RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11066
(70 letters)
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 88.5 bits (220), Expect = 4e-25
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
L+ ++ +V+FL+VDVD+ +D+A ++ SMPTF F K KV +FSGAN +KL +T
Sbjct: 52 FFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEAT 111
Query: 65 V 65
+
Sbjct: 112 I 112
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 87.3 bits (217), Expect = 1e-24
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
++ LA E P+V F KVDVD++E+ A Y +++MPTFVF+K +V++FSGAN KLR T
Sbjct: 40 KVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRET 99
Query: 65 VLANR 69
+ ++
Sbjct: 100 ITRHK 104
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 87.4 bits (217), Expect = 1e-24
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+LA + P+V+FLKVD DE + +A + I +MPTF+F+K +++ GA D+L+ST+
Sbjct: 60 FADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 119
Query: 66 LANRS 70
+ +
Sbjct: 120 AKHLA 124
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 86.6 bits (215), Expect = 2e-24
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
L+ ++ +V+FL+VDVD+ +D+A ++ SMPTF F K KV +FSGAN +KL +T+
Sbjct: 42 FHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 86.2 bits (214), Expect = 3e-24
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+++++P VFL+VDV + + A +IS+ PTF F ++ +++Q+ GA+ L +
Sbjct: 43 FSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKI 102
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 87.2 bits (216), Expect = 3e-24
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
EL+ +P ++FL +DVDE D + +++I + PTF F++ +V++ GAN +L +
Sbjct: 68 YIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 86.2 bits (214), Expect = 3e-24
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
ELA +FP+V FLKVDVDE + +A +++ +MPTF+F+K V++ GA+ D L + V
Sbjct: 48 FAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLV 107
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 85.9 bits (213), Expect = 5e-24
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
E A +FP +FLKVDVDE +D+A AY++ +MPTF+F+K KV+ G D + + +
Sbjct: 50 FAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKI 109
Query: 66 LA 67
+A
Sbjct: 110 VA 111
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 86.3 bits (214), Expect = 5e-24
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
E A +FP VFLKVDVDE +++A Y++ +MPTF+F+K A+ ++ GA D L++T+
Sbjct: 58 FAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 117
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 85.5 bits (212), Expect = 7e-24
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+LA +FP+ VFLKVDVDE + IA + + +MPTF+F+K ++ GA ++L + V
Sbjct: 56 FADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKV 115
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 84.3 bits (209), Expect = 1e-23
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
M+++ + ++P F K+DVDE D+A ++S+MPT + K+ +V + GAN ++
Sbjct: 45 MIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQA 104
Query: 65 VLAN 68
+ AN
Sbjct: 105 IAAN 108
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 83.9 bits (208), Expect = 2e-23
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+E + + +VF+KVDVDE ++ +I+SMPTF K+ + V+ GAN L+
Sbjct: 47 FYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQL 106
Query: 65 V 65
+
Sbjct: 107 I 107
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 82.8 bits (205), Expect = 6e-23
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
L +L +PDV F+K DVDES DIA ++++MPTFV K + + GAN L
Sbjct: 51 HLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKG 110
Query: 65 V 65
+
Sbjct: 111 I 111
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 82.4 bits (204), Expect = 1e-22
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRS 63
+ + L++++ V+FLKVDVD +A A I++MPTF K K + GA+ DKL++
Sbjct: 45 LFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKA 104
Query: 64 TV 65
V
Sbjct: 105 LV 106
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 81.9 bits (203), Expect = 1e-22
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRS 63
L EL+++F D VV LKVDVDE EDIAM Y+ISSMPTFVF+K+ KVE+F+GAN +L
Sbjct: 41 KLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLED 100
Query: 64 TVLAN 68
+ AN
Sbjct: 101 VIKAN 105
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 83.4 bits (206), Expect = 1e-22
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
++ ELA E P V F+K++ + +++ Y+ISS+PTF+F K++ K+++ GA+ +L
Sbjct: 53 VMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKK 112
Query: 65 V 65
V
Sbjct: 113 V 113
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 82.1 bits (203), Expect = 2e-22
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
++++A EFP V F KVD D + +I + +PTF+ +S + GAN LR
Sbjct: 58 PMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQK 117
Query: 65 V 65
+
Sbjct: 118 L 118
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 80.1 bits (198), Expect = 6e-22
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 5 MLQELASEFPDVVFLKVDVD-ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRS 63
++LA E+ DV+FLK+D + E++ +A I +PTF +K + V + +GA +DKL
Sbjct: 45 KYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLE 104
Query: 64 TVLANRS 70
+ A RS
Sbjct: 105 AIQAARS 111
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 79.7 bits (197), Expect = 1e-21
Identities = 16/68 (23%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 5 MLQELASEF--PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLR 62
