RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11067
(292 letters)
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 94.6 bits (236), Expect = 9e-24
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 25/202 (12%)
Query: 77 HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTT 136
+ + C + C + KL H+ H +K +PC ++ C K FT+
Sbjct: 3 EKALPVVYKRYIC-----SFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTS 56
Query: 137 LSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV-----SAPYMCDYK 189
L +L H + H G K T C+ GC +F T ++K+H N Y+C ++
Sbjct: 57 LHHLTRHSLTHTGEKNFT--CDSDGCDLRFTT----KANMKKHFNRFHNIKICVYVCHFE 110
Query: 190 GCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHESTKNFKCT 247
CGK+F LK HQ H T C GC K+F +P RL+ H K VH K
Sbjct: 111 NCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD- 167
Query: 248 YDGCKLLFSTKSALKRHNKSKH 269
D C + T + +H H
Sbjct: 168 -DSCSFVGKTWTLYLKHVAECH 188
Score = 79.6 bits (197), Expect = 4e-18
Identities = 53/167 (31%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 75 KIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 134
+ HL KH ++PF C C GF S H L RH +H +K + CD C+ RF
Sbjct: 31 QAHLCKHTGEKPFPC-----KEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCDSDGCDLRF 84
Query: 135 TTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 192
TT +N+K H R K C CG+ F+ Q H H+ PY C ++GC
Sbjct: 85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCD 143
Query: 193 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHE 239
K F L + LK H++VH C K +H H+
Sbjct: 144 KRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 68.0 bits (167), Expect = 5e-14
Identities = 37/170 (21%), Positives = 58/170 (34%), Gaps = 38/170 (22%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
K Y C +C + L+ H+ +H T G K
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKH----T--------GEK----------------- 41
Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVH 238
P+ C +GC K F + L H H T ++ C GC +F +++H+
Sbjct: 42 --PFPCKEEGCEKGFTSLHHLTRHSLTH-TGEKNFTCDSDGCDLRFTTKANMKKHFN-RF 97
Query: 239 --ESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ C ++ C F + LK H + H + CP C K F
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRF 146
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 87.3 bits (217), Expect = 2e-21
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLK 175
D C++ F + L H+ K C GC R+ + K L
Sbjct: 2 TDCRWDG--CSQEFDSQEQLVHHINSEHIHGERKEFV--CHWGGCSRELRPFKAQY-MLV 56
Query: 176 EHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRL 230
H P+ C ++GC KS+ + +LK+H R H T + +C+ GC K F
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDR 115
Query: 231 REHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNK 266
+H H + K + C GC ++ S+L++H K
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 79.9 bits (198), Expect = 1e-18
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 81 HFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCNKRFTTLSN 139
H +++ F C + + F +++ L+ HM H E K + C + C K ++ L N
Sbjct: 29 HGERKEFVCH--WGGCSRELRPFKAQYMLVVHMRRHTGE--KPHKCTFEGCRKSYSRLEN 84
Query: 140 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSN----VSAPYMCDYKGCGK 193
LK H+ H G KP CE GC + F ++ +H N PY+C GC K
Sbjct: 85 LKTHLRSHTGEKPYM--CEHEGCSKAFSN----ASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Query: 194 SFYLMASLKSHQRVH 208
+ +SL+ H +
Sbjct: 139 RYTDPSSLRKHVKTV 153
Score = 75.7 bits (187), Expect = 4e-17
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTS---HDEDK--KCYPCDQKNCNKRFTTLSN 139
+ C F S+ +L+ H+ S H E K C+ + F
Sbjct: 2 TDCRWD-------GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM 54
Query: 140 LKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 197
L +HM RH G KP C GC + + ++ THL+ H+ PYMC+++GC K+F
Sbjct: 55 LVVHMRRHTGEKPHK--CTFEGCRKSYSRLENLKTHLRSHTG-EKPYMCEHEGCSKAFSN 111
Query: 198 MASLKSHQ-RVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVH 238
+ HQ R H +N + VCK GC K++ P LR+H K VH
Sbjct: 112 ASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 58.4 bits (142), Expect = 7e-11
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 183 PYMCDYKGCGKSFYLMASLKSH---QRVHVTNPEDLVCKGCG-----KQFKVPCRLREHY 234
GC + F L H + +H ++ VC G + FK L H
Sbjct: 3 DCRW--DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 235 KAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ H K KCT++GC+ +S LK H +S H + + C C K+F
Sbjct: 60 R-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAF 109
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 76.0 bits (188), Expect = 2e-17
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 119 DKKCYPCDQKNCNKRFTTLSNLKMHMVRHG-KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
+ + C K C K F S ++ H+ HG + C E CG+ F S+ LK H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV--CAE--CGKAFV----ESSKLKRH 53
Query: 178 SNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLRE 232
V P+ C ++GCGK F L +L++H R+H T P GC K+F L+
Sbjct: 54 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 233 H 233
H
Sbjct: 113 H 113
Score = 70.6 bits (174), Expect = 2e-15
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
C +KGC K F ++++ H H VC CGK F +L+ H + VH K
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRH-QLVHTGEK 61
Query: 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM------FPCPLVTCGKSF 286
F+CT++GC FS L+ H +R+ + CP C K F
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTH-------VRIHTGDRPYVCPFDGCNKKF 104
Score = 66.0 bits (162), Expect = 7e-14
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 83 DKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKM 142
+ R C + C F + +H+ +H + + C + C K F S LK
Sbjct: 2 EPRTIAC-----PHKGCTKMFRDNSAMRKHLHTHGP--RVHVCAE--CGKAFVESSKLKR 52
Query: 143 HMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYL 197
H + H G KP C GCG++F +L+ H + PY+C + GC K F
Sbjct: 53 HQLVHTGEKPFQ--CTFEGCGKRFSL----DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 198 MASLKSHQRVH 208
+LKSH H
Sbjct: 107 STNLKSHILTH 117
Score = 29.0 bits (66), Expect = 0.87
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 26/71 (36%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH------------------NKSKHLNMRM--------F 275
+ C + GC +F SA+++H +S L F
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 276 PCPLVTCGKSF 286
C CGK F
Sbjct: 64 QCTFEGCGKRF 74
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 74.9 bits (185), Expect = 4e-17
Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
+ + C CNKR+ LS+L+MH +H T G K
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKH----T--------GEK----------------- 35
Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 240
PY CD+K C + F LK HQR H T + CK C ++F L+ H + H
Sbjct: 36 --PYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDHLKTHTR-THTG 91
Query: 241 TKNFKCTYDGCKLLFSTKSALKRH 264
K F C + C+ F+ L RH
Sbjct: 92 EKPFSCRWPSCQKKFARSDELVRH 115
Score = 72.2 bits (178), Expect = 3e-16
Identities = 43/129 (33%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
RPF C C +F L H H +K Y CD K+C +RF+ LK H
Sbjct: 5 RPFMC-----AYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQ 58
Query: 145 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMA 199
RH G KP C+ C RKF S HLK H+ P+ C + C K F
Sbjct: 59 RRHTGVKPFQ--CKT--CQRKFSR----SDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Query: 200 SLKSHQRVH 208
L H +H
Sbjct: 111 ELVRHHNMH 119
Score = 56.4 bits (137), Expect = 2e-10
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVT--NPEDLVCKGCGKQFKVPCRLREHYKAVHES 240
P+MC Y GC K ++ ++ L+ H R H T P K C ++F +L+ H + H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63
Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM------FPCPLVTCGKSF 286
K F+C C+ FS LK H R F C +C K F
Sbjct: 64 VKPFQCKT--CQRKFSRSDHLKTH-------TRTHTGEKPFSCRWPSCQKKF 106
Score = 29.4 bits (67), Expect = 0.51
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 13/51 (25%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM------FPCPLVTCGKSF 286
+ F C Y GC + S L+ H R + C C + F
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMH-------SRKHTGEKPYQCDFKDCERRF 48
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 70.0 bits (172), Expect = 5e-15
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 24/157 (15%)
Query: 63 NCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH------ 116
+ + + + K C F + H+L+ H+T
