 18 0.00039 16.7 1.9 14 38-51 15-28 (76)
277 cd05875 Ig6_hNeurofascin_like 50.0 19 0.00042 16.8 2.0 14 37-50 11-24 (77)
278 PF11072 DUF2859: Protein of u 49.7 18 0.00038 19.8 1.9 16 27-42 121-136 (142)
279 cd00652 TBP_TLF TATA box bindi 49.6 46 0.001 18.6 4.0 26 41-68 142-168 (174)
280 PF04551 GcpE: GcpE protein; 49.5 44 0.00095 21.2 3.8 54 15-68 298-358 (359)
281 cd05748 Ig_Titin_like Immunogl 49.3 20 0.00043 16.3 1.9 14 37-50 12-25 (74)
282 cd05750 Ig_Pro_neuregulin Immu 49.2 16 0.00034 16.6 1.6 15 37-51 12-26 (75)
283 cd05738 Ig2_RPTP_IIa_LAR_like 48.8 20 0.00044 16.5 1.9 14 38-51 12-25 (74)
284 cd04516 TBP_eukaryotes eukaryo 48.3 49 0.0011 18.6 4.0 27 40-68 49-76 (174)
285 PF10726 DUF2518: Protein of f 48.2 47 0.001 18.3 4.0 33 37-69 69-104 (145)
286 cd04975 Ig4_SCFR_like Fourth i 47.9 15 0.00031 18.5 1.4 14 38-51 33-46 (101)
287 PF11834 DUF3354: Domain of un 47.9 32 0.0007 16.4 3.1 24 29-54 35-58 (69)
288 PF05626 DUF790: Protein of un 47.5 69 0.0015 20.5 4.5 33 37-69 302-336 (379)
289 cd03074 PDI_b'_Calsequestrin_C 47.4 43 0.00094 17.7 6.8 68 2-69 38-120 (120)
290 KOG1651|consensus 47.4 21 0.00046 20.1 2.1 29 41-69 140-169 (171)
291 cd04517 TLF TBP-like factors ( 47.1 52 0.0011 18.5 4.1 27 40-68 49-76 (174)
292 smart00266 CAD Domains present 46.8 36 0.00077 16.5 3.1 24 28-51 27-51 (74)
293 cd05874 Ig6_NrCAM Sixth immuno 46.3 22 0.00048 16.6 1.9 15 36-50 10-24 (77)
294 cd05893 Ig_Palladin_C C-termin 46.0 23 0.0005 16.6 1.9 14 38-51 12-25 (75)
295 cd05857 Ig2_FGFR Second immuno 45.6 23 0.0005 16.5 1.9 15 37-51 22-36 (85)
296 PTZ00194 60S ribosomal protein 45.2 36 0.00079 18.7 2.7 32 21-56 28-59 (143)
297 PF00352 TBP: Transcription fa 45.1 38 0.00083 16.4 4.4 29 38-68 49-78 (86)
298 cd01615 CIDE_N CIDE_N domain, 45.0 40 0.00086 16.6 3.0 24 28-51 29-53 (78)
299 PHA03050 glutaredoxin; Provisi 44.9 44 0.00096 17.1 3.3 32 17-50 42-80 (108)
300 cd05848 Ig1_Contactin-5 First 44.8 24 0.00051 17.2 1.9 15 37-51 32-46 (94)
301 PLN00062 TATA-box-binding prot 44.8 58 0.0013 18.4 4.0 26 41-68 141-167 (179)
302 cd05757 Ig2_IL1R_like Second i 44.3 20 0.00044 17.6 1.6 15 37-51 28-42 (92)
303 cd06536 CIDE_N_ICAD CIDE_N dom 44.1 42 0.00091 16.6 3.0 24 28-51 29-55 (80)
304 PF00708 Acylphosphatase: Acyl 43.8 41 0.00089 16.4 3.2 37 27-66 24-60 (91)
305 cd04978 Ig4_L1-NrCAM_like Four 43.6 27 0.00058 15.8 1.9 15 37-51 14-28 (76)
306 KOG1731|consensus 43.2 34 0.00074 23.2 2.8 38 28-66 228-266 (606)
307 cd05723 Ig4_Neogenin Fourth im 43.2 27 0.00058 15.9 1.9 13 38-50 13-25 (71)
308 PF02938 GAD: GAD domain; Int 43.2 25 0.00055 17.4 1.8 43 24-67 29-72 (95)
309 PF02042 RWP-RK: RWP-RK domain 43.1 23 0.00051 15.9 1.5 20 21-40 27-46 (52)
310 cd05746 Ig4_Peroxidasin Fourth 42.6 29 0.00064 15.6 1.9 13 38-50 12-24 (69)
311 PF13438 DUF4113: Domain of un 42.1 35 0.00076 15.1 3.2 24 2-25 4-29 (52)
312 TIGR00762 DegV EDD domain prot 42.0 75 0.0016 18.9 4.0 42 24-66 10-51 (275)
313 PRK12759 bifunctional gluaredo 42.0 88 0.0019 20.0 4.4 33 15-49 26-70 (410)
314 PRK14429 acylphosphatase; Prov 42.0 46 0.00099 16.4 3.9 36 27-65 22-57 (90)
315 KOG2868|consensus 41.6 90 0.0019 19.7 4.3 39 3-45 24-62 (335)
316 cd05739 Ig3_RPTP_IIa_LAR_like 41.6 33 0.0007 15.7 2.0 15 36-50 13-27 (69)
317 PF13926 DUF4211: Domain of un 41.5 59 0.0013 17.6 3.8 46 2-48 92-138 (153)
318 PF10138 vWA-TerF-like: vWA fo 41.2 73 0.0016 18.5 4.3 13 35-47 101-114 (200)
319 PF02033 RBFA: Ribosome-bindin 41.2 49 0.0011 16.6 3.0 20 28-47 73-92 (104)
320 cd05762 Ig8_MLCK Eighth immuno 41.2 29 0.00063 17.1 1.9 15 37-51 28-42 (98)
321 cd02980 TRX_Fd_family Thioredo 41.1 40 0.00087 15.5 3.6 28 36-67 48-76 (77)
322 cd05733 Ig6_L1-CAM_like Sixth 40.9 29 0.00064 16.1 1.8 14 37-50 11-24 (77)
323 COG2047 Uncharacterized protei 40.1 35 0.00075 20.4 2.2 42 27-68 109-153 (258)
324 PF09116 gp45-slide_C: gp45 sl 39.9 39 0.00085 17.7 2.3 31 23-53 8-39 (112)
325 cd05737 Ig_Myomesin_like_C C-t 39.6 32 0.0007 16.5 1.9 15 37-51 29-43 (92)
326 cd03028 GRX_PICOT_like Glutare 39.6 49 0.0011 16.0 4.6 33 15-49 37-73 (90)
327 cd03068 PDI_b_ERp72 PDIb famil 39.6 54 0.0012 16.6 6.3 59 5-67 37-106 (107)
328 cd05853 Ig6_Contactin-4 Sixth 39.5 33 0.00071 16.7 1.9 14 38-51 16-29 (85)
329 PRK13816 ribosome-binding fact 39.2 63 0.0014 17.3 4.2 19 29-47 85-103 (131)
330 cd07693 Ig1_Robo First immunog 39.0 33 0.00072 16.2 1.9 16 37-52 29-44 (100)
331 cd05745 Ig3_Peroxidasin Third 38.8 35 0.00076 15.6 1.9 14 37-50 15-28 (74)
332 cd05894 Ig_C5_MyBP-C C5 immuno 38.5 35 0.00076 16.3 1.9 15 37-51 23-37 (86)
333 cd06353 PBP1_BmpA_Med_like Per 38.5 36 0.00078 19.9 2.2 22 2-23 68-89 (258)
334 COG4604 CeuD ABC-type enteroch 37.6 92 0.002 18.6 4.2 44 2-53 174-218 (252)
335 PF11341 DUF3143: Protein of u 37.4 50 0.0011 15.5 3.1 25 42-66 34-61 (63)
336 cd05895 Ig_Pro_neuregulin-1 Im 37.3 27 0.00059 16.0 1.4 14 38-51 13-26 (76)
337 PRK13669 hypothetical protein; 37.3 56 0.0012 16.1 4.9 53 6-69 20-72 (78)
338 cd01141 TroA_d Periplasmic bin 36.9 45 0.00098 18.2 2.4 40 4-44 60-99 (186)
339 PF02645 DegV: Uncharacterised 36.8 89 0.0019 18.6 3.7 39 25-66 12-52 (280)
340 PF02017 CIDE-N: CIDE-N domain 36.3 32 0.0007 16.8 1.5 24 28-51 29-53 (78)
341 COG4592 FepB ABC-type Fe2+-ent 35.9 64 0.0014 19.8 2.9 43 4-47 106-149 (319)
342 PRK14438 acylphosphatase; Prov 35.7 61 0.0013 16.0 4.0 37 27-66 23-59 (91)
343 COG1254 AcyP Acylphosphatases 35.7 63 0.0014 16.2 3.7 38 27-66 24-63 (92)
344 cd05897 Ig2_IL1R2_like Second 35.6 40 0.00086 16.9 1.9 16 36-51 27-42 (95)
345 PRK14430 acylphosphatase; Prov 35.5 62 0.0014 16.1 3.5 38 27-66 24-63 (92)
346 cd05736 Ig2_Follistatin_like S 35.5 42 0.00091 15.3 1.9 13 38-50 12-24 (76)
347 PRK14449 acylphosphatase; Prov 35.4 61 0.0013 16.0 4.5 37 27-66 23-59 (90)
348 KOG0324|consensus 35.1 40 0.00086 19.8 2.0 39 2-40 90-131 (214)
349 COG3054 Predicted transcriptio 34.8 89 0.0019 17.7 4.8 35 32-66 140-177 (184)
350 PRK14451 acylphosphatase; Prov 34.5 64 0.0014 15.9 3.8 37 27-66 23-59 (89)
351 cd05852 Ig5_Contactin-1 Fifth 34.4 46 0.001 15.4 1.9 13 38-50 15-27 (73)
352 PF02608 Bmp: Basic membrane p 34.3 54 0.0012 19.8 2.6 23 3-25 73-95 (306)
353 smart00592 BRK domain in trans 33.9 48 0.001 14.3 2.0 24 45-68 12-35 (45)
354 TIGR00365 monothiol glutaredox 33.8 67 0.0014 15.9 3.7 33 15-49 41-77 (97)
355 PF12992 DUF3876: Domain of un 33.6 42 0.0009 17.0 1.7 15 35-49 22-36 (95)
356 COG0052 RpsB Ribosomal protein 33.4 1.1E+02 0.0023 18.6 3.5 42 4-45 138-187 (252)
357 KOG3360|consensus 33.3 75 0.0016 16.3 3.7 39 27-67 28-68 (98)
358 COG2240 PdxK Pyridoxal/pyridox 33.1 55 0.0012 20.1 2.4 34 32-67 28-64 (281)
359 cd05749 Ig2_Tyro3_like Second 33.0 47 0.001 15.8 1.8 14 38-51 27-41 (81)
360 cd04973 Ig1_FGFR First immunog 32.9 30 0.00065 16.1 1.1 14 38-51 22-35 (79)
361 COG3640 CooC CO dehydrogenase 32.9 49 0.0011 20.0 2.1 26 16-41 30-55 (255)
362 cd05724 Ig2_Robo Second immuno 32.7 49 0.0011 15.3 1.9 15 37-51 25-39 (86)
363 PF11551 Omp28: Outer membrane 32.3 15 0.00032 20.7 0.0 23 26-48 8-30 (184)
364 PF08918 PhoQ_Sensor: PhoQ Sen 32.1 56 0.0012 18.6 2.2 19 37-55 72-92 (180)
365 cd05850 Ig1_Contactin-2 First 32.0 51 0.0011 16.0 1.9 15 37-51 32-46 (94)
366 cd01236 PH_outspread Outspread 31.6 80 0.0017 16.2 4.0 52 18-69 50-101 (104)
367 cd06105 ScCit1-2_like Saccharo 31.5 1.5E+02 0.0033 19.3 4.3 56 4-64 14-72 (427)
368 PF14275 DUF4362: Domain of un 31.5 63 0.0014 16.5 2.2 23 46-68 2-25 (98)
369 PF05176 ATP-synt_10: ATP10 pr 31.4 1.2E+02 0.0026 18.2 4.3 41 26-66 203-247 (252)
370 PF14466 DUF4425: Domain of un 31.4 74 0.0016 17.0 2.4 13 40-52 108-120 (121)
371 PF08459 UvrC_HhH_N: UvrC Heli 30.9 42 0.00092 18.6 1.6 37 33-69 23-69 (155)
372 PRK01191 rpl24p 50S ribosomal 30.7 92 0.002 16.6 2.9 33 20-56 26-58 (120)
373 PRK11633 cell division protein 30.7 1E+02 0.0022 18.2 3.2 45 24-68 161-210 (226)
374 cd05722 Ig1_Neogenin First imm 30.6 54 0.0012 15.7 1.9 14 38-51 28-41 (95)
375 PRK14426 acylphosphatase; Prov 30.5 78 0.0017 15.7 3.2 38 27-66 24-63 (92)
376 PRK14445 acylphosphatase; Prov 30.5 77 0.0017 15.6 3.8 37 27-66 24-60 (91)
377 COG2461 Uncharacterized conser 30.4 31 0.00067 22.2 1.1 22 28-49 141-162 (409)
378 TIGR01552 phd_fam prevent-host 30.1 56 0.0012 13.9 2.5 25 41-65 24-49 (52)
379 cd05747 Ig5_Titin_like M5, fif 30.1 57 0.0012 15.6 1.9 14 37-50 31-44 (92)
380 KOG1165|consensus 29.9 55 0.0012 21.1 2.1 35 34-68 82-120 (449)
381 cd04969 Ig5_Contactin_like Fif 29.8 65 0.0014 14.5 2.0 15 37-51 14-28 (73)
382 PF11399 DUF3192: Protein of u 29.7 78 0.0017 16.4 2.3 12 40-51 82-93 (102)
383 PF09582 AnfO_nitrog: Iron onl 29.5 21 0.00045 20.6 0.2 31 34-64 72-102 (202)
384 cd04972 Ig_TrkABC_d4 Fourth do 29.5 61 0.0013 15.4 1.9 14 37-50 28-41 (90)
385 PF02604 PhdYeFM_antitox: Anti 29.4 69 0.0015 14.7 3.2 25 39-63 25-50 (75)
386 cd01147 HemV-2 Metal binding p 29.4 1E+02 0.0022 17.7 3.1 40 4-44 65-105 (262)
387 PRK14447 acylphosphatase; Prov 29.3 84 0.0018 15.7 3.8 37 27-66 24-61 (95)
388 cd05728 Ig4_Contactin-2-like F 29.2 61 0.0013 15.3 1.9 14 37-50 27-40 (85)
389 COG1744 Med Uncharacterized AB 28.9 80 0.0017 19.7 2.7 22 2-23 108-129 (345)
390 PRK14420 acylphosphatase; Prov 28.9 83 0.0018 15.5 4.2 38 27-67 22-59 (91)
391 cd05761 Ig2_Necl-1-4_like Seco 28.8 66 0.0014 15.1 2.0 14 38-51 14-27 (82)
392 PF00571 CBS: CBS domain CBS d 28.6 54 0.0012 13.8 1.5 36 28-66 20-56 (57)
393 cd04967 Ig1_Contactin First Ig 28.2 64 0.0014 15.3 1.9 14 37-50 32-45 (91)
394 PF03659 Glyco_hydro_71: Glyco 28.2 1.1E+02 0.0024 19.5 3.3 21 35-55 366-386 (386)
395 cd05849 Ig1_Contactin-1 First 28.1 68 0.0015 15.6 2.0 14 37-50 32-45 (93)
396 PRK14434 acylphosphatase; Prov 27.5 91 0.002 15.5 4.1 38 27-66 22-60 (92)
397 PRK14422 acylphosphatase; Prov 27.5 91 0.002 15.5 3.5 37 27-66 26-62 (93)
398 PRK14439 acylphosphatase; Prov 26.8 1.3E+02 0.0028 17.0 4.0 38 27-67 95-132 (163)
399 TIGR01101 V_ATP_synt_F vacuola 26.6 1.1E+02 0.0024 16.1 2.9 48 15-68 60-112 (115)
400 PRK14436 acylphosphatase; Prov 26.5 95 0.0021 15.4 4.0 37 27-66 24-60 (91)
401 PF14424 Toxin-deaminase: The 26.4 1.2E+02 0.0025 16.3 2.9 18 4-21 113-130 (133)
402 PRK14425 acylphosphatase; Prov 25.9 1E+02 0.0022 15.4 4.1 39 26-66 25-65 (94)
403 PF07808 RED_N: RED-like prote 25.8 43 0.00092 19.9 1.1 46 18-69 173-221 (238)
404 PRK14443 acylphosphatase; Prov 25.7 1E+02 0.0022 15.5 4.2 37 27-66 24-60 (93)
405 PF09608 Alph_Pro_TM: Putative 25.4 1.1E+02 0.0025 18.1 2.8 27 41-67 176-205 (236)
406 cd05759 Ig2_KIRREL3-like Secon 25.1 87 0.0019 14.5 2.4 16 36-51 12-27 (82)
407 TIGR01764 excise DNA binding d 25.0 14 0.00031 15.2 -0.8 10 57-66 39-48 (49)
408 PF09776 Mitoc_L55: Mitochondr 24.9 84 0.0018 16.7 2.0 15 36-50 43-57 (116)
409 PF07679 I-set: Immunoglobulin 24.5 90 0.0019 14.4 2.5 16 37-52 28-43 (90)
410 CHL00039 psbF photosystem II p 24.5 49 0.0011 13.8 0.9 9 36-44 20-28 (39)
411 PF14237 DUF4339: Domain of un 24.1 74 0.0016 13.3 2.2 15 53-67 10-25 (45)
412 PF13959 DUF4217: Domain of un 23.9 54 0.0012 15.1 1.1 17 25-41 47-63 (65)
413 PRK14427 acylphosphatase; Prov 23.9 1.1E+02 0.0024 15.2 3.4 37 27-66 26-62 (94)
414 PF08543 Phos_pyr_kin: Phospho 23.8 1.6E+02 0.0035 17.1 3.8 39 29-67 14-54 (246)
415 PF14332 DUF4388: Domain of un 23.7 1.1E+02 0.0023 15.0 3.2 14 42-55 36-49 (103)
416 TIGR01793 cit_synth_euk citrat 23.6 2.2E+02 0.0048 18.6 4.1 56 4-64 17-75 (427)
417 cd05876 Ig3_L1-CAM Third immun 23.3 66 0.0014 14.5 1.3 14 37-50 11-24 (71)
418 cd05740 Ig_CEACAM_D4 Fourth im 23.2 93 0.002 15.0 1.9 13 38-50 31-43 (91)
419 PRK12311 rpsB 30S ribosomal pr 23.2 1.7E+02 0.0037 18.4 3.4 28 18-45 156-183 (326)
420 PF06999 Suc_Fer-like: Sucrase 23.2 1.6E+02 0.0035 16.9 3.7 29 39-67 185-214 (230)
421 KOG1727|consensus 23.1 69 0.0015 18.1 1.5 15 35-49 151-165 (169)
422 cd05752 Ig1_FcgammaR_like Frst 23.0 99 0.0021 14.5 2.0 13 38-50 30-42 (78)
423 cd05730 Ig3_NCAM-1_like Third 23.0 91 0.002 14.8 1.9 14 37-50 31-44 (95)
424 PRK02561 psbF cytochrome b559 22.9 50 0.0011 14.3 0.8 10 35-44 24-33 (44)
425 TIGR03544 DivI1A_domain DivIVA 22.8 71 0.0015 12.7 2.0 16 54-69 16-31 (34)
426 PF13167 GTP-bdg_N: GTP-bindin 22.8 1.2E+02 0.0026 15.4 2.3 40 27-66 14-54 (95)
427 PF14714 KH_dom-like: KH-domai 22.6 1E+02 0.0023 14.9 2.0 19 27-45 62-80 (80)
428 KOG3445|consensus 22.5 1.5E+02 0.0033 16.3 7.3 54 4-68 46-101 (145)
429 PF00789 UBX: UBX domain; Int 22.4 1E+02 0.0023 14.4 2.7 24 45-68 14-39 (82)
430 PRK14440 acylphosphatase; Prov 22.3 1.2E+02 0.0026 15.0 3.9 36 27-65 23-58 (90)
431 PF04940 BLUF: Sensors of blue 22.1 1.2E+02 0.0026 15.0 3.9 27 41-68 38-64 (93)
432 COG1666 Uncharacterized protei 21.9 1.7E+02 0.0036 16.5 4.1 31 26-57 26-56 (165)
433 cd05856 Ig2_FGFRL1-like Second 21.9 59 0.0013 14.7 1.0 14 37-50 22-35 (82)
434 KOG1360|consensus 21.8 2.1E+02 0.0045 19.1 3.6 43 22-68 288-332 (570)
435 cd05763 Ig_1 Subgroup of the i 21.7 88 0.0019 14.1 1.6 12 37-48 11-22 (75)
436 cd05743 Ig_Perlecan_D2_like Im 21.7 1E+02 0.0022 14.1 1.8 14 37-50 14-27 (78)
437 PTZ00151 translationally contr 21.5 87 0.0019 17.8 1.7 14 36-49 155-168 (172)
438 TIGR01333 cyt_b559_beta cytoch 21.5 57 0.0012 13.9 0.8 10 35-44 23-32 (43)
439 PF10281 Ish1: Putative stress 21.4 81 0.0018 12.8 1.6 12 57-68 5-16 (38)
440 PF07279 DUF1442: Protein of u 21.4 1.9E+02 0.0042 17.1 3.5 21 7-27 107-127 (218)
441 PF00838 TCTP: Translationally 21.2 49 0.0011 18.5 0.7 13 36-48 151-163 (165)
442 PF07315 DUF1462: Protein of u 21.2 1.4E+02 0.0029 15.3 2.7 53 9-65 29-92 (93)
443 cd05725 Ig3_Robo Third immunog 21.2 85 0.0018 13.9 1.5 13 37-49 11-23 (69)
444 PRK14423 acylphosphatase; Prov 21.1 1.3E+02 0.0028 14.9 4.0 36 27-65 25-60 (92)
445 COG1125 OpuBA ABC-type proline 21.1 1.7E+02 0.0037 18.2 2.9 40 4-51 176-216 (309)
446 cd02417 Peptidase_C39_likeA A 20.8 1.3E+02 0.0028 14.9 2.8 36 6-48 44-80 (121)
447 PF05941 Chordopox_A20R: Chord 20.7 2.4E+02 0.0052 17.9 4.4 43 2-44 109-168 (334)
448 PRK09702 PTS system arbutin-sp 20.6 1.7E+02 0.0038 16.3 4.6 25 45-69 122-146 (161)
449 cd05891 Ig_M-protein_C C-termi 20.6 1.1E+02 0.0024 14.7 1.9 15 36-50 28-42 (92)
450 cd01143 YvrC Periplasmic bindi 20.5 1.5E+02 0.0032 16.0 2.6 39 4-44 51-89 (195)
451 PF07533 BRK: BRK domain; Int 20.4 53 0.0012 14.3 0.6 24 45-68 14-37 (46)
452 TIGR00612 ispG_gcpE 1-hydroxy- 20.4 2.5E+02 0.0054 18.0 4.3 40 16-55 290-334 (346)
453 PF09627 PrgU: PrgU-like prote 20.3 1.5E+02 0.0032 15.4 2.5 17 34-50 45-61 (122)
454 PF08002 DUF1697: Protein of u 20.3 1.6E+02 0.0035 15.7 3.4 39 27-68 25-63 (137)
455 cd05873 Ig_Sema4D_like Immunog 20.2 1.1E+02 0.0024 14.9 1.8 14 38-51 24-37 (87)
456 PF11726 DUF3296: Protein of u 20.1 1.7E+02 0.0038 16.1 3.1 23 2-24 3-25 (180)
457 TIGR03286 methan_mark_15 putat 20.1 93 0.002 20.2 1.8 35 2-36 15-50 (404)
458 PRK14448 acylphosphatase; Prov 20.1 1.3E+02 0.0029 14.8 3.9 28 27-56 22-49 (90)
No 1
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=9.9e-20 Score=95.18 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=62.4
Q ss_pred CchHHHHHHHhhC--CC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEF--PD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~--~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
++.|++++++.++ .+ +.|++||++++++++++|+|+++||+++|++|+.+. +.|. +.+.|.+||.++.
T Consensus 48 ~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 48 QMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 4679999999987 54 999999999999999999999999999999999887 9999 9999999998764
No 2
>KOG0910|consensus
Probab=99.82 E-value=1.2e-19 Score=97.11 Aligned_cols=69 Identities=38% Similarity=0.548 Sum_probs=65.8
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+|.|.++++..++.+ ++++++|+|+..+++.+|+|.++||+++|+||++++++.|. +.+.|.++|++.+
T Consensus 78 ~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 78 MLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred HhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 478999999999977 99999999999999999999999999999999999999999 9999999999875
No 3
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.79 E-value=1.9e-18 Score=91.34 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=62.7
Q ss_pred hHHHHHHHhhCC-C-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 3 LVMLQELASEFP-D-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 3 ~p~~~~~~~~~~-~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+=++++++++|+ + +++++||.+++++++.+|+|.++||+++|++|+.+.++.|. +.+++.++|++++
T Consensus 55 avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 55 PVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred HHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 346899999997 4 99999999999999999999999999999999999999999 9999999999876
No 4
>KOG0907|consensus
Probab=99.79 E-value=1.5e-18 Score=89.09 Aligned_cols=68 Identities=41% Similarity=0.701 Sum_probs=64.1
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
+|.|.+++++.+|+++.|+++|+|++++++++++|.++||+++|++|+.+.++.|.+.+.+++.+..+
T Consensus 38 ~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 38 AIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred hhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999888999888764
No 5
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.78 E-value=2.9e-18 Score=88.43 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=58.4
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHH
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRS 63 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~ 63 (70)
+.|.+++++++|++ +.|+++|+++++.++.+|+|+++||+++|++|+.+.++.|. +.+++..
T Consensus 47 i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 47 VAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred hHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHhh
Confidence 68999999999988 88999999999999999999999999999999999999999 8888753
No 6
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.76 E-value=4e-17 Score=82.28 Aligned_cols=67 Identities=31% Similarity=0.582 Sum_probs=64.0
Q ss_pred chHHHHHHHhhCC-CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFP-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.|.|++++++++ ++.|+.+|++++++++++|+|.++||+++|++|+...++.|. +.+.|.+||+++
T Consensus 35 ~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 35 FKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred ccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 6799999999998 599999999999999999999999999999999999999999 999999999875
No 7
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.75 E-value=7.2e-18 Score=87.38 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=53.2
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
+|.|.++++++++++ +.|++||++++++++++|+|.++||+++|++|+.+.+..|.
T Consensus 31 ~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~ 87 (114)
T cd02954 31 QMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGT 87 (114)
T ss_pred HHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCC
Confidence 478999999999988 79999999999999999999999999999999999999885
No 8
>KOG0908|consensus
Probab=99.73 E-value=1.7e-17 Score=94.84 Aligned_cols=70 Identities=36% Similarity=0.609 Sum_probs=67.0
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhhcC
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANRS 70 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~~ 70 (70)
+++|.|+.++.+|++.+|++||+|+|+..+..+||.+.||+++|+||..++++.|++...|++++.++++
T Consensus 38 ~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 38 RIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYAS 107 (288)
T ss_pred hhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEeeeecCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998874
No 9
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.71 E-value=2.1e-16 Score=79.27 Aligned_cols=66 Identities=29% Similarity=0.481 Sum_probs=61.2
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
++.|.++++++.+++ +.++.+|+++++.++++|+|.++||+++|++|+.+.++.|. +.+.|.++|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 29 ELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred HHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence 367899999999976 88999999999999999999999999999999999999999 9999999874
No 10
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.70 E-value=3.4e-16 Score=79.81 Aligned_cols=67 Identities=30% Similarity=0.423 Sum_probs=60.5
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcH---HHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESE---DIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
|.|.+++++++++++.|+.+|+++++ +++++|+|.++||+++|++|+.+.++.|....+|...+..+
T Consensus 33 ~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 33 IYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred HhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCCHHHHHHHHHhc
Confidence 67999999999977999999999874 79999999999999999999999999999888888877653
No 11
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.3e-17 Score=94.35 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=65.6
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhcC
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANRS 70 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~~ 70 (70)
+.|.+++++.+|.+ +.+++||||+.+.++..|||+++||+++|++|+.++.+.|. ++..+.+|++++++
T Consensus 61 L~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 61 LTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 67999999999987 99999999999999999999999999999999999999999 88999999998763
No 12
>PHA02278 thioredoxin-like protein
Probab=99.70 E-value=2.6e-16 Score=80.43 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCc----HHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDES----EDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRST 64 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 64 (70)
+|.|.++++++++.. +.|.++|++++ ++++++|+|.++||+++|++|+.+.++.|. +.+.|.++
T Consensus 31 ~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 31 ILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred hHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 478999999988543 78999999975 689999999999999999999999999998 88888765
No 13
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.70 E-value=1.4e-16 Score=82.59 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=59.3
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHH-HHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIA-MAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~-~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+|.|.|+++++++.+ +.|++||++++.+++ ++|+|.++||+++|++|+...++.|. +.+.|..|+
T Consensus 46 ~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 46 AARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 378999999999977 999999999999998 58999999999999999999999999 999988763
No 14
>PRK10996 thioredoxin 2; Provisional
Probab=99.69 E-value=5.1e-16 Score=82.90 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=63.3
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
|.|.|+++++++.+ +.++++|++++++++++|+|.++||+++|++|+.+.++.|. +.+.|.+||++++
T Consensus 70 ~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 70 FAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 67899999998865 99999999999999999999999999999999999999999 9999999998763
No 15
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.69 E-value=1.8e-16 Score=80.27 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=59.2
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRST 64 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 64 (70)
+|.|.|+++++++++ +.|+++|++++++++++|+|+++||+++|++|+.+.++.|. +.+.|.+|
T Consensus 35 ~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 35 DLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred HhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 368999999999976 89999999999999999999999999999999999999999 88888775
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.68 E-value=4.8e-16 Score=80.21 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred chHHHHHHHhhCC--CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFP--DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
+.|.+++++++++ ++.++++|+++++.++++|+|.++||+++|++|+.+.++.|. +.+.|.++|++
T Consensus 42 ~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 42 IEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred hhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 6799999999985 489999999999999999999999999999999999999998 99999999976
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.67 E-value=1.5e-15 Score=77.81 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=63.8
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.|.++++++++++ +.++.+|+++.+.++++|++.++||+++|++|+.+.++.|. +.+.|.++|++.+
T Consensus 39 ~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 39 IAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred HhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 67999999999966 99999999999999999999999999999999999999999 9999999998875
No 18
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.67 E-value=3.9e-16 Score=79.34 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=59.2
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC-eEEeeeeCC-C-HHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKST-AKVEQFSGA-N-FDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~-~~~l~~~i 65 (70)
++.|.++++++++.+ +.++++|++++++++++|+|.++||+++|++| +.+.++.|. + .++|.+||
T Consensus 36 ~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 36 ALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 367999999999866 99999999999999999999999999999887 899999998 7 88888775
No 19
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=1.4e-15 Score=81.44 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=60.9
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEE-EEeCCe-EEeeeeC--------C-CHHHHHHHHHhh
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFV-FVKSTA-KVEQFSG--------A-NFDKLRSTVLAN 68 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~-~~~~g~-~~~~~~g--------~-~~~~l~~~i~~~ 68 (70)
+|.|+|+++++++++ +.|++||+|+++++++.|+|++.||++ +|++|+ .+++..| . +.++|.+.++.+
T Consensus 40 ~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 40 QMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred HHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 478999999999998 889999999999999999999887766 889999 9999999 6 778888888765
Q ss_pred c
Q psy11066 69 R 69 (70)
Q Consensus 69 ~ 69 (70)
.
T Consensus 120 ~ 120 (142)
T PLN00410 120 Y 120 (142)
T ss_pred H
Confidence 3
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.65 E-value=1.1e-15 Score=77.72 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=59.0
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCc-CcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVD-ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+|.|.|++++++++++.++.+|.+ +.++++++|+|.++||+++|++| .+.++.|. +.+.|.+||
T Consensus 35 ~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 35 SFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred hHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHHHhhC
Confidence 378999999999988889999998 78999999999999999999999 88999999 999998875
No 21
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.64 E-value=1.9e-15 Score=78.32 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=52.9
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
+|.|.++++++++++++|+++|.+++++++++|+|.++||+++|++|+++.++.|.
T Consensus 39 ~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 39 IMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECc
Confidence 36899999999999999999999999999999999999999999999999998875
No 22
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.64 E-value=5.2e-15 Score=75.27 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=59.6
Q ss_pred chHHHHHHHhhCCC--cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFPD--VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~~--i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 67 (70)
+.|.++++++++++ +.|..+|++ +++++++|+|+++||+++|++|+.+.++.|.+.+.+.++|++
T Consensus 35 ~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 35 VVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred HhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEEEEEecCChHHHHHHHhh
Confidence 67899999999863 789999999 788999999999999999999999999999988999999875
No 23
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.63 E-value=7.9e-15 Score=73.53 Aligned_cols=68 Identities=37% Similarity=0.553 Sum_probs=62.4
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.|.++++++++++ +.|+.+|+++++.++++|++.++||+++|++|+.+.++.|. +.+.+.++|++.+
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 32 IAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred hCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 56889999988875 99999999999999999999999999999999999999999 8899999998753
No 24
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.62 E-value=8e-15 Score=73.88 Aligned_cols=65 Identities=31% Similarity=0.459 Sum_probs=60.0
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+.|.++++++++++ +.+..+|+++.+++++++++.++||+++|++|+++.++.|. +.++|.++++
T Consensus 31 ~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 31 LKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred HHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhhC
Confidence 56889999998875 99999999999999999999999999999999999999999 8999998873
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.62 E-value=6.7e-15 Score=74.42 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=58.9
Q ss_pred CchHHHHHHHhhCC--CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 1 MSLVMLQELASEFP--DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 1 ~~~p~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
++.|.|+++++.+. ++.++.+|+++++.++++|+|.++||++++++|+. .++.|. +.+.|.++|++
T Consensus 33 ~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 33 QLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred HHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 36799999998874 38999999999999999999999999999999974 788999 99999999864
No 26
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.61 E-value=9.3e-15 Score=73.26 Aligned_cols=65 Identities=35% Similarity=0.662 Sum_probs=59.0
Q ss_pred CchHHHHHHHhh-CCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHH
Q psy11066 1 MSLVMLQELASE-FPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 65 (70)
+|.|.+++++++ ++++.++++|.++.++++.+|++.++||+++|++|+.+.++.|.+.+.|.++|
T Consensus 31 ~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 31 QMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred HHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCCCHHHHHHhh
Confidence 367899999998 45699999999999999999999999999999999999999999888888776
No 27
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.61 E-value=4.6e-15 Score=74.85 Aligned_cols=64 Identities=25% Similarity=0.514 Sum_probs=58.1
Q ss_pred chHHHHHHHhhCC----CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 2 SLVMLQELASEFP----DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+.|.++++++++. ++.++.+|++++.+++++|+|.++||+++|++|+.+.++.|. +.+.|.+||
T Consensus 34 ~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 34 LAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred hCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 6789999988874 389999999999999999999999999999999999999999 999888775
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.60 E-value=5.8e-15 Score=76.28 Aligned_cols=55 Identities=24% Similarity=0.470 Sum_probs=51.8
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
+|.|.+++++++++++.|+++|++++ .++++|+|.++||+++|++|+.+.++.|.