+ + +++E +V FL +D DE+ +I+ ++IS++P F+ + +++ SGA+ +
Sbjct: 42 VFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYV 101
Query: 63 STVLANRS 70
S + ++
Sbjct: 102 SLLEDCKN 109
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 78.9 bits (195), Expect = 2e-21
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRST 64
+ +EL+ ++ D +F+KVDVD+ E+ A Y+IS+MPTF+ +K+ KV GA+ K+
Sbjct: 54 LFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDM 112
Query: 65 V 65
+
Sbjct: 113 I 113
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 79.4 bits (196), Expect = 2e-21
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 5 MLQELASEFPDVVFLKVDVD-ESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRS 63
++LA E+ DV+FLK+D + E++ +A I +PTF +K + V + +GA +DKL
Sbjct: 58 KYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLE 117
Query: 64 TVLANRS 70
+ A RS
Sbjct: 118 AIQAARS 124
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 76.0 bits (187), Expect = 7e-20
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK----VEQFSGANFDKLRS 63
+ + V + +DVD + ++I ++PTF F + V GAN + +
Sbjct: 63 KNQLNYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEK 122
Query: 64 TV 65
Sbjct: 123 AF 124
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 75.1 bits (185), Expect = 9e-20
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVK----STAKVEQFSGANFDK 60
+L +A DV F+KVDVD++ + A AY +SS+P FVK ++QF GA+ +
Sbjct: 44 ILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSR 103
Query: 61 LRSTVLANRS 70
+++ + +
Sbjct: 104 IKADIEKFKH 113
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 74.7 bits (184), Expect = 1e-19
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 5 MLQELASEFP--DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLR 62
+ ++++ V F KVDVDE IA I +MPTFVF K+ K++ GA+ KL+
Sbjct: 54 VFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQ 113
Query: 63 STVLANRS 70
+ + + +
Sbjct: 114 AAITQHSA 121
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 61.6 bits (150), Expect = 1e-14
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L + + P V VD + ++ +PT VF++ + FSG
Sbjct: 40 VLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVAKVFSGI 91
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 60.0 bits (146), Expect = 6e-14
Identities = 9/62 (14%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRS 63
+ + + V +++ + + ++IA Y + + PT + + ++ + S + + L
Sbjct: 39 KVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLER 98
Query: 64 TV 65
T+
Sbjct: 99 TI 100
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 59.4 bits (144), Expect = 2e-13
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 1 MSLVMLQELASEFPD--VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ VM+ EL EFP D+++SE I +++ P + SG
Sbjct: 53 DNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGI 110
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 51.9 bits (125), Expect = 6e-11
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ELA ++P V F K++ DE+ DIA Y + S+PT +F K V++ GA
Sbjct: 38 IEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEIIGA 88
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 52.1 bits (125), Expect = 1e-10
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L ELA E+ +V KVD ++ +++A A+ I S+P+ +F+ K E GA
Sbjct: 59 ILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGA 111
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 50.9 bits (122), Expect = 4e-10
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+ELA + + +KV+VDE +A Y + S+PT V + A V + GA
Sbjct: 72 LEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGA 123
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 50.5 bits (121), Expect = 6e-10
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
E A+E V F+KV+ + ++ + I S+PT + ++ ++ +GA
Sbjct: 77 FAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGA 128
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 50.2 bits (120), Expect = 7e-10
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+EL+ E+ + KV+VD+ ++A + I S+PT FV + + GA
Sbjct: 73 LEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGA 124
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 50.3 bits (120), Expect = 7e-10
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L + +S+ VDVD++ +DIS +P+ VF + ++ G+
Sbjct: 44 ILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGS 96
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 49.8 bits (119), Expect = 1e-09
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
Q A+ V K+D +A + I +P F+ ++ + +GA
Sbjct: 86 FQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGA 137
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 47.8 bits (114), Expect = 5e-09
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 6 LQELASEFPD---VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK-VEQFSGA 56
L ++ E + + +++ +++ D+A YD + +PT VF+ G
Sbjct: 48 LSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGL 102
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 47.7 bits (114), Expect = 5e-09
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+++ ++ VV KVD+D+ D+A+ Y++S++PT + +K+ V++F G
Sbjct: 52 RLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGI 104
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 47.4 bits (113), Expect = 8e-09
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ +L + + LKVD+D++E +A + + S+PT + +K+ + +
Sbjct: 64 MDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHF 115
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 47.0 bits (112), Expect = 1e-08