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKK-------SCDRTFSTMHELVTHVTMEHVGGPE 54
Query: 117 DEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHL 174
+ CY + K F L H+ H G KP C GCG+ F S +L
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP--CPFPGCGKIFAR----SENL 108
Query: 175 KEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
K H P+ C+++GC + F + K H VH
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 69.6 bits (171), Expect = 6e-15
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 160 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH--------VTN 211
G Q +KQ + K C ++F M L +H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEA-QLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN 271
C GK FK +L H + VH K F C + GC +F+ LK H ++ H
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTG 117
Query: 272 MRMFPCPLVTCGKSF 286
+ F C C + F
Sbjct: 118 EKPFKCEFEGCDRRF 132
Score = 65.4 bits (160), Expect = 2e-13
Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 45/169 (26%)
Query: 105 SKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKP--LTLCCEELGC 160
+ L + +K+C++ F+T+ L H+ G P C C
Sbjct: 9 PIKQELSCKWIDEAQL---SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC 65
Query: 161 GRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC 217
R+ ++ K L H V P+ C + GCGK F +LK H+R H
Sbjct: 66 PREGKSFKA-KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH--------- 115
Query: 218 KGCGKQFKVPCRLREHYKAVHEST--KNFKCTYDGCKLLFSTKSALKRH 264
T K FKC ++GC F+ S K+H
Sbjct: 116 -----------------------TGEKPFKCEFEGCDRRFANSSDRKKH 141
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 60.3 bits (147), Expect = 3e-12
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 184 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHEST 241
Y+C ++ CGK+F LK HQ H T C GC K+F +P RL+ H K VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGY 59
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKH 269
K D C + T + +H H
Sbjct: 60 PCKKD--DSCSFVGKTWTLYLKHVAECH 85
Score = 56.9 bits (138), Expect = 6e-11
Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 32/116 (27%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
Y C +NC K F + LK+H H T
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH------------------------TQQL------- 30
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 238
PY C ++GC K F L + LK H++VH C K +H H
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 38.0 bits (89), Expect = 2e-04
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 59 CPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 118
C NC N K+H H + P++C + C F +L RH H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYEC-----PHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 119 DK--KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K C K +T LK H
Sbjct: 59 YPCKKDDSCSF--VGKTWTLY--LKHVAECH 85
Score = 34.5 bits (80), Expect = 0.005
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 244 FKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ C ++ C F + LK H + H + CP C K F
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRF 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 58.2 bits (142), Expect = 2e-11
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
+ Y C ++C++RF+ +L H+ H G KP C C R F S HL H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ--CRI--CMRNF----SRSDHLTTHI 54
Query: 179 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ CD CG+ F K H ++H
Sbjct: 55 RTHTGEKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 54.0 bits (131), Expect = 7e-10
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
PY C + C + F SL H R+H T + C+ C + F L H + H K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Query: 243 NFKCTYDGCKLLFSTKSALKRH 264
F C C F+ KRH
Sbjct: 62 PFACDI--CGRKFARSDERKRH 81
Score = 25.1 bits (56), Expect = 9.7
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 15/51 (29%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRM------FPCPLVTCGKSF 286
+ + C + C FS +L RH +R+ F C C ++F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-------IRIHTGQKPFQCR--ICMRNF 44
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 58.4 bits (142), Expect = 2e-11
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
++ + CD C K +T S+LK H+ H KP C GC +F + + H ++H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYK--CTWEGCDWRFARSDELTRHYRKH 70
Query: 178 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
+ P+ C C +SF L H + H
Sbjct: 71 TGAK-PFQCGV--CNRSFSRSDHLALHMKRH 98
Score = 50.7 bits (122), Expect = 1e-08
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 44 SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGF 103
S + G + +K+++ C C + K HL H ++P+KC C W F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC-----TWEGCDWRF 57
Query: 104 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+L RH H K + C CN+ F+ +L +HM RH
Sbjct: 58 ARSDELTRHYRKHTGAKP-FQCGV--CNRSFSRSDHLALHMKRH 98
Score = 48.8 bits (117), Expect = 7e-08
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVHES 240
+ CDY GC K + + LK+H R H T + C +GC +F L HY+ H
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYR-KHTG 72
Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNK 266
K F+C C FS L H K
Sbjct: 73 AKPFQC--GVCNRSFSRSDHLALHMK 96
Score = 31.8 bits (73), Expect = 0.066
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ C Y GC +++ S LK H H + + C C F
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRF 57
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 55.2 bits (134), Expect = 2e-10
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
+ CD C K +T S+LK H+ H KP C+ GCG KF + + H ++H
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH--CDWDGCGWKFARSDELTRHYRKH 60
Query: 178 SNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
+ P+ C C ++F L H + H
Sbjct: 61 TGHR-PFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 46.4 bits (111), Expect = 4e-07
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCGKQFKVPCRLREHYKAVHES 240
+ CDY GCGK++ + LK+H R H T + C GCG +F L HY+ H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYR-KHTG 62
Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNK 266
+ F+C C FS L H K
Sbjct: 63 HRPFQCQK--CDRAFSRSDHLALHMK 86
Score = 44.8 bits (107), Expect = 1e-06
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 59 CPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 118
C C T + K HL H ++P+ C + C W F +L RH H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC-----DWDGCGWKFARSDELTRHYRKHTG 62
Query: 119 DKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ + C + C++ F+ +L +HM RH
Sbjct: 63 HRP-FQCQK--CDRAFSRSDHLALHMKRH 88
Score = 32.1 bits (74), Expect = 0.042
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
T C Y GC ++ S LK H H + + C CG F
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKF 47
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 54.8 bits (133), Expect = 7e-10
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
C C+K+F + LK+H +H KP C + CG+ + +L EH
Sbjct: 6 SGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFE--CPK--CGKCYF----RKENLLEHE 55
Query: 179 NVSA------PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLRE 232
+ + C C ++F L+ H H T C C +QF L+
Sbjct: 56 ARNCMNRSEQVFTC--SVCQETFRRRMELRLHMVSH-TGEMPYKCSSCSQQFMQKKDLQS 112
Query: 233 HYKAVH 238
H +H
Sbjct: 113 HMIKLH 118
Score = 48.3 bits (116), Expect = 2e-07
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH--YKAVHES 240
C C K F LK H R H T + C CGK + L EH ++ S
Sbjct: 7 GVEC--PTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ F C+ C+ F + L+ H S H + C +C + F
Sbjct: 64 EQVFTCSV--CQETFRRRMELRLHMVS-HTGEMPYKCS--SCSQQF 104
Score = 41.7 bits (99), Expect = 3e-05
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 23/130 (17%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
+C C F SK+ L H H +K + C + C K + NL H
Sbjct: 6 SGVECP-------TCHKKFLSKYYLKVHNRKHTGEKP-FECPK--CGKCYFRKENLLEHE 55
Query: 145 VRHG-----KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 199
R+ + T C C F+ + H+ H+ PY C C + F
Sbjct: 56 ARNCMNRSEQVFT--CSV--CQETFRRRMELRLHMVSHTG-EMPYKC--SSCSQQFMQKK 108
Query: 200 SLKSHQ-RVH 208
L+SH ++H
Sbjct: 109 DLQSHMIKLH 118
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 53.3 bits (129), Expect = 1e-09
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHM-VRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