T Consensus 41 ~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 41 ILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEEecH
Confidence 36899999999999999999999998 99999999999999999999999999884
No 29
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.59 E-value=9.4e-15 Score=74.79 Aligned_cols=65 Identities=31% Similarity=0.498 Sum_probs=56.1
Q ss_pred CchHHHHHHHhhC----C---CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCe-EEeeeeCC-CHHHHHHHH
Q psy11066 1 MSLVMLQELASEF----P---DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTA-KVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~~----~---~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~-~~~~l~~~i 65 (70)
++.|.|+++++.+ + .+.++++|++++++++++|+|+++||+++|++|+ ....+.|. +.+.|.+||
T Consensus 35 ~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 35 MLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 3678999888753 2 3899999999999999999999999999999998 45788898 899998875
No 30
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.59 E-value=2.3e-14 Score=79.13 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.5
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--------CHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--------NFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--------~~~~l~~~i~~ 67 (70)
|.|.|++++++|+.++|++||++++ .++..|+|.++||+++|++|+.+.++.|. +.+.|+.+|.+
T Consensus 101 m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 101 LNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred HHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 6799999999999999999999987 89999999999999999999999988874 35567766654
No 31
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.59 E-value=2.7e-14 Score=73.95 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=60.4
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEe--eeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVE--QFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~--~~~g~-~~~~l~~~i~~~~ 69 (70)
|.|.++++++.++.+.+..+|.+++++++.+|+|.++||+++|++|.... ++.|. +..++.++|..++
T Consensus 40 ~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 40 TKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred HHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHH
Confidence 67999999988866999999999999999999999999999999876544 78899 8899999998764
No 32
>PTZ00051 thioredoxin; Provisional
Probab=99.58 E-value=2.7e-14 Score=71.75 Aligned_cols=61 Identities=38% Similarity=0.572 Sum_probs=56.5
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLR 62 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 62 (70)
+.|.+++++++++++.++.+|++++.+++++|++.++||+++|++|+.+.++.|...+.|.
T Consensus 36 ~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~~ 96 (98)
T PTZ00051 36 IAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLGANDEALK 96 (98)
T ss_pred HhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeCCCHHHhh
Confidence 6788999999998899999999999999999999999999999999999999999776665
No 33
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.58 E-value=2.8e-14 Score=81.33 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=62.3
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.|.|+++++++++ +.++.+|++++++++++|+|.++||+++|++|+.+....|. +.++|.+|+.+.
T Consensus 70 ~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 70 MAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHH
Confidence 67999999999977 99999999999999999999999999999999999888898 999999998764
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.57 E-value=2.9e-14 Score=71.71 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=60.9
Q ss_pred chHHHHHHHhhCC---CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFP---DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.|.++++++.+. ++.++.+|+++++.++++|+++++||+++|++|+...++.|. +.++|..||++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 31 LAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred hChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhcC
Confidence 5688999988875 399999999999999999999999999999888768889999 9999999998763
No 35
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.56 E-value=4.6e-14 Score=79.86 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=60.1
Q ss_pred CchHHHHHHHhhCCC--cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEE-eeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPD--VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKV-EQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~--i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~-~~~~g~-~~~~l~~~i~~~~ 69 (70)
+|.|.++++++++++ +.++++|.+++++++++|+|.++||+++|++|+.+ .++.|. +.+++.++|+.++
T Consensus 39 ~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 39 ETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 368999999999976 45777777799999999999999999999999987 599999 8889999887653
No 36
>PTZ00062 glutaredoxin; Provisional
Probab=99.55 E-value=4.2e-14 Score=79.66 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=56.6
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 69 (70)
+|.|++++++++|+++.|++||.+ |+|.++||+++|++|+++.++.|.+...|..++.++.
T Consensus 34 ~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 34 QLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRGWA 94 (204)
T ss_pred HHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHHHc
Confidence 478999999999999999999987 9999999999999999999999999999988887764
No 37
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.55 E-value=6.3e-14 Score=72.53 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=55.5
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEee---------eeCC--CHHHHHHHHHh
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQ---------FSGA--NFDKLRSTVLA 67 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~---------~~g~--~~~~l~~~i~~ 67 (70)
+|.|.|+++++++++ +.|++||+|+.+++++.|+|.+.||+++|++|+-+.- +.+. +.+++.+.++.
T Consensus 31 ~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 31 QLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred HHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 378999999999998 9999999999999999999999999999999986532 2233 45666666653
No 38
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.53 E-value=1.2e-13 Score=69.73 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=57.6
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC-eEEeeeeCC-CHHHHHHHH
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKST-AKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~l~~~i 65 (70)
+.|.|.++++++.+ +.++.+|++++++++++|+|+++||+++|++| +....+.|. +.++|.+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 36 LAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 67899999998865 99999999999999999999999999999888 566788888 999998886
No 39
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.51 E-value=1e-13 Score=70.72 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=58.0
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcC--cHHHHHHcCCCccCEEEEEeCCe-----EEeeeeCC-CHHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDE--SEDIAMAYDISSMPTFVFVKSTA-----KVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~-----~~~~~~g~-~~~~l~~~i~ 66 (70)
++.|.++++++++.+ +.++.+|++. +++++++|+|.++||+++|++|+ ....+.|. +.+.|.+||+
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 35 NLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred hhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 367999999999876 8899999998 88999999999999999998885 46778899 9999999874
No 40
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.51 E-value=2.7e-13 Score=72.70 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=60.0
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcCc--HHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDES--EDIAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+|.|.++++++++.+ +.|+.+|++.. .+++++|+|.++||+++| ++|+.+.++.|. +.+.|.++|++++
T Consensus 37 ~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 37 EMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred HhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 367999999999865 78888887754 588999999999999999 589999999999 8999999998765
No 41
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.51 E-value=1.5e-13 Score=69.38 Aligned_cols=64 Identities=19% Similarity=0.371 Sum_probs=57.0
Q ss_pred chHHHHHHHhhCC--C-cEEEEEeCcC--cHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 2 SLVMLQELASEFP--D-VVFLKVDVDE--SEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~--~-i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+.|.++++++.+. + +.++.+|+++ ++.++++|+|+++||+++|++|+.+.++.|. +.+.+.+||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 35 MKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred hCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 5688888888775 3 8899999998 8999999999999999999999999999999 999988875
No 42
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.51 E-value=1.5e-13 Score=74.44 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=51.7
Q ss_pred CchHHHHHHHhhCC--CcEEEEEeCcCcHHHHHHcCCCc------cCEEEEEeCCeEEeeeeCC
Q psy11066 1 MSLVMLQELASEFP--DVVFLKVDVDESEDIAMAYDISS------MPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 1 ~~~p~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~------~Pt~~~~~~g~~~~~~~g~ 56 (70)
++.|.+++++++++ ++.|++||++++++++++|+|.+ +||+++|++|+++.++.|+
T Consensus 64 ~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 64 NFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred HHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEecc
Confidence 36899999999986 39999999999999999999998 9999999999999999984
No 43
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.50 E-value=5e-13 Score=65.44 Aligned_cols=65 Identities=40% Similarity=0.674 Sum_probs=59.0
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+.|.++++++..+++.++.+|+++.+.++++|++.++||++++++|+.+..+.|. +.+.|.++|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 28 IAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred hhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHhC
Confidence 5678888888866799999999999999999999999999999999999999999 8888988873
No 44
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.49 E-value=1.8e-13 Score=69.20 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=60.6
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCC--ccCEEEEEeC--CeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDIS--SMPTFVFVKS--TAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.|.++++++++.+ +.|+.+|+++++++++.|++. ++||++++++ |+......|. +.+.|.+|++++
T Consensus 30 ~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 30 LRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 67899999999976 999999999999999999999 9999999988 7777667777 899999999875
No 45
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.48 E-value=4.5e-13 Score=68.16 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=57.7
Q ss_pred chHHHHHHHhhCC----CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFP----DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.|.|+++++.+. ++.+..+|+++.++++++|+|.++||+++|++| ...++.|. +.+.|.+++++.
T Consensus 33 ~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 33 LEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred hChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-CceeecCCCCHHHHHHHHHhh
Confidence 6789999998862 288999999999999999999999999999877 45678898 999999999875
No 46
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=5.6e-13 Score=74.57 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=55.1
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--------CHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--------NFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--------~~~~l~~~i~~ 67 (70)
|.|.|++++++|+.++|+++|++++ +..|++.++||+++|++|+.+.++.|. +.+.|+.+|.+
T Consensus 120 m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 120 LNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred HHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 6799999999999999999999865 689999999999999999999999884 45667776654
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.44 E-value=6.9e-13 Score=66.03 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=56.9
Q ss_pred chHHHHHHHhhC--C-CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC-eEEeeeeCC-CHHHHHHHH
Q psy11066 2 SLVMLQELASEF--P-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKST-AKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~--~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~l~~~i 65 (70)
+.|.++++++.+ . ++.++.+|++++..++++|+|+++||+++|++| +...++.|. +.+.+.+|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 33 LAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred hhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 578899999888 3 499999999999999999999999999999877 888999998 888888764
No 48
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.43 E-value=2.9e-12 Score=62.39 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=55.8
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.|.+++++++++. +.+..+|.++.++++++|++.++||+++ +|+ .++.|. +.+.|.++|.+.+
T Consensus 17 ~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 17 AKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred HHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHHHHhhC
Confidence 57889999998865 9999999999999999999999999986 776 378898 9999999998753
No 49
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.43 E-value=6.1e-13 Score=67.61 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=54.9
Q ss_pred chHHH---HHHHhhCC-CcEEEEEeCcC----cHHHHHHcCCCccCEEEEEe--CCeEEeeeeCC-CHHHHHHHHH
Q psy11066 2 SLVML---QELASEFP-DVVFLKVDVDE----SEDIAMAYDISSMPTFVFVK--STAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~---~~~~~~~~-~i~~~~vd~~~----~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
|.|.+ +++++.+. ++.++.+|+++ .+.++++|++.++||+++|+ +|+.+.++.|+ +.++|.++|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 29 NEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 44555 56777776 59999999987 57899999999999999997 79999999999 9999998874
No 50
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.41 E-value=1.6e-12 Score=67.70 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=54.1
Q ss_pred HHHHHHHhhC---C-CcEEEEEeC-----cCcHHHHHHcCCC--ccCEEEEEeCCe--EEeeeeC-C-CHHHHHHHHHhh
Q psy11066 4 VMLQELASEF---P-DVVFLKVDV-----DESEDIAMAYDIS--SMPTFVFVKSTA--KVEQFSG-A-NFDKLRSTVLAN 68 (70)
Q Consensus 4 p~~~~~~~~~---~-~i~~~~vd~-----~~~~~~~~~~~i~--~~Pt~~~~~~g~--~~~~~~g-~-~~~~l~~~i~~~ 68 (70)
|.+.+++.++ . .+.+++||+ .++.+++++|+|+ ++||+.+|++|. ....+.| . +.+.|.+||.+.
T Consensus 36 ~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 36 EAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 6788888776 2 388999999 4678999999999 999999999985 4467788 3 889999999874
No 51
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.39 E-value=2.3e-12 Score=65.00 Aligned_cols=64 Identities=33% Similarity=0.541 Sum_probs=56.1
Q ss_pred chHHHHHHHhhCC---CcEEEEEeCcC-cHHHHHHcCCCccCEEEEEeCC-eEEeeeeCC-CHHHHHHHH
Q psy11066 2 SLVMLQELASEFP---DVVFLKVDVDE-SEDIAMAYDISSMPTFVFVKST-AKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~---~i~~~~vd~~~-~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~l~~~i 65 (70)
+.|.++++++.+. ++.++.+|+++ +++++++|+|.++||+++|++| +....+.|. +.+.|.+||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 36 LAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred hChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 5688999998875 39999999999 9999999999999999999766 677788898 889888875
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.37 E-value=9.8e-12 Score=65.22 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=51.4
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCcH-----------HHHHHcC----CCccCEEEEEeCCeEEeeeeCC--CHHHHHH
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDESE-----------DIAMAYD----ISSMPTFVFVKSTAKVEQFSGA--NFDKLRS 63 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~~-----------~~~~~~~----i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~ 63 (70)
+|.|.|++++++ .++.+..+|.+.++ ++.+.|+ +.++||+++|++|+.+.++.|. +.++|.+
T Consensus 40 ~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~ 118 (122)
T TIGR01295 40 KFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQD 118 (122)
T ss_pred HHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHH
Confidence 478999999998 34778888877432 4556665 5569999999999999999994 6889988
Q ss_pred HHH
Q psy11066 64 TVL 66 (70)
Q Consensus 64 ~i~ 66 (70)
++.
T Consensus 119 ~~~ 121 (122)
T TIGR01295 119 IAA 121 (122)
T ss_pred Hhh
Confidence 864
No 53
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.36 E-value=3.2e-12 Score=64.43 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=55.3
Q ss_pred CchHHHHHHHhhCCC---cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCe--EEeeeeCC-CHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD---VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTA--KVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~---i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~~i 65 (70)
++.|.++++++.+.+ +.++++|++++ +++..+++.++||+++|++|+ ...++.|. +.+.|.+||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 35 ALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred HHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 367999999998754 89999999987 678899999999999999887 67788998 999988875
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.34 E-value=1.3e-11 Score=76.04 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=59.9
Q ss_pred CchHHHHHHHhhC----CCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEF----PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~----~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
++.|.++++++.+ .++.++.+||+++.+++++|+|.++||+++|++|+.+ ++.|. +.+.|.+|+.+.+
T Consensus 66 ~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 66 RLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred HhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhh
Confidence 3678888888654 2499999999999999999999999999999999877 89998 9999999998764
No 55
>KOG0912|consensus
Probab=99.33 E-value=3.3e-12 Score=75.32 Aligned_cols=70 Identities=30% Similarity=0.509 Sum_probs=61.9
Q ss_pred CchHHHHHHHhh----CCC--cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEe-eeeCC-CHHHHHHHHHhhcC
Q psy11066 1 MSLVMLQELASE----FPD--VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVE-QFSGA-NFDKLRSTVLANRS 70 (70)
Q Consensus 1 ~~~p~~~~~~~~----~~~--i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~-~~~g~-~~~~l~~~i~~~~~ 70 (70)
+++|+|++++.. +++ +..++|||+...+++++|.|..+||+.+|+||.... .+.|. +.+.|.++|++.++
T Consensus 30 ~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 30 MLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred HHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 468999998865 553 999999999999999999999999999999999876 78899 99999999987653
No 56
>KOG0190|consensus
Probab=99.32 E-value=6.1e-12 Score=78.01 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=61.9
Q ss_pred CchHHHHHHHhhCC----CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFP----DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+++|.|+++++... .+..++||++++.++|++|+|+++||+.+|+||+....+.|. ..+.|..|+.+..
T Consensus 59 ~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 59 ALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred hhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 47899999998752 399999999999999999999999999999999988889999 9999999997653
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.32 E-value=1.6e-11 Score=74.95 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=60.4
Q ss_pred chHHHHHHHhhCC----CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeE-EeeeeCC-CHHHHHHHHHhhc
Q psy11066 2 SLVMLQELASEFP----DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK-VEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 2 ~~p~~~~~~~~~~----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.|.++++++.+. ++.|+.+||+++++++++|+|.++||+++|++|+. +.++.|. +.+.|.+|+.+..
T Consensus 36 ~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 36 LAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred hhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhc
Confidence 5688888887652 39999999999999999999999999999999988 8889999 9999999998764
No 58
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.28 E-value=5.1e-11 Score=67.48 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=56.2
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
+.|.+++++.+++++.+..+|.+++++++.+|+|.++||++++++|+. +.|. +.++|.++|.+
T Consensus 151 ~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 151 AVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence 567888888887779999999999999999999999999999988864 8899 88999999875
No 59
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.24 E-value=5.3e-11 Score=61.05 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=52.9
Q ss_pred CchHHHHHHHhhCCC--cEEEEEeCcC-cHHHHH-HcCCCccCEEEEEeCC-eEEeeeeC-C-CHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPD--VVFLKVDVDE-SEDIAM-AYDISSMPTFVFVKST-AKVEQFSG-A-NFDKLRSTV 65 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~--i~~~~vd~~~-~~~~~~-~~~i~~~Pt~~~~~~g-~~~~~~~g-~-~~~~l~~~i 65 (70)
+|.|.++++++.+.+ +.++.+|++. ...++. .|+++++||+++|++| .....+.| . +.+.|..||
T Consensus 38 ~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 38 AMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred HHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 367899999998863 8999999997 567776 5999999999999765 56777888 4 788888774
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.22 E-value=7.2e-11 Score=72.71 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=60.4
Q ss_pred CchHHHHHHHhhCCC---cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEE-eeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPD---VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKV-EQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~---i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~-~~~~g~-~~~~l~~~i~~~~ 69 (70)
.|.|.|+++++.+.+ +.++.+|++.++..++.|+++++||+++|++|..+ .++.|. +.+.|.++|+++.
T Consensus 392 ~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 392 NLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence 367999999988743 88999999999999999999999999999877654 588999 9999999998875
No 61
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.22 E-value=1e-10 Score=61.16 Aligned_cols=62 Identities=15% Similarity=0.329 Sum_probs=50.7
Q ss_pred HHHhhCC-CcEEEEEeCcCc-------------HHHHHHcCCCccCEEEEEeC--CeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 8 ELASEFP-DVVFLKVDVDES-------------EDIAMAYDISSMPTFVFVKS--TAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 8 ~~~~~~~-~i~~~~vd~~~~-------------~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
.+.+.+. ++.++.+|.+.. .+++.+|++.++||+++|.+ |+.+.++.|. +.+.+.++|+.++
T Consensus 41 ~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 41 AVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred HHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 3444443 478889998764 68899999999999999964 6999999999 9999999988765
No 62
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.14 E-value=6.2e-10 Score=55.57 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=47.8
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLR 62 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 62 (70)
+.+.++++++.++++.+..+|.++.++++++|+|.++||+++ ||+.+.+ |. +.+++.
T Consensus 30 ~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~~ 87 (89)
T cd03026 30 VVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEIL 87 (89)
T ss_pred HHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHHh
Confidence 356788899999889999999999999999999999999974 8887664 76 666543
No 63
>KOG4277|consensus
Probab=99.12 E-value=1.9e-10 Score=68.31 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=58.8
Q ss_pred CchHHHHHHHhhCCC----cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPD----VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~----i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 69 (70)
++.|+|+++..+.++ ++++++|++..+.++.+|+|+++||+.+|++|..+....|...+.|.++-.+..
T Consensus 60 kLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 60 KLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAIIEFAHRCA 132 (468)
T ss_pred cccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccHHHHHHHHHhcc
Confidence 367999999887643 999999999999999999999999999999987776554448899998887754
No 64
>PLN02309 5'-adenylylsulfate reductase
Probab=99.11 E-value=5.8e-10 Score=69.15 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=56.1
Q ss_pred CchHHHHHHHhhCCC--cEEEEEeCc-CcHHHHH-HcCCCccCEEEEEeCCe-EEeeee-CC-CHHHHHHHHHhh
Q psy11066 1 MSLVMLQELASEFPD--VVFLKVDVD-ESEDIAM-AYDISSMPTFVFVKSTA-KVEQFS-GA-NFDKLRSTVLAN 68 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~--i~~~~vd~~-~~~~~~~-~~~i~~~Pt~~~~~~g~-~~~~~~-g~-~~~~l~~~i~~~ 68 (70)
+|.|.|+++++++.+ +.|+++|++ .+.+++. .|+|.++||+++|++|. ....+. |. +.+.|..|++..
T Consensus 382 ~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 382 AMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 378999999999853 999999999 7788886 69999999999998775 334555 45 899999999864
No 65
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.11 E-value=6e-10 Score=58.32 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=49.6
Q ss_pred CchHHHHHHHhhCC-CcEEEEEeCcC-------cHHHHHHcCCC-ccCEEEEEeCCeEEeeeeCCCHHHHHHH
Q psy11066 1 MSLVMLQELASEFP-DVVFLKVDVDE-------SEDIAMAYDIS-SMPTFVFVKSTAKVEQFSGANFDKLRST 64 (70)
Q Consensus 1 ~~~p~~~~~~~~~~-~i~~~~vd~~~-------~~~~~~~~~i~-~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 64 (70)
++.|.+++++.+++ ++.|++||+++ +.+++..|+|. ++||+++|++|+.+..-.-.+...+..+
T Consensus 45 ~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 45 KAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMF 117 (119)
T ss_pred hhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence 36799999999998 59999999976 46899999999 9999999988865443332355555444
No 66
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.07 E-value=9.9e-10 Score=68.20 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=54.7
Q ss_pred CchHHHHHHHhhCCC--cEEEEEeCcCcH-HH-HHHcCCCccCEEEEEeCCe-EEeeee-CC-CHHHHHHHHHhh
Q psy11066 1 MSLVMLQELASEFPD--VVFLKVDVDESE-DI-AMAYDISSMPTFVFVKSTA-KVEQFS-GA-NFDKLRSTVLAN 68 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~--i~~~~vd~~~~~-~~-~~~~~i~~~Pt~~~~~~g~-~~~~~~-g~-~~~~l~~~i~~~ 68 (70)
+|.|.|+++++++.+ +.|+.+|++.+. .+ +++|+|.++||+++|++|. ....+. |. +.+.|..|++..
T Consensus 388 ~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 388 AMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 378999999999854 899999998653 34 4789999999999999885 344565 56 899999999754
No 67
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.06 E-value=2.3e-09 Score=51.97 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=45.5
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHH
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i 65 (70)
+.|.+++++++++. +.+.++| ..+.+.+|++.++||+++ ||+++ +.|. +.+++.+++
T Consensus 16 ~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 16 TEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 57899999999975 8888887 234478899999999998 89877 7774 557787765
No 68
>PHA02125 thioredoxin-like protein
Probab=99.04 E-value=3.4e-09 Score=51.19 Aligned_cols=56 Identities=29% Similarity=0.560 Sum_probs=44.8
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i 65 (70)
+.|.|+++. ..++++|.+++++++++|+|.++||++ +|+.+.++.|. +..+|.+.+
T Consensus 16 ~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 16 VKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred HHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 456665442 568899999999999999999999987 78888999997 446776654
No 69
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.02 E-value=2.3e-09 Score=62.65 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=53.0
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--------CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--------NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--------~~~~l~~~i~~~ 68 (70)
|...|..++.+|+.++|++|....++ +...|.+..+||+++|++|..+..++|. +...|+.+|.++
T Consensus 164 mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 164 MNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 45678999999999999999998876 7889999999999999999999888874 345788877654
No 70
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.96 E-value=1.1e-09 Score=56.77 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=42.7
Q ss_pred chHHHHHHHhhCC---C-cEEEEEeCc--CcHHHHHHcCCCccCEEEEEeCCeEEeeeeC
Q psy11066 2 SLVMLQELASEFP---D-VVFLKVDVD--ESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55 (70)
Q Consensus 2 ~~p~~~~~~~~~~---~-i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 55 (70)
|.|.|+++++++. + +.++.+|++ ++++++++|+++++||+++|++|. .....|
T Consensus 37 ~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~ 95 (114)
T cd02992 37 FAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS-KEATDG 95 (114)
T ss_pred HhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence 6789999998763 3 889999975 467899999999999999999887 433333
No 71
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.95 E-value=7.2e-09 Score=48.74 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=39.8
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeE
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 49 (70)
+.|.++++++.++++.+..+|.+++++++++|++.++||+++ +|+.
T Consensus 17 ~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 17 AVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred HHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 568889998887779999999999999999999999999865 5643
No 72
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.93 E-value=4.3e-09 Score=64.41 Aligned_cols=67 Identities=21% Similarity=0.466 Sum_probs=55.8
Q ss_pred chHHHHHHHhhCC----CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEE--eeeeCC-CHHHHHHHHHhhcC
Q psy11066 2 SLVMLQELASEFP----DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKV--EQFSGA-NFDKLRSTVLANRS 70 (70)
Q Consensus 2 ~~p~~~~~~~~~~----~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~~~ 70 (70)
|.|.++++++.+. ++.++++|++.+. ++. +++.++||+++|++|... ..+.|. +.+.|.+||.+..+
T Consensus 382 ~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 382 LAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 6799999999875 3889999999764 344 999999999999988653 677888 99999999988753
No 73
>KOG1672|consensus
Probab=98.92 E-value=2.1e-09 Score=60.03 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=52.2
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
|...++.+++.+-+.+|++||+..+|=++.+.+|..+||+.+|++|+.+++++|+
T Consensus 102 mDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 102 MDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred HHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeH
Confidence 5578999999999999999999999999999999999999999999999999996
No 74
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.89 E-value=1.5e-08 Score=64.40 Aligned_cols=63 Identities=16% Similarity=0.351 Sum_probs=53.0
Q ss_pred HHHHhhCCCcEEEEEeCcCc----HHHHHHcCCCccCEEEEEe-CCeE--EeeeeCC-CHHHHHHHHHhhc
Q psy11066 7 QELASEFPDVVFLKVDVDES----EDIAMAYDISSMPTFVFVK-STAK--VEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 7 ~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~Pt~~~~~-~g~~--~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+++.+.++++.++++|.+++ .+++++|++.++||+++|+ +|++ ..++.|. +.+++.+++++..
T Consensus 500 ~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 500 PQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 45666676788999998753 6789999999999999995 8887 4789999 9999999998764
No 75
>KOG0191|consensus
Probab=98.86 E-value=1.6e-08 Score=61.54 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=58.7
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.|.+.++++.+.+ +.++.||++++.+++++|+|++.||+.+|.+|.....+.|. +.+.+.+++...
T Consensus 65 l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 65 LAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKE 133 (383)
T ss_pred hchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHh
Confidence 57899999998877 99999999999999999999999999999988666777777 888888877654
No 76
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.86 E-value=5.4e-08 Score=57.11 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=51.3
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcC-----------cHHHHHHcCCCccCEEEEEeC-CeEEe-eeeCC-CHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDE-----------SEDIAMAYDISSMPTFVFVKS-TAKVE-QFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~~~~-~~~g~-~~~~l~~~i~~ 67 (70)
+.|.+++++++++ +.+..|+.|. +..++++|+|.++||++++++ |+.+. ...|. +.++|.+.|..
T Consensus 184 ~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 184 QAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILL 262 (271)
T ss_pred HhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHH
Confidence 6799999999996 5555555543 356899999999999999975 55554 45698 99999988875
Q ss_pred hc
Q psy11066 68 NR 69 (70)
Q Consensus 68 ~~ 69 (70)
..
T Consensus 263 ~a 264 (271)
T TIGR02740 263 AA 264 (271)
T ss_pred Hh
Confidence 43
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.80 E-value=3.2e-08 Score=50.58 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=40.1
Q ss_pred CcEEEEEeCcCc--------------------HHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHH
Q psy11066 15 DVVFLKVDVDES--------------------EDIAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 15 ~i~~~~vd~~~~--------------------~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i 65 (70)
++.++.++.+.. .++++.|+|+++||++++ ++|+.+.++.|+ +.++|.++|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 40 DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 377777777643 358899999999999999 489999999999 999998875
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.77 E-value=1.1e-07 Score=59.97 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=53.7
Q ss_pred chHHHHHHHhhCC--CcEEEEE----------------------------eCcCcHHHHHHcCCCccCEEEEE-eCCeEE
Q psy11066 2 SLVMLQELASEFP--DVVFLKV----------------------------DVDESEDIAMAYDISSMPTFVFV-KSTAKV 50 (70)
Q Consensus 2 ~~p~~~~~~~~~~--~i~~~~v----------------------------d~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~ 50 (70)
+.|.++++.+++. ++.++.| +.|....+++.|+|.++||++++ ++|+.+
T Consensus 74 emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV 153 (521)
T PRK14018 74 ELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQ 153 (521)
T ss_pred HHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEE
Confidence 5688999988875 4655544 33456678999999999999776 799999
Q ss_pred eeeeCC-CHHHHHHHHHh
Q psy11066 51 EQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 51 ~~~~g~-~~~~l~~~i~~ 67 (70)
.++.|. +.++|.++|+.
T Consensus 154 ~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 154 RIVKGSISEAQALALIRN 171 (521)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 999999 99999999884
No 79
>KOG0914|consensus
Probab=98.74 E-value=6.5e-09 Score=59.21 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=48.1
Q ss_pred chHHHHHHHhhCCC--cEEEEEeCcCcHHHHHHcCCC------ccCEEEEEeCCeEEeeeeC
Q psy11066 2 SLVMLQELASEFPD--VVFLKVDVDESEDIAMAYDIS------SMPTFVFVKSTAKVEQFSG 55 (70)
Q Consensus 2 ~~p~~~~~~~~~~~--i~~~~vd~~~~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~g 55 (70)
.+|++.+++.+|.. ++|++||....++.+++|+|. .+||+++|++|+++.|..-
T Consensus 162 ~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 162 FSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred cccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhhcCcc
Confidence 57999999999954 999999999999999999876 7999999999999876543
No 80
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.69 E-value=1.6e-07 Score=48.33 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=48.4
Q ss_pred HHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHH
Q psy11066 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDK 60 (70)
Q Consensus 5 ~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~ 60 (70)
++.++.+.+++ .....++......+..+|++..+|+++++++|+.+..+.|. +.++
T Consensus 49 ILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 49 ILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred EcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 67888899987 77888887778899999999999999999999999999997 6543
No 81
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=7.5e-07 Score=48.52 Aligned_cols=66 Identities=23% Similarity=0.424 Sum_probs=53.8
Q ss_pred hHHHHHHHhhCCC--cEEEEEeCcC----------------------cHHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-
Q psy11066 3 LVMLQELASEFPD--VVFLKVDVDE----------------------SEDIAMAYDISSMPTFVFV-KSTAKVEQFSGA- 56 (70)
Q Consensus 3 ~p~~~~~~~~~~~--i~~~~vd~~~----------------------~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~- 56 (70)
.|.+.++.+++.+ +.++.++++. ...+++.|++.++|+++++ ++|+.+..+.|.
T Consensus 80 ~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~ 159 (173)
T PRK03147 80 MPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEM 159 (173)
T ss_pred HHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCC
Confidence 4677888888753 7788887653 4567899999999998888 589999899998
Q ss_pred CHHHHHHHHHhh
Q psy11066 57 NFDKLRSTVLAN 68 (70)
Q Consensus 57 ~~~~l~~~i~~~ 68 (70)
+.+++.+++++.
T Consensus 160 ~~~~l~~~l~~~ 171 (173)
T PRK03147 160 TEEQLEEYLEKI 171 (173)
T ss_pred CHHHHHHHHHHh
Confidence 999999998865
No 82
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.63 E-value=6.5e-07 Score=48.71 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=48.2
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCc------------HHHH-HHc---CCCccCEEEEE-eCCeE-EeeeeCC-CHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDES------------EDIA-MAY---DISSMPTFVFV-KSTAK-VEQFSGA-NFDKLR 62 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~------------~~~~-~~~---~i~~~Pt~~~~-~~g~~-~~~~~g~-~~~~l~ 62 (70)
..|.+++++++++ +.++.|+.+.. .+.. ..| ++.++||++++ ++|.. ...+.|. +.+++.
T Consensus 68 e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~ 146 (153)
T TIGR02738 68 FAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELA 146 (153)
T ss_pred HHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHH
Confidence 4799999999984 44544554431 2333 345 88999999999 45664 5578999 999999
Q ss_pred HHHHhhc
Q psy11066 63 STVLANR 69 (70)
Q Consensus 63 ~~i~~~~ 69 (70)
+.|++.+
T Consensus 147 ~~I~~ll 153 (153)
T TIGR02738 147 NRMDEIL 153 (153)
T ss_pred HHHHHhC
Confidence 9988764
No 83
>KOG0190|consensus
Probab=98.62 E-value=6.9e-08 Score=60.42 Aligned_cols=67 Identities=19% Similarity=0.404 Sum_probs=54.5
Q ss_pred CchHHHHHHHhhCCC---cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCe--EEeeeeCC-CHHHHHHHHHhhc
Q psy11066 1 MSLVMLQELASEFPD---VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTA--KVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~---i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
++.|+|+++++.+.+ +.++++|.+.|+ .....+.+.||+.+|+.|. ....+.|. +.++|..++.+..