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+E A E+ VF ++++ + A Y + PTF F V + G
Sbjct: 45 YFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQ 97
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 46.5 bits (111), Expect = 1e-08
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+E+A E+ ++ K+DVDE+ AM Y + S+PT + K VE GA
Sbjct: 40 LEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVLVGA 91
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 48.1 bits (114), Expect = 1e-08
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L LA+E+P V F K+ + + +PT + K + F
Sbjct: 154 SLICLAAEYPMVKFCKIKASNT-GAGDRFSSDVLPTLLVYKGGELLSNFISV 204
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 46.2 bits (110), Expect = 1e-08
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ +++A ++ VF +++VDE++ IA Y + ++PT + + V+ GA
Sbjct: 42 IYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVDSLVGA 94
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea}
SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 46.1 bits (110), Expect = 2e-08
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ ELA E+ + K++ DE+ IA Y+I S+PT +F K+ + E GA
Sbjct: 40 IDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 45.3 bits (108), Expect = 2e-08
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKV 50
+++E+A+E PD V ++V E+ AM Y I ++PT V +
Sbjct: 23 VVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVEFI 69
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 46.3 bits (110), Expect = 2e-08
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 5 MLQELASEF--------PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L + + E + + ++ + + PT VF K V++ GA
Sbjct: 52 QLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGA 111
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 45.4 bits (108), Expect = 2e-08
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+ELA+++ LK+DVDE+ A Y++ S+PT + K V++ G
Sbjct: 41 LEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGF 92
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 45.0 bits (107), Expect = 4e-08
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+EL E D + +K+DVDE+++ A Y + S+PT + +K VE G
Sbjct: 39 LEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGF 90
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 45.0 bits (107), Expect = 4e-08
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+E A D V K++VDE+ + + I S+PT + K V+Q G
Sbjct: 39 LEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGY 90
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 45.1 bits (107), Expect = 4e-08
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
L LA +FP+ F+K V+ Y + +PT K+ +F G
Sbjct: 45 LSLLARKFPETKFVKAIVN---SCIQHYHDNCLPTIFVYKNGQIEAKFIG 91
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics; 1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 45.0 bits (107), Expect = 5e-08
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+EL + + F VDV+E + + + + +P ++ K + +G
Sbjct: 44 LEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGKMAGD 95
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 44.6 bits (106), Expect = 5e-08
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ELA E+ V +KV+VDE+ + A Y I S+PT + K+ V++ GA
Sbjct: 41 IEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGA 92
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 44.2 bits (105), Expect = 7e-08
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ E+A E+ D + +K++ DES ++A Y I S+PT + K K E GA
Sbjct: 41 VDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGA 92
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 43.8 bits (104), Expect = 8e-08
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 1 MSLVMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVF 43
M++ ++ E EF D + K+D+ + A+ Y + ++P
Sbjct: 18 MAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 44.3 bits (105), Expect = 9e-08
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+E+A+E + K+DVD + + A + + S+PT + K V++ GA
Sbjct: 52 LEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 103
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 44.2 bits (105), Expect = 9e-08
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+ +A+E+ D + +K+++DE+ A Y + S+PT + + GA
Sbjct: 45 LEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGA 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 45.6 bits (108), Expect = 1e-07
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPDVVFL-KVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L+ LA+++ L K+D D + IA + + ++PT ++ V+ F G
Sbjct: 47 ILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGP 99
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 44.3 bits (104), Expect = 1e-07
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 4 VMLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
V+L EL + FP +V +V + + + ++ P+ V+ + +
Sbjct: 55 VVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTLGVIAKI 108
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase;
1.00A {Acetobacter aceti}
Length = 107
Score = 43.8 bits (104), Expect = 1e-07
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L E+ EF V KV++D++ + AY + S+PT + V+ +++ GA
Sbjct: 41 ALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGA 93
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 45.1 bits (106), Expect = 2e-07
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 5 MLQELASEFPD-----VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