PCD C + F+ L H +H K + C E CG+ F + HLKEH
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--CPEPACGKSF----NFKKHLKEH 59
Query: 178 SNV---SAPYMCDYKGCGKSF 195
+ + Y+C++ G S
Sbjct: 60 MKLHSDTRDYICEF--SGPSS 78
Score = 47.2 bits (113), Expect = 1e-07
Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 32/104 (30%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
CD+ GCG+ F L H++ H K
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKY-----------------------------QHIHQK 37
Query: 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+F C C F+ K LK H K H + R + C G S
Sbjct: 38 SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICE--FSGPSS 78
Score = 42.2 bits (100), Expect = 9e-06
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ C + GC +FS + L H K +H++ + F CP CGKSF
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSF 50
Score = 41.0 bits (97), Expect = 2e-05
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
C C F ++ L H +K + C + C K F +LK HM
Sbjct: 6 SGMPCDFPG-----CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 145 VRHG--KPLTLCCEELGCGRKF 164
H + CE G
Sbjct: 61 KLHSDTRDYI--CEF--SGPSS 78
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 55.5 bits (135), Expect = 1e-09
Identities = 58/184 (31%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 86 PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMV 145
P+ C C F L H +H +K Y C + C K F+ +L H
Sbjct: 21 PYACP-------ECGKSFSRSDHLAEHQRTHTGEKP-YKCPE--CGKSFSDKKDLTRHQR 70
Query: 146 RH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMAS 200
H G KP C E CG+ F +L+ H PY C CGKSF +A
Sbjct: 71 THTGEKPYK--CPE--CGKSFS----QRANLRAHQRTHTGEKPYAC--PECGKSFSQLAH 120
Query: 201 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA 260
L++HQR H T + C CGK F L H + H K +KC C FS + A
Sbjct: 121 LRAHQRTH-TGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRDA 176
Query: 261 LKRH 264
L H
Sbjct: 177 LNVH 180
Score = 48.6 bits (117), Expect = 4e-07
Identities = 44/136 (32%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 134 FTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDY 188
S+ G KP C E CG+ F S HL EH PY C
Sbjct: 3 EFGSSSSVAQAALEPGEKPYA--CPE--CGKSFS----RSDHLAEHQRTHTGEKPYKC-- 52
Query: 189 KGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY 248
CGKSF L HQR H T + C CGK F LR H + H K + C
Sbjct: 53 PECGKSFSDKKDLTRHQRTH-TGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPE 110
Query: 249 DGCKLLFSTKSALKRH 264
C FS + L+ H
Sbjct: 111 --CGKSFSQLAHLRAH 124
Score = 43.2 bits (103), Expect = 2e-05
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 25/129 (19%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
+P+KC C F + L H +H +K Y C + C K F+ L++L+ H
Sbjct: 76 KPYKCP-------ECGKSFSQRANLRAHQRTHTGEKP-YACPE--CGKSFSQLAHLRAHQ 125
Query: 145 VRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKSFYLMA 199
H G KP C E CG+ F +L H PY C CGKSF
Sbjct: 126 RTHTGEKPYK--CPE--CGKSFS----REDNLHTHQRTHTGEKPYKC--PECGKSFSRRD 175
Query: 200 SLKSHQRVH 208
+L HQR H
Sbjct: 176 ALNVHQRTH 184
Score = 32.0 bits (74), Expect = 0.13
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 194 SFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKL 253
S + +S + + + C CGK F L EH + H K +KC C
Sbjct: 2 SEFGSSSSVAQAALE-PGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPE--CGK 57
Query: 254 LFSTKSALKRH 264
FS K L RH
Sbjct: 58 SFSDKKDLTRH 68
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 50.6 bits (122), Expect = 1e-08
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ES 240
C + CGK F + L H+ H + + C CG +FK R+ H H
Sbjct: 7 GVAC--EICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSV 62
Query: 241 TKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
K + C C FS L H K H
Sbjct: 63 GKPYICQS--CGKGFSRPDHLNGHIKQVH 89
Score = 33.6 bits (78), Expect = 0.011
Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 22/96 (22%)
Query: 86 PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMV 145
C+ C F + L RH SH +K Y C C RF + H+
Sbjct: 7 GVACE-------ICGKIFRDVYHLNRHKLSHSGEKP-YSCPV--CGLRFKRKDRMSYHVR 56
Query: 146 RH----GKPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
H GKP C+ CG+ F HL H
Sbjct: 57 SHDGSVGKPYI--CQS--CGKGF----SRPDHLNGH 84
Score = 31.3 bits (72), Expect = 0.072
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 18/77 (23%)
Query: 77 HLLKHFDKR------PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD-EDKKCYPCDQKN 129
HL +H K P+ C C F K ++ H+ SHD K Y C
Sbjct: 22 HLNRH--KLSHSGEKPYSCP-------VCGLRFKRKDRMSYHVRSHDGSVGKPYICQS-- 70
Query: 130 CNKRFTTLSNLKMHMVR 146
C K F+ +L H+ +
Sbjct: 71 CGKGFSRPDHLNGHIKQ 87
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 47.8 bits (114), Expect = 8e-08
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK--KCYPCDQKNCNKRFTTLSNLKM 142
+C++ C + K L H H E +PC+ C KRF ++
Sbjct: 6 SGLQCEI-------CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAA 56
Query: 143 HMVRHGKPLTLCCEE 157
H + L L +E
Sbjct: 57 HRSKSHPALLLAPQE 71
Score = 47.4 bits (113), Expect = 1e-07
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL--VCKGCGKQFKVPCRLREHYKAVHES 240
C+ CG + ASL HQR H L C+ CGK+F+ P + H H +
Sbjct: 7 GLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 241 TKNFKCTYDG 250
G
Sbjct: 65 LLLAPQESSG 74
Score = 44.7 bits (106), Expect = 1e-06
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 32/102 (31%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
C+ C ++L H +H + +
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETV---------AAL------------------- 37
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224
+ C++ CGK F S+ +H+ + G
Sbjct: 38 RFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 47.9 bits (115), Expect = 9e-08
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
K + C C + F+ +L H+ H G KP C+ CGRKF S K H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA--CDI--CGRKFAR----SDERKRHR 51
Query: 179 NV--SAPYMCDYKGCGKSFYLMASLKSHQ---RVH 208
++ P + D + L++ +
Sbjct: 52 DIQHILPILEDK--VEELLSKNYHLENEVARLKKL 84
Score = 46.7 bits (112), Expect = 3e-07
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
P+ C C ++F L +H R H T + C CG++F + H H
Sbjct: 3 PFQCRI--CMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI--L 57
Query: 243 NFKCTYDGCKLLFSTKSALKRHNK 266
+ L S L+
Sbjct: 58 PILEDK--VEELLSKNYHLENEVA 79
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 45.8 bits (109), Expect = 3e-07
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 138 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCGKS 194
S + + + C GCG+ + S+HLK H+ P+ C +KGC +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFK----SSHLKAHTRTHTGEKPFSCSWKGCERR 58
Query: 195 FYLMASLKSHQRVH 208
F L H+R H
Sbjct: 59 FARSDELSRHRRTH 72
Score = 40.4 bits (95), Expect = 3e-05
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 31/97 (31%)
Query: 168 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 227
S + S ++C + GCGK+++ + LK+H R H
Sbjct: 3 SGSSGPQIDSSR-IRSHICSHPGCGKTYFKSSHLKAHTRTH------------------- 42
Query: 228 CRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRH 264
E K F C++ GC+ F+ L RH
Sbjct: 43 ---------TGE--KPFSCSWKGCERRFARSDELSRH 68
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 238 HESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
++ C++ GC + S LK H + H + F C C + F
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRF 59
Score = 32.0 bits (73), Expect = 0.028
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 44 SSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGF 103
SS +S + + C C T + K H H ++PF C + C F
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC-----SWKGCERRF 59
Query: 104 FSKHKLLRHMTSH 116
+L RH +H
Sbjct: 60 ARSDELSRHRRTH 72
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 46.3 bits (111), Expect = 4e-07
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
+ C+ C K F+ LK HM H G KP C+ C + HL+ HS
Sbjct: 7 GPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYK--CKT--CDYAAADSSSLNKHLRIHS 60
Query: 179 NVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
+ P+ C + C + + L H R H
Sbjct: 61 D-ERPFKC--QICPYASRNSSQLTVHLRSH 87
Score = 42.4 bits (101), Expect = 1e-05
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTN 211
CE CG+ F LK H PY C K C + +SL H R+H ++
Sbjct: 11 CEV--CGKCFS----RKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIH-SD 61
Query: 212 PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