T Consensus 401 ~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 401 ALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred hhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCC
Confidence 478999999998853 999999999887 3445677799999998775 35667788 8999999987653
No 84
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.59 E-value=8.8e-07 Score=46.99 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=54.7
Q ss_pred hHHHHHHHhhCCC--cEEEEEeCcCcHHHHHHcCCC--ccCEEEEEeCCeEEee-eeCC-CHHHHHHHHHhhc
Q psy11066 3 LVMLQELASEFPD--VVFLKVDVDESEDIAMAYDIS--SMPTFVFVKSTAKVEQ-FSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 3 ~p~~~~~~~~~~~--i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g~~~~~-~~g~-~~~~l~~~i~~~~ 69 (70)
...+.+++++|.+ +.|+.+|.++.+.+.+.||+. .+|+++++...+.... +.|. +.+.|.+|+..++
T Consensus 43 ~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 43 LEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 4678889999864 899999999999999999995 4999999965332333 6687 9999999998765
No 85
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.58 E-value=1.3e-06 Score=48.59 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 29 IAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
++..|++.++|+.+++ ++|+.+.++.|. +.+.++++|+.++
T Consensus 134 ~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 134 LGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred HHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 4558899999987777 699999999999 9999888887654
No 86
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.57 E-value=6.4e-07 Score=46.18 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=45.6
Q ss_pred cEEEEEeCc--CcHHHHHHcCCCccCEEEEEe--CCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 16 VVFLKVDVD--ESEDIAMAYDISSMPTFVFVK--STAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 16 i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..+..+|.+ +...++..|++.++|+++++. +|+.+.+..|. +.+++.+.|+++.
T Consensus 53 ~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 53 FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 566667765 567889999999999999994 69999999999 9999998887753
No 87
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.54 E-value=7.5e-07 Score=46.45 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=43.3
Q ss_pred chHHHHHHHhhCCCcEEEEEe-----------------------CcCcHHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-
Q psy11066 2 SLVMLQELASEFPDVVFLKVD-----------------------VDESEDIAMAYDISSMPTFVFV-KSTAKVEQFSGA- 56 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd-----------------------~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~- 56 (70)
+.|.++++.+++ ++.++.|+ .|....+++.|++.++|+.+++ ++|+.+.++.|.
T Consensus 43 ~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 43 EHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred HHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccC
Confidence 356777777666 35555444 3455678889999999976666 799999999998
Q ss_pred CHHHH
Q psy11066 57 NFDKL 61 (70)
Q Consensus 57 ~~~~l 61 (70)
+.+.|
T Consensus 122 ~~~~~ 126 (127)
T cd03010 122 TPEVW 126 (127)
T ss_pred ChHhc
Confidence 76654
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.52 E-value=1.2e-06 Score=59.13 Aligned_cols=68 Identities=26% Similarity=0.287 Sum_probs=55.4
Q ss_pred chHHHHHHHhhCCC--cEEEEEeC---------------------------cCcHHHHHHcCCCccCEEEEE-eCCeEEe
Q psy11066 2 SLVMLQELASEFPD--VVFLKVDV---------------------------DESEDIAMAYDISSMPTFVFV-KSTAKVE 51 (70)
Q Consensus 2 ~~p~~~~~~~~~~~--i~~~~vd~---------------------------~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~ 51 (70)
..|.|+++.++|++ +.++.|.. |....++++|++.++||++++ ++|+.+.
T Consensus 438 e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~ 517 (1057)
T PLN02919 438 VLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIA 517 (1057)
T ss_pred HhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEEECCCCeEEE
Confidence 46999999999864 66766632 223457789999999999999 7999999
Q ss_pred eeeCC-CHHHHHHHHHhhc
Q psy11066 52 QFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 52 ~~~g~-~~~~l~~~i~~~~ 69 (70)
++.|. ..+.|.++|++.+
T Consensus 518 ~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 518 QLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred EEecccCHHHHHHHHHHHH
Confidence 99999 8999999988764
No 89
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.49 E-value=5.1e-07 Score=49.67 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=39.0
Q ss_pred cCcHHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 24 DESEDIAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
|....+++.|++.++|+.+++ ++|+.+.++.|. +.+++.+++.+++
T Consensus 124 D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 124 DPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 444567789999999977666 799999999999 9999999998875
No 90
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.48 E-value=3.6e-06 Score=40.68 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=42.6
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeC-C-CHHHHHHHHH
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG-A-NFDKLRSTVL 66 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~i~ 66 (70)
...++++...++ +.+-.+|..+.+++ .+|++.++||+++ ||+. .+.| . +.++|.++|+
T Consensus 17 ~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 17 VQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 445677777774 77777778777777 9999999999953 7763 4677 5 7889998875
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.42 E-value=2.1e-07 Score=48.45 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=42.8
Q ss_pred chHHHHHHHhhCC-CcEEEEEeCcCcH-HHHHHcCCCc--cCEEEEEe-CCeEEee---eeCC-CHHHHHHHHH
Q psy11066 2 SLVMLQELASEFP-DVVFLKVDVDESE-DIAMAYDISS--MPTFVFVK-STAKVEQ---FSGA-NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~~~~~~~~~-~i~~~~vd~~~~~-~~~~~~~i~~--~Pt~~~~~-~g~~~~~---~~g~-~~~~l~~~i~ 66 (70)
|.|.+.+...... +..|+.+|.+..+ ...+.|++.+ +||++++. +|+++.+ ..|. +.+.+.+.|+
T Consensus 37 ~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~ 110 (117)
T cd02959 37 LKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAA 110 (117)
T ss_pred HHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHH
Confidence 5677777655432 2456666666543 4567899987 99999994 9998774 4455 5555554444
No 92
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.41 E-value=1.1e-05 Score=44.19 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=51.9
Q ss_pred hHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCC--ccCEEEEEe--CCeEEeeeeCC-CHHHHHHHHH
Q psy11066 3 LVMLQELASEFPD-VVFLKVDVDESEDIAMAYDIS--SMPTFVFVK--STAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 3 ~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
...+.++++++.+ +.|+.+|++..+.+.+.+++. .+|+++++. +++.-....|. +.+.|.+|+.
T Consensus 114 ~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 114 KKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp HHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 3567888888877 999999999999999999998 999999997 34432333677 9999999986
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.39 E-value=3.1e-06 Score=42.41 Aligned_cols=53 Identities=26% Similarity=0.492 Sum_probs=44.5
Q ss_pred hHHHHHHHhhC--CCcEEEEEeCcCc-----------------------HHHHHHcCCCccCEEEEE-eCCeEEeeeeC
Q psy11066 3 LVMLQELASEF--PDVVFLKVDVDES-----------------------EDIAMAYDISSMPTFVFV-KSTAKVEQFSG 55 (70)
Q Consensus 3 ~p~~~~~~~~~--~~i~~~~vd~~~~-----------------------~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g 55 (70)
.+.+.++.+++ +++.++.++.+.. ..+.+.|++.++|+++++ ++|+.+.++.|
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 38 MPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred hHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 46778888888 4589999998875 778999999999999999 58988888766
No 94
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.2e-06 Score=46.89 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=35.3
Q ss_pred HHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
.++++.|++++.||+++| ++|+.+....|+ +.+++...++
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 589999999999999999 688999999999 9888765543
No 95
>KOG0191|consensus
Probab=98.33 E-value=2.7e-06 Score=51.93 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=58.5
Q ss_pred chHHHHHHHhhCC--C-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeE-EeeeeCC-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFP--D-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK-VEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~--~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~ 68 (70)
|.|.+++++..+. . +.++.+|++....+++.+++.+.||+.+|++|.. .....|. +.+.|.+|+...
T Consensus 180 l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 180 LAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred cChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhh
Confidence 5689999998773 3 9999999998899999999999999999998888 7777788 899999998754
No 96
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.31 E-value=6.3e-06 Score=42.58 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=34.2
Q ss_pred cCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHH
Q psy11066 24 DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRST 64 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 64 (70)
+.+..+++.|++.++||++++.+|..+.++.|. +.+.|.+.
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 455679999999999999999654488899999 88888764
No 97
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.26 E-value=9.4e-06 Score=41.96 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=54.3
Q ss_pred hHHHHHHHhh---CCC-cEEEEEeCcCcHHHHHHcCCCc--cCEEEEEeCCe-EEee-eeCC-CHHHHHHHHHhhc
Q psy11066 3 LVMLQELASE---FPD-VVFLKVDVDESEDIAMAYDISS--MPTFVFVKSTA-KVEQ-FSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 3 ~p~~~~~~~~---~~~-i~~~~vd~~~~~~~~~~~~i~~--~Pt~~~~~~g~-~~~~-~~g~-~~~~l~~~i~~~~ 69 (70)
.+.+.+++++ +.+ +.|+.+|.++.....+.||+.. +|.+.+..... .... ..+. +.+.|.+|+...+
T Consensus 33 ~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 33 KEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 4678889999 877 9999999999888999999997 99999985432 2333 4566 8999999998765
No 98
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.24 E-value=3e-05 Score=43.37 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=50.6
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCc-------------HHHHHHcCC--CccCEEEEE-eCCeEE-eeeeCC-CHHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDES-------------EDIAMAYDI--SSMPTFVFV-KSTAKV-EQFSGA-NFDKLRS 63 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i--~~~Pt~~~~-~~g~~~-~~~~g~-~~~~l~~ 63 (70)
..|.+.+++++++ +.++-|+.++. ..+...|++ .++||.+++ ++|+.+ ..+.|. +.+++.+
T Consensus 87 e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~ 165 (181)
T PRK13728 87 FDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMA 165 (181)
T ss_pred HHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHH
Confidence 4688999999985 55555554422 236678885 699999999 688875 579999 9999988
Q ss_pred HHHhhc
Q psy11066 64 TVLANR 69 (70)
Q Consensus 64 ~i~~~~ 69 (70)
.+++.+
T Consensus 166 ~I~~ll 171 (181)
T PRK13728 166 RMDTVL 171 (181)
T ss_pred HHHHHH
Confidence 887764
No 99
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.23 E-value=4.5e-06 Score=44.28 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=40.6
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcCcHHHHHHc---CCCccCEEEEE-eCCeEEeeeeCCCHHHHHHHHH
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDESEDIAMAY---DISSMPTFVFV-KSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
-|++.++++..+++.+-.+..|++.++.++| +..++||++++ ++|+++.++.. .++.+.+++.
T Consensus 60 vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge-rP~~~~~~~~ 126 (129)
T PF14595_consen 60 VPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE-RPKEVQELVD 126 (129)
T ss_dssp HHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES-S-HHHH----
T ss_pred HHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC-CCHHHhhccc
Confidence 4899999999988887777778777776654 68899999999 56788888865 4444444443
No 100
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.21 E-value=1.8e-05 Score=48.03 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=45.9
Q ss_pred CCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 14 ~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
.++.|+.||..+...+++++|+...+++.+|++|+.+.-. |. +++.|.+||...+
T Consensus 89 ~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~ 144 (383)
T PF01216_consen 89 KGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLL 144 (383)
T ss_dssp CTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHH
T ss_pred cCcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEec-CccCHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999777655 98 9999999997653
No 101
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.20 E-value=1.1e-05 Score=42.55 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCcEEEEEeCcCcHHHHHH--------cCCCccCEEEEE-eCCeEEeeeeCC
Q psy11066 14 PDVVFLKVDVDESEDIAMA--------YDISSMPTFVFV-KSTAKVEQFSGA 56 (70)
Q Consensus 14 ~~i~~~~vd~~~~~~~~~~--------~~i~~~Pt~~~~-~~g~~~~~~~g~ 56 (70)
.+..++++|.++.+++++. |++.++||++++ .+|+++.+..+.
T Consensus 49 ~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 49 ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeeeec
Confidence 3578889999988877653 589999999999 689998776654
No 102
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.16 E-value=2.2e-05 Score=36.77 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=36.3
Q ss_pred CcEEEEEeCcCcHH----HHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 15 DVVFLKVDVDESED----IAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 15 ~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
++.+..+|.++++. +.+.+++.++|++++. |+. +.|.+.+.|.++|+
T Consensus 24 ~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 24 GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQLLE 74 (74)
T ss_pred CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHHHhC
Confidence 58888899887654 4567999999999874 643 77888888888763
No 103
>KOG1731|consensus
Probab=98.08 E-value=1.2e-05 Score=51.26 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=47.7
Q ss_pred CchHHHHHHHhhC---CC-cEEEEEeCc--CcHHHHHHcCCCccCEEEEEeCCeEE----eeeeCC-CHHHHHHHHHh
Q psy11066 1 MSLVMLQELASEF---PD-VVFLKVDVD--ESEDIAMAYDISSMPTFVFVKSTAKV----EQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 1 ~~~p~~~~~~~~~---~~-i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~----~~~~g~-~~~~l~~~i~~ 67 (70)
+++|.|.++++.. .. +.+..|||- +|..+|.+|+|++.||+.+|..+..- ..+.|. ...++.+.+.+
T Consensus 74 ~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 74 AFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred hcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHH
Confidence 3689999999865 34 778899985 57889999999999999999644222 344454 44555554443
No 104
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.03 E-value=5.8e-05 Score=39.07 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=51.1
Q ss_pred chHHHHHHHhhCC-C-cEEEEEeCcCcHHHHHHcCCCc----cCEEEEEeCCeEEeeeeC-C-CHHHHHHHHHhh
Q psy11066 2 SLVMLQELASEFP-D-VVFLKVDVDESEDIAMAYDISS----MPTFVFVKSTAKVEQFSG-A-NFDKLRSTVLAN 68 (70)
Q Consensus 2 ~~p~~~~~~~~~~-~-i~~~~vd~~~~~~~~~~~~i~~----~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~i~~~ 68 (70)
+.+.+.+++++++ + +.|+.+|.++.....+.||+.. +|++.++..........+ . +.+.|.+|+...
T Consensus 36 ~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 36 WRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 3567889999998 5 9999999999888999999984 999999863222222222 3 668899998765
No 105
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.02 E-value=3.8e-05 Score=49.11 Aligned_cols=60 Identities=20% Similarity=0.368 Sum_probs=50.7
Q ss_pred HhhCCCcEEEEEeCcCcH----HHHHHcCCCccCEEEEEe-CCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 10 ASEFPDVVFLKVDVDESE----DIAMAYDISSMPTFVFVK-STAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 10 ~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..+..+++..++|.++++ ++-++|++-++|++++|. +|++.....|. +++.+.+++++..
T Consensus 503 ~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 503 QQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred HHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 345567999999988753 567899999999999996 88888789999 9999999998764
No 106
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.01 E-value=9e-05 Score=42.39 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=47.2
Q ss_pred chHHHHHHHhhCCCcEEEEEeCc-----------CcHHHHHHcCCCccCEEEEEe-CC-eEEeeeeCC-CHHHHHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVD-----------ESEDIAMAYDISSMPTFVFVK-ST-AKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i~~~Pt~~~~~-~g-~~~~~~~g~-~~~~l~~~i 65 (70)
+.|++..++++| ++.+..|+.| .+..++++++|..+|++++.. ++ +...--.|. +.++|.+-|
T Consensus 138 ~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 138 QAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred HHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 579999999999 5555555554 357789999999999999995 34 344445688 888887644
No 107
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.01 E-value=3.2e-05 Score=40.51 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=35.3
Q ss_pred chHHHHHHHhhC----CCcEEEEEeCcCc------------------------HHHHHHcCCCccCEEEEEe-CCeEEee
Q psy11066 2 SLVMLQELASEF----PDVVFLKVDVDES------------------------EDIAMAYDISSMPTFVFVK-STAKVEQ 52 (70)
Q Consensus 2 ~~p~~~~~~~~~----~~i~~~~vd~~~~------------------------~~~~~~~~i~~~Pt~~~~~-~g~~~~~ 52 (70)
+.|.+.++.+++ .++.++.++.+.. ..+++.|++.++||++++. +|+.+.+
T Consensus 36 ~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 36 FTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcc
Confidence 356777666554 2456665655432 3577899999999999995 8876654
No 108
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.99 E-value=0.00012 Score=39.99 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=49.8
Q ss_pred hHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC-eEEeeeeCC--CHHHHHHHHHhh
Q psy11066 3 LVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKST-AKVEQFSGA--NFDKLRSTVLAN 68 (70)
Q Consensus 3 ~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~--~~~~l~~~i~~~ 68 (70)
...|.++++.+.+ +.|+.+. +.++++.+++.. |++++|+++ .....+.|. +.+.|..||...
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 3468888988874 8898887 567899999999 999999874 445677774 899999999865
No 109
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.95 E-value=9e-05 Score=47.32 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=47.8
Q ss_pred HHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 5 ~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
.+++++...+++..-.+|..+.++++++|+|.++|++++ ||+.+ +.|. +.+++.++|
T Consensus 497 ~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 497 AAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred HHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence 356667777789999999999999999999999999985 67655 4587 999998886
No 110
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.92 E-value=8.5e-05 Score=39.46 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=43.7
Q ss_pred hHHHHHHHhhCC--CcEEEEEeCc---------------------CcHHHHHHcCCC---------ccCEEEEE-eCCeE
Q psy11066 3 LVMLQELASEFP--DVVFLKVDVD---------------------ESEDIAMAYDIS---------SMPTFVFV-KSTAK 49 (70)
Q Consensus 3 ~p~~~~~~~~~~--~i~~~~vd~~---------------------~~~~~~~~~~i~---------~~Pt~~~~-~~g~~ 49 (70)
.|.+.++.+.+. ++.++.|..+ ....+++.|++. ++|+++++ ++|++
T Consensus 48 ~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 48 LPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred hhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEE
Confidence 356677766642 3666555543 335678899988 99998888 79999
Q ss_pred EeeeeCC-C--HHHHHHH
Q psy11066 50 VEQFSGA-N--FDKLRST 64 (70)
Q Consensus 50 ~~~~~g~-~--~~~l~~~ 64 (70)
+....|. + ..++.+.
T Consensus 128 ~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 128 VYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp EEEEESSBTTSHHSHHHH
T ss_pred EEEEeCCCCCCCCChhhc
Confidence 9999998 5 4455543
No 111
>smart00594 UAS UAS domain.
Probab=97.91 E-value=4.2e-05 Score=39.98 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=39.6
Q ss_pred CcEEEEEeCc--CcHHHHHHcCCCccCEEEEE-eCC-----eEEeeeeCC-CHHHHHHHH
Q psy11066 15 DVVFLKVDVD--ESEDIAMAYDISSMPTFVFV-KST-----AKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 15 ~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~-~~g-----~~~~~~~g~-~~~~l~~~i 65 (70)
+..+..+|.+ +...++..|++.++|+++++ .+| +.+.++.|. +.++|...+
T Consensus 62 ~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 62 NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 3555556654 45678999999999999999 455 357889999 989888765
No 112
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.90 E-value=0.00014 Score=46.01 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
..+++++...+++..-.+|..+.++++++|++.++|++++ ||+.+ +.|. +.+++.+.+.+
T Consensus 136 ~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 136 QALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred HHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhc
Confidence 3466777777889999999999999999999999999975 66543 5687 88888877754
No 113
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.89 E-value=8.7e-05 Score=39.04 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=35.3
Q ss_pred chHHHHHHHhhCC----CcEEEEEeCcCc-------------------------HHHHHHcCCCccCEEEEEe-CCeEEe
Q psy11066 2 SLVMLQELASEFP----DVVFLKVDVDES-------------------------EDIAMAYDISSMPTFVFVK-STAKVE 51 (70)
Q Consensus 2 ~~p~~~~~~~~~~----~i~~~~vd~~~~-------------------------~~~~~~~~i~~~Pt~~~~~-~g~~~~ 51 (70)
..|.+.++.+++. ++.++.++.+.. ..+++.|++.++||++++. +|+.+.
T Consensus 35 ~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 35 FTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEc
Confidence 3567777766543 466666665542 2456789999999999994 777664
Q ss_pred ee
Q psy11066 52 QF 53 (70)
Q Consensus 52 ~~ 53 (70)
+.
T Consensus 115 ~~ 116 (132)
T cd02964 115 TN 116 (132)
T ss_pred hh
Confidence 43
No 114
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.88 E-value=2.3e-05 Score=45.17 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=36.9
Q ss_pred EeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 21 VDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 21 vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
.+++++..+++++||+++||++ +.||+.+ .|+ +.+.|.++|++.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 4556778899999999999999 7789654 899 999999999864
No 115
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.86 E-value=0.00021 Score=37.24 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=40.3
Q ss_pred hHHHHHHHhhCCC--cEEEEEeC---------------------------cCcHHHHHHcCCCccCEEEEE-eCCeEEee
Q psy11066 3 LVMLQELASEFPD--VVFLKVDV---------------------------DESEDIAMAYDISSMPTFVFV-KSTAKVEQ 52 (70)
Q Consensus 3 ~p~~~~~~~~~~~--i~~~~vd~---------------------------~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~ 52 (70)
.|.++++.+++++ +.++.|+. |....++..|++.++|+.+++ ++|+.+.+
T Consensus 42 ~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 42 LPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred HHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 5677888888753 66666643 122456778999999999999 68999998
Q ss_pred eeCC
Q psy11066 53 FSGA 56 (70)
Q Consensus 53 ~~g~ 56 (70)
+.|.
T Consensus 122 ~~G~ 125 (126)
T cd03012 122 HFGE 125 (126)
T ss_pred EecC
Confidence 8874
No 116
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.85 E-value=0.00012 Score=36.25 Aligned_cols=46 Identities=33% Similarity=0.579 Sum_probs=33.4
Q ss_pred hHHHHHHHhhCC---CcEEEEEeCcCc-------------------------HHHHHHcCCCccCEEEEE-eCCe
Q psy11066 3 LVMLQELASEFP---DVVFLKVDVDES-------------------------EDIAMAYDISSMPTFVFV-KSTA 48 (70)
Q Consensus 3 ~p~~~~~~~~~~---~i~~~~vd~~~~-------------------------~~~~~~~~i~~~Pt~~~~-~~g~ 48 (70)
.|.+.++.++++ ++.++.|+.++. ..+.+.|++.++|+++++ ++|+
T Consensus 20 ~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 20 LPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 577788888777 488887777543 347889999999999999 4664
No 117
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.84 E-value=0.00041 Score=36.59 Aligned_cols=64 Identities=22% Similarity=0.404 Sum_probs=44.3
Q ss_pred HHHHHH-hh---CCCcEEEEEeCc-----CcHHHHHHcCC--CccCEEEEEeC-CeEEeee--eCC-CHHHHHHHHHhh
Q psy11066 5 MLQELA-SE---FPDVVFLKVDVD-----ESEDIAMAYDI--SSMPTFVFVKS-TAKVEQF--SGA-NFDKLRSTVLAN 68 (70)
Q Consensus 5 ~~~~~~-~~---~~~i~~~~vd~~-----~~~~~~~~~~i--~~~Pt~~~~~~-g~~~~~~--~g~-~~~~l~~~i~~~ 68 (70)
.|.+++ +. -.++-++.|.+. +|.+++++|++ ...|.+.+|.. ...-.++ .|. +.+.|+.|++++
T Consensus 40 ~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 40 AFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp HHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 455566 32 245888888764 47899999999 57899999974 4455555 777 999999999875
No 118
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.82 E-value=0.00036 Score=40.97 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=49.2
Q ss_pred CchHHHHHHHhhCCCcEEEEEeCcCc-----------HHHHHHcCCCccCEEEEEe-C-CeEEeeeeCC-CHHHHHHHHH
Q psy11066 1 MSLVMLQELASEFPDVVFLKVDVDES-----------EDIAMAYDISSMPTFVFVK-S-TAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~i~~~~vd~~~~-----------~~~~~~~~i~~~Pt~~~~~-~-g~~~~~~~g~-~~~~l~~~i~ 66 (70)
++.|++..++++|+ +.+.-|+.|.. ...++++++..+|++++.. + ++..---.|. +.++|.+-|.
T Consensus 167 ~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~ 245 (256)
T TIGR02739 167 KMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERIL 245 (256)
T ss_pred HHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHH
Confidence 36899999999996 55555544432 4578999999999999884 4 3334445688 9999988776
Q ss_pred hhc
Q psy11066 67 ANR 69 (70)
Q Consensus 67 ~~~ 69 (70)
..+
T Consensus 246 ~v~ 248 (256)
T TIGR02739 246 NVL 248 (256)
T ss_pred HHH
Confidence 543
No 119
>KOG0913|consensus
Probab=97.82 E-value=2.1e-05 Score=45.42 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=54.5
Q ss_pred chHHHHHHHhhCCC--cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 2 SLVMLQELASEFPD--VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~~~~~~~~~~--i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+.|.++..+.--.+ +.+++||++.++.+.-+|-+.++||+.-.++| +..++.|. +..++.+++.
T Consensus 57 ~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG-eFrrysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 57 LIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG-EFRRYSGARDKNDFISFEE 123 (248)
T ss_pred hHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc-ccccccCcccchhHHHHHH
Confidence 35667777665434 99999999999999999999999999999999 67788999 8889988875
No 120
>KOG3414|consensus
Probab=97.81 E-value=0.00031 Score=37.29 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=49.7
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeE--Ee-------eeeCC--CHHHHHHHHH
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK--VE-------QFSGA--NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~--~~-------~~~g~--~~~~l~~~i~ 66 (70)
|...+.++++...+ ..+.-+|.++.+++-+-|++...||+++|-+++- ++ .+.++ +.+++.+.++
T Consensus 41 mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 41 MDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred HHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 56678888888888 8888999999999999999999999999966653 32 23333 4556666654
No 121
>KOG0911|consensus
Probab=97.78 E-value=3.1e-05 Score=44.38 Aligned_cols=60 Identities=30% Similarity=0.442 Sum_probs=51.8
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHH
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKL 61 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l 61 (70)
|.-+++.+++...++.+++.+.++.++++..+.+.++|+++++..|+.+.+..|.....+
T Consensus 35 ~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 35 MDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred HHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 455677778777779999999999999999999999999999999999999999843333
No 122
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.74 E-value=0.0003 Score=31.06 Aligned_cols=45 Identities=33% Similarity=0.416 Sum_probs=34.3
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcCcHHHHH---HcCCCccCEEEEEeCC
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDESEDIAM---AYDISSMPTFVFVKST 47 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g 47 (70)
.+.+.++....+++.+..++++...+... .+++.++|+++++.+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 16 RPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred hhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 45566653344569999999988776554 8999999999999876
No 123
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.74 E-value=0.00042 Score=38.91 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=32.9
Q ss_pred CcHHHHHHcCCCccCEE-EEE-eCCeEEeeeeCC-CHHHHHHHH
Q psy11066 25 ESEDIAMAYDISSMPTF-VFV-KSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 25 ~~~~~~~~~~i~~~Pt~-~~~-~~g~~~~~~~g~-~~~~l~~~i 65 (70)
....++..|++.++|+. +++ ++|+.+.++.|. +.+++.+.+
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 34567789999999887 566 799999999999 887775543
No 124
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.65 E-value=0.00057 Score=43.34 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=47.2
Q ss_pred HHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 5 ~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
.+++++..++++..-.+|..+.++++++|++.++|++++ ||+.+ +.|. +.+++.+.+.+
T Consensus 138 ~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 138 ALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEKLEE 197 (515)
T ss_pred HHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHHHhh
Confidence 356667777889999999999999999999999999975 56533 5677 88887776654
No 125
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.63 E-value=4e-05 Score=42.94 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=35.2
Q ss_pred EEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 18 FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 18 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
....+.+++..++++++|+++||++ +++|+. +.|. +.+.|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 4445666788999999999999997 888865 5788 888887764
No 126
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.59 E-value=0.00046 Score=34.04 Aligned_cols=64 Identities=30% Similarity=0.538 Sum_probs=51.2
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCc-CcHHHHHHcC--CCccCEEEEEeCCeEEeeeeC--C-CHHHHHHHH
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVD-ESEDIAMAYD--ISSMPTFVFVKSTAKVEQFSG--A-NFDKLRSTV 65 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~i 65 (70)
+.|.+.++++.+.. +.+..+|.. ..++....|+ +..+|+++++.+|..+....+ . ....+....
T Consensus 50 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (127)
T COG0526 50 EAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDAL 120 (127)
T ss_pred hchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccCCHHHHHHHh
Confidence 46889999999985 999999997 7899999999 999999999988877666665 3 555554443
No 127
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.58 E-value=0.00052 Score=35.78 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=42.1
Q ss_pred CcEEEEEeCc--CcHHHHHHcCCCccCEEEEE--eC--CeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 15 DVVFLKVDVD--ESEDIAMAYDISSMPTFVFV--KS--TAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 15 ~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~--~~--g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+..+...|++ +...++..++++++|+++++ ++ .+++.++.|. +.++|...|...
T Consensus 52 ~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 52 RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 3556666665 34678999999999999998 23 3468999999 999999888765
No 128
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.55 E-value=0.0018 Score=35.43 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=46.0
Q ss_pred hHHHHHHHhhCC--CcEEEEEeCcC-----------------------------cHHHHHHcCCCccCEEEEE-eCCeEE
Q psy11066 3 LVMLQELASEFP--DVVFLKVDVDE-----------------------------SEDIAMAYDISSMPTFVFV-KSTAKV 50 (70)
Q Consensus 3 ~p~~~~~~~~~~--~i~~~~vd~~~-----------------------------~~~~~~~~~i~~~Pt~~~~-~~g~~~ 50 (70)
.|.+.++.+++. ++.++.+..+. ...+++.|++..+|+++++ ++|+.+
T Consensus 44 ~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~ 123 (171)
T cd02969 44 EDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLV 123 (171)
T ss_pred HHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEE
Confidence 466777777775 37777776542 2345778999999999999 588876
Q ss_pred eee------e---CC-CHHHHHHHHHhhc
Q psy11066 51 EQF------S---GA-NFDKLRSTVLANR 69 (70)
Q Consensus 51 ~~~------~---g~-~~~~l~~~i~~~~ 69 (70)
.+. . +. +...+.+.|...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 124 YRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred EeecccCCcccccccccHHHHHHHHHHHH
Confidence 542 1 22 4567888777654
No 129
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.53 E-value=0.0017 Score=37.73 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=28.9
Q ss_pred ccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 37 SMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 37 ~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..||.+++ ++|+.+.++.|. +.++|+..|++++
T Consensus 200 ~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 200 WNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred cCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 35888888 799999999999 9999999998876
No 130
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.40 E-value=0.0017 Score=32.18 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC-eEEeeeeCC-CHHHHHHHHHh
Q psy11066 4 VMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKST-AKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 4 p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~l~~~i~~ 67 (70)
..|.++++.+.+ +.|+.+. +.+++..+++. .|++++|+.. .....+.|. +.+.|.+||..
T Consensus 34 ~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 34 KTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred HHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 467778888854 8887665 35667777765 5999999764 455668887 88999999874
No 131
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.38 E-value=0.0021 Score=37.66 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=49.2
Q ss_pred CchHHHHHHHhhCCC-cEEEEEeCcC---------cHHHHHHcCCCccCEEEEEe-C-CeEEeeeeCC-CHHHHHHHHHh
Q psy11066 1 MSLVMLQELASEFPD-VVFLKVDVDE---------SEDIAMAYDISSMPTFVFVK-S-TAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 1 ~~~p~~~~~~~~~~~-i~~~~vd~~~---------~~~~~~~~~i~~~Pt~~~~~-~-g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
++.|++..++++|+= +..+.+|..- +...++++++..+|++++.. + ++..---.|. +.++|.+-|..
T Consensus 160 ~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 160 QLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHH
Confidence 368999999999963 5555555422 23357899999999999994 3 3444455688 99999887765
Q ss_pred hc
Q psy11066 68 NR 69 (70)
Q Consensus 68 ~~ 69 (70)
.+
T Consensus 240 v~ 241 (248)
T PRK13703 240 VS 241 (248)
T ss_pred HH
Confidence 43
No 132
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.37 E-value=0.0019 Score=41.45 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=51.0
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEe-CCeE-EeeeeCC-CHHHHHHHHHhhc
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVK-STAK-VEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~-~g~~-~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..+++++..-+.+.+...|..++.+++++|++...|++.+++ +|+. -.+|.|. .-.++.++|..++
T Consensus 386 ~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 386 SFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred HHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHH
Confidence 345666654455888888988889999999999999999994 6643 4788898 7777888876543
No 133
>KOG3171|consensus
Probab=97.33 E-value=0.00036 Score=40.21 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeee------CC--CHHHHHHHHHhh
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFS------GA--NFDKLRSTVLAN 68 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~------g~--~~~~l~~~i~~~ 68 (70)
...+.=++.+||-++|.++-... -....+|...++||+.+|++|+.+.-++ |. -..++.+||..+
T Consensus 178 n~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 178 NSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred hhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 34456678889989999987663 4557899999999999999998875444 32 345677777643
No 134
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.30 E-value=0.0022 Score=33.63 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=32.5
Q ss_pred CcHHHHHHcCCCcc---------CEEEEE-eCCeEEeeeeCC-CHHHHHHHH
Q psy11066 25 ESEDIAMAYDISSM---------PTFVFV-KSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 25 ~~~~~~~~~~i~~~---------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i 65 (70)
....+++.|++... |+.+++ ++|+.+..+.|. ....+.+.+
T Consensus 88 ~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 88 PDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred CccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 33567889999988 898888 589999999998 666666544
No 135
>KOG3170|consensus
Probab=97.30 E-value=0.00089 Score=38.24 Aligned_cols=63 Identities=24% Similarity=0.397 Sum_probs=46.7
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeC------C--CHHHHHHHHHh
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG------A--NFDKLRSTVLA 67 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g------~--~~~~l~~~i~~ 67 (70)
+...++.++.+|+.++|+++-.+.| ..-|--..+||+++|..|.....+.| . +.+++..++.+
T Consensus 129 l~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 129 LSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred HHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 3467899999999999999865544 22355679999999999987766665 3 45677776654
No 136
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=97.28 E-value=0.0011 Score=35.40 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=32.3
Q ss_pred cHHHHHHcCCCccCEEEEEeCCe-----------EEeeeeCC-CHHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTA-----------KVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~-----------~~~~~~g~-~~~~l~~~i~ 66 (70)
++.+.++|+|+.+|++++.+++. .-....|. +.+...+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 58889999999999999998774 35677787 7666555554
No 137
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.24 E-value=0.0012 Score=35.40 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=29.0
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
...+.+++|.++||+++ ||+. +.|. +.++|.++|++
T Consensus 126 ~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred HHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 35678899999999997 8976 4777 99999999875
No 138
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.20 E-value=0.0063 Score=34.02 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=31.5
Q ss_pred cHHHHHHcCCCccCEEEEE-eCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 26 SEDIAMAYDISSMPTFVFV-KSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
..++++.|++.++|+.+++ ++|+.+.+....+.+.++++++..
