RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11066
(70 letters)
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 44.0 bits (103), Expect = 4e-08
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 22 DVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
DV + + A +IS+ PTF F ++ +++Q+ GA+ L +
Sbjct: 59 DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKI 102
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 43.8 bits (103), Expect = 6e-08
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 4 VMLQELASEFPDV--VFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
VM+ EL EFP D+++SE I +++ P + SG
Sbjct: 50 VMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGI 104
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 42.4 bits (99), Expect = 2e-07
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 1 MSLVMLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDK 60
M L+ ++ +V+FL+VDVD+ +D+A ++ MPTF F K KV +FSGAN +K
Sbjct: 37 MIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96
Query: 61 LRSTV 65
L +T+
Sbjct: 97 LEATI 101
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 42.7 bits (100), Expect = 2e-07
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 4 VMLQELASEFPDVV--FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
VM+ EL EFPD D+++SE I + + P + +G
Sbjct: 56 VMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGI 110
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 40.1 bits (93), Expect = 1e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 24 DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLANRS 70
E++ +A I +PTF +K + V + +GA +DKL + A RS
Sbjct: 66 QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 112
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus
acidocaldarius, formerly Bacillus acidocaldarius
[TaxId: 405212]}
Length = 105
Score = 39.0 bits (90), Expect = 3e-06
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
V K++VDE+ + + I S+PT + K V+Q G
Sbjct: 48 DKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQ 91
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 38.3 bits (88), Expect = 6e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 13 FPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+ +VF+KVDVDE ++ +I+SMPTF K+ + V+ GAN L+ +
Sbjct: 47 YTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 99
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 36.3 bits (83), Expect = 3e-05
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 13 FPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
FP+V FLKVDVDE + +A +++ +MPTF+F+K V++ GA+ D L + V
Sbjct: 55 FPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLV 107
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
containing protein Txnl5) {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 36.0 bits (82), Expect = 5e-05
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 5 MLQELASEFPD-VVFLKVDVDESE-------DIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+++E + VF+ V E D ++++PT + + K+ +
Sbjct: 49 VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECL 108
Query: 57 NFDKLRS 63
+ +
Sbjct: 109 QANLVEM 115
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 35.6 bits (81), Expect = 8e-05
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 16 VVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
V+FLKVDVD +A A I++MPTF K K + GA+ DKL++ V
Sbjct: 57 VIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALV 106
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 111
Score = 34.9 bits (79), Expect = 1e-04
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 14 PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTVLAN 68
+VV LKVDVDE EDIAM Y+ISSMPTFVF+K+ KVE+F+GAN +L + AN
Sbjct: 56 DNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKAN 110
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 35.0 bits (80), Expect = 2e-04
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 5 MLQELASEFPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGAN 57
L+ LA+E+P V F K+ + + +PT + K + F
Sbjct: 141 SLECLAAEYPMVKFCKIRASNTGAGDR-FSSDVLPTLLVYKGGELISNFISVA 192
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 33.3 bits (75), Expect = 5e-04
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 30 AMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
+ +PTF+ +S + GAN LR +
Sbjct: 72 VSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKL 107
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 32.1 bits (72), Expect = 0.001
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1 MSLVMLQELASEFP-DVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NF 58
M +L E+A E+ + K+++D++ A Y I +PT + K+ GA +
Sbjct: 37 MIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSK 96
Query: 59 DKLRSTVLAN 68
+L+ + AN
Sbjct: 97 GQLKEFLDAN 106
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 31.0 bits (69), Expect = 0.004
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 18 FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+K++ DES ++A Y I S+PT + K K E GA
Sbjct: 54 CVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGA 92
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 30.6 bits (68), Expect = 0.005
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 13 FPDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLRSTV 65
P+V+FLKVD DE + +A + I +MPTF+F+K +++ GA D+L+ST+
Sbjct: 57 LPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 29.8 bits (66), Expect = 0.013
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 5 MLQELASEF--PDVVFLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGANFDKLR 62
+L+ A V F VD ++ +A ++ + K +E + D L
Sbjct: 55 ILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLV 114
Query: 63 STVL 66
+L
Sbjct: 115 EFLL 118
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 29.4 bits (65), Expect = 0.017
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 23 VDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTV 65
+D + Y + +P VK ++ G + DKL S +
Sbjct: 60 IDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFL 103
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein
DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 169
Score = 27.1 bits (59), Expect = 0.12
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 23 VDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
+ ++E + + P ++ ++Q G
Sbjct: 124 LSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGL 157
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like
protein {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 85
Score = 25.4 bits (55), Expect = 0.31
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 24 DESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA-NFDKLRSTVLAN 68
+ A+ Y + ++P V +F GA + ++L +
Sbjct: 42 MVDREKAIEYGLMAVPAIAIN----GVVRFVGAPSREELFEAINDE 83
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 24.0 bits (51), Expect = 1.6
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 18 FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQFSGA 56
KVD E D+A Y + PT F ++
Sbjct: 62 LAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYT 100
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 22.9 bits (48), Expect = 3.6
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 18 FLKVDVDESEDIAMAYDISSMPTFVFVKSTAKVEQF 53
L +D +E+ I PT V K E
Sbjct: 66 VLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESV 101
>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 21.8 bits (46), Expect = 9.2
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 1 MSLV---MLQELASEFPDVVF 18
+SL+ ML EL FP +F
Sbjct: 107 LSLIFSHMLAELKGIFPSGLF 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.130 0.339
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 224,293
Number of extensions: 7734
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 23
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)