M + A E ++ V+ E + A Y++ ++P V + +F GA
Sbjct: 155 MAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGA 211
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 43.9 bits (104), Expect = 2e-07
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+L E+A E+ + K+++D++ A Y I +PT + K+ GA
Sbjct: 61 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 113
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 43.4 bits (103), Expect = 2e-07
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L E+A E+ + K+++D++ A Y I +PT + K+ GA
Sbjct: 42 LDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 44.6 bits (105), Expect = 2e-07
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
L+ LA+E+P V F K+ + + +PT + K + F
Sbjct: 142 LECLAAEYPMVKFCKIRASNT-GAGDRFSSDVLPTLLVYKGGELISNFIS 190
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 43.7 bits (103), Expect = 2e-07
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
L LA +FP+ F+K V+ Y + +PT K+ +F G
Sbjct: 52 LSVLARKFPETKFVKAIVNS---CIEHYHDNCLPTIFVYKNGQIEGKFIG 98
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 43.6 bits (103), Expect = 2e-07
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 4 VMLQELASEFPD--VVFLKVDVDESE--DIAMAYDISSMPTFVFVKSTAK-VEQFSGA 56
V L +++ + V LK+D+++ E ++ Y + + PT +F+ S+ + V + GA
Sbjct: 49 VFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGA 106
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 43.1 bits (102), Expect = 3e-07
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ A+ + D + +K+++D + Y + +P VK ++ G
Sbjct: 47 INLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGV 98
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 41.7 bits (98), Expect = 9e-07
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L E+A E+ + K+++D++ A Y I +PT + K+ GA
Sbjct: 57 LDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 108
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 42.3 bits (99), Expect = 1e-06
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
M + A + +D E++D+A + + +P V V +F GA
Sbjct: 157 MAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI---NKGVAEFVGA 205
Score = 31.9 bits (72), Expect = 0.008
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 6 LQELASEFPD------VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L+E + + ++ Y + +PT V ++ G
Sbjct: 44 LKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGL 100
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 41.4 bits (97), Expect = 3e-06
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L E+A E+ + K+++D++ A Y I +PT + K+ GA
Sbjct: 52 LDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 103
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 39.7 bits (93), Expect = 6e-06
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVK----STAKVEQFSGA 56
+ LA V KVD I + P+ + + E+ +
Sbjct: 43 FELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINS 98
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 39.2 bits (92), Expect = 8e-06
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ V +VD +I Y + PT + + KV + SG
Sbjct: 48 KKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGG 97
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 39.6 bits (92), Expect = 8e-06
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 4 VMLQELASEFPDVVF--LKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
VM+ EL EFPD + D+++SE I + P + +G
Sbjct: 56 VMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGI 110
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 38.7 bits (90), Expect = 2e-05
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 5 MLQELASEF--PDVVFLKVDVDESEDIAMAYDIS------SMPTFVFVKSTAKVEQFSGA 56
+ +L+ ++ + F KVDV D++ Y +S +PT + + + +
Sbjct: 47 IYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQI 106
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 37.8 bits (88), Expect = 4e-05
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 8 ELASEF-----PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
ASE V VD ++ +A Y I PT + + G
Sbjct: 49 AAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGG 102
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 37.3 bits (87), Expect = 5e-05
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 7 QELASEF--PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ A +V KVDV E ++ + I+++PT K + ++ G
Sbjct: 45 ESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKD-GEFRRYQGP 95
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 36.9 bits (86), Expect = 5e-05
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVK--STAKVEQFSGA 56
+L +E ++ KVD E D+A Y + PT F + TA ++++
Sbjct: 51 GKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAG 102
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 37.5 bits (87), Expect = 7e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
L + P + K+D + +A +D+S PT +K + + G+
Sbjct: 59 NILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKK-GQAVDYEGS 107
Score = 37.5 bits (87), Expect = 7e-05
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+EL+ P + KVD D+A +D+S PT + + ++G
Sbjct: 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK-GRPYDYNGP 222
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 36.2 bits (84), Expect = 1e-04
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 8 ELASEFPDVVFL-KVDVDESEDIAMAYDISSMPTF-VFVKSTAKVEQFSGA 56
+ A+ DVV + V+ D+ + + Y + PT +F + K E + G
Sbjct: 59 KAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGG 109
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 35.9 bits (83), Expect = 2e-04