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 3567889999999998887 688877653222667788877643
No 139
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.20 E-value=0.0041 Score=35.16 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=24.4
Q ss_pred EEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 40 TFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 40 t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.+++ ++|+.+.++.|. +.+.+.+.|++.+
T Consensus 147 ~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred EEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555 899999999998 8888888887765
No 140
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.20 E-value=0.0039 Score=32.12 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHhhCCC-cEEEEEeCcCcHH----HHHHcCCC-ccCEEEEEeCCeEEeeeeCC--CHHHH
Q psy11066 5 MLQELASEFPD-VVFLKVDVDESED----IAMAYDIS-SMPTFVFVKSTAKVEQFSGA--NFDKL 61 (70)
Q Consensus 5 ~~~~~~~~~~~-i~~~~vd~~~~~~----~~~~~~i~-~~Pt~~~~~~g~~~~~~~g~--~~~~l 61 (70)
.|++.....++ +.++.+|+-+.++ ++++|||. --|.+++++||+.++.-.-. +.+.|
T Consensus 40 ~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 40 EFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp HHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred HHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECccccCCHHhc
Confidence 35555555555 9999999988655 57899998 78999999999998765533 55554
No 141
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.17 E-value=0.00069 Score=39.59 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=32.9
Q ss_pred cHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+..+++++|+++.||+++-.+...+..+.|+ +.++|.+++.
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 4568899999999999988532355678899 8999998875
No 142
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.17 E-value=0.0013 Score=36.22 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=30.0
Q ss_pred cHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+...+.++|+.++||+++ +|+ ..+.|. +.+.|.+.|+
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 345678999999999998 776 778899 8888887763
No 143
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.09 E-value=0.0011 Score=31.35 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=31.2
Q ss_pred CcEEEEEeCcCcHHHHHH-----cCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHH
Q psy11066 15 DVVFLKVDVDESEDIAMA-----YDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 65 (70)
++.+-.+|+++.+..... ++..++|++ ++.+|+.+. ..+..++.+.|
T Consensus 24 ~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~~~l 75 (77)
T TIGR02200 24 GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVKAKL 75 (77)
T ss_pred CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHHHHh
Confidence 356667888877766655 389999997 577785543 33555555544
No 144
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.05 E-value=0.0061 Score=30.89 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=30.4
Q ss_pred chHHHHHHHhhCCC-cEEEEEe-C--cC-----------------cHHHHHHcCCCccCEEEEE-eCCeEEe
Q psy11066 2 SLVMLQELASEFPD-VVFLKVD-V--DE-----------------SEDIAMAYDISSMPTFVFV-KSTAKVE 51 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd-~--~~-----------------~~~~~~~~~i~~~Pt~~~~-~~g~~~~ 51 (70)
+.|.++++.+++.+ +.++.+. . ++ ..++.+.|++.++|+.+++ ++|+.+.
T Consensus 39 ~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~vid~~G~v~~ 110 (114)
T cd02967 39 LLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAVLLDEAGVIAA 110 (114)
T ss_pred HhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEEEECCCCeEEe
Confidence 35677777766643 5544441 1 11 1345677888888988888 4676554
No 145
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.01 E-value=0.0025 Score=36.87 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=30.8
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..+++.||+++|||++ .+| ..+.|. +.+.+.+.|.+.+
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHH
Confidence 4588999999999998 333 667898 9999998888764
No 146
>KOG2603|consensus
Probab=96.93 E-value=0.0032 Score=38.02 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=39.1
Q ss_pred cEEEEEeCcCcHHHHHHcCCCccCEEEEEeC--CeE--Eeeee----CCCHHHHHHHHHhh
Q psy11066 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKS--TAK--VEQFS----GANFDKLRSTVLAN 68 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~--g~~--~~~~~----g~~~~~l~~~i~~~ 68 (70)
+-|..||.++.+++.++++++++|++++|.. |.. -+.+. |...+++.+|++..
T Consensus 105 lFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 105 LFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred EEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 6799999999999999999999999999943 222 12222 22467777777653
No 147
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.93 E-value=0.0054 Score=33.27 Aligned_cols=25 Identities=12% Similarity=0.406 Sum_probs=20.9
Q ss_pred HHHHHcCCCccCEEEEE-eCCeEEee
Q psy11066 28 DIAMAYDISSMPTFVFV-KSTAKVEQ 52 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~-~~g~~~~~ 52 (70)
.++..|++.++||++++ ++|+.+.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 47789999999999999 58877755
No 148
>PLN02412 probable glutathione peroxidase
Probab=96.87 E-value=0.0037 Score=34.31 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=29.8
Q ss_pred CCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 35 ISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 35 i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+.+.||.+++ ++|+.+.++.|. +.+++...|.+++
T Consensus 128 v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 128 IKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred cCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4456898888 799999999999 9999999988765
No 149
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.84 E-value=0.017 Score=30.95 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=29.7
Q ss_pred CcHHHHHHcCCCcc------------CEEEEE-eCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 25 ESEDIAMAYDISSM------------PTFVFV-KSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 25 ~~~~~~~~~~i~~~------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
....+++.|++... |+.+++ ++|+.+..+.|. ..+.+...++
T Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 34567888988754 666777 699999999998 5555444443
No 150
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.81 E-value=0.011 Score=28.75 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=36.9
Q ss_pred cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC--eEEeeeeCC-CHHHHHHHHH
Q psy11066 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKST--AKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g--~~~~~~~g~-~~~~l~~~i~ 66 (70)
+.+-.+|+++++.+..+|+. .+|.+.+-..+ .......+. +.+.|.++|+
T Consensus 29 ~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 29 FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 88999999999999999994 89997644211 113455566 9999998875
No 151
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.76 E-value=0.018 Score=28.00 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=38.8
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcCc----HHHHHHcC--CCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhhc
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDES----EDIAMAYD--ISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANR 69 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 69 (70)
...|+++..++.++.+..+|.++. .++...++ +.++|+++ .+|+.+ | ..++|.+++..++
T Consensus 18 ~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i----g-g~~~~~~~~~~~~ 83 (85)
T PRK11200 18 KELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI----G-GCTDFEAYVKENL 83 (85)
T ss_pred HHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE----c-CHHHHHHHHHHhc
Confidence 456667766666788888888764 34555554 48999976 477543 2 4456666666554
No 152
>KOG2501|consensus
Probab=96.75 E-value=0.0094 Score=32.77 Aligned_cols=25 Identities=16% Similarity=0.503 Sum_probs=20.7
Q ss_pred HHHHHHcCCCccCEEEEE-eCCeEEe
Q psy11066 27 EDIAMAYDISSMPTFVFV-KSTAKVE 51 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~-~~g~~~~ 51 (70)
++++++|+|.++|++++. .+|..+.
T Consensus 105 ~~l~~ky~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 105 QKLSEKYEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred HHHHHhcccCcCceeEEecCCCCEeh
Confidence 567889999999999988 5786654
No 153
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.75 E-value=0.011 Score=27.24 Aligned_cols=46 Identities=35% Similarity=0.499 Sum_probs=31.8
Q ss_pred CcEEEEEeCcCcHHHHHHc----CCCccCEEEEEeCCeEEeeeeCCCHHHHHHHH
Q psy11066 15 DVVFLKVDVDESEDIAMAY----DISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 65 (70)
++.+..+|.+...+..+.+ +..++|++++ +| ..+.|.+.+.|.+++
T Consensus 24 ~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~~~ 73 (73)
T cd02976 24 GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRALL 73 (73)
T ss_pred CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHhhC
Confidence 4777778887665554444 6889999975 45 466677777777653
No 154
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.73 E-value=0.0045 Score=32.70 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=27.5
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
...+.+++|.++||+++ +|+ .+.|. +.+.|.+.|+
T Consensus 119 ~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 119 RQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred HHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 45678999999999876 564 57888 8888887763
No 155
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.62 E-value=0.016 Score=31.16 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEE-eCCeEEeeeeCC-CHHHHHHH
Q psy11066 40 TFVFV-KSTAKVEQFSGA-NFDKLRST 64 (70)
Q Consensus 40 t~~~~-~~g~~~~~~~g~-~~~~l~~~ 64 (70)
|.+++ ++|+.+.++.|. +.+.|.+.
T Consensus 125 ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 125 TKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred EEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 56666 899999999999 88877654
No 156
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.56 E-value=0.006 Score=32.55 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.9
Q ss_pred CccCEEEEE-eCCeEEeeeeCC
Q psy11066 36 SSMPTFVFV-KSTAKVEQFSGA 56 (70)
Q Consensus 36 ~~~Pt~~~~-~~g~~~~~~~g~ 56 (70)
.++||++|+ .+|+++.++.|+
T Consensus 78 ~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 78 QYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred cccCeEEEECCCCCCccccccc
Confidence 689999999 689999999986
No 157
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=96.51 E-value=0.0089 Score=31.05 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.7
Q ss_pred CcHHHHHHcCCCccCEEEEEeC
Q psy11066 25 ESEDIAMAYDISSMPTFVFVKS 46 (70)
Q Consensus 25 ~~~~~~~~~~i~~~Pt~~~~~~ 46 (70)
=++.+.++|+|+.+||+++-++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3578899999999999999987
No 158
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.48 E-value=0.037 Score=29.66 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=37.5
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCE-EEEEeCCeEE
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPT-FVFVKSTAKV 50 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt-~~~~~~g~~~ 50 (70)
|..++.+++++.++ ..++.+|.++.+++-+.|.+. .|. +.+|-+++-+
T Consensus 38 mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 38 MDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEE
Confidence 55678888888888 889999999999999999999 776 5555566644
No 159
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.35 E-value=0.055 Score=28.52 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=42.0
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcC----------------------c-HHHHHHcCCCc------cCEEEEE-eCCeEEee
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDE----------------------S-EDIAMAYDISS------MPTFVFV-KSTAKVEQ 52 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~----------------------~-~~~~~~~~i~~------~Pt~~~~-~~g~~~~~ 52 (70)
.|.+.++.+++.++.++.|+.+. . ..++..|++.. .|+.+++ ++|+.+..
T Consensus 46 ~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 46 TKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred HHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 35667777777666666666542 1 34567788753 6888888 58999998
Q ss_pred eeCC---CHHHHHHHH
Q psy11066 53 FSGA---NFDKLRSTV 65 (70)
Q Consensus 53 ~~g~---~~~~l~~~i 65 (70)
..|. ....+.+.|
T Consensus 126 ~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 126 ELVPEITDEPDYEAAL 141 (143)
T ss_pred EECCCcccCCCHHHHh
Confidence 8875 344565544
No 160
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=96.34 E-value=0.0079 Score=33.46 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.7
Q ss_pred cHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+...+.+.||.++||+++ +|+. ...|. +.+.+.+.|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 345678899999999997 5643 36788 888888766
No 161
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.24 E-value=0.013 Score=30.88 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=26.7
Q ss_pred hHHHHHHHhhCC-CcEEEEEeCcCcH-------HHHH--HcCCCccCEEEEEeCCe
Q psy11066 3 LVMLQELASEFP-DVVFLKVDVDESE-------DIAM--AYDISSMPTFVFVKSTA 48 (70)
Q Consensus 3 ~p~~~~~~~~~~-~i~~~~vd~~~~~-------~~~~--~~~i~~~Pt~~~~~~g~ 48 (70)
.|++++.-...+ +..++.+.+...+ ..-+ ++++.++||++-+.+++
T Consensus 45 ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 45 EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGE 100 (119)
T ss_dssp HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-
T ss_pred HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCC
Confidence 477777766665 4888888764322 2233 59999999999997773
No 162
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.21 E-value=0.035 Score=26.13 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=32.0
Q ss_pred CcEEEEEeCcCcHHHHHHc---CCCccCEEEEEeCCeEEeeeeCCCHHHHHH
Q psy11066 15 DVVFLKVDVDESEDIAMAY---DISSMPTFVFVKSTAKVEQFSGANFDKLRS 63 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 63 (70)
++.+-.+|+++++...+.+ +..++|++++ +|. ..+.|++.+.|.+
T Consensus 23 ~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~ 70 (72)
T TIGR02194 23 GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA 70 (72)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence 5888888888777665554 8889999754 453 3566778877765
No 163
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.17 E-value=0.049 Score=27.46 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=40.1
Q ss_pred HHHHHHhhC-CCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeC-CeEEeee-eCC-CHHHHHHHHHhh
Q psy11066 5 MLQELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKS-TAKVEQF-SGA-NFDKLRSTVLAN 68 (70)
Q Consensus 5 ~~~~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~-g~~~~~~-~g~-~~~~l~~~i~~~ 68 (70)
.|.+++..+ .+..|+... ..+++..+++. .|+++++++ ......+ .|. +.+.|.+||...
T Consensus 37 ~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 37 AFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred HHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 566667766 347664322 33556777654 699999976 4444456 677 899999999764
No 164
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.08 E-value=0.023 Score=31.50 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=26.6
Q ss_pred cEEEEEeCcCcHHHHHHc--------CCCccCEEEEE-eCCeEEeee
Q psy11066 16 VVFLKVDVDESEDIAMAY--------DISSMPTFVFV-KSTAKVEQF 53 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~-~~g~~~~~~ 53 (70)
..-++||.++.+++...| +..++|+.++. .+|+++...
T Consensus 73 FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 73 FIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp -EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred EEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeee
Confidence 556789999999998888 78899999999 688887653
No 165
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.00 E-value=0.015 Score=31.66 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=21.5
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
...+.+++|.++||+++ ||+.+..-.+.
T Consensus 133 ~~~~~~~gi~gTPt~iI--nG~~~~~~~~~ 160 (178)
T cd03019 133 EKLAKKYKITGVPAFVV--NGKYVVNPSAI 160 (178)
T ss_pred HHHHHHcCCCCCCeEEE--CCEEEEChhhc
Confidence 45678999999999997 78766555444
No 166
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=95.99 E-value=0.015 Score=32.01 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=25.8
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
...+.++||.++||+++ +|+ .+.|. +.+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 34577899999999997 674 55688 777776654
No 167
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.96 E-value=0.0068 Score=33.67 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=16.2
Q ss_pred cHHHHHHcCCCccCEEEEEe--CCeEEeeeeCC-CHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVK--STAKVEQFSGA-NFDKL 61 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~-~~~~l 61 (70)
...++.+++|++.||++++. ++..-..+.|. +.+.+
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE--------------------
T ss_pred HHHHHHHcCCCCCCEEEEEeccccccccccccccccccc
Confidence 45689999999999999997 33344555666 55443
No 168
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.80 E-value=0.015 Score=28.01 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHhhC-CC-cEEEEEeCcCcHHHHHHcCCCccCEEE
Q psy11066 8 ELASEF-PD-VVFLKVDVDESEDIAMAYDISSMPTFV 42 (70)
Q Consensus 8 ~~~~~~-~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~ 42 (70)
++.+++ ++ ..+-.+|..+.+++++.++|-++||++
T Consensus 24 ~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 24 RILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred HHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 333444 33 888899999999999999999999976
No 169
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=95.70 E-value=0.038 Score=31.72 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=29.7
Q ss_pred cHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
++.+.++|+|+.+|++++. .+..-+.+.|- +...-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~-C~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVF-CSQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEE-cCCCCCEEEecccHHHHHHHHH
Confidence 5788999999999999997 34455778887 7655444443
No 170
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.036 Score=31.69 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeC--C-CHHHHHHHHHhhc
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSG--A-NFDKLRSTVLANR 69 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~i~~~~ 69 (70)
..+++++++.++||+.+-+||+.-.--.| + +.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 45788999999999999999986555555 4 7778887776543
No 171
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.65 E-value=0.078 Score=29.07 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=31.7
Q ss_pred cCcHHHHHHcCCC------ccCEEEEE-eCCeEEeeeeCC-----CHHHHHHHHHhh
Q psy11066 24 DESEDIAMAYDIS------SMPTFVFV-KSTAKVEQFSGA-----NFDKLRSTVLAN 68 (70)
Q Consensus 24 ~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~ 68 (70)
|....+++.|++. .+|+.+++ ++|+.+..+.+. +.+++.+.|++.
T Consensus 100 D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 100 DPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred CCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 3445677888986 67898888 589888888653 345676666543
No 172
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.54 E-value=0.18 Score=27.65 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=23.2
Q ss_pred HHHHHHcCCCccC---------EEEEE-eCCeEEeeeeC
Q psy11066 27 EDIAMAYDISSMP---------TFVFV-KSTAKVEQFSG 55 (70)
Q Consensus 27 ~~~~~~~~i~~~P---------t~~~~-~~g~~~~~~~g 55 (70)
..+++.|++...| +.+++ ++|+.+..+.+
T Consensus 111 ~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 111 HSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEEC
Confidence 3678899998887 87777 68998888754
No 173
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.42 E-value=0.055 Score=30.07 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=28.4
Q ss_pred CCCccCE---EEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 34 DISSMPT---FVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 34 ~i~~~Pt---~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
++.++|+ .+++ ++|+.+.++.|. +.+.+.+.|.+.+
T Consensus 141 ~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 141 EARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 4557894 3445 899999999999 8888888888765
No 174
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.38 E-value=0.1 Score=29.55 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=32.3
Q ss_pred cCcHHHHHHcCCC------ccCEEEEE-eCCeEEeee----e-CCCHHHHHHHHHhh
Q psy11066 24 DESEDIAMAYDIS------SMPTFVFV-KSTAKVEQF----S-GANFDKLRSTVLAN 68 (70)
Q Consensus 24 ~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~----~-g~~~~~l~~~i~~~ 68 (70)
|....+++.|++. .+|+++++ ++|+..... . |.+.+++...|+.+
T Consensus 97 D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 97 DIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 4456788999985 58999999 578776554 2 33778887777654
No 175
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.37 E-value=0.11 Score=26.89 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=45.5
Q ss_pred HHHHHHhhCCC-cEEEEEeCcC--cHHHHHHcCCC----ccCE-EEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 5 MLQELASEFPD-VVFLKVDVDE--SEDIAMAYDIS----SMPT-FVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 5 ~~~~~~~~~~~-i~~~~vd~~~--~~~~~~~~~i~----~~Pt-~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
.+.++++...+ -.+.-|||.. ...+|.++.+. --|. +..|++|.--..+.-. +...+..|+.
T Consensus 39 ~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 39 LLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred HHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 56777887766 7788888876 77899999998 5554 6778999666666555 6667776654
No 176
>KOG2507|consensus
Probab=95.36 E-value=0.1 Score=33.08 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=42.3
Q ss_pred cEEEEEeCc--CcHHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 16 VVFLKVDVD--ESEDIAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 16 i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
++.++++.. .+..+++=|.+..+|.++++ ..|..++...|. +.++|.+.|++.
T Consensus 54 fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 54 FVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred eEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeeccccHHHHHHHHHHH
Confidence 444555543 34567788899999999999 799999999999 999998888764
No 177
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.29 E-value=0.079 Score=30.01 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEe
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVE 51 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~ 51 (70)
...+++++|+++||+++ ||+.+.
T Consensus 157 ~~~a~~~gI~gtPtfiI--nGky~v 179 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV--NGKYMV 179 (207)
T ss_pred HHHHHHcCCCCCCEEEE--CCEEEE
Confidence 45678999999999997 787543
No 178
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.046 Score=31.46 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=32.0
Q ss_pred CcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 25 ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 25 ~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
++..++..+++.+.||+++- |+ .+.|. +.++|.+.|+..+
T Consensus 203 ~~~~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 203 KNYKLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 35667899999999999865 32 77888 8899999888654
No 179
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.10 E-value=0.094 Score=26.71 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=32.9
Q ss_pred HHHHHHHhhCC--CcEEEEEeCcCc---------------------HHHHHHcCCC------ccCEEEEE-eCCeEEe
Q psy11066 4 VMLQELASEFP--DVVFLKVDVDES---------------------EDIAMAYDIS------SMPTFVFV-KSTAKVE 51 (70)
Q Consensus 4 p~~~~~~~~~~--~i~~~~vd~~~~---------------------~~~~~~~~i~------~~Pt~~~~-~~g~~~~ 51 (70)
+.+.++.++++ ++.++-|..+.. ..+++.|++. ..|+++++ ++|+.+.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 45666666654 477777776432 4567888888 99999998 4666543
No 180
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.01 E-value=0.23 Score=26.02 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=14.1
Q ss_pred ccCEEEEE-eCCeEEeeeeC
Q psy11066 37 SMPTFVFV-KSTAKVEQFSG 55 (70)
Q Consensus 37 ~~Pt~~~~-~~g~~~~~~~g 55 (70)
..|+.+++ ++|+.+..+.|
T Consensus 129 ~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 129 QLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred ccceEEEECCCCeEEEEecC
Confidence 68888888 56777776665
No 181
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.00 E-value=0.16 Score=24.12 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=22.4
Q ss_pred cEEEEEeCcCcH-----HHHHHcCCCccCEEEEEeCCeE
Q psy11066 16 VVFLKVDVDESE-----DIAMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 16 i~~~~vd~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~ 49 (70)
..+..+|.+++. .+.+.+++.++|+++ -+|+.
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 667777766543 266778999999984 46754
No 182
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.92 E-value=0.19 Score=24.44 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=35.9
Q ss_pred CcEEEEEeCcCcHHHH---HHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 15 DVVFLKVDVDESEDIA---MAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
++.|-.+|+++.++.. ...+...+|++++ ++ ..+.|++.+.|.+++...
T Consensus 25 gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 25 GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRLHPAP 76 (81)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHHHHhh
Confidence 5888899998776543 3457789999964 44 356688999998887543
No 183
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.88 E-value=0.22 Score=25.17 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=38.5
Q ss_pred HHHHHHHhhCC-CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeC------C-eEEeeeeCC-CHHHHHHHHHhh
Q psy11066 4 VMLQELASEFP-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKS------T-AKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 4 p~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~------g-~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
..|.+++..+. +..|+... ...++..+++ .|++++|+. - .....+.|. +.+.|.+||...
T Consensus 35 ~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 35 SEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred HHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 34566666663 46664332 2456778887 688888832 1 222347887 888999999754
No 184
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.77 E-value=0.29 Score=25.83 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=22.9
Q ss_pred HHHHHHcCCCc----cC--EEEEE-eCCeEEeeeeCC
Q psy11066 27 EDIAMAYDISS----MP--TFVFV-KSTAKVEQFSGA 56 (70)
Q Consensus 27 ~~~~~~~~i~~----~P--t~~~~-~~g~~~~~~~g~ 56 (70)
..+++.|++.. +| +.+++ ++|+.+..+.|.
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 97 GEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred hHHHHHhCCccccCCCccceEEEECCCCEEEEEEecC
Confidence 56788888873 33 77777 689999888885
No 185
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.70 E-value=0.11 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=26.1
Q ss_pred ccCE----EEEE-eCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 37 SMPT----FVFV-KSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 37 ~~Pt----~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
++|+ .+++ ++|+.+.++.|. +.+.+...|++.
T Consensus 115 ~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 115 KEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 4785 5555 899999999999 899998888765
No 186
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.44 E-value=0.2 Score=22.56 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=23.9
Q ss_pred CcEEEEEeCcCcHHH----HHHcCCCccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDESEDI----AMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~ 49 (70)
++.+..+|.++.++. .+..+..++|++++ +|+.
T Consensus 23 ~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 23 GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 488888888876443 34449999999885 6754
No 187
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.28 E-value=0.071 Score=26.62 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.5
Q ss_pred cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
..+-.+|..+.+++++.+++-+.||++=. .-.+..++.|.
T Consensus 36 y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGd 75 (87)
T TIGR02654 36 YALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGD 75 (87)
T ss_pred eEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeecc
Confidence 77888999999999999999999997632 34577888887
No 188
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.91 E-value=0.18 Score=25.92 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=36.3
Q ss_pred cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHH
Q psy11066 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLR 62 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~ 62 (70)
..+-.+|..+.+++++.++|-+.||++=. .-.+..++.|. +.+.+.
T Consensus 39 y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDlsd~~kVL 86 (103)
T PRK09301 39 YALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDLSDREKVL 86 (103)
T ss_pred eEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeecccccHHHHH
Confidence 77888999999999999999999996632 34577888887 344443
No 189
>KOG3425|consensus
Probab=93.66 E-value=0.28 Score=26.08 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=32.6
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcH-------HHHHHcCC-CccCEEEEEeC
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESE-------DIAMAYDI-SSMPTFVFVKS 46 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~-------~~~~~~~i-~~~Pt~~~~~~ 46 (70)
..|++.+.-+..+. +.|+.+++.+-+ ..-...++ .++||++=+.+
T Consensus 51 AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 51 AEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred hhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 35888888886665 999999986532 23445566 89999998864
No 190
>PRK15000 peroxidase; Provisional
Probab=93.54 E-value=0.46 Score=26.97 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=31.6
Q ss_pred cCcHHHHHHcCCC------ccCEEEEE-eCCeEEeeeeCC-----CHHHHHHHHHh
Q psy11066 24 DESEDIAMAYDIS------SMPTFVFV-KSTAKVEQFSGA-----NFDKLRSTVLA 67 (70)
Q Consensus 24 ~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~~ 67 (70)
|....+++.|++. ++|+.+++ ++|+......|. +.+++...++.
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 3445678889988 79999999 589888776663 45566666643
No 191
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=93.27 E-value=0.18 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHHHHHcCCCccCEEEEEeCCe
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTA 48 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~ 48 (70)
...+.++||.++||+++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567889999999999997765
No 192
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.04 E-value=0.014 Score=28.84 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.6
Q ss_pred HHHHHHhhC-CC-cEEEEEeCcCcHHHHHHcCCCccCEEE
Q psy11066 5 MLQELASEF-PD-VVFLKVDVDESEDIAMAYDISSMPTFV 42 (70)
Q Consensus 5 ~~~~~~~~~-~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~ 42 (70)
.+..+.+.+ ++ ..+-.+|+.+.+++++.++|-+.||++
T Consensus 17 ~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 17 NLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp HHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred HHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 344555543 33 888999999999999999999999986
No 193
>PRK13189 peroxiredoxin; Provisional
Probab=92.54 E-value=0.87 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=30.2
Q ss_pred cHHHHHHcCCC-------ccCEEEEE-eCCeEEeeee-----CCCHHHHHHHHHhh
Q psy11066 26 SEDIAMAYDIS-------SMPTFVFV-KSTAKVEQFS-----GANFDKLRSTVLAN 68 (70)
Q Consensus 26 ~~~~~~~~~i~-------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~~ 68 (70)
...+++.|++. ++|+++++ ++|+...... |.+.+++...|+.+
T Consensus 107 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 107 RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 45678888875 57888888 5888766654 33667777777643
No 194
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=92.35 E-value=0.34 Score=27.40 Aligned_cols=38 Identities=26% Similarity=0.486 Sum_probs=26.0
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
.-+.+.||.++||+++=.++.....+-|. ..+.++++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 34567799999999985432223467787 667766655
No 195
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=92.10 E-value=0.95 Score=23.47 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=25.2
Q ss_pred cCcHHHHHHcCCCccC---------EEEEE-eCCeEEeeeeCC
Q psy11066 24 DESEDIAMAYDISSMP---------TFVFV-KSTAKVEQFSGA 56 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~P---------t~~~~-~~g~~~~~~~g~ 56 (70)
|....++..|++...| +++++ ++|+.+.++.|.
T Consensus 87 D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 87 DPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred CCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 3445678889988776 67777 579999998887
No 196
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=91.35 E-value=1.5 Score=24.51 Aligned_cols=41 Identities=2% Similarity=-0.052 Sum_probs=28.0
Q ss_pred cHHHHHHcCCC------ccCEEEEE-eCCeEEeeeeCC-----CHHHHHHHHH
Q psy11066 26 SEDIAMAYDIS------SMPTFVFV-KSTAKVEQFSGA-----NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~ 66 (70)
...+++.|++. ..|+.+++ ++|+.+....+. +.+++.+.|+
T Consensus 101 ~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 101 TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 34678899986 46988888 689887776432 4555665554
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.30 E-value=0.24 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.5
Q ss_pred HHHHHHcCCCccCEEEEEe
Q psy11066 27 EDIAMAYDISSMPTFVFVK 45 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~ 45 (70)
...+..+|+.++||+++..
T Consensus 73 ~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 73 TALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHcCCCCCCEEEECC
Confidence 4567889999999999764
No 198
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=91.05 E-value=0.6 Score=22.37 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=21.7
Q ss_pred CCcEEEEEeCcCcHHHHHHcCCCccCEEEEEe
Q psy11066 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVFVK 45 (70)
Q Consensus 14 ~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 45 (70)
.+...+.+|.+.........+ .++|+++++.
T Consensus 51 ~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 51 KNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred CCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 347889999887655433222 7799999984
No 199
>PRK13599 putative peroxiredoxin; Provisional
Probab=90.96 E-value=1.8 Score=24.94 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=29.3
Q ss_pred cHHHHHHcCCC-------ccCEEEEE-eCCeEEeeee-----CCCHHHHHHHHHh
Q psy11066 26 SEDIAMAYDIS-------SMPTFVFV-KSTAKVEQFS-----GANFDKLRSTVLA 67 (70)
Q Consensus 26 ~~~~~~~~~i~-------~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~ 67 (70)
...++..|++. .+|+++++ ++|+....+. |.+.+++...|+.
T Consensus 100 ~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 100 LGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred CchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 45678889873 68999999 5788766653 2256677776654
No 200
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=90.93 E-value=0.59 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=19.3
Q ss_pred CccCEEEEEeCCeEEe-----eeeCCCHHHHHHHH
Q psy11066 36 SSMPTFVFVKSTAKVE-----QFSGANFDKLRSTV 65 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~~-----~~~g~~~~~l~~~i 65 (70)
.+-|++.+||+|+.+. .+.|.+.+.|.+-|
T Consensus 94 PSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L 128 (136)
T PF06491_consen 94 PSSPSIALFKDGELVHFIERHHIEGRPAEEIAENL 128 (136)
T ss_dssp --SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHH
T ss_pred CCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHH
Confidence 4889999999999864 45576655544433
No 201
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=90.64 E-value=0.61 Score=22.74 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=20.8
Q ss_pred CccCEEEEEe-CCeEEeeee--CCCHHHHHHHHHhh
Q psy11066 36 SSMPTFVFVK-STAKVEQFS--GANFDKLRSTVLAN 68 (70)
Q Consensus 36 ~~~Pt~~~~~-~g~~~~~~~--g~~~~~l~~~i~~~ 68 (70)
-+-|+++++. +|+++.++. +-+.+.+.+++.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 3669999994 788766654 34899999999765
No 202
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=89.93 E-value=1.4 Score=21.47 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=33.0
Q ss_pred HHHHHhhCCCcEEEEEeCcCc----HHHHHHcCC--CccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 6 LQELASEFPDVVFLKVDVDES----EDIAMAYDI--SSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 6 ~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
|+++..+++++.+..+|.+.. .++.+.++- .++|+++ -+|+. .| ..++|.+++.+.
T Consensus 20 L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~----ig-G~~dl~~~~~~~ 81 (86)
T TIGR02183 20 AEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH----VG-GCTDFEQLVKEN 81 (86)
T ss_pred HHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE----ec-CHHHHHHHHHhc
Confidence 444444444577888887643 346666664 7999985 36643 23 345566666543
No 203
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=89.85 E-value=2.6 Score=25.18 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=30.3
Q ss_pred cHHHHHHcCCC-----ccCEEEEE-eCCeEEeeee-----CCCHHHHHHHHHh
Q psy11066 26 SEDIAMAYDIS-----SMPTFVFV-KSTAKVEQFS-----GANFDKLRSTVLA 67 (70)
Q Consensus 26 ~~~~~~~~~i~-----~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~i~~ 67 (70)
...+++.||+. ..|+.+++ ++|+...... |.+.+++...|+.
T Consensus 171 ~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 171 SREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred ChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 46788999986 58999999 4898776553 2266777766653
No 204
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=89.27 E-value=2.6 Score=23.75 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=30.5
Q ss_pred cCcHHHHHHcCC----Ccc--CEEEEE-eCCeEEeeeeC-----CCHHHHHHHHHh
Q psy11066 24 DESEDIAMAYDI----SSM--PTFVFV-KSTAKVEQFSG-----ANFDKLRSTVLA 67 (70)
Q Consensus 24 ~~~~~~~~~~~i----~~~--Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~ 67 (70)
|....+++.|++ .++ |+.+++ ++|+.+..... .+.+++.+.|+.
T Consensus 99 D~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 99 DPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred cCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 345678899998 356 999999 58887665433 256677776654
No 205
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=88.98 E-value=1.3 Score=24.90 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=27.0
Q ss_pred cHHHHHHcCCC------ccCEEEEE-eCCeEEeeeeCC-----CHHHHHHHHH
Q psy11066 26 SEDIAMAYDIS------SMPTFVFV-KSTAKVEQFSGA-----NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~i~ 66 (70)
...+++.|++. .+|+.+++ ++|+.+....+. +.+++...|+
T Consensus 109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 35678889985 46888888 588877766553 3444544443
No 206
>COG3411 Ferredoxin [Energy production and conversion]
Probab=88.68 E-value=1.4 Score=20.77 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=21.5
Q ss_pred ccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 37 SMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
--|++++|.+| ...+. +.+.....+++++
T Consensus 16 ~gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 16 DGPVLVVYPEG----VWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred cCCEEEEecCC----eeEeccCHHHHHHHHHHHH
Confidence 35999999999 44455 7777777777664
No 207
>KOG1364|consensus
Probab=88.40 E-value=0.79 Score=28.44 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=41.1
Q ss_pred cEEEEEeCcCcHHHHHHcCCCccCEEEEE--eCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 16 VVFLKVDVDESEDIAMAYDISSMPTFVFV--KSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~--~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
.-.+..|..+.+.+...|.+.++|.+.++ ..|+.+++..|. ..++|.+-+...