C+ C + +L H + H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 45.1 bits (108), Expect = 1e-06
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 138 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCG 192
S + K C+ CGR F S +L H PY C C
Sbjct: 3 SGSSGGRLPSKTKKEFI--CKF--CGRHFT----KSYNLLIHERTHTDERPYTC--DICH 52
Query: 193 KSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
K+F L+ H+ +H + + C+ CGK F L H K +H T +
Sbjct: 53 KAFRRQDHLRDHRYIH-SKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTAA 105
Score = 32.4 bits (75), Expect = 0.037
Identities = 31/129 (24%), Positives = 43/129 (33%), Gaps = 45/129 (34%)
Query: 81 HFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCNKRFTTLSN 139
K+ F CK C F + LL H +H DE + Y CD C+K F +
Sbjct: 12 SKTKKEFICK-------FCGRHFTKSYNLLIHERTHTDE--RPYTCDI--CHKAFRRQDH 60
Query: 140 LKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMA 199
L+ H H K P+ C + CGK F
Sbjct: 61 LRDHRYIH------------SKEK-------------------PFKC--QECGKGFCQSR 87
Query: 200 SLKSHQRVH 208
+L H+ +H
Sbjct: 88 TLAVHKTLH 96
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 44.4 bits (106), Expect = 1e-06
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 34/99 (34%)
Query: 108 KLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTM 167
+H +K Y C C+ RFT +KMH+++
Sbjct: 2 SSGSSGRTHSGEKP-YECYI--CHARFTQSGTMKMHILQK-------------------- 38
Query: 168 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR 206
H+ A + C + C + L H R
Sbjct: 39 ---------HTENVAKFHCPH--CDTVIARKSDLGVHLR 66
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVH 238
PY C C F ++K H T E++ C C L H + H
Sbjct: 15 PYECYI--CHARFTQSGTMKMHILQKHT--ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 42.5 bits (101), Expect = 5e-06
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 200 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--ESTKNFKCTYDGCKLLFST 257
S S R H + + C C +F ++ H E+ F C + C + +
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPH--CDTVIAR 57
Query: 258 KSALKRHNKSKH 269
KS L H + +H
Sbjct: 58 KSDLGVHLRKQH 69
Score = 40.2 bits (95), Expect = 4e-05
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 73 TFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH-DEDKKCYPCDQKNCN 131
+ H ++P++C + C F + H+ E+ + C C+
Sbjct: 2 SSGSSGRTHSGEKPYECYI-------CHARFTQSGTMKMHILQKHTENVAKFHCPH--CD 52
Query: 132 KRFTTLSNLKMHM 144
S+L +H+
Sbjct: 53 TVIARKSDLGVHL 65
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.1 bits (102), Expect = 4e-06
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 133 RFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG 192
++NL ++V +P C C R+F + + H++ H+ P+ C C
Sbjct: 2 EPHPMNNLLNYVVPKMRPYA--CPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRI--CM 56
Query: 193 KSFYLMASLKSHQRVH 208
++F L +H R H
Sbjct: 57 RNFSRSDHLTTHIRTH 72
Score = 41.5 bits (98), Expect = 1e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 71 LNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC 130
+N +++ RP+ C C F +L RH+ H K + C C
Sbjct: 6 MNNLLNYVVPK--MRPYAC-----PVESCDRRFSRSDELTRHIRIHTGQKP-FQCRI--C 55
Query: 131 NKRFTTLSNLKMHMVRH 147
+ F+ +L H+ H
Sbjct: 56 MRNFSRSDHLTTHIRTH 72
Score = 41.5 bits (98), Expect = 1e-05
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 171 STHLKEHSNVSA-PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR 229
+L + PY C + C + F L H R+H T + C+ C + F
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDH 64
Query: 230 LREHYK 235
L H +
Sbjct: 65 LTTHIR 70
Score = 38.4 bits (90), Expect = 2e-04
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 105 SKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGR 162
+ LL ++ + Y C ++C++RF+ L H+ H KP C C R
Sbjct: 5 PMNNLLNYVVPKM---RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ--CRI--CMR 57
Query: 163 KFQTMKQYSTHLKEHS 178
F +TH++ H+
Sbjct: 58 NFSRSDHLTTHIRTHT 73
Score = 33.4 bits (77), Expect = 0.008
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ + C + C FS L RH H + F C + C ++F
Sbjct: 18 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRI--CMRNF 59
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 43.2 bits (103), Expect = 6e-06
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTK 242
Y C CGKSF + H +H C CGK+FK+ L H K +H K
Sbjct: 10 LYPCQ---CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIK 64
Query: 243 NFKCTYDGCKLLFSTKSALKRH 264
++C C F + + RH
Sbjct: 65 PYECNI--CAKRFMWRDSFHRH 84
Score = 42.8 bits (102), Expect = 9e-06
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 21/109 (19%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
K YPC C K FT S HM H +P C CG+KF + HL H
Sbjct: 9 KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYG--CGV--CGKKF----KMKHHLVGHM 57
Query: 179 NV---SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224
+ PY C C K F S H+ V + + +
Sbjct: 58 KIHTGIKPYEC--NICAKRFMWRDSF--HRHVT-SCTKSYEAAKAEQNT 101
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 42.1 bits (100), Expect = 7e-06
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 171 STHLKEHSNVSA---PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 227
H HS+++ PY CD C SF +L SH+ VH T + C CG QF P
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDR--CQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRP 58
Query: 228 CRLREH 233
L+ H
Sbjct: 59 ANLKTH 64
Score = 37.0 bits (87), Expect = 5e-04
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 138 SNLKMHMVRHG--KPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA---PYMCDYKGCG 192
+ H KP C+ C F+ Y +L H V PY C CG
Sbjct: 3 HHHHHHSHMTHSDKPYK--CDR--CQASFR----YKGNLASHKTVHTGEKPYRC--NICG 52
Query: 193 KSFYLMASLKSHQRVH 208
F A+LK+H R+H
Sbjct: 53 AQFNRPANLKTHTRIH 68
Score = 25.9 bits (58), Expect = 4.6
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 18/77 (23%)
Query: 77 HLLKHFDKR------PFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC 130
H H P+KC C F K L H T H +K Y C+ C
Sbjct: 4 HHHHH--SHMTHSDKPYKCD-------RCQASFRYKGNLASHKTVHTGEKP-YRCNI--C 51
Query: 131 NKRFTTLSNLKMHMVRH 147
+F +NLK H H
Sbjct: 52 GAQFNRPANLKTHTRIH 68
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 42.5 bits (101), Expect = 8e-06
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 33/116 (28%)
Query: 109 LLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMK 168
+H +K Y C C+K F L MH
Sbjct: 3 SGSSGRTHTGEKP-YACSH--CDKTFRQKQLLDMHF------------------------ 35
Query: 169 QYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224
+ + V A ++C CGK+F ++ H P+ + + G
Sbjct: 36 --KRYHDPNF-VPAAFVC--SKCGKTFTRRNTMARHADNC-AGPDGVEGENSGPSS 85
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDL---VCKGCGKQFKVPCRLREHYKAVHE 239
PY C C K+F L H + + VC CGK F + H
Sbjct: 15 PYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCA 71
Query: 240 STKNFKCT 247
+
Sbjct: 72 GPDGVEGE 79
Score = 33.3 bits (77), Expect = 0.013
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 200 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH----ESTKNFKCTYDGCKLLF 255
S S R H T + C C K F+ L H+K + F C+ C F
Sbjct: 2 SSGSSGRTH-TGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSK--CGKTF 57
Query: 256 STKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ ++ + RH + G S
Sbjct: 58 TRRNTMARHADN-CAGPDGVEGE--NSGPSS 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 35/88 (39%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
C + C+ ++ + L++H H C +
Sbjct: 8 HPEKCSE--CSYSCSSKAALRIHERIH------------CTDR----------------- 36
Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C+Y C ++L H +
Sbjct: 37 --PFKCNY--CSFDTKQPSNLSKHMKKF 60
Score = 40.2 bits (95), Expect = 3e-05
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235
P C C S A+L+ H+R+H C C K P L +H K
Sbjct: 9 PEKCSE--CSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 35.6 bits (83), Expect = 0.001
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 80 KHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSN 139
P KC C + SK L H H D+ + C+ C+ SN
Sbjct: 3 SGSSGHPEKCS-------ECSYSCSSKAALRIHERIHCTDRP-FKCNY--CSFDTKQPSN 52
Query: 140 LKMHMVRH 147
L HM +
Sbjct: 53 LSKHMKKF 60
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.4 bits (96), Expect = 3e-05
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 9/109 (8%)
Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHY 234
Y C C + SH+R+ VC C +F P +EH
Sbjct: 8 ASPVENKEVYQCRL--CNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEH- 61