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 6 LQELASEFPDVVFLKVDV----DESEDIAMAYDISSMPTFVFVKS 46
++ D V L+ +V + + ++ +PT +F
Sbjct: 56 DPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDG 100
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 36.7 bits (84), Expect = 2e-04
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 7 QELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
++ ++ + +D E + Y+I + PT V + + ++ G
Sbjct: 478 RKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS-SIHEYEGH 527
Score = 35.9 bits (82), Expect = 3e-04
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 6 LQELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+E A E + V+ + + ++S P+ +S +++G
Sbjct: 155 WREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGD 206
Score = 35.5 bits (81), Expect = 5e-04
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 6 LQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVK 45
+ LA V KVD I + P+ +
Sbjct: 697 FELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQ 737
Score = 31.6 bits (71), Expect = 0.010
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 7 QELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTF-VFVKSTAKVEQFSGAN 57
+ +A + VD + ++ P + + ++K Q+ N
Sbjct: 586 KRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYN 638
Score = 29.3 bits (65), Expect = 0.058
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
V VD D + + + D ++ T F ++
Sbjct: 272 GLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKS 313
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 35.4 bits (81), Expect = 2e-04
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 8 ELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+ P V L++ + +A ++ PTFV + + + G
Sbjct: 48 DEGRAAP-VQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEG 94
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 35.1 bits (81), Expect = 4e-04
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVE 51
L P + K+D + +A +D+S PT +K V+
Sbjct: 61 STLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVD 105
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 35.0 bits (81), Expect = 4e-04
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 24/87 (27%)
Query: 5 MLQELASEFPDVVFLKVDVDESED-----------------------IAMAYDISSMPTF 41
++ ++A+ P+V F+ V + + + ++ P +
Sbjct: 46 VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAY 105
Query: 42 VFVKSTAKVEQFSGA-NFDKLRSTVLA 67
FV V+ G + D+L V A
Sbjct: 106 AFVDPHGNVDVVRGRMSQDELTRRVTA 132
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 34.7 bits (80), Expect = 5e-04
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 8 ELASEF---PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK 49
L ++ D+V K+D ++ Y + PT F S K
Sbjct: 49 SLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDK 93
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 33.8 bits (78), Expect = 0.001
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 22/61 (36%)
Query: 6 LQELASEFPDVVFLKVDVDESED----------------------IAMAYDISSMPTFVF 43
L ++A+ P V F+ + I Y++ P FVF
Sbjct: 46 LSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVF 105
Query: 44 V 44
Sbjct: 106 Y 106
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 32.7 bits (75), Expect = 0.002
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 8 ELASEF------PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK--VEQFSGA 56
+L+ V ++D ++ D+ +S PT + K ++SG
Sbjct: 57 DLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQ 113
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 32.5 bits (73), Expect = 0.005
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 6 LQELASEF-PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+ A+ V KVD + + Y +S PT + + + G
Sbjct: 43 YEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93
Score = 31.8 bits (71), Expect = 0.009
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 8 ELASEF---PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVE 51
EL + P++V K+D D+ Y++ PT F + K+
Sbjct: 394 ELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLN 439
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 32.0 bits (72), Expect = 0.005
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 5 MLQELASEFPD-VVFLKVDV-------DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+++E + VF+ V D + D ++++PT + + K+ +
Sbjct: 52 VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECL 111
Query: 57 NFDKLR 62
+ +
Sbjct: 112 QANLVE 117
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 31.3 bits (70), Expect = 0.012
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 5 MLQELASEFPD-VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+L ++A + + V VD+ E D Y++ + +F + G
Sbjct: 62 LLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFYRNKHMMIDLG 113
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 31.1 bits (70), Expect = 0.015
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTF-VFVKSTAKVEQFSGA 56
+++E VVF +VD D+ DIA Y IS PT +F ++ G
Sbjct: 50 VIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQ 102
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 31.0 bits (69), Expect = 0.018
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 6 LQELASEF--PDVVFLKVDVDESEDIAMAYDISSMPTFVFVK--STAKVEQFSGA 56
+ A ++ ++D E++D+ M ++I P+ K + G
Sbjct: 53 YVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGP 107
Score = 27.9 bits (61), Expect = 0.23
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 7 QELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVK--STAKVEQFSGA 56