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~F 188 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEF 188 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHH
Confidence 44556677788899999999999988888 468999999888 776666555543
No 208
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=87.81 E-value=1.2 Score=23.20 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=10.2
Q ss_pred CEEEEE-eCCeEEeeeeC
Q psy11066 39 PTFVFV-KSTAKVEQFSG 55 (70)
Q Consensus 39 Pt~~~~-~~g~~~~~~~g 55 (70)
|+++++ ++|+.+..+.|
T Consensus 125 ~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 125 AAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred ceEEEECCCCCEEEeecC
Confidence 345666 57777666543
No 209
>PRK13191 putative peroxiredoxin; Provisional
Probab=87.65 E-value=3.7 Score=23.60 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=28.2
Q ss_pred cHHHHHHcCCC-------ccCEEEEE-eCCeEEeeeeC-----CCHHHHHHHHHh
Q psy11066 26 SEDIAMAYDIS-------SMPTFVFV-KSTAKVEQFSG-----ANFDKLRSTVLA 67 (70)
Q Consensus 26 ~~~~~~~~~i~-------~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~ 67 (70)
...+++.||+. .+|+.+++ ++|+....+.+ .+.+++...|+.
T Consensus 105 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 105 MGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred chHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 35667788863 47888888 58887766543 256667666654
No 210
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=87.17 E-value=2.2 Score=20.33 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=22.6
Q ss_pred CcEEEEEeCcCc---HHHHHHcCCCccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDES---EDIAMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~---~~~~~~~~i~~~Pt~~~~~~g~~ 49 (70)
++.+..+|+++. ..+....+..++|+++ -+|+.
T Consensus 32 gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 67 (79)
T TIGR02190 32 GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL 67 (79)
T ss_pred CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE
Confidence 467777777655 3445556889999985 36754
No 211
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=86.51 E-value=2.8 Score=21.05 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=24.2
Q ss_pred ccCEEEEEeCCeE-EeeeeCC-CHHHHHHHHHhh
Q psy11066 37 SMPTFVFVKSTAK-VEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 37 ~~Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~ 68 (70)
..|++.+..+|+. -.++.|. .-.++.++|..+
T Consensus 60 ~~P~~~i~~~~~~~gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 60 RKPSFSINRPGEDTGIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred CCCEEEEecCCCcccEEEEecCCchhHHHHHHHh
Confidence 4799999877743 3788898 777888887654
No 212
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=2 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=24.0
Q ss_pred EEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 41 FVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+++=++|+++.|+... .++++...|++.+
T Consensus 131 FLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 131 FLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred EEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 4555899999999998 8888888888765
No 213
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=84.06 E-value=2.4 Score=19.95 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=21.4
Q ss_pred CcEEEEEeCcCcHHHH----HHcCCCccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDESEDIA----MAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g~~ 49 (70)
++.+-.+|++..++.. +..+..++|+++ -+|+.
T Consensus 23 ~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 59 (79)
T TIGR02181 23 GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVH 59 (79)
T ss_pred CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 4667777777665443 344788999974 46753
No 214
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=83.35 E-value=6.3 Score=22.32 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=28.0
Q ss_pred HHHHHHcCCC----c----cCEEEEE-eCCeEEeeeeC-----CCHHHHHHHHHhh
Q psy11066 27 EDIAMAYDIS----S----MPTFVFV-KSTAKVEQFSG-----ANFDKLRSTVLAN 68 (70)
Q Consensus 27 ~~~~~~~~i~----~----~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~i~~~ 68 (70)
..+++.|++. + +|+.+++ ++|+....+.+ .+.+++...|+.+
T Consensus 98 ~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 98 REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4678889876 2 3456777 68888777655 2566777777653
No 215
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=82.06 E-value=3.7 Score=22.88 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHcCCCcc-CEEEEE-eCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 29 IAMAYDISSM-PTFVFV-KSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 29 ~~~~~~i~~~-Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+...|+...- -++++. ++|++.....|. +.+++.+.|.
T Consensus 115 ~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 115 VRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred eeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 3444444433 345555 789999999999 9998888775
No 216
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=81.74 E-value=3.9 Score=18.83 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=21.8
Q ss_pred CcEEEEEeCcCcHHHHH----HcCCC-ccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDESEDIAM----AYDIS-SMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~~----~~~i~-~~Pt~~~~~~g~~ 49 (70)
++.+..+|++..++..+ ..+.. ++|+++ -+|+.
T Consensus 24 ~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 24 GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 47788888877654433 35666 899774 56643
No 217
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=80.76 E-value=5.6 Score=19.97 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=26.7
Q ss_pred CcEEEEEeCcCcHH-------HHHHcCCCccCEEEEEeCCeEEeeeeCCC-------HHHHHHHHHh
Q psy11066 15 DVVFLKVDVDESED-------IAMAYDISSMPTFVFVKSTAKVEQFSGAN-------FDKLRSTVLA 67 (70)
Q Consensus 15 ~i~~~~vd~~~~~~-------~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-------~~~l~~~i~~ 67 (70)
++.+..+|+++.++ +....+..++|++ |-+|+.+ .|++ ...|.++|.+
T Consensus 32 ~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i---GG~ddl~~l~~~G~L~~~l~~ 93 (99)
T TIGR02189 32 GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV---GGLENVMALHISGSLVPMLKQ 93 (99)
T ss_pred CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE---cCHHHHHHHHHcCCHHHHHHH
Confidence 35556666665432 2333467899997 4567443 3432 2456666654
No 218
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=77.67 E-value=9.1 Score=20.68 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHcCCCccCEEEEEe-CC---eEEeeeeCC-CHHHHHHHHHhh
Q psy11066 29 IAMAYDISSMPTFVFVK-ST---AKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~-~g---~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
.+..++....|.+.++- .. .++.++.|. +.+++...|...
T Consensus 88 ~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 88 TIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred HHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 45677899999988883 22 578999999 999988877654
No 219
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=76.50 E-value=2.3 Score=20.55 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=11.6
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.+|++|+++.
T Consensus 12 ~Pti~W~kng~~l~ 25 (79)
T cd05855 12 KPTLQWFHEGAILN 25 (79)
T ss_pred CCceEEEECCEECC
Confidence 57899999998774
No 220
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=75.95 E-value=5.8 Score=17.57 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=22.4
Q ss_pred cEEEEEeCcCcHHH----HHHcCCCccCEEEEEeCCeEEe
Q psy11066 16 VVFLKVDVDESEDI----AMAYDISSMPTFVFVKSTAKVE 51 (70)
Q Consensus 16 i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~~ 51 (70)
+.+..+|.+.+.+. .+..+..++|+++ .+|+.+.
T Consensus 25 i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 25 IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 77888888776543 3445677888774 4775544
No 221
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=74.57 E-value=3.5 Score=19.18 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.5
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.+|++|+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 57799999998774
No 222
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=73.68 E-value=5.1 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=19.5
Q ss_pred cCcHHHHHHcCCCccCEEEEEeCCeE
Q psy11066 24 DESEDIAMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~~~g~~ 49 (70)
|....+.++|+|..+|.++. .+|..
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCE
Confidence 44567899999999999886 45543
No 223
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=71.55 E-value=13 Score=19.64 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 35 ISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 35 i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..++|.+++||..+.++-..=. +..+|.+-+++.+
T Consensus 80 wp~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 80 WPGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred cCCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 4589999999988887777666 8999988887754
No 224
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=70.64 E-value=11 Score=18.19 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=20.5
Q ss_pred CcEEEEEeCcCcH-----HHHHHc-CCCccCEEEEEeCCe
Q psy11066 15 DVVFLKVDVDESE-----DIAMAY-DISSMPTFVFVKSTA 48 (70)
Q Consensus 15 ~i~~~~vd~~~~~-----~~~~~~-~i~~~Pt~~~~~~g~ 48 (70)
++.+..+|.++.. +..... |.+++|++++ +|+
T Consensus 25 g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 25 GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 4667776665543 444455 7899999774 454
No 225
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=69.94 E-value=9.1 Score=21.57 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=22.5
Q ss_pred EEEEEeCCeEEeeeeCC-CHHH--HHHHHHhhc
Q psy11066 40 TFVFVKSTAKVEQFSGA-NFDK--LRSTVLANR 69 (70)
Q Consensus 40 t~~~~~~g~~~~~~~g~-~~~~--l~~~i~~~~ 69 (70)
.+++=++|+++.|+... .... |++.|++.+
T Consensus 149 KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 149 KFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred EEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence 34555899999999887 5544 888887765
No 226
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=69.56 E-value=20 Score=21.06 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=23.3
Q ss_pred HHHHHHhhCC-CcEEEEEeCcCcHHHHHH----cCCCccC
Q psy11066 5 MLQELASEFP-DVVFLKVDVDESEDIAMA----YDISSMP 39 (70)
Q Consensus 5 ~~~~~~~~~~-~i~~~~vd~~~~~~~~~~----~~i~~~P 39 (70)
.|++.+...+ ++.+-.+|.+.+++.+++ +|++..+
T Consensus 51 lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 51 LLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred HHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 3444555556 499999998776665555 8888733
No 227
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=69.50 E-value=12 Score=18.47 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~ 51 (70)
..++.+++...+++++..+|.++.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 457889997778899999998773
No 228
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=68.77 E-value=11 Score=18.60 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=19.3
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~ 51 (70)
..++.+++...+++++..+|.+++
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 346778888788899999998773
No 229
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=68.34 E-value=30 Score=22.48 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=24.5
Q ss_pred ccCEEEEEeCCeE-EeeeeCC-CHHHHHHHHHhh
Q psy11066 37 SMPTFVFVKSTAK-VEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 37 ~~Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~ 68 (70)
..|++.+..+|+. -.++.|. .-.++.++|..+
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i 93 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLAL 93 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHH
Confidence 4799999877654 4788898 777888887654
No 230
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=68.32 E-value=4.5 Score=23.48 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=19.7
Q ss_pred cCcHHHHHHcCCCccCEEEEE-eCCeE
Q psy11066 24 DESEDIAMAYDISSMPTFVFV-KSTAK 49 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~-~~g~~ 49 (70)
|....+.++|+|..+|.++-- .+|+.
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCE
Confidence 445668999999999999862 55653
No 231
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=67.64 E-value=2.4 Score=20.11 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=27.0
Q ss_pred EEeCcCcHHHHHHcCCC----ccCEEEEEeCCeEE----eeeeCC-CHHHHHHHHHhh
Q psy11066 20 KVDVDESEDIAMAYDIS----SMPTFVFVKSTAKV----EQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 20 ~vd~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~----~~~~g~-~~~~l~~~i~~~ 68 (70)
.+|+.....++.+||+. +--|+.+++ ++.+ +...|. +.+.|..++.+.
T Consensus 6 ~lnf~afk~was~ygvefktngsqtlaii~-~ekislgqwh~rgrvskavlvkmlrkl 62 (79)
T PF09061_consen 6 SLNFNAFKEWASKYGVEFKTNGSQTLAIIK-NEKISLGQWHTRGRVSKAVLVKMLRKL 62 (79)
T ss_dssp ---HHHHHHHHHTTT-EEEEETTEEEEEET-TEEEE-TTHHHHS-EEHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCeEEecCCceEEEeec-CceeehhhhhhcCcchHHHHHHHHHHH
Confidence 34556677888888875 455555554 4333 344566 777777777653
No 232
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=67.20 E-value=22 Score=20.43 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=26.8
Q ss_pred HcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 32 AYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 32 ~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
.|.+..-..++++ .+|+....+.+. +.+.+.+.+++.+
T Consensus 165 ~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 165 NYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred CceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3444444556666 589888888887 8788888887654
No 233
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=67.15 E-value=11 Score=17.23 Aligned_cols=34 Identities=3% Similarity=0.157 Sum_probs=22.1
Q ss_pred CcEEEEEeCcCcHH---HHHHcCCCccCEEEEEeCCeEE
Q psy11066 15 DVVFLKVDVDESED---IAMAYDISSMPTFVFVKSTAKV 50 (70)
Q Consensus 15 ~i~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~ 50 (70)
++.+..+|.++... +....+..++|.+ |-+|+.+
T Consensus 25 ~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 25 GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 47777777766542 3344588899997 3567543
No 234
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=67.05 E-value=5.7 Score=20.86 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=20.2
Q ss_pred HHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 30 AMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 30 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+..+||+.+|.++|= ++ .-+.|- +-..-...+
T Consensus 77 Aw~lGi~k~PAVV~D--~~--~VVYG~~DV~~A~~~~ 109 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD--RR--YVVYGETDVARALALI 109 (113)
T ss_pred HHHcCCccCCEEEEc--CC--eEEecCccHHHHHHHH
Confidence 557899999998864 22 444565 555444443
No 235
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=66.94 E-value=5.4 Score=19.11 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.3
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.+|++|+.+.
T Consensus 12 ~P~v~W~k~g~~i~ 25 (81)
T cd04971 12 KPTLTWYHNGAVLN 25 (81)
T ss_pred CCcEEEEECCEECc
Confidence 57799999998764
No 236
>PRK10638 glutaredoxin 3; Provisional
Probab=65.71 E-value=14 Score=17.60 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=22.3
Q ss_pred CcEEEEEeCcCcHH----HHHHcCCCccCEEEEEeCCeEE
Q psy11066 15 DVVFLKVDVDESED----IAMAYDISSMPTFVFVKSTAKV 50 (70)
Q Consensus 15 ~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 50 (70)
++.+..+|+++.++ +.+..+...+|+++ -+|+.+
T Consensus 26 gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i 63 (83)
T PRK10638 26 GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHI 63 (83)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 47777778776553 34555778999874 467544
No 237
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=65.24 E-value=19 Score=19.13 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=30.9
Q ss_pred CcEEEEEeCcCcHH----------HHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 15 DVVFLKVDVDESED----------IAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 15 ~i~~~~vd~~~~~~----------~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
++.+.+.|...++. +-++-|...+|-++ -||+.+..- .+ +.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~~G-~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVKTG-RYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEEES-S---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEEec-CCCCHHHHHHHhC
Confidence 58888888876543 34556889999766 588665543 45 8999999875
No 238
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=64.84 E-value=13 Score=17.11 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=23.0
Q ss_pred CcEEEEEeCcCcHH----HHHHcCCCccCEEEEEeCCeEE
Q psy11066 15 DVVFLKVDVDESED----IAMAYDISSMPTFVFVKSTAKV 50 (70)
Q Consensus 15 ~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 50 (70)
++.+..+|+++.++ +.+..+-..+|+++ -+|+.+
T Consensus 25 gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~~i 62 (73)
T cd03027 25 GLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEKLV 62 (73)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 47788888887654 44555778899884 456433
No 239
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=63.46 E-value=25 Score=20.08 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=18.7
Q ss_pred EEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 40 TFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 40 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
++.+|+.|+.+ +.|. |.+++...+.+.
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~ 82 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKL 82 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHH
Confidence 56677888765 4577 888777766654
No 240
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=63.37 E-value=17 Score=17.86 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHHHHcCCC-ccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDIS-SMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i~-~~Pt~~~~~~g~~~~ 51 (70)
..++.+++. +.+++++..+|..++
T Consensus 29 K~~~~l~~~~~~~~lvL~eDGT~Vd 53 (78)
T cd06539 29 KTLDALVITSGLVTLVLEEDGTVVD 53 (78)
T ss_pred HHHHHhCCCCCCcEEEEeCCCCEEc
Confidence 457888884 578899999998773
No 241
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=62.59 E-value=21 Score=18.76 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 30 AMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 30 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
+..+||..+|.++|= +. .-+.|- +...-...+.+
T Consensus 76 Aw~lgi~k~PAVVfD-~~---~VVYG~tDV~~A~~~~~~ 110 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD-DR---YVVYGETDVARALARIEQ 110 (114)
T ss_pred HHHhCccccCEEEEc-CC---eEEecccHHHHHHHHHHH
Confidence 567899999998865 22 344566 55554444443
No 242
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=62.44 E-value=19 Score=18.06 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=21.0
Q ss_pred CccCEEEEEe--CCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 36 SSMPTFVFVK--STAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 36 ~~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
..=|++++|. +| ...|. +.+++...+.+++
T Consensus 51 ~~gp~vvvyP~~~g----~wy~~v~p~~v~~Iv~~hl 83 (97)
T cd03062 51 KFAGNVIIYPKGDG----IWYGRVTPEHVPPIVDRLI 83 (97)
T ss_pred CcCCEEEEEeCCCe----eEEeecCHHHHHHHHHHHh
Confidence 3468999998 55 33455 8888888887654
No 243
>PRK13817 ribosome-binding factor A; Provisional
Probab=62.29 E-value=22 Score=18.70 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHHcCCCccCEEEEEeCC
Q psy11066 28 DIAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g 47 (70)
.++++.+++.+|.+.|+.+.
T Consensus 75 ~l~~~l~lR~~PeL~F~~D~ 94 (119)
T PRK13817 75 LLAQATVLRYVPKLEFVYDE 94 (119)
T ss_pred HHHHhCCCeECCEEEEEEcC
Confidence 36778899999999999765
No 244
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=62.07 E-value=14 Score=18.68 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 31 MAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 31 ~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
-+|++..--.=++|.+|+.+++-.|. ....+...+..
T Consensus 17 lryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~a 54 (111)
T PF02484_consen 17 LRYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNA 54 (111)
T ss_pred HHHHhhccccceEecCCcEEEecCChHHHHHHHHHHHH
Confidence 45666655566889999999999998 77777655543
No 245
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=61.93 E-value=8 Score=18.19 Aligned_cols=32 Identities=6% Similarity=0.165 Sum_probs=19.2
Q ss_pred CCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 34 DISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 34 ~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
|..++|.++ +|..+..+....-.+|.+|+.+.
T Consensus 14 Ga~~lP~II---GGSDLi~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 14 GAGGLPHII---GGSDLIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred CCCCCCeee---cchhhhhccccccccHHHHHHHH
Confidence 445788877 56554444443333788888653
No 246
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=61.83 E-value=32 Score=20.51 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=30.2
Q ss_pred EEEeCcCcHHHHHHcCCCccCE-EEEEeCCeEEeee-eC---CCHHHHHHHHHhh
Q psy11066 19 LKVDVDESEDIAMAYDISSMPT-FVFVKSTAKVEQF-SG---ANFDKLRSTVLAN 68 (70)
Q Consensus 19 ~~vd~~~~~~~~~~~~i~~~Pt-~~~~~~g~~~~~~-~g---~~~~~l~~~i~~~ 68 (70)
+.||.=++ .....|+ ++|. +.++++|+.+..- .| ++.+++++|++++
T Consensus 185 i~vD~mdN-~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 185 IVVDTMDN-NFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred EEEEccCC-HHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 35555443 3456666 6787 5555888866432 23 3789999999875
No 247
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.20 E-value=43 Score=21.80 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=24.6
Q ss_pred CccCEEEEEeCCe-EEeeeeCC-CHHHHHHHHHhh
Q psy11066 36 SSMPTFVFVKSTA-KVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 36 ~~~Pt~~~~~~g~-~~~~~~g~-~~~~l~~~i~~~ 68 (70)
...|++.+.++|+ .-.++.|. .-.++.++|..+
T Consensus 60 ~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i 94 (515)
T TIGR03140 60 LRKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAI 94 (515)
T ss_pred CCCCeEEEecCCcccceEEEecCCcHHHHHHHHHH
Confidence 3569999887775 34788898 777788877654
No 248
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=60.97 E-value=22 Score=18.46 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHcCCCccC-EEEEE-eCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 28 DIAMAYDISSMP-TFVFV-KSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 28 ~~~~~~~i~~~P-t~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
.+.+.|++..-. +++++ ++|.+..+.... +.+.|-+.|+..
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 778889866333 33444 899999998888 999999988753
No 249
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=60.59 E-value=9.7 Score=17.96 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=11.7
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
--|++.++++|+.+.
T Consensus 11 P~P~i~W~k~~~~i~ 25 (75)
T cd05892 11 PPPKIFWKRNNEMVQ 25 (75)
T ss_pred CCCeEEEEECCEECc
Confidence 458899999997753
No 250
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=58.95 E-value=11 Score=17.37 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=11.0
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.++++|+.+.
T Consensus 12 ~p~v~W~k~g~~l~ 25 (71)
T cd04976 12 PPEIQWYKNGKLIS 25 (71)
T ss_pred CCEEEEEECCEECC
Confidence 46789999998763
No 251
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.57 E-value=39 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 31 MAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 31 ~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
+.-+|.++||++ .||++.. .|. +.++|.+.|+
T Consensus 163 ear~IMaVPtvf--lnGe~fg--~GRmtleeilaki~ 195 (520)
T COG3634 163 EARNIMAVPTVF--LNGEEFG--QGRMTLEEILAKID 195 (520)
T ss_pred HhccceecceEE--Ecchhhc--ccceeHHHHHHHhc
Confidence 344688999976 5675432 244 6666666654
No 252
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=58.42 E-value=19 Score=16.70 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=20.9
Q ss_pred cEEEEEeCcCc-----HHHHHHcCCCccCEEEEEeCCeE
Q psy11066 16 VVFLKVDVDES-----EDIAMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 16 i~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~ 49 (70)
..+..++.+.. ..+.+..+..++|++ |-+|+.
T Consensus 27 ~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 27 PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 55666776654 235566788999997 456754
No 253
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=58.39 E-value=26 Score=18.43 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=16.4
Q ss_pred HHHHcCCCccCEEEEEeCC
Q psy11066 29 IAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~~g 47 (70)
+++..++..+|++.|..+.
T Consensus 80 l~~~~~lr~~PeL~F~~D~ 98 (118)
T COG0858 80 LGKRLRLRKTPELHFVYDD 98 (118)
T ss_pred HHHhCCeEeCCeEEEEeCc
Confidence 5778899999999999876
No 254
>PRK05463 hypothetical protein; Provisional
Probab=58.13 E-value=24 Score=21.29 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=31.9
Q ss_pred hHHHHHHHhhCCC-cEEEEE-e--CcCcHHHHHHcCCC-ccCEEEEEeCCeEEeee
Q psy11066 3 LVMLQELASEFPD-VVFLKV-D--VDESEDIAMAYDIS-SMPTFVFVKSTAKVEQF 53 (70)
Q Consensus 3 ~p~~~~~~~~~~~-i~~~~v-d--~~~~~~~~~~~~i~-~~Pt~~~~~~g~~~~~~ 53 (70)
+.-|..+.+.++. .-++.+ + -.....++....|+ .+|...+|++|+.+...
T Consensus 44 A~DF~~FC~rNpkpCPLL~v~~~G~~~~~~la~~~DIRTD~P~Y~vy~~G~l~~e~ 99 (262)
T PRK05463 44 AYDFLLFCQRNPKPCPLLDVTEPGSPELPLLGPDADIRTDVPRYRVYRDGELVEEV 99 (262)
T ss_pred HHHHHHHHhhCCCCCCceeecCCCCCcccccCCCcccccCCCceEEEECCEEeeec
Confidence 3456666677665 443322 2 22334456666776 67999999999877654
No 255
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=58.11 E-value=12 Score=17.45 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=10.9
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.++++|+.+.
T Consensus 12 ~P~v~W~k~g~~l~ 25 (70)
T cd05864 12 PPEVKWYKNGQLIV 25 (70)
T ss_pred CCEEEEEECCEECC
Confidence 46688899998764
No 256
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=57.87 E-value=46 Score=21.13 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=35.9
Q ss_pred cEEEEEeCc-C-c-HHHHHHcCCCccCE-EEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 16 VVFLKVDVD-E-S-EDIAMAYDISSMPT-FVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 16 i~~~~vd~~-~-~-~~~~~~~~i~~~Pt-~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
++++.+.|- . + ..--.++|+.+-+. .++|++|+.+.++.+. -.+.|.+.|+++
T Consensus 299 lkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 299 LKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred cEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 788887773 2 1 23356788886555 7888999999988765 455666666544
No 257
>PRK13815 ribosome-binding factor A; Provisional
Probab=57.56 E-value=27 Score=18.41 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=16.4
Q ss_pred HHHHcCCCccCEEEEEeCC
Q psy11066 29 IAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~~g 47 (70)
++++.+++.+|.+.|+.+.
T Consensus 77 l~~~l~lR~~PeL~F~~D~ 95 (122)
T PRK13815 77 LGKVLRMRYAPELIFKYDE 95 (122)
T ss_pred HHHhCCCeECCEEEEEECC
Confidence 6778899999999999765
No 258
>PRK13818 ribosome-binding factor A; Provisional
Probab=57.26 E-value=28 Score=18.36 Aligned_cols=19 Identities=11% Similarity=0.481 Sum_probs=16.3
Q ss_pred HHHHcCCCccCEEEEEeCC
Q psy11066 29 IAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~~g 47 (70)
++++..++.+|.+.|+.+.
T Consensus 78 la~~l~lR~~P~L~F~~D~ 96 (121)
T PRK13818 78 LGQTLTVYKVPELIFKRDN 96 (121)
T ss_pred HHhhCCCeECCEEEEEeCC
Confidence 5778899999999999765
No 259
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=56.65 E-value=9.6 Score=19.09 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=11.5
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
--|++.++++|+.+.
T Consensus 31 P~P~v~W~kdg~~l~ 45 (101)
T cd05859 31 PPPQIRWLKDNRTLI 45 (101)
T ss_pred CCCceEEEECCEECc
Confidence 346799999998764
No 260
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=56.30 E-value=34 Score=19.04 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=29.7
Q ss_pred cCcHHHHHHcCCCc------------cCEEEEE-eCCeEEeeeeCC----CHHHHHHHHHhhc
Q psy11066 24 DESEDIAMAYDISS------------MPTFVFV-KSTAKVEQFSGA----NFDKLRSTVLANR 69 (70)
Q Consensus 24 ~~~~~~~~~~~i~~------------~Pt~~~~-~~g~~~~~~~g~----~~~~l~~~i~~~~ 69 (70)
|....+++.|++.. .++.+++ ++|+....+... ..+++.+.++++.
T Consensus 94 D~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 94 DEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred CCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence 45567899999843 4556666 678887766443 2456666666553
No 261
>PHA02131 hypothetical protein
Probab=55.93 E-value=21 Score=16.47 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=20.0
Q ss_pred CccCEEEEEeCCeEEeeeeCCCHHHHHH
Q psy11066 36 SSMPTFVFVKSTAKVEQFSGANFDKLRS 63 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 63 (70)
.++...+.|++|++++.-..-+.+++.+
T Consensus 27 ~g~~c~imfk~~~v~dctfk~dtaqfr~ 54 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTFKNDTAQFRS 54 (70)
T ss_pred cceEEEEEEcCCCEEEeeecCcHHHHhh
Confidence 5777889999999988766554444443
No 262
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=55.60 E-value=13 Score=17.29 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=11.5
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.++++|+.+.
T Consensus 15 ~P~i~W~k~g~~i~ 28 (76)
T cd05868 15 KPSISWLTNGVPIE 28 (76)
T ss_pred CCeEEEEECCEEcc
Confidence 58899999998763
No 263
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=55.53 E-value=13 Score=18.08 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=13.8
Q ss_pred CCccCEEEEEeCCeEEee
Q psy11066 35 ISSMPTFVFVKSTAKVEQ 52 (70)
Q Consensus 35 i~~~Pt~~~~~~g~~~~~ 52 (70)
-.--|++.+|++|+++..
T Consensus 11 skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 11 SKPAATLRWYRDRKELKG 28 (80)
T ss_pred ccCCCeEEEEECCEECCC
Confidence 355688999999988743
No 264
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=54.88 E-value=16 Score=18.25 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=18.9
Q ss_pred eCcCcHHHHHHcC-CCccCEEEEEeCC
Q psy11066 22 DVDESEDIAMAYD-ISSMPTFVFVKST 47 (70)
Q Consensus 22 d~~~~~~~~~~~~-i~~~Pt~~~~~~g 47 (70)
=++.+.++.+++. +.++|.+.+-++.
T Consensus 69 VaT~D~~Lr~~lr~~~GvPvi~l~~~~ 95 (101)
T PF04900_consen 69 VATQDKELRRRLRKIPGVPVIYLRRNV 95 (101)
T ss_pred EEecCHHHHHHHhcCCCCCEEEEECCE
Confidence 3455677888887 9999998877433
No 265
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=54.41 E-value=31 Score=21.79 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=37.5
Q ss_pred cEEEEEeCcCc---HHHHHHcCCCc--cCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 16 VVFLKVDVDES---EDIAMAYDISS--MPTFVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 16 i~~~~vd~~~~---~~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+++..+.|--| ..--.++|+.+ -|...+|.+|+.+.+..+. -.++|...++++.
T Consensus 292 l~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel~~~i~~~~ 351 (361)
T COG0821 292 LKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEELEALIEAYA 351 (361)
T ss_pred ceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHHHHHHHHHH
Confidence 66666665322 11234566664 5889999999999998888 6778888777653
No 266
>PRK00521 rbfA ribosome-binding factor A; Validated
Probab=53.06 E-value=33 Score=17.91 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=16.4
Q ss_pred HHHHcCCCccCEEEEEeCC
Q psy11066 29 IAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~~g 47 (70)
+++..++..+|.+.|+.+.
T Consensus 80 la~~l~lr~~P~L~F~~D~ 98 (120)
T PRK00521 80 LGKRLRLRYVPELRFVYDE 98 (120)
T ss_pred HHhhCCCccCCEEEEEECC
Confidence 6778899999999999765
No 267
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=53.05 E-value=16 Score=18.99 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=14.2
Q ss_pred HHHHHHcCCCccCEEE
Q psy11066 27 EDIAMAYDISSMPTFV 42 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~ 42 (70)
++++++++++.+|.++
T Consensus 83 ddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 83 DDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHhCCCcccEEE
Confidence 6789999999999876
No 268
>PRK00394 transcription factor; Reviewed
Probab=53.01 E-value=41 Score=19.00 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=16.8
Q ss_pred EEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 40 TFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 40 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
|+.+|..|+.+ +.|. +.+++...+++.
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 168 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKI 168 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 45556666554 4577 887777766554
No 269
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=52.78 E-value=15 Score=17.06 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=10.9
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.++++|+.+.
T Consensus 12 ~P~v~W~k~~~~i~ 25 (75)
T cd05744 12 PPQIFWKKNNEMLT 25 (75)
T ss_pred CCeEEEEECCEECC
Confidence 47889999997754
No 270
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=52.69 E-value=33 Score=17.83 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=23.0
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
.++++.+++.+|.+.|+.+. .. ....+.+.|++
T Consensus 77 ~l~k~l~lR~~P~L~F~~D~-------s~e~~~~i~~ll~~ 110 (114)
T TIGR00082 77 LLGQAMRLRKTPELHFVKDN-------SLDKGMRIENLINS 110 (114)
T ss_pred HHHhhCCceECCEEEEEecC-------cHHHHHHHHHHHHH
Confidence 36788899999999999764 33 44455555544
No 271
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=51.67 E-value=16 Score=17.18 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=10.5
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
-|++.++++|..+
T Consensus 12 ~P~v~W~kdg~~l 24 (72)
T cd07702 12 APEVIWLKDGLPA 24 (72)
T ss_pred CCeEEEEECCEEC
Confidence 4789999999765
No 272
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=50.95 E-value=15 Score=17.13 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=10.7
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.|++.++++|..+
T Consensus 12 ~p~v~W~k~g~~l 24 (77)
T cd05760 12 RPTYQWFRDGTPL 24 (77)
T ss_pred CCcEEEEECCEEC
Confidence 5779999999865
No 273
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=50.78 E-value=44 Score=18.78 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=16.8
Q ss_pred EEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 40 TFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 40 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
|+.+|..|+.+ +.|. +.+++...+++.
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 167 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKL 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 45556666554 3566 887777766554
No 274
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.57 E-value=43 Score=23.08 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=28.1
Q ss_pred cEEEEEeCcCcHHHHHHcC--------CCccCEEEEE-eCCeEEe
Q psy11066 16 VVFLKVDVDESEDIAMAYD--------ISSMPTFVFV-KSTAKVE 51 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~--------i~~~Pt~~~~-~~g~~~~ 51 (70)
.+-++||-++-+++-+-|. --++|-.+|. .+|++..
T Consensus 79 FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 79 FVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred ceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceee
Confidence 6777899998888766664 5599998887 7888764
No 275
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=50.25 E-value=12 Score=18.02 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=9.8
Q ss_pred CccCEEEEEeCCeE
Q psy11066 36 SSMPTFVFVKSTAK 49 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~ 49 (70)
..-.|+.+|++|+-
T Consensus 13 kDGstvyiFKDGKM 26 (73)
T PF11525_consen 13 KDGSTVYIFKDGKM 26 (73)
T ss_dssp TTSEEEEEETTS-E
T ss_pred CCCCEEEEEcCCce
Confidence 34468999999974
No 276
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=50.19 E-value=18 Score=16.67 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.1
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.++++|+.+.
T Consensus 15 ~p~i~W~k~g~~i~ 28 (76)
T cd05867 15 TPNITWSINGAPIE 28 (76)
T ss_pred CCeEEEEECCEECC
Confidence 57799999997654
No 277
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=49.98 E-value=19 Score=16.84 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=11.1
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|+.+
T Consensus 11 P~P~v~W~k~g~~~ 24 (77)
T cd05875 11 PVPTFQWTRNGKFF 24 (77)
T ss_pred CCCEEEEEECCEEc
Confidence 46889999999754
No 278
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=49.74 E-value=18 Score=19.82 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=14.2
Q ss_pred HHHHHHcCCCccCEEE
Q psy11066 27 EDIAMAYDISSMPTFV 42 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~ 42 (70)
++++++++++.+|.++
T Consensus 121 ddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHhCCCcccEEe
Confidence 6789999999999876
No 279
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=49.62 E-value=46 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=15.7
Q ss_pred EEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 41 FVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.+|..|+.+ +.|. +.+++...++.+
T Consensus 142 ~lIF~sGkvv--itGaks~~~~~~a~~~i 168 (174)
T cd00652 142 LLIFVSGKIV--ITGAKSREDIYEAVEKI 168 (174)
T ss_pred EEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 3455556544 4567 777777766554
No 280
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=49.55 E-value=44 Score=21.23 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=37.2
Q ss_pred CcEEEEEeCcCcH--HH-HHHcCCC-ccCE-EEEEeCCeEEeee-eCC-CHHHHHHHHHhh
Q psy11066 15 DVVFLKVDVDESE--DI-AMAYDIS-SMPT-FVFVKSTAKVEQF-SGA-NFDKLRSTVLAN 68 (70)
Q Consensus 15 ~i~~~~vd~~~~~--~~-~~~~~i~-~~Pt-~~~~~~g~~~~~~-~g~-~~~~l~~~i~~~ 68 (70)
++++..+.|--|. +. -.+||+. +-|- ..+|++|+.+.+. ... -.+.|.+.|+++
T Consensus 298 ~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 298 GLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp G-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHHHHHHH
T ss_pred CceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHHHHHhh
Confidence 4889988886442 11 2467777 4444 8899999999998 555 567888888775
No 281
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=49.28 E-value=20 Score=16.34 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=10.9
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|..+
T Consensus 12 P~p~v~W~k~g~~l 25 (74)
T cd05748 12 PTPTVTWSKDGKPL 25 (74)
T ss_pred CCCeEEEEECCEEc
Confidence 45788899998765
No 282
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=49.22 E-value=16 Score=16.56 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=11.7
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
..|++.++++|+.+.