Query: 235 KAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCG 283
K C C F + ++ RH H M P + G
Sbjct: 62 -ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 160 CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKG 219
C K ++ + +H + N +C Y C F+ + H+ L C
Sbjct: 22 CNAKLSSLLEQGSHERLCRNA---AVCPY--CSLRFFSPELKQEHESKCEYKK--LTCLE 74
Query: 220 CGKQFKVPCRLREHYKAVH 238
C + FK + H VH
Sbjct: 75 CMRTFKSSFSIWRHQVEVH 93
Score = 30.6 bits (68), Expect = 0.17
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 15/94 (15%)
Query: 83 DKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKM 142
+K ++C+L C S + H C C+ RF + +
Sbjct: 13 NKEVYQCRL-------CNAKLSSLLEQGSHERLCRNAAVC-----PYCSLRFFSPELKQE 60
Query: 143 HMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKE 176
H + C E C R F++ H E
Sbjct: 61 HESKCEYKKLTCLE---CMRTFKSSFSIWRHQVE 91
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 40.1 bits (95), Expect = 5e-05
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
+ C C K F S L H++ H +P C+ CG++F + +K+H+ +
Sbjct: 2 FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYP--CQY--CGKRFH----QKSDMKKHTFI 51
Query: 181 ---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C + CGK+F ++L +H R H
Sbjct: 52 HTGEKPHKC--QVCGKAFSQSSNLITHSRKH 80
Score = 39.7 bits (94), Expect = 6e-05
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPED 214
C+ CG+ F+ STHL HS+ + PY C Y CGK F+ + +K H +H T +
Sbjct: 4 CKI--CGKSFKRSSTLSTHLLIHSD-TRPYPCQY--CGKRFHQKSDMKKHTFIH-TGEKP 57
Query: 215 LVCKGCGKQFKVPCRLREH 233
C+ CGK F L H
Sbjct: 58 HKCQVCGKAFSQSSNLITH 76
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 39.4 bits (93), Expect = 7e-05
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
PY C CGK+F + L HQRVH T + C CGK F L H
Sbjct: 14 PYGC--VECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINH 61
Score = 35.1 bits (82), Expect = 0.003
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
C E CG+ F S+ L +H V PY C CGK+F + L +HQR+H
Sbjct: 17 CVE--CGKAFS----RSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIH 65
Score = 31.7 bits (73), Expect = 0.032
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 201 LKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSA 260
+H + + C CGK F L +H + VH K +KC C FS S
Sbjct: 2 SSGSSGIH-SGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKC--LECGKAFSQNSG 57
Query: 261 LKRH 264
L H
Sbjct: 58 LINH 61
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHV-TNPEDLVCKGCGKQFKVPCRLREHYKAVHE 239
Y C C + + +++ H N + C C K+F + H K +H+
Sbjct: 10 TYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 37.1 bits (87), Expect = 4e-04
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 33/86 (38%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSA 182
Y C C++ +T +SN H V NV
Sbjct: 11 YRCKV--CSRVYTHISNFCRHYVTS----------------------------HKRNVK- 39
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C + C K F ++ +H ++
Sbjct: 40 VYPCPF--CFKEFTRKDNMTAHVKII 63
Score = 36.4 bits (85), Expect = 8e-04
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHM-TSHDEDKKCYPCDQKNCNKRFTTLSNLKMH 143
++CK+ C + RH TSH + K YPC C K FT N+ H
Sbjct: 9 HTYRCKV-------CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAH 59
Query: 144 MVRH 147
+
Sbjct: 60 VKII 63
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 217 CKGCGKQFKVPCRLREHYK-AVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
CK C + + HY + + K + C + C F+ K + H K H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIH 64
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.4 bits (91), Expect = 2e-04
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 112 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM--VRHGKPLTLCCEELGCGRKFQTMKQ 169
+ + K + C C+ + TL L +HM H + + R + K+
Sbjct: 10 YGSIFTGASK-FRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 170 YSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSH 204
++ + C Y CG SF + L H
Sbjct: 67 SLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVH 99
Score = 39.4 bits (91), Expect = 2e-04
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 138 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKG--CGKSF 195
S+ K++ C++ C + T+ + + H+ E + S
Sbjct: 5 SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 196 YLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
SL + + L C CG F+ L H
Sbjct: 63 PRKRSLLEMEGKE-DAQKVLKCMYCGHSFESLQDLSVH 99
Score = 32.4 bits (73), Expect = 0.043
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 80 KHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSN 139
H+ + NN P W K LL D +K C C F +L +
Sbjct: 43 GHYRDDNHET----DNNNPKRWSKPRKRSLLEMEGKEDA-QKVLKCMY--CGHSFESLQD 95
Query: 140 LKMHMVRH 147
L +HM++
Sbjct: 96 LSVHMIKT 103
Score = 31.7 bits (71), Expect = 0.080
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 200 SLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAV-HESTKNFKCTYDGCKLLFSTK 258
S K + + T CK C + L H H N + + K +
Sbjct: 6 SGKLYGSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 259 SALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQE 291
+ K ++ C CG SF S Q+
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMY--CGHSFESLQD 95
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 37.9 bits (89), Expect = 2e-04
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 238
++C+ C ++F LK H R H TN + C C + F L H + +H
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSH-TNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 27.8 bits (63), Expect = 0.64
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHM 144
R F C+ C F + L RH SH +K YPC CN+ FT L H
Sbjct: 1 RSFVCE-------VCTRAFARQEHLKRHYRSHTNEKP-YPCGL--CNRAFTRRDLLIRHA 50
Query: 145 VR 146
+
Sbjct: 51 QK 52
Score = 27.5 bits (62), Expect = 0.92
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH-G-KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
+ + C+ C + F +LK H H KP C C R F L H+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYP--CGL--CNRAF----TRRDLLIRHA 50
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 38.8 bits (90), Expect = 2e-04
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 210 TNPEDLVCKGCGKQFKVPCRLREHYKAVH---ESTKNFKCTYDGCKLL---FSTKSALKR 263
K C + F L H H N C ++ C F K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 264 HNKSKHLNMRMFPC 277
H + H + P
Sbjct: 81 HIRV-HTGEKSGPS 93
Score = 36.5 bits (84), Expect = 0.001
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 119 DKKCYPCDQKNCNKRFTTLSNLKMHM----VRHGKPLTLCCEELGCGRKFQTMKQYS--- 171
D+ +K+C++ F+T+ L H+ V + C C R+ ++ K
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 172 THLKEHSNVSAPYMC 186
H++ H+
Sbjct: 80 NHIRVHTG-EKSGPS 93
Score = 34.6 bits (79), Expect = 0.006
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 183 PYMCDYKGCGKSFYLMASLKSH-QRVHVTNPEDLV-------CKGCGKQFKVPCRLREHY 234
K C ++F M L +H HV PE C GK FK +L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 235 KAVHESTKNFKCT 247
+ VH K+ +
Sbjct: 83 R-VHTGEKSGPSS 94
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 38.2 bits (90), Expect = 2e-04
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
Y CD CGKSF + L H+R H T + C CGK F L H
Sbjct: 18 RYKCDE--CGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGH 65
Score = 33.2 bits (77), Expect = 0.012
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCDYKGCGKSFYLMASLKSHQRVH 208
C+E CG+ F +S+ L +H PY C CGK+F + L H RVH
Sbjct: 21 CDE--CGKSFS----HSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVH 69
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.5 bits (85), Expect = 4e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 172 THLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
+ + P+ C + GCG F L H+R H
Sbjct: 2 SSGSSGTG-EKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 32.3 bits (74), Expect = 0.015
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC 277
K F CT+ GC FS L RH + H ++
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRH-RRSHSGVKPSGP 45
Score = 31.1 bits (71), Expect = 0.031
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 112 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+S +K + C C RF+ L H H
Sbjct: 3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSH 37
Score = 28.8 bits (65), Expect = 0.21
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 77 HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCD 126
++PF C C W F +L RH SH K