A+ DV+ K+D E++ I PT V ++ + G+
Sbjct: 403 DTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGS 452
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 30.0 bits (68), Expect = 0.030
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMA 32
L++LA ++ L++D+ +
Sbjct: 64 LEDLAKNHSNIHILEIDLRNFDAYDKL 90
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 29.6 bits (67), Expect = 0.038
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 25/64 (39%)
Query: 6 LQELASEFPD--VVFLKVDVDESED-----------------------IAMAYDISSMPT 40
L+EL ++ + F+ + D+++ AY I+ +P
Sbjct: 52 LKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPR 111
Query: 41 FVFV 44
F+ +
Sbjct: 112 FILL 115
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 30.0 bits (66), Expect = 0.039
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVF 43
V+ D+ YDI+ +P F
Sbjct: 81 QIATAAAVNCASEVDLCRKYDINFVPRLFF 110
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 29.5 bits (67), Expect = 0.040
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 24/63 (38%)
Query: 6 LQELASEFPD--VVFLKVDVDESED----------------------IAMAYDISSMPTF 41
+ F V + V+V ES+ + AYD+S +PT
Sbjct: 48 MANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTT 107
Query: 42 VFV 44
+
Sbjct: 108 FLI 110
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 29.6 bits (66), Expect = 0.048
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 7 QELASEF---PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSG 55
+E+A + V +V E+ ++ + ++ P+ + V +
Sbjct: 173 REVALDLSQHKGVAVRRVLNTEA-NVVRKFGVTDFPSCYLLFRNGSVSRVPV 223
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 29.6 bits (66), Expect = 0.050
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 6 LQELASEFPDVVFLKVDVDESEDI-AMAYDISSMPTFVFVKSTAKV-EQFSGANFDK 60
E++ + V + ++ +E + D +P +F+ + KV + N +
Sbjct: 71 STEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNP 127
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide
isomerase, struc genomics, PSI-2, protein structure
initiative; 1.85A {Nitrosomonas europaea}
Length = 216
Score = 29.6 bits (66), Expect = 0.050
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 23 VDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ IS P V T + +G
Sbjct: 162 TLAGFQRVAQWGISGFPALVVESGTDRYLITTGY 195
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 29.2 bits (66), Expect = 0.059
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 24/63 (38%)
Query: 6 LQELASEFPD--VVFLKVDVDESED----------------------IAMAYDISSMPTF 41
+ ++ +++ + V++D Y + MPT
Sbjct: 50 MNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTS 109
Query: 42 VFV 44
+
Sbjct: 110 FLI 112
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 29.2 bits (65), Expect = 0.066
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 23 VDESEDIAMAYDISSMPTFVFVKSTAKV-EQFSGA-NFDKLRSTV 65
+D + Y P + +T V G +++ + V
Sbjct: 150 LDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLV 194
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 29.2 bits (66), Expect = 0.066
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFV 44
++E S + V+ K D+ +D+ +Y I P + V
Sbjct: 80 AIEEDKSYWNQVLLQK---DDVKDVLESYCIVGFPHIILV 116
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 29.2 bits (65), Expect = 0.070
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVE 51
V F VD ++ +A ++ + K +E
Sbjct: 68 KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIE 105
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 28.5 bits (64), Expect = 0.11
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 17 VFLKVDVDESEDIAMA--YDISSMPTFVFVKSTAKVEQ 52
V V VD E +A Y + PTFVF+ A +
Sbjct: 56 VVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWE 93
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 28.5 bits (63), Expect = 0.13
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 8 ELASEF---PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAK--VEQFSGA 56
+L + ++V K+D +E A + S PT F ++A V ++G
Sbjct: 291 KLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADRTVIDYNGE 342
Score = 25.8 bits (56), Expect = 1.4
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKL 61
+ + VV K + + ++ F+ V +F+ K+
Sbjct: 75 FSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKI 130
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 28.0 bits (63), Expect = 0.13
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKV-EQFSGA-NFDKLRS 63
E P + VD + A++ +P + T ++ +G L
Sbjct: 85 AAEHDITQP------IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEK 138
Query: 64 TV 65
V
Sbjct: 139 RV 140
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 28.1 bits (63), Expect = 0.15
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 22 DVDESEDIAMAYDISSMPTFVFV 44
D D + YDI + P +
Sbjct: 96 DSKNHTDFKITYDIYATPVLYVL 118
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 27.6 bits (61), Expect = 0.21
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 17 VFLKVDVDESE--DIAMAYDISSMPTFVFV--KSTAKVEQFSGANFDKLRSTV 65
+F +V D E Y + P + ++ K+ ++ + V
Sbjct: 79 IFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQV 131
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 27.7 bits (61), Expect = 0.22
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 12 EFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVK 45
E D+ F+ VD + +A + +K
Sbjct: 64 EHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLK 97
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 27.5 bits (61), Expect = 0.25
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 21 VDVDESEDIAMAYDISSMPTFVFV 44