T Consensus 12 P~p~~~W~k~g~~l~ 26 (75)
T cd05750 12 PSLRFKWFKDGKELN 26 (75)
T ss_pred CCceEEEEcCCeecc
Confidence 358899999997653
No 283
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=48.75 E-value=20 Score=16.46 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=10.9
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.++++|..+.
T Consensus 12 ~p~v~W~k~~~~~~ 25 (74)
T cd05738 12 DPEITWFKDFLPVD 25 (74)
T ss_pred CCEEEEEECCEECc
Confidence 46799999987654
No 284
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=48.30 E-value=49 Score=18.60 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=16.5
Q ss_pred EEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 40 TFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 40 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
|+.+|..|+.+- .|. +.+++...+++.
T Consensus 49 t~lIF~SGKivi--TGaks~e~a~~a~~~i 76 (174)
T cd04516 49 TALIFSSGKMVC--TGAKSEDDSKLAARKY 76 (174)
T ss_pred EEEEECCCeEEE--EecCCHHHHHHHHHHH
Confidence 456677776543 466 777766555543
No 285
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=48.24 E-value=47 Score=18.32 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=22.6
Q ss_pred ccCEEEEEeCCe--EEeeeeCC-CHHHHHHHHHhhc
Q psy11066 37 SMPTFVFVKSTA--KVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 37 ~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+++.-++|.||. .+...... ++++++.-+++.+
T Consensus 69 A~~~~~VyDnG~~~vVi~v~~~i~~~~leaTL~QaA 104 (145)
T PF10726_consen 69 AVRYPIVYDNGADQVVIAVPPDITPEALEATLEQAA 104 (145)
T ss_pred ceEeeEEEECCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344567888874 45555555 8999999888764
No 286
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=47.89 E-value=15 Score=18.49 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=11.7
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.++++|+.+.
T Consensus 33 ~p~v~W~Kdg~~i~ 46 (101)
T cd04975 33 PPHINWTYDNRTLT 46 (101)
T ss_pred CCccEEEeCCeeCC
Confidence 67899999998764
No 287
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=47.88 E-value=32 Score=16.36 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHcCCCccCEEEEEeCCeEEeeee
Q psy11066 29 IAMAYDISSMPTFVFVKSTAKVEQFS 54 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~~g~~~~~~~ 54 (70)
.+++|++. ||-++-.+|-++..+.
T Consensus 35 a~~kfg~~--~~~v~~~dgaeIdDI~ 58 (69)
T PF11834_consen 35 ASEKFGFS--ATKVLNEDGAEIDDID 58 (69)
T ss_pred HHHHhCCC--ceEEEcCCCCEEeEEE
Confidence 46899984 9999888888776553
No 288
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=47.52 E-value=69 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=26.6
Q ss_pred ccCEEEEEeCCeE-EeeeeCC-CHHHHHHHHHhhc
Q psy11066 37 SMPTFVFVKSTAK-VEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 37 ~~Pt~~~~~~g~~-~~~~~g~-~~~~l~~~i~~~~ 69 (70)
-+|-+.+-++|+. .-.+.|+ +++.|...+.+..
T Consensus 302 ~IPDF~~~~~g~~vylEIvGfWtpeYL~rKl~kl~ 336 (379)
T PF05626_consen 302 MIPDFRFEHDGRRVYLEIVGFWTPEYLERKLEKLR 336 (379)
T ss_pred EccceeEEECCEEEEEEEecCCCHHHHHHHHHHHh
Confidence 5788888787765 4689999 9999999988753
No 289
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=47.42 E-value=43 Score=17.70 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=45.3
Q ss_pred chHHHHHHHhhCC---CcEEEEEeCcCcHHHH----HHcCCC-ccCEEEEEe--CCeEEe-eee---CC-CHHHHHHHHH
Q psy11066 2 SLVMLQELASEFP---DVVFLKVDVDESEDIA----MAYDIS-SMPTFVFVK--STAKVE-QFS---GA-NFDKLRSTVL 66 (70)
Q Consensus 2 ~~p~~~~~~~~~~---~i~~~~vd~~~~~~~~----~~~~i~-~~Pt~~~~~--~g~~~~-~~~---g~-~~~~l~~~i~ 66 (70)
+.+.+.++|+++. ++.|+=||-++.+-+. +.|+|. .-|.+=+.. +...++ .+. .. +.+.|.+||+
T Consensus 38 Fl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~Wie 117 (120)
T cd03074 38 FLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIE 117 (120)
T ss_pred HHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEecccccccCcHHHHHHHHH
Confidence 4577888998873 4999999999987654 455655 357766663 222222 222 23 7889999998
Q ss_pred hhc
Q psy11066 67 ANR 69 (70)
Q Consensus 67 ~~~ 69 (70)
..+
T Consensus 118 dVL 120 (120)
T cd03074 118 DVL 120 (120)
T ss_pred hhC
Confidence 653
No 290
>KOG1651|consensus
Probab=47.39 E-value=21 Score=20.14 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred EEEEeCCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 41 FVFVKSTAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
+++=++|+++.|+... +..+++.-|++++
T Consensus 140 FLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 140 FLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred EeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 5555899999999776 6666666666654
No 291
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=47.14 E-value=52 Score=18.49 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=16.9
Q ss_pred EEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 40 TFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 40 t~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
|+.+|.+|+.+ ..|. +.+++...+++.
T Consensus 49 t~lIF~sGKiv--iTGaks~~~~~~a~~~~ 76 (174)
T cd04517 49 TASVWSSGKIT--ITGATSEEEAKQAARRA 76 (174)
T ss_pred EEEEECCCeEE--EEccCCHHHHHHHHHHH
Confidence 55666777654 3466 777776665543
No 292
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=46.83 E-value=36 Score=16.55 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHHHHcCCC-ccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDIS-SMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i~-~~Pt~~~~~~g~~~~ 51 (70)
..++.+++. +.+++++..+|.++.
T Consensus 27 K~~~~l~l~~~~~~l~L~eDGT~Vd 51 (74)
T smart00266 27 KVCDKLALPDSPVTLVLEEDGTIVD 51 (74)
T ss_pred HHHHHhCCCCCCcEEEEecCCcEEc
Confidence 457888887 577788889998773
No 293
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=46.30 E-value=22 Score=16.63 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=12.1
Q ss_pred CccCEEEEEeCCeEE
Q psy11066 36 SSMPTFVFVKSTAKV 50 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~ 50 (70)
.-.|++.++++|..+
T Consensus 10 ~P~P~i~W~k~g~~l 24 (77)
T cd05874 10 KPPPSFSWTRNGTHF 24 (77)
T ss_pred cCCCeEEEEECCeEC
Confidence 357899999999765
No 294
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=46.04 E-value=23 Score=16.58 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.8
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.++++|..+.
T Consensus 12 ~P~v~W~k~~~~l~ 25 (75)
T cd05893 12 HPQIFWKKENESLT 25 (75)
T ss_pred CCEEEEEECCEECC
Confidence 57899999887653
No 295
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=45.59 E-value=23 Score=16.50 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=11.5
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
..|++.++++|+.+.
T Consensus 22 P~p~i~W~k~g~~l~ 36 (85)
T cd05857 22 PTPTMRWLKNGKEFK 36 (85)
T ss_pred CCCEEEEEECCEECC
Confidence 457899999997753
No 296
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=45.24 E-value=36 Score=18.69 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=22.3
Q ss_pred EeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 21 VDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 21 vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
+...-..++.++|+++++| ++.|..+.-+.|.
T Consensus 28 msa~LSkeLr~k~~~Rs~~----IkkGD~V~Vi~Gk 59 (143)
T PTZ00194 28 MSAPLSKELRAKYNVRSMP----VRKDDEVMVVRGH 59 (143)
T ss_pred hcCccCHHHHHHhCCccce----eecCCEEEEecCC
Confidence 4445567899999999986 4566666655554
No 297
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=45.12 E-value=38 Score=16.43 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=19.2
Q ss_pred cCEEEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 38 MPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
-.|+.+|..|+.+. .|. +.+++...+++.
T Consensus 49 ~~t~~IF~sGki~i--tGaks~~~~~~a~~~i 78 (86)
T PF00352_consen 49 KATVLIFSSGKIVI--TGAKSEEEAKKAIEKI 78 (86)
T ss_dssp TEEEEEETTSEEEE--EEESSHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEE--EecCCHHHHHHHHHHH
Confidence 46778888887654 355 777766666543
No 298
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=45.01 E-value=40 Score=16.55 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=17.5
Q ss_pred HHHHHcCC-CccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDI-SSMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i-~~~Pt~~~~~~g~~~~ 51 (70)
..++.+++ ...+++++..+|.++.
T Consensus 29 K~~~~l~l~~~~~~lvL~eDGTeVd 53 (78)
T cd01615 29 KACEKLKLPSAPVTLVLEEDGTEVD 53 (78)
T ss_pred HHHHHcCCCCCCeEEEEeCCCcEEc
Confidence 45788888 4556677779998773
No 299
>PHA03050 glutaredoxin; Provisional
Probab=44.89 E-value=44 Score=17.08 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEEeCcC---c----HHHHHHcCCCccCEEEEEeCCeEE
Q psy11066 17 VFLKVDVDE---S----EDIAMAYDISSMPTFVFVKSTAKV 50 (70)
Q Consensus 17 ~~~~vd~~~---~----~~~~~~~~i~~~Pt~~~~~~g~~~ 50 (70)
.+..+|.++ . ..+.+..|..++|+++ -+|+.+
T Consensus 42 ~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~i 80 (108)
T PHA03050 42 AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTSI 80 (108)
T ss_pred CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEEE
Confidence 455566654 2 3455667888999984 457544
No 300
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=44.80 E-value=24 Score=17.22 Aligned_cols=15 Identities=13% Similarity=0.682 Sum_probs=11.9
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
-.|++.++++|+.+.
T Consensus 32 P~P~i~W~k~g~~l~ 46 (94)
T cd05848 32 PVPTYRWLRNGTEID 46 (94)
T ss_pred CCCEEEEEECCeECc
Confidence 468899999998764
No 301
>PLN00062 TATA-box-binding protein; Provisional
Probab=44.79 E-value=58 Score=18.44 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=15.3
Q ss_pred EEEEeCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 41 FVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+.+|..|+.+ +.|. +.+++.+.++.+
T Consensus 141 ~liF~sGkvv--itGaks~~~~~~ai~~i 167 (179)
T PLN00062 141 LLIFVSGKIV--ITGAKVREEIYTAFENI 167 (179)
T ss_pred EEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 4455555544 3466 777777766544
No 302
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=44.25 E-value=20 Score=17.60 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=12.2
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
.-|++.+|++|+.+.
T Consensus 28 ~~p~i~Wyk~~~~i~ 42 (92)
T cd05757 28 TLPPVQWYKDCKLLE 42 (92)
T ss_pred CCCcEEEeECCEECC
Confidence 468999999998753
No 303
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=44.09 E-value=42 Score=16.57 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHcCCC---ccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDIS---SMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i~---~~Pt~~~~~~g~~~~ 51 (70)
..++.+++. ...++++..+|.++.
T Consensus 29 K~~~~l~l~~~~~~~~lvL~eDGT~Vd 55 (80)
T cd06536 29 KACESLGFDSSSAPITLVLAEDGTIVE 55 (80)
T ss_pred HHHHHhCCCCCCCceEEEEecCCcEEc
Confidence 347788887 357788889998773
No 304
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=43.77 E-value=41 Score=16.40 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=22.1
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
...|.++++.++ +.=..+|.+.....| +.+.+.++++
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G-~~~~l~~f~~ 60 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG-EEEQLEEFIK 60 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE-EHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe-CHHHHHHHHH
Confidence 467889999886 333357777777777 4444444443
No 305
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.56 E-value=27 Score=15.81 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.4
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
-.|++.++++|+.+.
T Consensus 14 P~p~i~W~~~g~~~~ 28 (76)
T cd04978 14 PQPTITWRLNGVPIE 28 (76)
T ss_pred CCCEEEEEECCEECC
Confidence 367899999997654
No 306
>KOG1731|consensus
Probab=43.24 E-value=34 Score=23.15 Aligned_cols=38 Identities=3% Similarity=0.056 Sum_probs=23.9
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEeeee-CCCHHHHHHHHH
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVEQFS-GANFDKLRSTVL 66 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~-g~~~~~l~~~i~ 66 (70)
.+.. +++...|+..++++|+...-.. +.+.+...+.|+
T Consensus 228 ~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~ 266 (606)
T KOG1731|consen 228 PLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKID 266 (606)
T ss_pred cccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHH
Confidence 3445 8999999999999997543322 224433333443
No 307
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=43.19 E-value=27 Score=15.88 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=10.5
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.|++.++++|..+
T Consensus 13 ~p~v~W~k~g~~~ 25 (71)
T cd05723 13 TPTVKWVKNGDMV 25 (71)
T ss_pred CCEEEEEECCeEC
Confidence 5789999998765
No 308
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=43.19 E-value=25 Score=17.42 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=28.7
Q ss_pred cCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 24 DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
++..+++++++..++..+.+ .+|.....+.-. +.+.+.+.+++
T Consensus 29 d~l~~~ak~~ga~gL~~ikv-~~~~~~s~i~kfl~e~~~~~l~~~ 72 (95)
T PF02938_consen 29 DKLEEFAKKFGAKGLAWIKV-EEGELKSPIAKFLSEEELKALIER 72 (95)
T ss_dssp CCCCCHHHHCCHCHCCCEEE-STCEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceeeeE-cCCcccCcccccCCHHHHHHHHHH
Confidence 34457889999999987544 446555555555 66777666654
No 309
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=43.12 E-value=23 Score=15.92 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=15.5
Q ss_pred EeCcCcHHHHHHcCCCccCE
Q psy11066 21 VDVDESEDIAMAYDISSMPT 40 (70)
Q Consensus 21 vd~~~~~~~~~~~~i~~~Pt 40 (70)
|..+.-...|.++||..+|.
T Consensus 27 v~~T~LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 27 VSVTTLKRRCRRLGIPRWPY 46 (52)
T ss_pred CCHHHHHHHHHHcCCCCCCc
Confidence 44555677899999999995
No 310
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=42.56 E-value=29 Score=15.61 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.3
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.|++.++++|..+
T Consensus 12 ~p~i~W~k~g~~~ 24 (69)
T cd05746 12 EPTITWNKDGVQV 24 (69)
T ss_pred CCEEEEEECCEEC
Confidence 5788888998765
No 311
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=42.12 E-value=35 Score=15.10 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=18.6
Q ss_pred chHHHHHHHhhCCC--cEEEEEeCcC
Q psy11066 2 SLVMLQELASEFPD--VVFLKVDVDE 25 (70)
Q Consensus 2 ~~p~~~~~~~~~~~--i~~~~vd~~~ 25 (70)
++..++.+..+|+. +.++......
T Consensus 4 LM~~iD~iN~r~G~~~i~~a~~g~~~ 29 (52)
T PF13438_consen 4 LMQAIDAINRRFGRGTIRLASQGFRR 29 (52)
T ss_pred HHHHHHHHHHhcCCCEEEEeECCCCc
Confidence 56788999999974 8888777654
No 312
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=42.02 E-value=75 Score=18.91 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=25.7
Q ss_pred cCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 24 DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
+-.++.+++++|.-+|--+.+.+..-.+. ...+.+++.+.+.
T Consensus 10 dl~~~~~~~~~I~vvPl~I~~~~~~y~D~-~~i~~~~~y~~~~ 51 (275)
T TIGR00762 10 DLPPELIEEYGITVVPLTVIIDGKTYRDG-VDITPEEFYEKLK 51 (275)
T ss_pred CCCHHHHHHcCCEEEEEEEEECCEEeecC-CCCCHHHHHHHHH
Confidence 33467789999999999988853322221 1125555555543
No 313
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=41.98 E-value=88 Score=20.00 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=22.3
Q ss_pred CcEEEEEeCcCcHHHHH---H---------cCCCccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDESEDIAM---A---------YDISSMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~~~---~---------~~i~~~Pt~~~~~~g~~ 49 (70)
++.+..+|+++.+...+ + .|..++|++++ +|+.
T Consensus 26 gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ 70 (410)
T PRK12759 26 DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH 70 (410)
T ss_pred CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE
Confidence 58888899887653222 2 36789999864 5643
No 314
>PRK14429 acylphosphatase; Provisional
Probab=41.96 E-value=46 Score=16.43 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=20.0
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 65 (70)
..+|.++++.++-.= ..+|++.....|. .+.|.+++
T Consensus 22 ~~~A~~~gl~G~V~N--~~dG~Vei~~qG~-~~~i~~f~ 57 (90)
T PRK14429 22 LTKARALGVTGYVTN--CEDGSVEILAQGS-DPAVDNLI 57 (90)
T ss_pred HHHHHHhCCEEEEEE--CCCCeEEEEEEeC-HHHHHHHH
Confidence 456788888773211 1456666666674 33344443
No 315
>KOG2868|consensus
Probab=41.57 E-value=90 Score=19.67 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=28.5
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEe
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVK 45 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 45 (70)
.|.++++...-+.+.++..|...+. +.+-+|.| ||++|+
T Consensus 24 DP~ik~Ild~ashva~Y~fd~~~~e--WnKtdiEG--tffvY~ 62 (335)
T KOG2868|consen 24 DPYIKSILDVASHVALYTFDFGANE--WNKTDIEG--TFFVYK 62 (335)
T ss_pred CHHHHHHHhhccceeEEEeccccch--hhhcccee--EEEEEE
Confidence 4666777666666889999988665 56667777 778885
No 316
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=41.56 E-value=33 Score=15.68 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=11.6
Q ss_pred CccCEEEEEeCCeEE
Q psy11066 36 SSMPTFVFVKSTAKV 50 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~ 50 (70)
.-.|++.++++|+.+
T Consensus 13 ~P~P~v~W~k~g~~l 27 (69)
T cd05739 13 APMPYVKWMKGGEEL 27 (69)
T ss_pred cCCCEEEEEECCEEC
Confidence 356889999998765
No 317
>PF13926 DUF4211: Domain of unknown function (DUF4211)
Probab=41.54 E-value=59 Score=17.60 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=30.5
Q ss_pred chHHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccC-EEEEEeCCe
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMP-TFVFVKSTA 48 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P-t~~~~~~g~ 48 (70)
+.+.|.+..+.++.+.+...... ....|+..+..+.| |+.+.-.|+
T Consensus 92 W~~~f~~aL~~~P~l~v~~~~~~-~~~~C~AC~~~~~~a~~~i~l~G~ 138 (153)
T PF13926_consen 92 WKPDFKKALETYPELSVTEISYH-TGPSCDACNRSGHPATFRIRLSGK 138 (153)
T ss_pred CCHHHHHHHHHCCCeEEEecCCC-CCCcCcccCCCCCCceEEEEeCCC
Confidence 44667777778888777777653 23336666777777 777766663
No 318
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=41.23 E-value=73 Score=18.51 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=9.5
Q ss_pred CCccCEEEEE-eCC
Q psy11066 35 ISSMPTFVFV-KST 47 (70)
Q Consensus 35 i~~~Pt~~~~-~~g 47 (70)
-...|++++| -+|
T Consensus 101 ~~~~P~~VlFiTDG 114 (200)
T PF10138_consen 101 PSDAPALVLFITDG 114 (200)
T ss_pred CCCCCeEEEEEecC
Confidence 4457998888 567
No 319
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=41.22 E-value=49 Score=16.57 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=15.9
Q ss_pred HHHHHcCCCccCEEEEEeCC
Q psy11066 28 DIAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g 47 (70)
.+++..+...+|.+.|+.+.
T Consensus 73 ~l~~~l~lr~~P~L~F~~D~ 92 (104)
T PF02033_consen 73 ELAKRLNLRRVPELRFVYDD 92 (104)
T ss_dssp HHHHHTTSSSG-EEEEEEST
T ss_pred HHHhhcCCCcCCEEEEEECC
Confidence 36888999999999998654
No 320
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=41.19 E-value=29 Score=17.10 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=11.8
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
--|++.++++|+.+.
T Consensus 28 p~p~v~W~kdg~~l~ 42 (98)
T cd05762 28 QPITCTWMKFRKQIQ 42 (98)
T ss_pred CCCceEEEECCEEec
Confidence 357899999998764
No 321
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=41.06 E-value=40 Score=15.52 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=19.5
Q ss_pred CccCEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 36 SSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
..-|++.+..++ .+.+. +.+++.+.+++
T Consensus 48 ~~~P~v~i~~~~----~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 48 GLAPVVVVYPDG----VWYGRVTPEDVEEIVEE 76 (77)
T ss_pred cCCCEEEEeCCC----eEEccCCHHHHHHHHHh
Confidence 456888888644 35555 88888887765
No 322
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=40.89 E-value=29 Score=16.08 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=11.3
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|..+
T Consensus 11 P~P~v~W~k~g~~l 24 (77)
T cd05733 11 PPPTFSWTRNGTHF 24 (77)
T ss_pred CCCeEEEEECCeEC
Confidence 47889999998765
No 323
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=40.14 E-value=35 Score=20.43 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEE--eeeeCC-CHHHHHHHHHhh
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKV--EQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~--~~~~g~-~~~~l~~~i~~~ 68 (70)
-++++.|+++.+=|+==|.-|+.+ .++.|+ +..+|.+.++++
T Consensus 109 Ld~a~e~g~~~IyTLGGy~vGkl~eep~VlGA~ts~eLi~~lke~ 153 (258)
T COG2047 109 LDIAKEFGARMIYTLGGYGVGKLVEEPRVLGAVTSKELIEELKEH 153 (258)
T ss_pred HHHHHHcCCcEEEEecCcccCcccCCceeEEecCCHHHHHHHHHc
Confidence 357889999988777777667655 467788 888888888764
No 324
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=39.87 E-value=39 Score=17.74 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=19.0
Q ss_pred CcCcHHHHHHcCCCccCEEEEE-eCCeEEeee
Q psy11066 23 VDESEDIAMAYDISSMPTFVFV-KSTAKVEQF 53 (70)
Q Consensus 23 ~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~ 53 (70)
.+...++.+.-.+-++|++.+. .+|+.+.+-
T Consensus 8 ~edl~ql~kas~~l~l~dl~~~~~~gkivv~~ 39 (112)
T PF09116_consen 8 AEDLQQLMKASRTLGLPDLCFVNDDGKIVVTD 39 (112)
T ss_dssp HHHHHHHHHHHHHCT--EEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCEEEEEc
Confidence 3344555556667789999999 577766554
No 325
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=39.64 E-value=32 Score=16.49 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.4
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
-.|++.++++|+.+.
T Consensus 29 P~p~v~W~k~g~~l~ 43 (92)
T cd05737 29 PDPEVSWLKNDQALA 43 (92)
T ss_pred CCCeEEEEECCEECc
Confidence 457899999997653
No 326
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=39.59 E-value=49 Score=16.05 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=21.8
Q ss_pred CcEEEEEeCcCcHHH----HHHcCCCccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDESEDI----AMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~ 49 (70)
++.+..+|.++.+++ .+..+-..+|++ |.+|+.
T Consensus 37 ~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 37 GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 377777787665543 444577899997 346753
No 327
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=39.57 E-value=54 Score=16.59 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=33.2
Q ss_pred HHHHHHhhCC-CcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeE-------EeeeeCC--C-HHHHHHHHHh
Q psy11066 5 MLQELASEFP-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK-------VEQFSGA--N-FDKLRSTVLA 67 (70)
Q Consensus 5 ~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-------~~~~~g~--~-~~~l~~~i~~ 67 (70)
.|.+++..+. +..|+... ...+...+++. .|.+++|+.-+. ...+.|. + .+.|..||..
T Consensus 37 ~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 37 LYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 4566676663 37664332 23566777765 577777743321 2333433 3 3449999875
No 328
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=39.48 E-value=33 Score=16.74 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=11.3
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.+++||+.+.
T Consensus 16 ~~~~~W~~dg~~i~ 29 (85)
T cd05853 16 DIVFTWSFNGHLID 29 (85)
T ss_pred CcEEEEEECCEECc
Confidence 46788889998875
No 329
>PRK13816 ribosome-binding factor A; Provisional
Probab=39.24 E-value=63 Score=17.27 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=16.2
Q ss_pred HHHHcCCCccCEEEEEeCC
Q psy11066 29 IAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 29 ~~~~~~i~~~Pt~~~~~~g 47 (70)
++++.++..+|.+.|+.+.
T Consensus 85 L~krl~lR~~PeL~F~~D~ 103 (131)
T PRK13816 85 LSRRIKTRITPRLRFHYDK 103 (131)
T ss_pred HHhhcCCeECCEEEEEECC
Confidence 5678899999999999765
No 330
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=38.99 E-value=33 Score=16.19 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.0
Q ss_pred ccCEEEEEeCCeEEee
Q psy11066 37 SMPTFVFVKSTAKVEQ 52 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~~ 52 (70)
-.|++.++++|+.+..
T Consensus 29 P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 29 PTPTIQWLKNGQPLET 44 (100)
T ss_pred CCCEEEEEECCEECcc
Confidence 4577999999987643
No 331
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=38.82 E-value=35 Score=15.55 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=10.8
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|+.+
T Consensus 15 P~p~i~W~k~g~~~ 28 (74)
T cd05745 15 PQPVIAWTKGGSQL 28 (74)
T ss_pred cCCEEEEEECCEEC
Confidence 35788899999765
No 332
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=38.51 E-value=35 Score=16.32 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.8
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
-.|++.++++|+.+.
T Consensus 23 P~P~v~W~k~~~~i~ 37 (86)
T cd05894 23 PAPTVTWSRGDKAFT 37 (86)
T ss_pred CCCeEEEEECCEECc
Confidence 467899999997764
No 333
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=38.51 E-value=36 Score=19.95 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=17.1
Q ss_pred chHHHHHHHhhCCCcEEEEEeC
Q psy11066 2 SLVMLQELASEFPDVVFLKVDV 23 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~ 23 (70)
+.+.+.+++++||+..|+-+|.
T Consensus 68 ~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 68 FMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred hhHHHHHHHHHCCCCEEEECCC
Confidence 4567788888888888887765
No 334
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.62 E-value=92 Score=18.64 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=27.3
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeee
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQF 53 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 53 (70)
|+..+..++++++. +.++-=|..- |..|. -.++.+++|+.+.+-
T Consensus 174 iMk~Lrrla~el~KtiviVlHDINf----AS~Ys----D~IVAlK~G~vv~~G 218 (252)
T COG4604 174 IMKILRRLADELGKTIVVVLHDINF----ASCYS----DHIVALKNGKVVKQG 218 (252)
T ss_pred HHHHHHHHHHHhCCeEEEEEecccH----HHhhh----hheeeecCCEEEecC
Confidence 56788899999987 4443333332 33332 236788999887653
No 335
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=37.38 E-value=50 Score=15.54 Aligned_cols=25 Identities=4% Similarity=0.197 Sum_probs=16.9
Q ss_pred EEEeCC-eEEeeeeCC--CHHHHHHHHH
Q psy11066 42 VFVKST-AKVEQFSGA--NFDKLRSTVL 66 (70)
Q Consensus 42 ~~~~~g-~~~~~~~g~--~~~~l~~~i~ 66 (70)
.+.+.| +.+.+-..+ +.+++++.|.
T Consensus 34 ~y~~~g~~~~~rsF~YsLSR~DvE~Ai~ 61 (63)
T PF11341_consen 34 RYLQSGPQDIQRSFPYSLSREDVEAAIF 61 (63)
T ss_pred EEccCCCcccEEeccCcCCHHHHHHHHh
Confidence 334566 666666665 8899988764
No 336
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=37.27 E-value=27 Score=15.98 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=10.7
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.+|++|+.+.
T Consensus 13 ~~~~~W~~~g~~i~ 26 (76)
T cd05895 13 SLRFKWFKNGKEIG 26 (76)
T ss_pred CCceEEEECCcccc
Confidence 46788899997764
No 337
>PRK13669 hypothetical protein; Provisional
Probab=37.27 E-value=56 Score=16.05 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhhc
Q psy11066 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANR 69 (70)
Q Consensus 6 ~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 69 (70)
++.+ ++++++.+...+|...= |.-+.= .+.+-||+.+ .|.+.++|.+.|.+.+
T Consensus 20 ~~~L-e~dP~~dVie~gCls~C------G~C~~~-~FAlVng~~V---~a~t~eeL~~kI~~~i 72 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYC------GICSEG-LFALVNGEVV---EGETPEELVENIYAHL 72 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhC------cCcccC-ceEEECCeEe---ecCCHHHHHHHHHHHH
Confidence 4445 56788888888775421 222211 2445578544 4557777777776543
No 338
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.88 E-value=45 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEE
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFV 44 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 44 (70)
|-+|++....+++.|..-.. ...++.+++.-.++|++.+-
T Consensus 60 ~n~E~ll~l~PDlii~~~~~-~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVALKPDLVILYGGF-QAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhccCCCEEEEecCC-CchhHHHHHHHcCCCEEEeC
Confidence 55777888888877663222 12235566666778987763
No 339
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=36.79 E-value=89 Score=18.64 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=24.0
Q ss_pred CcHHHHHHcCCCccCEEEEEeCCeEEeeeeC-C-CHHHHHHHHH
Q psy11066 25 ESEDIAMAYDISSMPTFVFVKSTAKVEQFSG-A-NFDKLRSTVL 66 (70)
Q Consensus 25 ~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~i~ 66 (70)
-.++..++++|.-+|-.+.+.+ +. ...| . +.+++.+.+.
T Consensus 12 l~~~~~~~~~i~vvPl~i~~~~-~~--y~D~~~i~~~efy~~l~ 52 (280)
T PF02645_consen 12 LPPELAEEYGIYVVPLNIIIDG-KE--YRDGVDISPEEFYEKLR 52 (280)
T ss_dssp --HHHHHHTTEEEE--EEEETT-EE--EETTTTSCHHHHHHHHH
T ss_pred CCHHHHHhCCeEEEeEEEecCC-eE--EecCCCCCHHHHHHHHH
Confidence 3467889999999999998854 22 2223 2 6777766664
No 340
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=36.35 E-value=32 Score=16.84 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=16.8
Q ss_pred HHHHHcCCC-ccCEEEEEeCCeEEe
Q psy11066 28 DIAMAYDIS-SMPTFVFVKSTAKVE 51 (70)
Q Consensus 28 ~~~~~~~i~-~~Pt~~~~~~g~~~~ 51 (70)
..++.+++. ...++++..+|.++.
T Consensus 29 K~~~~l~~~~~~~~lvL~eDGT~Vd 53 (78)
T PF02017_consen 29 KACDKLQLPEEPVRLVLEEDGTEVD 53 (78)
T ss_dssp HHHHHHT-SSSTCEEEETTTTCBES
T ss_pred HHHHHhCCCCcCcEEEEeCCCcEEc
Confidence 457888888 555677778998775
No 341
>COG4592 FepB ABC-type Fe2+-enterobactin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.92 E-value=64 Score=19.81 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCC
Q psy11066 4 VMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKST 47 (70)
Q Consensus 4 p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 47 (70)
|-++.++.+.++ +.+-....|...++-.+...- .||+++-.+.
T Consensus 106 p~~eaVaaq~PDLiviSatG~DSal~lydqLsAi-aPTlvinYdd 149 (319)
T COG4592 106 PDIEAVAAQMPDLIVISATGADSALALYDQLSAI-APTLVINYDD 149 (319)
T ss_pred CcHHHHHhhCCCEEEEEccCCccHHHHHHHHhhh-cCEEEEecCc
Confidence 556777788888 444444555544444444433 8998887554
No 342
>PRK14438 acylphosphatase; Provisional
Probab=35.74 E-value=61 Score=16.04 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=20.9
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.++++.++-.= ..+|.+.....|. .++|.++++
T Consensus 23 ~~~A~~~gl~G~V~N--~~dG~Vei~~qG~-~~~i~~f~~ 59 (91)
T PRK14438 23 QQTAQRLNVSGWVKN--LPNGSVQGCFEGE-ETDVAALID 59 (91)
T ss_pred HHHHHHcCCEEEEEE--CCCCEEEEEEEEC-HHHHHHHHH
Confidence 466888888874311 1467666666674 333444443
No 343
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=35.68 E-value=63 Score=16.23 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=24.0
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~ 66 (70)
...|.++++.++.-- ..||.+-.-..|. +.+.+.+||.
T Consensus 24 ~~~A~~lgl~G~V~N--~~DGsVeiva~G~~~~v~~~~~~l~ 63 (92)
T COG1254 24 RSEALRLGLTGWVKN--LDDGSVEIVAEGPDEAVEKFIEWLR 63 (92)
T ss_pred HHHHHHCCCEEEEEE--CCCCeEEEEEEcCHHHHHHHHHHHH
Confidence 566888998884332 2688776667776 3344555554
No 344
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=35.61 E-value=40 Score=16.88 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=12.8
Q ss_pred CccCEEEEEeCCeEEe
Q psy11066 36 SSMPTFVFVKSTAKVE 51 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~~ 51 (70)
..-|++.+|++|+++.
T Consensus 27 ~~~~~v~WYKd~~~l~ 42 (95)
T cd05897 27 RTDVELQWYKDSVLLD 42 (95)
T ss_pred CCCCcEEEccCCEECc
Confidence 4668999999998753
No 345
>PRK14430 acylphosphatase; Provisional
Probab=35.53 E-value=62 Score=16.10 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=23.7
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~ 66 (70)
...|.++++.++-. =..+|++.....|. +.+.+..+|.