Sbjct: 3 SGSSGTGEKPFAC-----TWPGCGWRFSRSDELSRHRRSHSGVKP-SGPS 46
Score = 26.5 bits (59), Expect = 1.4
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCD 187
C GCG +F + S H + HS V P
Sbjct: 15 CTWPGCGWRFSRSDELSRHRRSHSGVK-PSGPS 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 41/267 (15%), Positives = 83/267 (31%), Gaps = 101/267 (37%)
Query: 3 VATASSDSEGKTEELNKEIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIV 62
VA A +DS + ++ +A+ L +FI G + +
Sbjct: 281 VAIAETDSW----------ESFFVSVRKAITVL-----FFI----GVRC--YEAYPN--- 316
Query: 63 NCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCM---WGFFSKHKLLRHMTSHDED 119
TS+ + + L ++ + P +P M ++ ++ ++ ++
Sbjct: 317 ----TSLPPSILEDSL-ENNEGVP----------SP-MLSISNL-TQEQVQDYV---NKT 356
Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLC--CEELGCGRKF-------QTMKQY 170
P ++ +L N ++V G P +L L RK Q+ +
Sbjct: 357 NSHLPAGKQ----VEISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPF 409
Query: 171 STHLKEHSN----VSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGC---GKQ 223
S + SN V++P+ + +DLV K
Sbjct: 410 SERKLKFSNRFLPVASPFHSHL---------LVPASDLI------NKDLVKNNVSFNAKD 454
Query: 224 FKVPCRLREHYKAVHESTKNFKCTYDG 250
++P V+ T+DG
Sbjct: 455 IQIP---------VY-------DTFDG 465
Score = 28.9 bits (64), Expect = 2.7
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 43/76 (56%)
Query: 6 ASSDSEGKTEELNKEID----------DEED----------------AITEALQ------ 33
D + KTE++ KEI+ ++ A E L+
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 34 --------SLGINKEY 41
SLG EY
Sbjct: 1755 ADATFAGHSLG---EY 1767
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.4 bits (82), Expect = 7e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
++C +GCGK + + L++H R H
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 31.6 bits (72), Expect = 0.021
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
KK + C + C K + S+L+ H+ H
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 25.8 bits (57), Expect = 2.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
K C GC ++ S L+ H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAH 29
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C+ CG F + +LKSH R+H
Sbjct: 11 PYPCEI--CGTRFRHLQTLKSHLRIH 34
Score = 32.1 bits (74), Expect = 0.014
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K YPC+ C RF L LK H+ H
Sbjct: 10 KPYPCEI--CGTRFRHLQTLKSHLRIH 34
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C CGKSF SL HQR
Sbjct: 11 PYLC--GQCGKSFTQRGSLAVHQRSC 34
Score = 24.5 bits (54), Expect = 6.0
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
Y C Q C K FT +L +H
Sbjct: 10 TPYLCGQ--CGKSFTQRGSLAVHQRSC 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 52/178 (29%)
Query: 129 NCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDY 188
N N+ F K ++ R + + ++Q L+ NV +
Sbjct: 121 NDNQVFA-----KYNVSRL--------------QPYLKLRQALLELRPAKNVLIDGV--- 158
Query: 189 KGCGKSFYLMASLKSHQ-------RVH------VTNPEDLVCKGCGKQFKVPC-RLREHY 234
G GK++ + S++ ++ +PE ++ + + ++ ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-----EMLQKLLYQIDPNW 213
Query: 235 KAVHESTKNFKCTYDGCKLLFSTKSALKRHNKS----------KHLNMRMFPCP-LVT 281
+ + + N K + K + K N C L+T
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Score = 37.9 bits (87), Expect = 0.003
Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 34/202 (16%)
Query: 18 NKEIDDEEDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCNFTSVNLNTFKIH 77
+ D + + + + K+ K+ S P + N + +H
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQP-----------KESTISIPSIYLELKVKLENEYALH 446
Query: 78 --LLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFT 135
++ H+ K + P + +F H + H+ + + ++ + RF
Sbjct: 447 RSIVDHY--NIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRF- 502
Query: 136 TLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSF 195
L K +RH T Q +K Y ++ ++ + F
Sbjct: 503 -LEQ-K---IRHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI----LDF 551
Query: 196 YLMASLKSHQRVHVTNPE-DLV 216
L + + + DL+
Sbjct: 552 -----LPKIEENLICSKYTDLL 568
Score = 27.5 bits (60), Expect = 6.8
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 229 RLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHN---KSKHLNMR-----MFPCPLV 280
++ + T+ + D L++ ++N +L +R + P V
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 281 T------CGKSFL 287
GK+++
Sbjct: 154 LIDGVLGSGKTWV 166
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ CD CGK+F +++L+ HQRVH
Sbjct: 12 SHTCDE--CGKNFCYISALRIHQRVH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C + CGKSF SL H+R+H
Sbjct: 10 VYEC--QECGKSFRQKGSLTLHERIH 33
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C+ CG F +A L++H +H
Sbjct: 11 PYKCET--CGARFVQVAHLRAHVLIH 34
Score = 29.0 bits (66), Expect = 0.19
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 112 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
S +K Y C+ C RF +++L+ H++ H
Sbjct: 2 SSGSSGGEKP-YKCET--CGARFVQVAHLRAHVLIH 34
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C K CGKSF + L HQRVH
Sbjct: 12 PYNC--KECGKSFRWASCLLKHQRVH 35
Score = 27.9 bits (63), Expect = 0.41
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + CK CGK F+ L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C K CG +F SL H R H
Sbjct: 12 PFQC--KECGMNFSWSCSLFKHLRSH 35
Score = 30.6 bits (70), Expect = 0.057
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
S T + CK CG F C L +H + HE T
Sbjct: 2 SSGSSG-TGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
Score = 24.9 bits (55), Expect = 5.8
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 112 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+S +K + C + C F+ +L H+ H
Sbjct: 3 SGSSGTGEKP-FQCKE--CGMNFSWSCSLFKHLRSH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 32.5 bits (75), Expect = 0.008
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F SL H RVH
Sbjct: 11 PYRC--DQCGKAFSQKGSLIVHIRVH 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 33.2 bits (75), Expect = 0.008
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 184 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235
Y+C+ CG + LK H R H T+ C C FK L +H K
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (71), Expect = 0.030
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
CEE CG + + H++ H++ PY C Y C SF +L H +
Sbjct: 4 CEE--CGIRXKKPSMLKKHIRTHTD-VRPYHCTY--CNFSFKTKGNLTKHMKSK 52
Score = 28.9 bits (64), Expect = 0.24
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178
Y C++ C R S LK H+ H C C F+T + H+K +
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKA 53
Score = 27.8 bits (61), Expect = 0.75
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 64 CNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKK 121
C + K H+ H D RP+ C C + F +K L +HM S KK
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCT-------YCNFSFKTKGNLTKHMKSKAHSKK 57
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 32.7 bits (74), Expect = 0.009
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY CD+ GC K+F L H++ H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 25.0 bits (54), Expect = 4.5
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKP 150
Y CD C+K F +L H H +
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 24.6 bits (53), Expect = 5.7
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 85 RPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 118
RP+ C C F H L+RH SH E
Sbjct: 2 RPYSCDHPG-----CDKAFVRNHDLIRHKKSHQE 30
Score = 24.2 bits (52), Expect = 8.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 244 FKCTYDGCKLLFSTKSALKRHNKS 267
+ C + GC F L RH KS
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKS 27
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C K CGKSF L H+R+H
Sbjct: 12 LYNC--KECGKSFSRAPCLLKHERLH 35
Score = 25.2 bits (56), Expect = 4.5
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + CK CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C C F +SL+ HQ VH
Sbjct: 12 TWKCRE--CDMCFSQASSLRLHQNVH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C CG+ F L + L HQR+H
Sbjct: 12 SHQCHE--CGRGFTLKSHLNQHQRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (75), Expect = 0.011
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C + CGK FY + SHQR H
Sbjct: 12 PFKC--EECGKGFYTNSQCYSHQRSH 35
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + C+ CGK F + H + H K +
Sbjct: 2 SSGSSG-SGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 32.5 bits (75), Expect = 0.012