+ V + + +++ S+ V +
Sbjct: 114 IMVMDDGSLVEKFNVRSIDYIVIM 137
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 27.3 bits (61), Expect = 0.25
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 28/67 (41%)
Query: 6 LQELASEFP---DVVFLKVDVDESED-------------------------IAMAYDISS 37
L+ L E+ + L + +D + A Y I +
Sbjct: 55 LKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILT 114
Query: 38 MPTFVFV 44
+PT + +
Sbjct: 115 LPTNILL 121
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 27.2 bits (60), Expect = 0.30
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 15 DVVFLKVDVDESED-----------IAMAYDISSMPTFVFVKSTAKV 50
+ ++VD + + Y ++ P VF+ + K
Sbjct: 83 HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQ 129
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 27.4 bits (61), Expect = 0.31
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 24 DESEDIAMAYDISSMPTFVFV 44
+ ++ YD+ +
Sbjct: 100 GKESELYKKYDLRKGFKNFLI 120
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 26.9 bits (60), Expect = 0.33
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 22 DVDESEDIAMAYDISSMPTFVFV 44
D + YD+ ++PT +
Sbjct: 98 DKELVIKNKNLYDLRAIPTLYLL 120
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 26.9 bits (60), Expect = 0.34
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 28/67 (41%)
Query: 6 LQELASEF---PDVVFLKVDVDESE-------------------------DIAMAYDISS 37
L+E+ ++ + L + +D + ++A Y I
Sbjct: 57 LREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK 116
Query: 38 MPTFVFV 44
+P + +
Sbjct: 117 IPANILL 123
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 27.2 bits (59), Expect = 0.38
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 7 QELASEFPDVVFLKVDVDESED--IAMAYDISSMPTFVFVKSTAKVEQFSG 55
++ P + +D E + + ++I+ PT F ++ K +
Sbjct: 57 NDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGAT 107
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 27.1 bits (60), Expect = 0.39
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 22 DVDESEDIAMAYDISSMPTFVFV 44
+ + E + Y + S+PT + +
Sbjct: 113 NRNIVEALTKKYSVESIPTLIGL 135
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 27.1 bits (59), Expect = 0.45
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 5 MLQELASEF-----PDVVFLKVDVDESEDIAMAYDISSMPTFVF 43
+ A E P ++ V+ E+ DIA Y + S+P+
Sbjct: 159 LAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI 202
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 26.6 bits (59), Expect = 0.46
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 22 DVDESEDIAMAYDISSMPTFVFV 44
D E + +D+ S+PT V V
Sbjct: 93 DRKGMEFLTTGFDVKSIPTLVGV 115
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 26.6 bits (59), Expect = 0.46
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 19 LKVDVDESEDIAMAYDISSMPTFVFV 44
L V D IA +IS P++ +
Sbjct: 103 LPVVTDNGGTIAQNLNISVYPSWALI 128
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 26.6 bits (59), Expect = 0.47
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 24 DESEDIAMAYDISSMPTFVFVKSTAKV 50
+ ++ Y I+ +P V VK +
Sbjct: 95 GPASNVTAKYGITGIPALVIVKKDGTL 121
>2ehd_A Oxidoreductase, oxidoreductase, short-chain
dehydrogenase/reducta; rossman fold, structural
genomics, NPPSFA; 2.40A {Thermus thermophilus}
Length = 234
Score = 26.7 bits (60), Expect = 0.51
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMA 32
LQ LA+E + L DV E D A A
Sbjct: 42 LQALAAELEGALPLPGDVREEGDWARA 68
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 26.6 bits (58), Expect = 0.64
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 7 QELASEF---PDVVFLKVDVDESEDIAMAYDISSMPTFVFVK 45
++ A V + D+++++ + YD++ PT + +
Sbjct: 58 RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFR 99
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 26.2 bits (58), Expect = 0.71
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 22 DVDESEDIAMAYDISSMPTFVFV 44
+ + ++ +++ S+PT + V
Sbjct: 93 QSEAVQKLSKHFNVESIPTLIGV 115
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 26.1 bits (58), Expect = 0.75
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 22 DVDESEDIAMAYDISSMPTFVFV 44
+ YDI + PT +
Sbjct: 94 NKAGDIRTRQLYDIRATPTIYLL 116
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 26.1 bits (58), Expect = 0.78
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 27/66 (40%)
Query: 6 LQELASEF---PDVVFLKVDVDESED------------------------IAMAYDISSM 38
L E + + + + DE+E + + + S+
Sbjct: 50 LAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESI 109
Query: 39 PTFVFV 44
PT + +
Sbjct: 110 PTLITI 115
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 26.1 bits (58), Expect = 0.84
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 21/60 (35%)
Query: 6 LQELASEFPD--VVFLKVDVDESE-------------------DIAMAYDISSMPTFVFV 44
+ L FP +V L V+V++ + Y + +P V
Sbjct: 63 MDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIV 122
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 26.1 bits (58), Expect = 0.86
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 24 DESEDIAMAYDISSMPTFVFV 44
D + + A+ PT V +
Sbjct: 93 DADKAVGQAFGTQVYPTSVLI 113
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 26.1 bits (57), Expect = 0.89
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 15 DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRS 63
+F VDV+E + + ++P V + + F+ S
Sbjct: 81 LNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNK---QSQFEWKTS 126
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 25.9 bits (57), Expect = 1.00
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFV 44