T Consensus 24 ~~~A~~lgl~G~Vr--N~~dGsVei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14430 24 ADAADDLGLGGWVR--NRADGTVEVMASGTVRQLEALRAWME 63 (92)
T ss_pred HHHHHHhCCEEEEE--ECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 56788999888431 12567777777785 3345555553
No 346
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=35.47 E-value=42 Score=15.27 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=10.0
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.|++.++++|+.+
T Consensus 12 ~p~v~W~k~~~~l 24 (76)
T cd05736 12 LPRLTWLKNGMDI 24 (76)
T ss_pred CCEEEEEECCEEC
Confidence 4688888998764
No 347
>PRK14449 acylphosphatase; Provisional
Probab=35.40 E-value=61 Score=15.97 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=21.5
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.++++.++ +.=..+|.+.....|. .+.+.+++.
T Consensus 23 ~~~A~~lgl~G~--V~N~~dG~Vei~~~G~-~~~v~~f~~ 59 (90)
T PRK14449 23 YQKAVSLGITGY--AENLYDGSVEVVAEGD-EENIKELIN 59 (90)
T ss_pred HHHHHHcCCEEE--EEECCCCeEEEEEEeC-HHHHHHHHH
Confidence 456788888885 2222466666666674 344444444
No 348
>KOG0324|consensus
Probab=35.12 E-value=40 Score=19.82 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=26.6
Q ss_pred chHHHHHHHhhCCC--cEEEEEeCcC-cHHHHHHcCCCccCE
Q psy11066 2 SLVMLQELASEFPD--VVFLKVDVDE-SEDIAMAYDISSMPT 40 (70)
Q Consensus 2 ~~p~~~~~~~~~~~--i~~~~vd~~~-~~~~~~~~~i~~~Pt 40 (70)
+..++++++++|.+ -....=||.. +..+|....-..+|.
T Consensus 90 v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~ 131 (214)
T KOG0324|consen 90 VRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPS 131 (214)
T ss_pred HHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccH
Confidence 35678999999965 5566667766 356667666666664
No 349
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=34.84 E-value=89 Score=17.66 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=25.0
Q ss_pred HcCCCccCE-EEEE-eCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 32 AYDISSMPT-FVFV-KSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 32 ~~~i~~~Pt-~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
.|+...--+ +++. ++|++.....|. +.+++...|.
T Consensus 140 AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 140 AWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVID 177 (184)
T ss_pred hhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHH
Confidence 566554444 3333 789999999999 9888776664
No 350
>PRK14451 acylphosphatase; Provisional
Probab=34.45 E-value=64 Score=15.93 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=21.1
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
...|.++++.++-.= ..+|++.....| +.+.+.+++.
T Consensus 23 ~~~A~~~gl~G~V~N--~~dG~Vei~~qG-~~~~i~~f~~ 59 (89)
T PRK14451 23 KKLAEQLMISGWARN--LADGRVEVFACG-KEDKLEEFYT 59 (89)
T ss_pred HHHHHHhCCEEEEEE--CCCCCEEEEEEE-CHHHHHHHHH
Confidence 456888888874211 146766666667 4444444443
No 351
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=34.35 E-value=46 Score=15.39 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=10.1
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.|++.++++|+.+
T Consensus 15 ~p~v~W~k~~~~l 27 (73)
T cd05852 15 KPKFSWSKGTELL 27 (73)
T ss_pred CCEEEEEeCCEec
Confidence 4778999988754
No 352
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=34.31 E-value=54 Score=19.77 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=15.7
Q ss_pred hHHHHHHHhhCCCcEEEEEeCcC
Q psy11066 3 LVMLQELASEFPDVVFLKVDVDE 25 (70)
Q Consensus 3 ~p~~~~~~~~~~~i~~~~vd~~~ 25 (70)
...+.+++++||++.|+-+|...
T Consensus 73 ~~~~~~vA~~yPd~~F~~~d~~~ 95 (306)
T PF02608_consen 73 SDALQEVAKEYPDTKFIIIDGYI 95 (306)
T ss_dssp HHHHHHHHTC-TTSEEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEecCc
Confidence 45677888888888888887643
No 353
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=33.95 E-value=48 Score=14.34 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=14.8
Q ss_pred eCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 45 KSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 45 ~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
++|+.+.--......+|..||+.+
T Consensus 12 ~tG~~l~g~~aP~~~~l~~WL~~~ 35 (45)
T smart00592 12 ETGKKLTGDDAPKAKDLERWLEEN 35 (45)
T ss_pred CCccEeccccCCcHHHHHHHHhcC
Confidence 355444333333678899998764
No 354
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.81 E-value=67 Score=15.93 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=21.5
Q ss_pred CcEEEEEeCcCcHHH----HHHcCCCccCEEEEEeCCeE
Q psy11066 15 DVVFLKVDVDESEDI----AMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 15 ~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~ 49 (70)
++.+..+|.+++++. .+..+...+|.++ -+|+.
T Consensus 41 ~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~~ 77 (97)
T TIGR00365 41 GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGEF 77 (97)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCEE
Confidence 477788888765543 3445677888874 56643
No 355
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=33.60 E-value=42 Score=17.03 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=12.0
Q ss_pred CCccCEEEEEeCCeE
Q psy11066 35 ISSMPTFVFVKSTAK 49 (70)
Q Consensus 35 i~~~Pt~~~~~~g~~ 49 (70)
+.+=|++.++++|..
T Consensus 22 v~~~P~v~I~r~g~~ 36 (95)
T PF12992_consen 22 VNGKPDVTIYRNGGS 36 (95)
T ss_pred cCCCCCEEEEECCCe
Confidence 567799999998853
No 356
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=1.1e+02 Score=18.61 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCcE--------EEEEeCcCcHHHHHHcCCCccCEEEEEe
Q psy11066 4 VMLQELASEFPDVV--------FLKVDVDESEDIAMAYDISSMPTFVFVK 45 (70)
Q Consensus 4 p~~~~~~~~~~~i~--------~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 45 (70)
...+++.+.+++++ +..+|.........+-.--++|++.+..
T Consensus 138 re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 138 RELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred HHHHHHHHhhcchhhccCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 34455555554332 5567877776666666668999999995
No 357
>KOG3360|consensus
Probab=33.33 E-value=75 Score=16.34 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=28.7
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHHh
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVLA 67 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~~ 67 (70)
.+-|++.|++++-.= -++|....++.|. ..+.+..||..
T Consensus 28 ~~~a~~lGlrGWv~N--t~~GtvkG~leGp~~~vd~mk~wl~~ 68 (98)
T KOG3360|consen 28 LDEAKKLGLRGWVMN--TSEGTVKGQLEGPPEKVDEMKEWLLT 68 (98)
T ss_pred HHHHHhhcceEEEEe--cCCceEEEEEeCCHHHHHHHHHHHHh
Confidence 345888999984221 1678999999998 45788888874
No 358
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=33.12 E-value=55 Score=20.07 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=20.3
Q ss_pred HcCCCccCEEEEEe-CCeEEeeeeCC--CHHHHHHHHHh
Q psy11066 32 AYDISSMPTFVFVK-STAKVEQFSGA--NFDKLRSTVLA 67 (70)
Q Consensus 32 ~~~i~~~Pt~~~~~-~g~~~~~~~g~--~~~~l~~~i~~ 67 (70)
.++|..+||+.+-. .|.-. ..|. +.+.|.++++.
T Consensus 28 G~~V~~vpTV~fSnHtgyg~--~~g~v~~~e~l~~~l~~ 64 (281)
T COG2240 28 GLDVWAVPTVQFSNHTGYGK--WTGIVMPPEQLADLLNG 64 (281)
T ss_pred CCceeeeceEEecCCCCCCC--CCCcCCCHHHHHHHHHH
Confidence 44566899998874 23222 2343 66777776654
No 359
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=33.01 E-value=47 Score=15.84 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=10.9
Q ss_pred cC-EEEEEeCCeEEe
Q psy11066 38 MP-TFVFVKSTAKVE 51 (70)
Q Consensus 38 ~P-t~~~~~~g~~~~ 51 (70)
.| ++.++++|+.+.
T Consensus 27 ~P~~I~W~k~g~~l~ 41 (81)
T cd05749 27 EPVEILWWQGGSPLG 41 (81)
T ss_pred CCeEEEEEECCEECC
Confidence 35 699999998764
No 360
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=32.89 E-value=30 Score=16.14 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=10.7
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.++++|+.+.
T Consensus 22 ~~~v~W~k~g~~l~ 35 (79)
T cd04973 22 VQSINWTKDGVQLG 35 (79)
T ss_pred CceEEEeeCCcCCC
Confidence 47889999997653
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=32.87 E-value=49 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.4
Q ss_pred cEEEEEeCcCcHHHHHHcCCCccCEE
Q psy11066 16 VVFLKVDVDESEDIAMAYDISSMPTF 41 (70)
Q Consensus 16 i~~~~vd~~~~~~~~~~~~i~~~Pt~ 41 (70)
-.+..||+|.+.+++..+|+..-|+.
T Consensus 30 ~~VLvVDaDpd~nL~~~LGve~~~~~ 55 (255)
T COG3640 30 YNVLVVDADPDSNLPEALGVEEPMKY 55 (255)
T ss_pred ceEEEEeCCCCCChHHhcCCCCCCcc
Confidence 77889999999999999998765443
No 362
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=32.72 E-value=49 Score=15.30 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.4
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
..|++.++++|+.+.
T Consensus 25 p~p~i~W~k~g~~~~ 39 (86)
T cd05724 25 PEPTVSWRKDGQPLN 39 (86)
T ss_pred CCCEEEEEECCEECC
Confidence 467899999987643
No 363
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=32.33 E-value=15 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=0.0
Q ss_pred cHHHHHHcCCCccCEEEEEeCCe
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTA 48 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~ 48 (70)
...+...|++.++|+.++=|.+.
T Consensus 8 s~~~~~~~~v~g~P~~~vNR~~~ 30 (184)
T PF11551_consen 8 SSALMKQWGVSGYPSAMVNRKGG 30 (184)
T ss_dssp -----------------------
T ss_pred hhcccccccCCCCCeEEEECCCc
Confidence 34567889999999988876543
No 364
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=32.11 E-value=56 Score=18.59 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=11.8
Q ss_pred ccCEEEEE--eCCeEEeeeeC
Q psy11066 37 SMPTFVFV--KSTAKVEQFSG 55 (70)
Q Consensus 37 ~~Pt~~~~--~~g~~~~~~~g 55 (70)
..||++++ ++|+.+++..-
T Consensus 72 n~ptL~~IYD~~G~lLW~qr~ 92 (180)
T PF08918_consen 72 NSPTLVLIYDENGKLLWRQRD 92 (180)
T ss_dssp T-SEEEEEEETTS-EEEESS-
T ss_pred CCCeEEEEEcCCCcEEEecCc
Confidence 56887666 58999887643
No 365
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=32.00 E-value=51 Score=15.98 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=11.6
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
-.|++.++++|+.+.
T Consensus 32 P~p~i~W~~~g~~l~ 46 (94)
T cd05850 32 PPATYRWKMNGTEIK 46 (94)
T ss_pred CCCEEEEEECCEECc
Confidence 357899999998763
No 366
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.65 E-value=80 Score=16.16 Aligned_cols=52 Identities=8% Similarity=-0.003 Sum_probs=28.3
Q ss_pred EEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhhc
Q psy11066 18 FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANR 69 (70)
Q Consensus 18 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~~ 69 (70)
-+.||..++..+...-+..+-+-.+-+........+.+.+.++..+|+..+.
T Consensus 50 ~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 50 QGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred ceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 4455555544333222333333333344444556666668999999987653
No 367
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=31.49 E-value=1.5e+02 Score=19.32 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCE---EEEEeCCeEEeeeeCCCHHHHHHH
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPT---FVFVKSTAKVEQFSGANFDKLRST 64 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt---~~~~~~g~~~~~~~g~~~~~l~~~ 64 (70)
+.+.++.++|++..+..+-.+.. .-|..++|. -+-+-+|+.-..+.|++.++|.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~t~d~~-----~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~ 72 (427)
T cd06105 14 ARIKKFRKEHGKTVVGEVTVDMV-----YGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKL 72 (427)
T ss_pred HHHHHHHHHcCCcceeeeecCcc-----cCCCCCceecceeceeEcCCCCeEECCccHHHHHhh
Confidence 56777888898877777766632 123444444 555656655347899988887654
No 368
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=31.46 E-value=63 Score=16.55 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.9
Q ss_pred CCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 46 STAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 46 ~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
+|.++..+.+. +.+.|.+||+..
T Consensus 2 ~~DVi~~~~~i~Nl~kl~~Fi~nv 25 (98)
T PF14275_consen 2 NNDVINKHGEIENLDKLDQFIENV 25 (98)
T ss_pred CCCEEEeCCeEEeHHHHHHHHHHH
Confidence 56666666566 888999998764
No 369
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=31.45 E-value=1.2e+02 Score=18.16 Aligned_cols=41 Identities=24% Similarity=0.118 Sum_probs=29.9
Q ss_pred cHHHHHHcCCCccCE--EEEE-eCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPT--FVFV-KSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt--~~~~-~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
..++-+.+++...-+ +.+. .+|+..+.-.|. +.+++..+.+
T Consensus 203 ~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 203 SDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred cHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 356678888887666 3333 578999999999 8888876654
No 370
>PF14466 DUF4425: Domain of unknown function (DUF4425) ; PDB: 2LGE_A 2LG7_A 3U6G_B 2LRG_A.
Probab=31.36 E-value=74 Score=17.00 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=8.6
Q ss_pred EEEEEeCCeEEee
Q psy11066 40 TFVFVKSTAKVEQ 52 (70)
Q Consensus 40 t~~~~~~g~~~~~ 52 (70)
|++.|++|+++.+
T Consensus 108 ~V~~y~DgkEV~~ 120 (121)
T PF14466_consen 108 TVIAYIDGKEVNR 120 (121)
T ss_dssp EEEEEETTCEEEE
T ss_pred EEEEEeCchhhhc
Confidence 3445788887754
No 371
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=30.89 E-value=42 Score=18.57 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=23.5
Q ss_pred cCCCccCEEEEEeCCeEE---------eeeeCC-CHHHHHHHHHhhc
Q psy11066 33 YDISSMPTFVFVKSTAKV---------EQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 33 ~~i~~~Pt~~~~~~g~~~---------~~~~g~-~~~~l~~~i~~~~ 69 (70)
.|-..+-..++|.+|..- ....|. +.+.+.+.+.+..
T Consensus 23 ~G~~~Vgs~Vvf~~G~~~k~~YR~f~i~~~~~~dDy~~M~Evl~RR~ 69 (155)
T PF08459_consen 23 QGSDTVGSMVVFENGKPDKSEYRRFNIKTVDGGDDYAAMREVLTRRF 69 (155)
T ss_dssp TTTCEEEEEEEEETTEE-GGG-EEEEEE--STT-HHHHHHHHHHHHH
T ss_pred CCcccEEEEEEEECCccChhhCceEecCCCCCCcHHHHHHHHHHHHH
Confidence 455677788999999652 233355 5677777776643
No 372
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=30.74 E-value=92 Score=16.61 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=22.0
Q ss_pred EEeCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 20 KVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 20 ~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
.+...-..++.++|++.++| ++.|..+.-+.|.
T Consensus 26 ~msa~LSkeLr~~y~ir~~~----IkkGD~V~VisG~ 58 (120)
T PRK01191 26 LMSAPLSKELREKYGIRSLP----VRKGDTVKVMRGD 58 (120)
T ss_pred HhcCccCHHHHHHhCCccce----EeCCCEEEEeecC
Confidence 34455567889999998875 4556565555554
No 373
>PRK11633 cell division protein DedD; Provisional
Probab=30.73 E-value=1e+02 Score=18.22 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=31.2
Q ss_pred cCcHHHHHHcCCCccCEEEEE---eCCeEEeeeeCC--CHHHHHHHHHhh
Q psy11066 24 DESEDIAMAYDISSMPTFVFV---KSTAKVEQFSGA--NFDKLRSTVLAN 68 (70)
Q Consensus 24 ~~~~~~~~~~~i~~~Pt~~~~---~~g~~~~~~~g~--~~~~l~~~i~~~ 68 (70)
++...+..++.-.|++.++.- .+|+...-+.|. +.+.+...+.++
T Consensus 161 ~~A~~l~~kL~~~G~~Ay~~~~~~~~G~~tRV~VGP~~sk~~ae~~~~~L 210 (226)
T PRK11633 161 DKVNEIVAKLRLSGYRVYTVPSTPVQGKITRIYVGPDASKDKLKGSLGEL 210 (226)
T ss_pred HHHHHHHHHHHHCCCeeEEEeeecCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 445667788888888887753 467666667887 777777666543
No 374
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=30.56 E-value=54 Score=15.74 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.4
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.++++|+.+.
T Consensus 28 ~p~i~W~k~g~~l~ 41 (95)
T cd05722 28 PPKIEWKKDGVLLN 41 (95)
T ss_pred CCEEEEEECCeECc
Confidence 68899999997664
No 375
>PRK14426 acylphosphatase; Provisional
Probab=30.48 E-value=78 Score=15.69 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=22.2
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~ 66 (70)
...|.++++.++- .=..+|.+.....|. ..+++.++|.
T Consensus 24 ~~~A~~~gl~G~V--~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (92)
T PRK14426 24 QHEALKLGLTGYA--KNLDDGSVEVVACGEEEQVEKLMEWLK 63 (92)
T ss_pred HHHHHHhCCEEEE--EECCCCcEEEEEEeCHHHHHHHHHHHh
Confidence 4668888888852 111467666666774 2344555543
No 376
>PRK14445 acylphosphatase; Provisional
Probab=30.47 E-value=77 Score=15.64 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=20.3
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
...|.++++.++-. =..+|.+.....|. .+.+.+++.
T Consensus 24 ~~~A~~~gl~G~V~--N~~dG~Vei~~qG~-~~~l~~f~~ 60 (91)
T PRK14445 24 DRAASELNLSGWVR--NLPDGTVEIEAQGS-SGMIDELIK 60 (91)
T ss_pred HHHHhhCCCEEEEE--ECCCCeEEEEEEEC-HHHHHHHHH
Confidence 45678888887321 11466666666674 333444443
No 377
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=30.45 E-value=31 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHHcCCCccCEEEEEeCCeE
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAK 49 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~ 49 (70)
+.-.++|+++.||+.+..+...
T Consensus 141 p~~Er~GitapptVmW~~dDei 162 (409)
T COG2461 141 PYIERRGITAPPTVMWVKDDEI 162 (409)
T ss_pred hHHHHcCCCCCCeeeeccCcHH
Confidence 4568999999999999977643
No 378
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=30.12 E-value=56 Score=13.93 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=15.5
Q ss_pred EEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 41 FVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+++-++|+........ ..+.+.+.+
T Consensus 24 v~It~~g~~~avlv~~~~y~~l~~~~ 49 (52)
T TIGR01552 24 VTITKRGRPVAVLVSAADYDRLQETL 49 (52)
T ss_pred EEEEECCcceEEEeeHHHHHHHHHHh
Confidence 4455778777777666 555555544
No 379
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=30.11 E-value=57 Score=15.55 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=10.6
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|..+
T Consensus 31 P~p~v~W~k~g~~l 44 (92)
T cd05747 31 PAPTVTWMREGQII 44 (92)
T ss_pred CCCEEEEEECCEEC
Confidence 35778999998764
No 380
>KOG1165|consensus
Probab=29.95 E-value=55 Score=21.11 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=26.8
Q ss_pred CCCccCEEEEE-eCCe---EEeeeeCCCHHHHHHHHHhh
Q psy11066 34 DISSMPTFVFV-KSTA---KVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 34 ~i~~~Pt~~~~-~~g~---~~~~~~g~~~~~l~~~i~~~ 68 (70)
+-.++|.+.+| ..|. .+...-|.+.++|-+|..+.
T Consensus 82 g~~GIP~vYYFGqeG~~NiLVidLLGPSLEDLFD~CgR~ 120 (449)
T KOG1165|consen 82 GTEGIPQVYYFGQEGKYNILVIDLLGPSLEDLFDLCGRR 120 (449)
T ss_pred CCCCCCceeeeccccchhhhhhhhhCcCHHHHHHHhcCc
Confidence 57799999999 5664 45667788999988887653
No 381
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=29.85 E-value=65 Score=14.54 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.4
Q ss_pred ccCEEEEEeCCeEEe
Q psy11066 37 SMPTFVFVKSTAKVE 51 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~ 51 (70)
-.|++.++++|+.+.
T Consensus 14 P~p~v~W~k~~~~~~ 28 (73)
T cd04969 14 PKPTISWSKGTELLT 28 (73)
T ss_pred CCCEEEEEECCEEcc
Confidence 357899999987653
No 382
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=29.70 E-value=78 Score=16.39 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=8.8
Q ss_pred EEEEEeCCeEEe
Q psy11066 40 TFVFVKSTAKVE 51 (70)
Q Consensus 40 t~~~~~~g~~~~ 51 (70)
|-++|+||+.+.
T Consensus 82 TplvF~n~~Lvg 93 (102)
T PF11399_consen 82 TPLVFKNGKLVG 93 (102)
T ss_pred EEEEEECCEEEE
Confidence 557888887764
No 383
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=29.54 E-value=21 Score=20.65 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCCccCEEEEEeCCeEEeeeeCCCHHHHHHH
Q psy11066 34 DISSMPTFVFVKSTAKVEQFSGANFDKLRST 64 (70)
Q Consensus 34 ~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 64 (70)
.++|+|...+-+.|=.+++..|...+.|...
T Consensus 72 ~v~Gi~y~~Le~~g~~iWe~~G~p~e~Ld~V 102 (202)
T PF09582_consen 72 SVSGIPYSLLEKAGFSIWESEGNPLEFLDYV 102 (202)
T ss_pred cccCccHHHHHHCCcEEEEECCCHHHHHHHH
Confidence 4789999888888999999999755554443
No 384
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=29.49 E-value=61 Score=15.39 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=11.5
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|..+
T Consensus 28 P~p~v~W~~~g~~~ 41 (90)
T cd04972 28 PLPKVEWIIAGLIV 41 (90)
T ss_pred CCCeEEEEECCEEc
Confidence 47899999999765
No 385
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=29.38 E-value=69 Score=14.71 Aligned_cols=25 Identities=12% Similarity=0.359 Sum_probs=17.9
Q ss_pred CEEEEEeCCeEEeeeeCC-CHHHHHH
Q psy11066 39 PTFVFVKSTAKVEQFSGA-NFDKLRS 63 (70)
Q Consensus 39 Pt~~~~~~g~~~~~~~g~-~~~~l~~ 63 (70)
+.+++.++|+....+... ..+.+.+
T Consensus 25 ~pv~It~~g~~~~vli~~~~ye~l~~ 50 (75)
T PF02604_consen 25 EPVIITKNGKPVAVLISVEDYERLQE 50 (75)
T ss_dssp -EEEEEETTEEEEEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCeecccHHHHHHHHH
Confidence 447888999998887776 6666655
No 386
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.35 E-value=1e+02 Score=17.67 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHc-CCCccCEEEEE
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAY-DISSMPTFVFV 44 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~-~i~~~Pt~~~~ 44 (70)
|-+|++....+++.+..-..... ...+++ .+.++|++.+-
T Consensus 65 ~n~E~i~~l~PDLIi~~~~~~~~-~~~~~l~~~~gipvv~~~ 105 (262)
T cd01147 65 PNYEKIAALKPDVVIDVGSDDPT-SIADDLQKKTGIPVVVLD 105 (262)
T ss_pred CCHHHHHhcCCCEEEEecCCccc-hhHHHHHHhhCCCEEEEe
Confidence 56788888888976664322221 122333 24678987765
No 387
>PRK14447 acylphosphatase; Provisional
Probab=29.27 E-value=84 Score=15.69 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHcCCCccCEEEEEeCC-eEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKST-AKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.++++.++-.=. .+| .+.....| +.+.|.++++
T Consensus 24 ~~~A~~~gl~G~V~N~--~dG~~Vei~~qG-~~~~l~~f~~ 61 (95)
T PRK14447 24 KEVANRNGVRGWVRNR--SDGRTVEAVLEG-PRDAVLKVIE 61 (95)
T ss_pred HHHHhhcCeEEEEEEC--CCCCEEEEEEEe-CHHHHHHHHH
Confidence 4567888888743211 467 35555566 4444444443
No 388
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=29.18 E-value=61 Score=15.26 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=10.9
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
..|++.++++|+.+
T Consensus 27 p~p~v~W~k~g~~~ 40 (85)
T cd05728 27 PRPAYRWLKNGQPL 40 (85)
T ss_pred CCCEEEEEECCEEC
Confidence 36788888998765
No 389
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=28.88 E-value=80 Score=19.71 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=17.7
Q ss_pred chHHHHHHHhhCCCcEEEEEeC
Q psy11066 2 SLVMLQELASEFPDVVFLKVDV 23 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~ 23 (70)
+.-.+++++.++|++.|+-+|.
T Consensus 108 ~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 108 FSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred hhhHHHHHHHHCCCCEEEEecC
Confidence 3456788888999999998886
No 390
>PRK14420 acylphosphatase; Provisional
Probab=28.87 E-value=83 Score=15.46 Aligned_cols=38 Identities=11% Similarity=-0.091 Sum_probs=22.3
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHh
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLA 67 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 67 (70)
..+|.++++.++- .=..+|.+.....|. .+.|.++++.
T Consensus 22 ~~~A~~~gl~G~V--~N~~dG~Vei~~qG~-~~~i~~f~~~ 59 (91)
T PRK14420 22 QMEADKRKLTGWV--KNRDDGTVEIEAEGP-EEALQLFLDA 59 (91)
T ss_pred HHHHHHcCCEEEE--EECCCCcEEEEEEEC-HHHHHHHHHH
Confidence 4568888888851 111456676777774 4445555443
No 391
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=28.78 E-value=66 Score=15.12 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=11.0
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
-|++.++++|+.+.
T Consensus 14 ~~~v~W~~~~~~l~ 27 (82)
T cd05761 14 AATIRWFKGDKELK 27 (82)
T ss_pred CCeEEEEECCEEcc
Confidence 37899999998764
No 392
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=28.56 E-value=54 Score=13.85 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 28 DIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 28 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
++.+.+.-.++..+.+..++ .++.|. +..+|..++.
T Consensus 20 ~~~~~~~~~~~~~~~V~d~~---~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 20 EALEIMRKNGISRLPVVDED---GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHHHHHHTSSEEEEESTT---SBEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEecC---CEEEEEEEHHHHHhhhh
Confidence 34444444456666667433 566677 7777776653
No 393
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=28.21 E-value=64 Score=15.34 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=11.5
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
..|++.++++|+.+
T Consensus 32 p~p~i~W~k~~~~l 45 (91)
T cd04967 32 PPPTYRWLMNGTEI 45 (91)
T ss_pred CCCEEEEEECCEEC
Confidence 46799999999876
No 394
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=28.21 E-value=1.1e+02 Score=19.48 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.5
Q ss_pred CCccCEEEEEeCCeEEeeeeC
Q psy11066 35 ISSMPTFVFVKSTAKVEQFSG 55 (70)
Q Consensus 35 i~~~Pt~~~~~~g~~~~~~~g 55 (70)
..+-|++.+.++|+.+....|
T Consensus 366 ~~G~v~~~i~R~g~~V~~~~G 386 (386)
T PF03659_consen 366 ATGTVSVSIVRGGKTVASGTG 386 (386)
T ss_pred CCCcEEEEEEECCEEEEEeeC
Confidence 467788999999999888766
No 395
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=28.08 E-value=68 Score=15.60 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=11.1
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|..+
T Consensus 32 P~P~i~W~k~~~~i 45 (93)
T cd05849 32 PFPIYKWRKNNLDI 45 (93)
T ss_pred CCCEEEEEECCEEc
Confidence 46788999998765
No 396
>PRK14434 acylphosphatase; Provisional
Probab=27.53 E-value=91 Score=15.51 Aligned_cols=38 Identities=11% Similarity=-0.067 Sum_probs=21.1
Q ss_pred HHHHHHcC-CCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYD-ISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~-i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.+++ +.++- .=..+|.+.....|...+.+..++.
T Consensus 22 ~~~A~~lg~l~G~V--~N~~dGsVei~~qG~~~~~l~~f~~ 60 (92)
T PRK14434 22 YSLALEIGDIYGRV--WNNDDGTVEILAQSDDSAKLAKFIQ 60 (92)
T ss_pred HHHHHHcCCcEEEE--EECCCCCEEEEEEcCCHHHHHHHHH
Confidence 45678888 77732 1114566666667753344544444
No 397
>PRK14422 acylphosphatase; Provisional
Probab=27.47 E-value=91 Score=15.52 Aligned_cols=37 Identities=5% Similarity=-0.011 Sum_probs=20.6
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.++++.++-.=. .+|.+.....|. .+.|.+++.
T Consensus 26 ~~~A~~~gl~G~V~N~--~dG~Vei~~~G~-~~~i~~f~~ 62 (93)
T PRK14422 26 RSRALELGLTGYAANL--ADGRVQVVAEGP-RAACEKLLQ 62 (93)
T ss_pred HHHHHHcCCEEEEEEC--CCCCEEEEEEcC-HHHHHHHHH
Confidence 4568888888743111 456666666674 333444433
No 398
>PRK14439 acylphosphatase; Provisional
Probab=26.78 E-value=1.3e+02 Score=17.00 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=22.8
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHh
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLA 67 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 67 (70)
...|.++++.++-.= ..+|.+.....|. .+.|.++++.
T Consensus 95 ~~~A~qlGLtGwVrN--l~DGsVEI~aQG~-ee~Ie~Fi~~ 132 (163)
T PRK14439 95 QYEAKKLGLTGYAKN--LDDGSVEVVACGE-EGQVEKLMQW 132 (163)
T ss_pred HHHHHHhCCEEEEEE--CCCCCEEEEEEcC-HHHHHHHHHH
Confidence 567899999884211 1467676777774 4445555443
No 399
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=26.64 E-value=1.1e+02 Score=16.11 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=30.1
Q ss_pred CcEEEEEeC---cCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHHhh
Q psy11066 15 DVVFLKVDV---DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVLAN 68 (70)
Q Consensus 15 ~i~~~~vd~---~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~~~ 68 (70)
++-++.++- +..++.-++|. ..+|+++.+.+.+ -|+ ..+.+.+.+...
T Consensus 60 digIIlIte~~a~~i~~~I~~~~-~~~PaIieIP~k~-----~~y~~~~d~i~~~~~~~ 112 (115)
T TIGR01101 60 DIAIILINQHIAEMIRHAVDAHT-RSIPAVLEIPSKD-----HPYDASKDSILRRARGM 112 (115)
T ss_pred CeEEEEEcHHHHHHhHHHHHhcC-CcCCEEEEECCCC-----CCCCCcccHHHHHHHHH
Confidence 355555553 44567778899 9999999997632 233 345555555443
No 400
>PRK14436 acylphosphatase; Provisional
Probab=26.54 E-value=95 Score=15.39 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=20.4
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.++++.++-. =..+|++.....|. .+.+.+++.
T Consensus 24 ~~~A~~l~l~G~V~--N~~dG~Vei~~qG~-~~~i~~f~~ 60 (91)
T PRK14436 24 QREARKLGVNGWVR--NLPDGSVEAVLEGD-EERVEALIG 60 (91)
T ss_pred HHHHHHcCCEEEEE--ECCCCcEEEEEEcC-HHHHHHHHH
Confidence 45678888887321 11456666666674 333444443
No 401
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=26.38 E-value=1.2e+02 Score=16.34 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=11.9
Q ss_pred HHHHHHHhhCCCcEEEEE
Q psy11066 4 VMLQELASEFPDVVFLKV 21 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~v 21 (70)
++++++.+.|+++.+..+
T Consensus 113 ~vi~qF~~~~pni~~~v~ 130 (133)
T PF14424_consen 113 NVIEQFKKDFPNIKVNVV 130 (133)
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567777777777665544
No 402
>PRK14425 acylphosphatase; Provisional
Probab=25.90 E-value=1e+02 Score=15.42 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=22.5
Q ss_pred cHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHH
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVL 66 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~ 66 (70)
...+|.++++.++-. =..+|.+.....|. ..+.+..+|.
T Consensus 25 v~~~A~~~gl~G~V~--N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 25 TRDEAERLGLTGWVR--NESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred HHHHHHHhCCEEEEE--ECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 356788888887321 11467666667775 2344444443
No 403
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=25.78 E-value=43 Score=19.90 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=24.5
Q ss_pred EEEEeCcCcHHHHHHcCCCccCEEEEEe--CCeEEeeeeCC-CHHHHHHHHHhhc
Q psy11066 18 FLKVDVDESEDIAMAYDISSMPTFVFVK--STAKVEQFSGA-NFDKLRSTVLANR 69 (70)
Q Consensus 18 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~i~~~~ 69 (70)
.+.+|.+.. |.-..|||.++.. +-......... ..+.++..|.+++
T Consensus 173 aYvfdL~~e------~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qil 221 (238)
T PF07808_consen 173 AYVFDLDDE------YAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQIL 221 (238)
T ss_pred EEEEecCCC------cccccCCCeeecchhhCccchheeccccchHHHHHHHHHH
Confidence 334555543 3346799999883 22222322233 4555666666554
No 404
>PRK14443 acylphosphatase; Provisional
Probab=25.70 E-value=1e+02 Score=15.47 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=21.8
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
...|.++++.++-. =..+|.+.....|. .+.|.++++
T Consensus 24 ~~~A~~~gl~G~V~--N~~dG~Vei~~qG~-~~~l~~f~~ 60 (93)
T PRK14443 24 KHVAYKYDISGTVK--NLDDGSVEIHAIAE-EENLNKFID 60 (93)
T ss_pred HHHHHHcCCEEEEE--ECCCCEEEEEEECC-HHHHHHHHH
Confidence 46688888887321 11467777777774 333444444
No 405
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=25.43 E-value=1.1e+02 Score=18.10 Aligned_cols=27 Identities=4% Similarity=-0.044 Sum_probs=17.7
Q ss_pred EEEEeCCeEEeeeeCC---CHHHHHHHHHh
Q psy11066 41 FVFVKSTAKVEQFSGA---NFDKLRSTVLA 67 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~---~~~~l~~~i~~ 67 (70)
+.++++|+.+....-. ....++.||..