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C CGKSF + + L +HQR+H
Sbjct: 12 PFEC--AECGKSFSISSQLATHQRIH 35
Score = 25.5 bits (57), Expect = 3.1
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F + +L H + +H K +
Sbjct: 2 SSGSSG-TGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 32.6 bits (75), Expect = 0.012
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 183 PYMCDYKGCGKSFYLMASLKSH-QRVHVTNPEDLVCKGCGKQF 224
PY+C CGK F L H ++VH T+ C+
Sbjct: 12 PYICQS--CGKGFSRPDHLNGHIKQVH-TSERPHKCQVWVSGP 51
Score = 31.4 bits (72), Expect = 0.028
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 217 CKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
C+ CGK F P L H K VH S + KC
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 27.9 bits (63), Expect = 0.50
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 235 KAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSF 286
+ K + C C FS L H K H + R C
Sbjct: 4 GSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQ--VWVSGP 51
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 32.1 bits (74), Expect = 0.013
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F L SHQR H
Sbjct: 10 PYEC--SECGKAFNRKDQLISHQRTH 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.013
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F L A L H RVH
Sbjct: 12 PYSC--NVCGKAFVLSAHLNQHLRVH 35
Score = 24.4 bits (54), Expect = 7.9
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F + L +H VH +
Sbjct: 2 SSGSSG-TGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.014
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGKSF + L HQR+H
Sbjct: 12 PYEC--SDCGKSFIKKSQLHVHQRIH 35
Score = 25.6 bits (57), Expect = 3.2
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
S T + C CGK F +L H + +H
Sbjct: 2 SSGSSG-TGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.014
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ CD CGKSF + L H VH
Sbjct: 12 PFKCDI--CGKSFCGRSRLNRHSMVH 35
Score = 25.9 bits (58), Expect = 2.4
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F RL H VH + K +
Sbjct: 2 SSGSSG-TGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 32.1 bits (73), Expect = 0.014
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 182 APYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C + GC K+F +++SH + H
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 31.8 bits (72), Expect = 0.023
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 110 LRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ DK + C C K F N++ H+ H
Sbjct: 7 IDKYVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 29.4 bits (66), Expect = 0.13
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR 273
K F+C + GC F + ++ H ++ HL R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR 47
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.014
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY CD C KSF +SL HQR+H
Sbjct: 12 PYKCDV--CHKSFRYGSSLTVHQRIH 35
Score = 25.9 bits (58), Expect = 2.6
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C C K F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.015
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+CDY CGK+F L A L HQR+H
Sbjct: 12 PYVCDY--CGKAFGLSAELVRHQRIH 35
Score = 25.9 bits (58), Expect = 2.4
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + VC CGK F + L H + +H K +
Sbjct: 2 SSGSSG-SGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.015
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F ++L +HQ++H
Sbjct: 12 PYRC--AECGKAFTDRSNLFTHQKIH 35
Score = 25.2 bits (56), Expect = 4.8
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
S T + C CGK F L H K +H K
Sbjct: 2 SSGSSG-TGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 171 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
S+ + PY C K C K+F + L H+RVH
Sbjct: 5 SSGSGKK-----PYEC--KECRKTFIQIGHLNQHKRVH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C CGK+F ++L HQ++H
Sbjct: 12 PYIC--TVCGKAFTDRSNLIKHQKIH 35
Score = 25.1 bits (56), Expect = 4.9
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
S T +C CGK F L +H K +H K
Sbjct: 2 SSGSSG-TGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.8 bits (73), Expect = 0.016
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+MC + CGK F L+ H+R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.6 bits (62), Expect = 0.47
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRH 147
+ C C KRFT L+ H H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 25.6 bits (57), Expect = 2.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
+ F CT+ C F+ L+RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C C K+F ASL HQRVH
Sbjct: 12 PYEC--DVCRKAFSHHASLTQHQRVH 35
Score = 25.5 bits (57), Expect = 3.7
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C C K F L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 0.016
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C + CGK F L +H VH
Sbjct: 12 PYKC--EECGKGFICRRDLYTHHMVH 35
Score = 27.1 bits (61), Expect = 0.79
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C+ CGK F L H VH K +
Sbjct: 2 SSGSSG-TGEKPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.017
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C CGK F ++ H+R+H
Sbjct: 12 GHRCSD--CGKFFLQASNFIQHRRIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 31.7 bits (73), Expect = 0.017
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C CGKSF +L +HQR+H
Sbjct: 12 PFEC--THCGKSFRAKGNLVTHQRIH 35
Score = 27.1 bits (61), Expect = 0.93
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F+ L H + +H K+ +
Sbjct: 2 SSGSSG-TGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.019
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C + CGKSF + L HQR+H
Sbjct: 12 PHEC--RECGKSFSFNSQLIVHQRIH 35
Score = 25.2 bits (56), Expect = 4.2
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C+ CGK F +L H + +H +
Sbjct: 2 SSGSSG-TGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.020
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGKSF + L+ HQ+ H
Sbjct: 12 PYKC--SDCGKSFTWKSRLRIHQKCH 35
Score = 28.3 bits (64), Expect = 0.31
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F RLR H K H ++ +
Sbjct: 2 SSGSSG-TGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.020
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C+ CGK + +L HQRVH
Sbjct: 12 PYKCED--CGKGYNRRLNLDMHQRVH 35
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + C+ CGK + L H + VH K +
Sbjct: 2 SSGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 31.7 bits (73), Expect = 0.020
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C C K+F L + L HQR H
Sbjct: 12 PYGC--SQCAKTFSLKSQLIVHQRSH 35
Score = 25.6 bits (57), Expect = 3.7
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C C K F + +L H + H K +
Sbjct: 2 SSGSSG-TGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C CGK+F L H+R+H
Sbjct: 12 PFDC--IDCGKAFSDHIGLNQHRRIH 35
Score = 25.6 bits (57), Expect = 3.6
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGKSF + L HQ++H
Sbjct: 12 PYEC--SICGKSFTKKSQLHVHQQIH 35
Score = 25.2 bits (56), Expect = 3.8
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F +L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C CGK+F + ++L HQ++H
Sbjct: 12 PYIC--AECGKAFTIRSNLIKHQKIH 35
Score = 27.9 bits (63), Expect = 0.50
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + +C CGK F + L +H K +H K +
Sbjct: 2 SSGSSG-TGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.7 bits (73), Expect = 0.021
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C CGK+F + L H R H
Sbjct: 12 PYVC--NECGKAFRSKSYLIIHTRTH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.021
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y CD CGK F + L++HQRVH
Sbjct: 12 CYKCDV--CGKEFSQSSHLQTHQRVH 35
Score = 25.2 bits (56), Expect = 4.1
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + C CGK+F L+ H + VH K +
Sbjct: 2 SSGSSG-MGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F SL HQR+H
Sbjct: 12 PYEC--SVCGKAFSHRQSLSVHQRIH 35
Score = 25.2 bits (56), Expect = 5.2
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PYMC CGK+F + +SL +HQ +H
Sbjct: 12 PYMC--NECGKAFSVYSSLTTHQVIH 35
Score = 25.2 bits (56), Expect = 4.4
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
S T + +C CGK F V L H + +H K
Sbjct: 2 SSGSSG-TGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F L SHQR H
Sbjct: 12 PYEC--HECGKAFSRKYQLISHQRTH 35