+ E +FP V + + Y + P+ +
Sbjct: 88 FIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA 127
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 25.8 bits (56), Expect = 1.1
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 23 VDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANR 69
+ ++E + + P ++ ++Q G K + ++ N+
Sbjct: 185 LSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGNK 231
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 25.7 bits (57), Expect = 1.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 24 DESEDIAMAYDISSMPTFVFV 44
D S + Y + S PT F+
Sbjct: 91 DPSGKLLETYGVRSYPTQAFI 111
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 25.5 bits (56), Expect = 1.2
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFV 44
L E +FP V + AY + P+ + +
Sbjct: 86 FLHEYRIKFP-VGVDQPGDGAMPRTMAAYQMRGTPSLLLI 124
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 25.0 bits (55), Expect = 1.7
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 25/64 (39%)
Query: 6 LQELASEFPD--VVFLKVDVDESED-----------------------IAMAYDISSMPT 40
L+EL +++ ++ +D E Y+++++P+
Sbjct: 57 LRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPS 116
Query: 41 FVFV 44
V
Sbjct: 117 VFLV 120
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative;
1.66A {Chlorobaculum tepidum}
Length = 165
Score = 25.0 bits (55), Expect = 1.7
Identities = 4/30 (13%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 6 LQELASEFPD--VVFLKVDVDESEDIAMAY 33
+ ++ + F+ + V+E Y
Sbjct: 56 MVQVQKTWASRGFTFVGIAVNEQLPNVKNY 85
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 25.0 bits (55), Expect = 1.9
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 24 DESEDIAMAYDISSMPTFVFVKSTAKV-EQFSGA-NFDKLRSTV 65
D ++ Y I ++PT + ++ + G ++L+
Sbjct: 101 DSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 24.8 bits (55), Expect = 2.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIA 30
+ A E P++ + DV + +
Sbjct: 39 SADFAKERPNLFYFHGDVADPLTLK 63
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 24.6 bits (54), Expect = 3.0
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 19 LKVDVDESEDIAMAYDISSMPTFVFV 44
L V +D + + Y + +P +
Sbjct: 88 LPVLLDADKRVGKLYGTTGVPETFVI 113
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown
function, STRU genomics, PSI, MCSG, protein structure
initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Length = 208
Score = 24.2 bits (52), Expect = 3.6
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 23 VDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ +A + ++S P+ V + A
Sbjct: 155 FQDQLSLAKSLGVNSYPSLVLQINDAYFPIEVDY 188
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA
structural genomics center for infectious disease,
adenine; HET: ADE; 2.05A {Brucella melitensis biovar
abortus}
Length = 356
Score = 24.0 bits (52), Expect = 4.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 6 LQELASEFPDVVFLKVD 22
++A +FPDV F
Sbjct: 101 TVKVAKKFPDVKFEHAT 117
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5
P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A*
3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 23.9 bits (52), Expect = 5.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAMAYD 34
+Q+L +E F ++D+D+ + I D
Sbjct: 46 VQQLQAEGLSPRFHQLDIDDLQSIRALRD 74
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 23.8 bits (52), Expect = 5.8
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 6 LQELASEF-PDVVFLKVDVDESEDIAMAYD 34
+ LA E F+ +V + + A +
Sbjct: 67 GKALADELGNRAEFVSTNVTSEDSVLAAIE 96
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 23.7 bits (52), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 4 VMLQELASEFPDVVFLKVDVDESEDIAMAYD 34
V++ +L E D+++++ DV ED+ A
Sbjct: 29 VVVLDLRREGEDLIYVEGDVTREEDVRRAVA 59
>2hqb_A Transcriptional activator of COMK gene; berkeley structure
genomics center target 1957B, structural genomics, PSI;
2.70A {Bacillus halodurans}
Length = 296
Score = 23.8 bits (52), Expect = 6.1
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 6 LQELASEFPDVVFLKVD 22
+ +++PDV F+ +
Sbjct: 78 FSTIHNQYPDVHFVSFN 94
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding
protein, guanosine, TP0319, transport protein; HET:
GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Length = 318
Score = 23.5 bits (51), Expect = 8.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 6 LQELASEFPDVVFLKVD 22
+ E ++ FP FL +D
Sbjct: 77 VIETSARFPKQKFLVID 93
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 23.3 bits (51), Expect = 8.1
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 6 LQELASEF-PDVVFLKVDVDESEDIAMAYD 34
+E A+E V F DV D A
Sbjct: 44 GEEPAAELGAAVRFRNADVTNEADATAALA 73
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein
structure initiative; 2.40A {Klebsiella pneumoniae}
Length = 143
Score = 23.3 bits (51), Expect = 8.4
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 21/54 (38%)
Query: 6 LQELASEFPDVVFLKVDVDESEDIAM-----------AYDISSMPTFVFVKSTA 48
L+ L D +FL DI + + P VF+ TA
Sbjct: 48 LKFLQHNKVDAIFL--------DINIPSLDGVLLAQNISQFAHKPFIVFI--TA 91
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 23.4 bits (51), Expect = 8.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 6 LQELASEF-PDVVFLKVDVDESEDIAMAYD 34
+ A + + VF DV +D+ A
Sbjct: 49 GEAQAKKLGNNCVFAPADVTSEKDVQTALA 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.339
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 989,406
Number of extensions: 47276
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 163
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)