T Consensus 176 v~l~rdG~vv~~~~~~l~V~KvG~e~~i~~ 205 (236)
T PF09608_consen 176 VYLFRDGQVVASQETPLRVRKVGFERWIYN 205 (236)
T ss_pred EEEEECCEEEEEEeeEEEEEEccHHHHHHH
Confidence 5677999988766543 34456666654
No 406
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=25.10 E-value=87 Score=14.47 Aligned_cols=16 Identities=0% Similarity=0.266 Sum_probs=11.5
Q ss_pred CccCEEEEEeCCeEEe
Q psy11066 36 SSMPTFVFVKSTAKVE 51 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~~ 51 (70)
.--|++.++++|+.+.
T Consensus 12 ~P~~~v~W~~~g~~l~ 27 (82)
T cd05759 12 KPAAEIIWFRDGEVLD 27 (82)
T ss_pred cCCCEEEEEECCEEcc
Confidence 3347889999997653
No 407
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.96 E-value=14 Score=15.16 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=7.6
Q ss_pred CHHHHHHHHH
Q psy11066 57 NFDKLRSTVL 66 (70)
Q Consensus 57 ~~~~l~~~i~ 66 (70)
+.+++.+|++
T Consensus 39 ~~~~l~~~~~ 48 (49)
T TIGR01764 39 PREDVDEYLE 48 (49)
T ss_pred eHHHHHHHHh
Confidence 6778888775
No 408
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=24.92 E-value=84 Score=16.69 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=12.9
Q ss_pred CccCEEEEEeCCeEE
Q psy11066 36 SSMPTFVFVKSTAKV 50 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~ 50 (70)
+-+||+++..||.-+
T Consensus 43 R~Ypv~lV~pDGSTI 57 (116)
T PF09776_consen 43 RLYPVLLVRPDGSTI 57 (116)
T ss_pred hhccEEEEecCCCEE
Confidence 679999999999755
No 409
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=24.55 E-value=90 Score=14.42 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=12.4
Q ss_pred ccCEEEEEeCCeEEee
Q psy11066 37 SMPTFVFVKSTAKVEQ 52 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~~~ 52 (70)
..|++.++++|..+..
T Consensus 28 p~~~v~W~~~~~~l~~ 43 (90)
T PF07679_consen 28 PPPTVTWYKNGRPLTS 43 (90)
T ss_dssp SSSEEEEEETTEEEES
T ss_pred CCCcccccccccceee
Confidence 4578999999987754
No 410
>CHL00039 psbF photosystem II protein VI
Probab=24.45 E-value=49 Score=13.83 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=6.9
Q ss_pred CccCEEEEE
Q psy11066 36 SSMPTFVFV 44 (70)
Q Consensus 36 ~~~Pt~~~~ 44 (70)
-++||+.+.
T Consensus 20 lavPtvffl 28 (39)
T CHL00039 20 LAVPTVFFL 28 (39)
T ss_pred ccCCceeec
Confidence 578988776
No 411
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=24.15 E-value=74 Score=13.31 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.8
Q ss_pred eeCC-CHHHHHHHHHh
Q psy11066 53 FSGA-NFDKLRSTVLA 67 (70)
Q Consensus 53 ~~g~-~~~~l~~~i~~ 67 (70)
..|+ +.++|.+++.+
T Consensus 10 ~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 10 QQGPFSLEELRQLISS 25 (45)
T ss_pred EECCcCHHHHHHHHHc
Confidence 3577 99999988864
No 412
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=23.85 E-value=54 Score=15.11 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=14.0
Q ss_pred CcHHHHHHcCCCccCEE
Q psy11066 25 ESEDIAMAYDISSMPTF 41 (70)
Q Consensus 25 ~~~~~~~~~~i~~~Pt~ 41 (70)
.-..+|..||....|.+
T Consensus 47 ~l~~~A~sfGL~~~P~v 63 (65)
T PF13959_consen 47 DLGHLAKSFGLLEAPKV 63 (65)
T ss_pred CHHHHHHHcCCCCCCCC
Confidence 45678999999999975
No 413
>PRK14427 acylphosphatase; Provisional
Probab=23.85 E-value=1.1e+02 Score=15.24 Aligned_cols=37 Identities=5% Similarity=-0.043 Sum_probs=20.5
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~ 66 (70)
..+|.++++.++-.=. .+|.+.....|. .+.|.+++.
T Consensus 26 ~~~A~~lgl~G~V~N~--~dGsVei~~qG~-~~~i~~f~~ 62 (94)
T PRK14427 26 MRKAEELGLTGTVRNL--DDGSVALVAEGT-GEQVEKLLD 62 (94)
T ss_pred HHHHHHcCCEEEEEEC--CCCeEEEEEEEC-HHHHHHHHH
Confidence 4567888888743211 456666666674 333444443
No 414
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=23.82 E-value=1.6e+02 Score=17.13 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHcCCC--ccCEEEEEeCCeEEeeeeCCCHHHHHHHHHh
Q psy11066 29 IAMAYDIS--SMPTFVFVKSTAKVEQFSGANFDKLRSTVLA 67 (70)
Q Consensus 29 ~~~~~~i~--~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~ 67 (70)
..+.+|+. .+||-+...|...+..+...+.+.+.+.++.
T Consensus 14 t~~a~G~~~~~v~Talt~qn~~~~~~~~~~~~~~~~~ql~~ 54 (246)
T PF08543_consen 14 TISALGVHGCPVPTALTSQNTYGVFDIEPVDSEMIKAQLDA 54 (246)
T ss_dssp HHHHTTEEEEEEEEEEEEEETTEEEEEEE--HHHHHHHHHH
T ss_pred HHHHcCCccceEeEEEEecCCcceEEEEECCHHHHHHHHHH
Confidence 34566665 6777777777666655554455555554443
No 415
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=23.69 E-value=1.1e+02 Score=14.95 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=12.5
Q ss_pred EEEeCCeEEeeeeC
Q psy11066 42 VFVKSTAKVEQFSG 55 (70)
Q Consensus 42 ~~~~~g~~~~~~~g 55 (70)
++|++|+.+....+
T Consensus 36 i~f~~G~iv~A~~~ 49 (103)
T PF14332_consen 36 IYFRDGRIVHASSG 49 (103)
T ss_pred EEEECCEEEEEEeC
Confidence 88899999988888
No 416
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=23.60 E-value=2.2e+02 Score=18.61 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccC---EEEEEeCCeEEeeeeCCCHHHHHHH
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMP---TFVFVKSTAKVEQFSGANFDKLRST 64 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P---t~~~~~~g~~~~~~~g~~~~~l~~~ 64 (70)
+.+.++.+++++.++..+.++... -|.++++ |-+-+-+|+.--++.|++.+++.+.
T Consensus 17 ~~~~~l~~~~g~~~~~~~t~~~~~-----~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~ 75 (427)
T TIGR01793 17 EKVKKLRAEHGKVVLGNITVDMVY-----GGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKL 75 (427)
T ss_pred HHHHHHHHHcCCceeeeeeHhhcc-----CccCCCcccceeceEEcCCCCeEECCeeHHHHHHH
Confidence 456777778888888877766521 2444444 3333445544347889887776543
No 417
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=23.27 E-value=66 Score=14.51 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=9.6
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|..+
T Consensus 11 P~P~v~W~k~~~~~ 24 (71)
T cd05876 11 PTPEVHWDRIDGPL 24 (71)
T ss_pred cCCeEEEEECCcCC
Confidence 34678888887543
No 418
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=23.22 E-value=93 Score=15.04 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=11.0
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.|++.++++|..+
T Consensus 31 ~p~i~W~kng~~l 43 (91)
T cd05740 31 ATYIWWVNNGSLL 43 (91)
T ss_pred CCEEEEEECCEEC
Confidence 8999999998764
No 419
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=23.20 E-value=1.7e+02 Score=18.36 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=22.0
Q ss_pred EEEEeCcCcHHHHHHcCCCccCEEEEEe
Q psy11066 18 FLKVDVDESEDIAMAYDISSMPTFVFVK 45 (70)
Q Consensus 18 ~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 45 (70)
++.+|...+.....+-.-.++|++-+..
T Consensus 156 viv~d~~~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 156 LFVIDTNKEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred EEEeCCccchHHHHHHHHcCCCEEEEee
Confidence 5567777777777777778999999995
No 420
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=23.16 E-value=1.6e+02 Score=16.88 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=21.9
Q ss_pred CEEEEEeCCeEEeeeeCC-CHHHHHHHHHh
Q psy11066 39 PTFVFVKSTAKVEQFSGA-NFDKLRSTVLA 67 (70)
Q Consensus 39 Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~~ 67 (70)
|++++|..++.-....|. +.+++...+++
T Consensus 185 gNvIiy~~~~p~g~wyGrv~p~~v~~iv~~ 214 (230)
T PF06999_consen 185 GNVIIYSKPKPDGIWYGRVTPEDVEGIVDA 214 (230)
T ss_pred CeEEEEecCCCcEEEEEeeCHHHHHHHHHH
Confidence 788888545566677788 88888888876
No 421
>KOG1727|consensus
Probab=23.11 E-value=69 Score=18.12 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.0
Q ss_pred CCccCEEEEEeCCeE
Q psy11066 35 ISSMPTFVFVKSTAK 49 (70)
Q Consensus 35 i~~~Pt~~~~~~g~~ 49 (70)
-...|++++|++|-+
T Consensus 151 g~~~P~~~ffk~gl~ 165 (169)
T KOG1727|consen 151 GGVTPYMIFFKDGLE 165 (169)
T ss_pred CCcCceEEEeccCcc
Confidence 357999999998844
No 422
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=22.99 E-value=99 Score=14.52 Aligned_cols=13 Identities=0% Similarity=-0.046 Sum_probs=10.2
Q ss_pred cCEEEEEeCCeEE
Q psy11066 38 MPTFVFVKSTAKV 50 (70)
Q Consensus 38 ~Pt~~~~~~g~~~ 50 (70)
.+++.+++||+.+
T Consensus 30 ~~~~~W~kng~~l 42 (78)
T cd05752 30 QNSTQWYHNGKLL 42 (78)
T ss_pred CccEEEEECCEEe
Confidence 4568889999876
No 423
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=22.99 E-value=91 Score=14.83 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=10.8
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
-.|++.++++|+.+
T Consensus 31 P~p~v~W~k~g~~~ 44 (95)
T cd05730 31 PEPTMTWTKDGEPI 44 (95)
T ss_pred CCCEEEEEECCEEC
Confidence 46788888998765
No 424
>PRK02561 psbF cytochrome b559 subunit beta; Provisional
Probab=22.94 E-value=50 Score=14.26 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=7.3
Q ss_pred CCccCEEEEE
Q psy11066 35 ISSMPTFVFV 44 (70)
Q Consensus 35 i~~~Pt~~~~ 44 (70)
.-++||+.+.
T Consensus 24 alavPtVfFl 33 (44)
T PRK02561 24 ALGVPTVFFL 33 (44)
T ss_pred ccccCceeec
Confidence 3578998776
No 425
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=22.83 E-value=71 Score=12.66 Aligned_cols=16 Identities=6% Similarity=-0.002 Sum_probs=12.5
Q ss_pred eCCCHHHHHHHHHhhc
Q psy11066 54 SGANFDKLRSTVLANR 69 (70)
Q Consensus 54 ~g~~~~~l~~~i~~~~ 69 (70)
.|++.++..++|++..
T Consensus 16 rGY~~~eVD~fLd~v~ 31 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVA 31 (34)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5888888888887753
No 426
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=22.82 E-value=1.2e+02 Score=15.37 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=16.4
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVL 66 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i~ 66 (70)
..++...|+.-+=+++.-++.-....+.|. ..++|.+++.
T Consensus 14 ~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~ 54 (95)
T PF13167_consen 14 EELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIE 54 (95)
T ss_pred HHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHh
Confidence 444555444333333322222123344455 4555555443
No 427
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=22.57 E-value=1e+02 Score=14.87 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=10.8
Q ss_pred HHHHHHcCCCccCEEEEEe
Q psy11066 27 EDIAMAYDISSMPTFVFVK 45 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~ 45 (70)
..+-+.|+..++|-.+.|+
T Consensus 62 n~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 62 NQLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp HHHHHHH--TTS--EEEEE
T ss_pred HHHHHHCCCCceeEEEEeC
Confidence 3467788999999877764
No 428
>KOG3445|consensus
Probab=22.52 E-value=1.5e+02 Score=16.32 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEE-eCCeEEeeeeCC-CHHHHHHHHHhh
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFV-KSTAKVEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~i~~~ 68 (70)
..+.+++++++++.|..-... -..|.+... .||.+.....-. +.+++..++..+
T Consensus 46 ~~L~~~a~enP~v~i~v~~rr-----------g~hP~lraeY~NGre~vicvrnms~eevs~~~~lL 101 (145)
T KOG3445|consen 46 SELPDLARENPGVVIYVEPRR-----------GQHPLLRAEYLNGRERVICVRNMSQEEVSKKATLL 101 (145)
T ss_pred HHHHHHHhhCCCeEEEEeccC-----------CCCceEEEEecCCceEEEeeccCCHHHHHHHHHHH
Confidence 446777778877766543322 135776655 688766555555 888887776543
No 429
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=22.41 E-value=1e+02 Score=14.42 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=17.1
Q ss_pred eCCeE-EeeeeCC-CHHHHHHHHHhh
Q psy11066 45 KSTAK-VEQFSGA-NFDKLRSTVLAN 68 (70)
Q Consensus 45 ~~g~~-~~~~~g~-~~~~l~~~i~~~ 68 (70)
.+|+. ..++... +...|.+|+...
T Consensus 14 pdG~~l~~~F~~~~tl~~l~~~v~~~ 39 (82)
T PF00789_consen 14 PDGSRLQRRFPKSDTLQDLYDFVESQ 39 (82)
T ss_dssp TTSTEEEEEEETTSBHHHHHHHHHHH
T ss_pred CCCCEEEEEECCcchHHHHHHHHHHh
Confidence 57765 4556655 788999998754
No 430
>PRK14440 acylphosphatase; Provisional
Probab=22.32 E-value=1.2e+02 Score=15.01 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=21.2
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 65 (70)
...|.++++.++ +.=..+|.+.....|. .+.+.+++
T Consensus 23 ~~~A~~~gl~G~--V~N~~dG~Vei~~~G~-~~~v~~f~ 58 (90)
T PRK14440 23 QIHAIRLGIKGY--AKNLPDGSVEVVAEGY-EEALSKLL 58 (90)
T ss_pred HHHHHHcCCEEE--EEECCCCCEEEEEEcC-HHHHHHHH
Confidence 456888888884 2222567666667774 34344444
No 431
>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria. The BLUF domain is involved in sensing blue-light (and possibly redox) using FAD and is similar to the flavin-binding PAS domains and cryptochromes. The predicted secondary structure reveals that the BLUF domain is a novel FAD-binding fold [].; PDB: 2IYG_A 2IYI_B 1X0P_A 2HFN_G 3MZI_A 2HFO_E 3GFZ_A 3GG1_B 2KB2_A 3GFY_A ....
Probab=22.15 E-value=1.2e+02 Score=15.04 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=18.7
Q ss_pred EEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 41 FVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 41 ~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
+++|.+|.-..-.+| +.+.+.+..+++
T Consensus 38 ~Ll~~~~~F~Q~LEG-~~~~v~~l~~rI 64 (93)
T PF04940_consen 38 FLLYDGGHFFQVLEG-PEEAVDALFERI 64 (93)
T ss_dssp EEEEETTEEEEEEEE-EHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEEC-CHHHHHHHHHHH
Confidence 678889998999999 444454444443
No 432
>COG1666 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.88 E-value=1.7e+02 Score=16.52 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=21.8
Q ss_pred cHHHHHHcCCCccCEEEEEeCCeEEeeeeCCC
Q psy11066 26 SEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57 (70)
Q Consensus 26 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 57 (70)
..+++.+|...++.+-+=.++ .+.....+.+
T Consensus 26 ~kel~sR~Dfkg~~~~iel~e-~e~i~l~s~s 56 (165)
T COG1666 26 NKELASRFDFKGVKASIELKE-NETIKLTSES 56 (165)
T ss_pred HHHHHhhhccCCCcceEecCC-CceEEEeecc
Confidence 467899999999999887766 3333443433
No 433
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=21.86 E-value=59 Score=14.70 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=10.5
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
..|++.++++|..+
T Consensus 22 p~p~i~W~k~~~~~ 35 (82)
T cd05856 22 PRPDITWLKDNKPL 35 (82)
T ss_pred CCCcEEEEECCcCC
Confidence 35788999988654
No 434
>KOG1360|consensus
Probab=21.84 E-value=2.1e+02 Score=19.12 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=28.6
Q ss_pred eCcCcHHHHHHcCCCccCEEEEEeCCeEEeeeeCC--CHHHHHHHHHhh
Q psy11066 22 DVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA--NFDKLRSTVLAN 68 (70)
Q Consensus 22 d~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~i~~~ 68 (70)
|.+.-..+-+.+. .++|.++.|. .+..+.|. ..++|.+.-.++
T Consensus 288 D~~hL~~lL~~~~-~svPKivAFE---tVhSM~GavcpleelcDvah~y 332 (570)
T KOG1360|consen 288 DLDHLEQLLQSSP-KSVPKIVAFE---TVHSMDGAVCPLEELCDVAHKY 332 (570)
T ss_pred CHHHHHHHHHhCC-CCCCceEEEe---eeeccCCCcCCHHHHHHHHHHh
Confidence 3344455555655 6889999885 56777887 677777765554
No 435
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=21.75 E-value=88 Score=14.13 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=9.0
Q ss_pred ccCEEEEEeCCe
Q psy11066 37 SMPTFVFVKSTA 48 (70)
Q Consensus 37 ~~Pt~~~~~~g~ 48 (70)
-.|++.++++|.
T Consensus 11 P~P~v~W~k~~~ 22 (75)
T cd05763 11 PTPQIAWQKDGG 22 (75)
T ss_pred cCCEEEEEeCCC
Confidence 356699999875
No 436
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=21.69 E-value=1e+02 Score=14.15 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=9.8
Q ss_pred ccCEEEEEeCCeEE
Q psy11066 37 SMPTFVFVKSTAKV 50 (70)
Q Consensus 37 ~~Pt~~~~~~g~~~ 50 (70)
..|++.++++|..+
T Consensus 14 P~p~v~W~~~~~~~ 27 (78)
T cd05743 14 PTPIINWRLNWGHV 27 (78)
T ss_pred cCCEEEEEECCeEC
Confidence 35788888887543
No 437
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=21.54 E-value=87 Score=17.79 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=11.4
Q ss_pred CccCEEEEEeCCeE
Q psy11066 36 SSMPTFVFVKSTAK 49 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~ 49 (70)
-..|++++|++|-.
T Consensus 155 g~tP~~~f~KdGL~ 168 (172)
T PTZ00151 155 ELAPRFVYIKDGLK 168 (172)
T ss_pred CcceEEEEEcccce
Confidence 36899999999954
No 438
>TIGR01333 cyt_b559_beta cytochrome b559, beta subunit. This model describes the beta subunit of cytochrome b559, about 40 residues in length. It is homologous to the N-terminal half of the alpha subunit, a protein of about 83 residues. Cytochrome b559 is associated with photosystem II.
Probab=21.54 E-value=57 Score=13.92 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=7.2
Q ss_pred CCccCEEEEE
Q psy11066 35 ISSMPTFVFV 44 (70)
Q Consensus 35 i~~~Pt~~~~ 44 (70)
.-++||+.+.
T Consensus 23 ~lavPtVffl 32 (43)
T TIGR01333 23 ALAIPTVFFF 32 (43)
T ss_pred cccCCceeec
Confidence 3578988766
No 439
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.36 E-value=81 Score=12.75 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=8.2
Q ss_pred CHHHHHHHHHhh
Q psy11066 57 NFDKLRSTVLAN 68 (70)
Q Consensus 57 ~~~~l~~~i~~~ 68 (70)
+..+|.+||+.+
T Consensus 5 s~~~L~~wL~~~ 16 (38)
T PF10281_consen 5 SDSDLKSWLKSH 16 (38)
T ss_pred CHHHHHHHHHHc
Confidence 566777777654
No 440
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=21.36 E-value=1.9e+02 Score=17.12 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=15.2
Q ss_pred HHHHhhCCCcEEEEEeCcCcH
Q psy11066 7 QELASEFPDVVFLKVDVDESE 27 (70)
Q Consensus 7 ~~~~~~~~~i~~~~vd~~~~~ 27 (70)
+++...+.++.|..|||...+
T Consensus 107 e~~~~~~~~iDF~vVDc~~~d 127 (218)
T PF07279_consen 107 EEVMPGLKGIDFVVVDCKRED 127 (218)
T ss_pred HHHHhhccCCCEEEEeCCchh
Confidence 345556778999999998543
No 441
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=21.24 E-value=49 Score=18.51 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.8
Q ss_pred CccCEEEEEeCCe
Q psy11066 36 SSMPTFVFVKSTA 48 (70)
Q Consensus 36 ~~~Pt~~~~~~g~ 48 (70)
...|++++|++|-
T Consensus 151 g~tP~~~f~KdGL 163 (165)
T PF00838_consen 151 GVTPYFIFFKDGL 163 (165)
T ss_dssp SSSEEEEEEGGGE
T ss_pred CccEEEEEEcccc
Confidence 4789999999884
No 442
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.20 E-value=1.4e+02 Score=15.25 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=28.7
Q ss_pred HHhhCCC--cEEEEEeCcCcH------HHHHHc--CCCccCEEEEEeCCeEEeeeeCC-CHHHHHHHH
Q psy11066 9 LASEFPD--VVFLKVDVDESE------DIAMAY--DISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65 (70)
Q Consensus 9 ~~~~~~~--i~~~~vd~~~~~------~~~~~~--~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~i 65 (70)
+.++|++ ..+..+|+.+.+ +++++. .-.-+|-++ -+|+.+.. |. ....+...+
T Consensus 29 l~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~--i~~eiV~E--Gnp~LK~I~~~~ 92 (93)
T PF07315_consen 29 LKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV--INDEIVAE--GNPQLKDIYEEM 92 (93)
T ss_dssp HHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE--ETTEEEEE--SS--HHHHHHHH
T ss_pred HhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE--ECCEEEec--CCccHHHHHHhh
Confidence 4568887 888899987532 344432 223567655 57776653 54 555555444
No 443
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=21.15 E-value=85 Score=13.90 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=9.2
Q ss_pred ccCEEEEEeCCeE
Q psy11066 37 SMPTFVFVKSTAK 49 (70)
Q Consensus 37 ~~Pt~~~~~~g~~ 49 (70)
..|++.++++|..
T Consensus 11 P~p~v~W~k~~~~ 23 (69)
T cd05725 11 PVPTVLWRKEDGE 23 (69)
T ss_pred CCCEEEEEECCcc
Confidence 3577888887653
No 444
>PRK14423 acylphosphatase; Provisional
Probab=21.10 E-value=1.3e+02 Score=14.91 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=19.5
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHH
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i 65 (70)
..+|.++++.++-.= ..+|.+.....|. .+.+.+++
T Consensus 25 ~~~A~~lgl~G~V~N--~~dG~Vei~~~G~-~~~i~~f~ 60 (92)
T PRK14423 25 RDTARELGVDGWVRN--LDDGRVEAVFEGP-RDAVEAMV 60 (92)
T ss_pred HHHHHHcCCEEEEEE--CCCCeEEEEEEEC-HHHHHHHH
Confidence 456788888774311 1466655556664 33344443
No 445
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.07 E-value=1.7e+02 Score=18.24 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCeEEe
Q psy11066 4 VMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVE 51 (70)
Q Consensus 4 p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 51 (70)
..+.++.++++. +.|+.=|.++.-.++++ +.++++|+.+.
T Consensus 176 ~e~~~lq~~l~kTivfVTHDidEA~kLadr--------i~vm~~G~i~Q 216 (309)
T COG1125 176 EEIKELQKELGKTIVFVTHDIDEALKLADR--------IAVMDAGEIVQ 216 (309)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHhhhce--------EEEecCCeEEE
Confidence 345666777766 88888899988877776 34556776543
No 446
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=20.80 E-value=1.3e+02 Score=14.90 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=19.5
Q ss_pred HHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCCccCEEEEEeCCe
Q psy11066 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTA 48 (70)
Q Consensus 6 ~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 48 (70)
+.++++.++= .+..+++.+ ++.-..+|.+++.++|.
T Consensus 44 l~~~a~~~Gl~~~~~~~~~~-------~l~~~~lP~I~~~~~g~ 80 (121)
T cd02417 44 LLLAAKSLGLKAKAVRQPVE-------RLARLPLPALAWDDDGG 80 (121)
T ss_pred HHHHHHHcCCeeEEEecCHH-------HhccCCCCEEEEccCCC
Confidence 4455555532 444444432 23334789988887763
No 447
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=20.67 E-value=2.4e+02 Score=17.92 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=28.4
Q ss_pred chHHHHHHHhhCCCcEEEEEeCc-----------C------cHHHHHHcCCCccCEEEEE
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVD-----------E------SEDIAMAYDISSMPTFVFV 44 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~-----------~------~~~~~~~~~i~~~Pt~~~~ 44 (70)
|....+.+-..++++.|++.-.- + .-.++...|+...|++.+-
T Consensus 109 ~k~~~d~i~~~~~di~FlRFv~f~~~wilED~fS~~~~p~~~L~~a~~~Gl~~~p~l~i~ 168 (334)
T PF05941_consen 109 MKEACDAILADYPDIEFLRFVYFKNRWILEDAFSKYSSPIEILKLASEEGLNVVPYLRIR 168 (334)
T ss_pred HHHHHHHHHhhCCCceEEEEEEEcCeEEEeeeccccCCHHHHHHHHHHHhhccCceEEEE
Confidence 34556777778888666653221 1 1235788899999998876
No 448
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=20.61 E-value=1.7e+02 Score=16.30 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=17.8
Q ss_pred eCCeEEeeeeCCCHHHHHHHHHhhc
Q psy11066 45 KSTAKVEQFSGANFDKLRSTVLANR 69 (70)
Q Consensus 45 ~~g~~~~~~~g~~~~~l~~~i~~~~ 69 (70)
..|+.+.-+.|...+.+.+.+.+++
T Consensus 122 ~~g~~vQIIiG~~v~~i~~~i~~~l 146 (161)
T PRK09702 122 RSGDAIQVIIGLHVSQLREQLDSLI 146 (161)
T ss_pred EeCCeEEEEECCCHHHHHHHHHHHH
Confidence 4556788888987777777666554
No 449
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=20.59 E-value=1.1e+02 Score=14.70 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=11.3
Q ss_pred CccCEEEEEeCCeEE
Q psy11066 36 SSMPTFVFVKSTAKV 50 (70)
Q Consensus 36 ~~~Pt~~~~~~g~~~ 50 (70)
...|++.+|++|..+
T Consensus 28 ~P~p~i~W~k~~~~~ 42 (92)
T cd05891 28 NPDPEVIWFKNDQDI 42 (92)
T ss_pred eCCCeEEEEECCEEC
Confidence 346888999988754
No 450
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.48 E-value=1.5e+02 Score=16.03 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCcEEEEEeCcCcHHHHHHcCCCccCEEEEE
Q psy11066 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFV 44 (70)
Q Consensus 4 p~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 44 (70)
|-+|++.+..+++.+..-.. ..+..+++.-.++|++.+-
T Consensus 51 ~n~E~l~~l~PDlii~~~~~--~~~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 51 PNVEKIVALKPDLVIVSSSS--LAELLEKLKDAGIPVVVLP 89 (195)
T ss_pred CCHHHHhccCCCEEEEcCCc--CHHHHHHHHHcCCcEEEeC
Confidence 56788888888976663221 2334555555577776653
No 451
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=20.41 E-value=53 Score=14.28 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=13.4
Q ss_pred eCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 45 KSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 45 ~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
+.|+.+.--......+|.+||+.+
T Consensus 14 ~tGk~l~G~~AP~~~~L~~WL~~~ 37 (46)
T PF07533_consen 14 KTGKRLTGDEAPKLKELEEWLEEH 37 (46)
T ss_dssp TTTEEE-CCCS-BCCCHHHHHHH-
T ss_pred CCCCCcccccCcCHHHHHHHHHHC
Confidence 356554433333567888998865
No 452
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.39 E-value=2.5e+02 Score=17.96 Aligned_cols=40 Identities=8% Similarity=-0.055 Sum_probs=26.2
Q ss_pred cEEEEEeCcCcH---HHHHHcCCCcc--CEEEEEeCCeEEeeeeC
Q psy11066 16 VVFLKVDVDESE---DIAMAYDISSM--PTFVFVKSTAKVEQFSG 55 (70)
Q Consensus 16 i~~~~vd~~~~~---~~~~~~~i~~~--Pt~~~~~~g~~~~~~~g 55 (70)
+++..+.|--|. .--.++||.+- -..++|++|+.+.++.+
T Consensus 290 l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 290 LKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred CEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 888887774321 11356777754 45888999988777644
No 453
>PF09627 PrgU: PrgU-like protein; InterPro: IPR018589 This hypothetical protein of 125 residues is expressed in bacteria but is thought to be plasmid in origin. It forms a six beta-strand barrel with three accompanying alpha helices and is probably a homo-dimer in the cell. It may be involved in pheromone-inducible conjugation []. ; PDB: 2GMQ_B.
Probab=20.31 E-value=1.5e+02 Score=15.37 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=12.7
Q ss_pred CCCccCEEEEEeCCeEE
Q psy11066 34 DISSMPTFVFVKSTAKV 50 (70)
Q Consensus 34 ~i~~~Pt~~~~~~g~~~ 50 (70)
+|.-+-|+.+++||+.+
T Consensus 45 NI~EI~~i~iiKNGKsL 61 (122)
T PF09627_consen 45 NIQEIDTIHIIKNGKSL 61 (122)
T ss_dssp TGGG--EEEEEETTEEE
T ss_pred HceeeeeeeeecCCcEE
Confidence 67789999999999864
No 454
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=20.26 E-value=1.6e+02 Score=15.74 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCCCHHHHHHHHHhh
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~i~~~ 68 (70)
.++..+.|...+=|++ ..|..+.+ ...+.+.+...|.+.
T Consensus 25 r~~l~~~Gf~~V~Tyi--~SGNvvf~-~~~~~~~l~~~ie~~ 63 (137)
T PF08002_consen 25 REALEDLGFTNVRTYI--QSGNVVFE-SDRDPAELAAKIEKA 63 (137)
T ss_dssp HHHHHHCT-EEEEEET--TTTEEEEE-ESS-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCceEEE--eeCCEEEe-cCCChHHHHHHHHHH
Confidence 4455666666665544 66777777 333666666555543
No 455
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=20.21 E-value=1.1e+02 Score=14.93 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=11.2
Q ss_pred cCEEEEEeCCeEEe
Q psy11066 38 MPTFVFVKSTAKVE 51 (70)
Q Consensus 38 ~Pt~~~~~~g~~~~ 51 (70)
.|++.+++||+.+.
T Consensus 24 ~~~i~W~~ng~~i~ 37 (87)
T cd05873 24 LARVVWKFDGKVLT 37 (87)
T ss_pred CCeEEEEECCEECC
Confidence 48899999998763
No 456
>PF11726 DUF3296: Protein of unknown function (DUF3296); InterPro: IPR021723 This family represents the Inovirus Gp2 protein. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII). In turn, viral DNA replication initiates at the 3'-OH of the cleavage site. After one round of rolling circle synthesis, protein G2P is linked to the newly synthesized ssDNA and joins the ends of the displaced strand to generate a circular single-stranded molecule ready to be packed into a virion. The dsRFI/ RFII forms of the phage DNA has the capability to integrate into the host genome via site-specific homologous recombination []. This feature has probably led to the spread of the gene throughout the gammaproteobacteria by lateral gene transfer.
Probab=20.15 E-value=1.7e+02 Score=16.11 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=18.6
Q ss_pred chHHHHHHHhhCCCcEEEEEeCc
Q psy11066 2 SLVMLQELASEFPDVVFLKVDVD 24 (70)
Q Consensus 2 ~~p~~~~~~~~~~~i~~~~vd~~ 24 (70)
+...++.+-+.++.+.+++||..
T Consensus 3 i~~~i~~~l~~ysr~l~iRvDL~ 25 (180)
T PF11726_consen 3 IREYIDQALERYSRLLVIRVDLR 25 (180)
T ss_pred HHHHHHHHHHhCCcEEEEEEECc
Confidence 45678888889988999999873
No 457
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.13 E-value=93 Score=20.15 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=27.1
Q ss_pred chHHHHHHHhhCCC-cEEEEEeCcCcHHHHHHcCCC
Q psy11066 2 SLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDIS 36 (70)
Q Consensus 2 ~~p~~~~~~~~~~~-i~~~~vd~~~~~~~~~~~~i~ 36 (70)
+.+.+++.++..+. +.+=.+|.+.-.+.+++||..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (404)
T TIGR03286 15 VQPEIEKAAEKVGAEIIFPEVDLDYIDEACRDFGLT 50 (404)
T ss_pred hHHHHHHHHHHcCCEEEcccccHHHHHHHHHHhCcc
Confidence 35678888888865 888888888877778887654
No 458
>PRK14448 acylphosphatase; Provisional
Probab=20.06 E-value=1.3e+02 Score=14.78 Aligned_cols=28 Identities=11% Similarity=-0.143 Sum_probs=16.0
Q ss_pred HHHHHHcCCCccCEEEEEeCCeEEeeeeCC
Q psy11066 27 EDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56 (70)
Q Consensus 27 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 56 (70)
...|.++++.++- .=..+|.+.....|.
T Consensus 22 ~~~A~~lgl~G~V--~N~~dG~Vei~~~G~ 49 (90)
T PRK14448 22 WQEATKIGIKGYV--KNRPDGSVEVVAVGS 49 (90)
T ss_pred HHHHHHhCCEEEE--EECCCCCEEEEEEeC
Confidence 4567777777732 111456666666664
Done!