Score = 24.4 bits (54), Expect = 7.5
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T C CGK F +L H + H K +
Sbjct: 2 SSGSSG-TGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C + CGK+F + L+ HQR+H
Sbjct: 12 PYNC--EECGKAFIHDSQLQEHQRIH 35
Score = 26.0 bits (58), Expect = 2.2
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C+ CGK F +L+EH + +H K +
Sbjct: 2 SSGSSG-TGEKPYNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L HQR+H
Sbjct: 12 PYKC--NECGKVFRHNSYLSRHQRIH 35
Score = 24.4 bits (54), Expect = 7.9
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.022
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C + CGK F + L SHQRVH
Sbjct: 12 PFKC--EECGKRFTQNSQLHSHQRVH 35
Score = 24.8 bits (55), Expect = 6.2
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + C+ CGK+F +L H + VH K +
Sbjct: 2 SSGSSG-SGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.023
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK + L HQRVH
Sbjct: 12 PYKC--VECGKGYKRRLDLDFHQRVH 35
Score = 25.2 bits (56), Expect = 3.9
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + C CGK +K L H + VH K +
Sbjct: 2 SSGSSG-SGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.023
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L +HQR H
Sbjct: 12 PYGC--NECGKTFSQKSILSAHQRTH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.024
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L H + H
Sbjct: 12 PYGC--NECGKNFGRHSHLIEHLKRH 35
Score = 25.9 bits (58), Expect = 2.0
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + C CGK F L EH K H K+ +
Sbjct: 2 SSGSSG-SGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 31.3 bits (72), Expect = 0.024
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C CGK F ++L H ++H
Sbjct: 12 PFKC--VECGKGFSRRSALNVHHKLH 35
Score = 27.1 bits (61), Expect = 0.78
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L H+K +H K +
Sbjct: 2 SSGSSG-TGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C CGK+F ++L HQR+H
Sbjct: 12 HYEC--SECGKAFARKSTLIMHQRIH 35
Score = 24.8 bits (55), Expect = 7.1
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.024
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + +SL +HQ +H
Sbjct: 12 PYEC--NQCGKAFSVRSSLTTHQAIH 35
Score = 26.0 bits (58), Expect = 2.1
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F V L H +A+H K +
Sbjct: 2 SSGSSG-TGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.0 bits (74), Expect = 0.024
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 198 MASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 240
+ LK H V + L C+ C KQFK L H A H +
Sbjct: 38 LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (72), Expect = 0.024
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C C K+F + L HQ+ H
Sbjct: 10 PFGCSC--CEKAFSSKSYLLVHQQTH 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.024
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F A+L HQR+H
Sbjct: 12 PYRC--GECGKAFAQKANLTQHQRIH 35
Score = 25.2 bits (56), Expect = 4.5
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L +H + +H K +
Sbjct: 2 SSGSSG-TGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.025
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C+ CGK F + L H R+H
Sbjct: 12 PFKCNE--CGKGFGRRSHLAGHLRLH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.025
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L HQRVH
Sbjct: 12 PYQC--NECGKAFSQTSKLARHQRVH 35
Score = 24.8 bits (55), Expect = 6.8
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F +L H + VH K +
Sbjct: 2 SSGSSG-TGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.025
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L HQ+ H
Sbjct: 12 PYKC--SDCGKAFTRKSGLHIHQQSH 35
Score = 25.9 bits (58), Expect = 2.1
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L H + H ++ +
Sbjct: 2 SSGSSG-TGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 31.3 bits (72), Expect = 0.026
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L H+R H
Sbjct: 12 PYEC--NECGKAFIWKSLLIVHERTH 35
Score = 24.4 bits (54), Expect = 8.2
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREH 233
S + + C CGK F L H
Sbjct: 2 SSGSSG-SGEKPYECNECGKAFIWKSLLIVH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.026
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F +SL H+R H
Sbjct: 12 PYEC--IECGKAFKTKSSLICHRRSH 35
Score = 24.8 bits (55), Expect = 5.9
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T C CGK FK L H + H K +
Sbjct: 2 SSGSSG-TGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.027
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F +SL HQ H
Sbjct: 12 PYKC--NECGKAFRARSSLAIHQATH 35
Score = 26.3 bits (59), Expect = 1.7
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F+ L H +A H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.029
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C + CGK F + L SHQRVH
Sbjct: 12 PFQC--EECGKRFTQNSHLHSHQRVH 35
Score = 24.8 bits (55), Expect = 6.0
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + C+ CGK+F L H + VH K +
Sbjct: 2 SSGSSG-SGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.029
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGKSF L H H
Sbjct: 12 PYQC--SECGKSFSGSYRLTQHWITH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.031
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C CGKSF A L HQR+H
Sbjct: 12 PHKC--NECGKSFIQSAHLIQHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.3 bits (72), Expect = 0.031
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 171 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
S+ E+ PY C CGK F L SHQ+ H
Sbjct: 5 SSGTGEN-----PYEC--CECGKVFSRKDQLVSHQKTH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 31.0 bits (71), Expect = 0.032
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C C KSF L HQR+H
Sbjct: 12 PYKCSQ--CEKSFSGKLRLLVHQRMH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 31.3 bits (72), Expect = 0.032
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C K CGK+F L HQRVH
Sbjct: 12 PYEC--KECGKAFSQTTHLIQHQRVH 35
Score = 24.8 bits (55), Expect = 6.6
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + CK CGK F L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.032
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F +S HQR+H
Sbjct: 12 PYKC--MECGKAFGDNSSCTQHQRLH 35
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F +H + +H + +
Sbjct: 2 SSGSSG-TGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.032
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C CGK+F ++L HQR+H
Sbjct: 12 HYEC--SECGKAFIQKSTLSMHQRIH 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.033
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 165 QTMKQYSTHLKEHSNVSAPYM 185
Q +K+ LK +++ SAP +
Sbjct: 20 QALKKLQASLKLYADDSAPAL 40
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.034
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L H R H
Sbjct: 12 PYGC--SECGKAFSSKSYLIIHMRTH 35
Score = 24.8 bits (55), Expect = 6.2
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + C CGK F L H + H K +
Sbjct: 2 SSGSSG-AGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.9 bits (71), Expect = 0.036
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C C K+F ++L HQR H
Sbjct: 12 PYEC--NECQKAFNTKSNLMVHQRTH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.036
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L HQR+H
Sbjct: 12 PYKC--NECGKAFSQTSKLARHQRIH 35
Score = 24.4 bits (54), Expect = 7.5
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F +L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.036
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P++C CGK F +L HQ++H
Sbjct: 12 PFIC--SECGKVFTHKTNLIIHQKIH 35
Score = 25.9 bits (58), Expect = 2.2
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T +C CGK F L H K +H + +
Sbjct: 2 SSGSSG-TGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.036
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C K C K+F A L HQ+ H
Sbjct: 12 PYEC--KVCSKAFTQKAHLAQHQKTH 35
Score = 25.2 bits (56), Expect = 3.8
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + CK C K F L +H K H K +
Sbjct: 2 SSGSSG-TGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.037
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C CGKS+ L HQRVH
Sbjct: 12 PFKC--GECGKSYNQRVHLTQHQRVH 35
Score = 24.4 bits (54), Expect = 7.7
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK + L +H + VH K +
Sbjct: 2 SSGSSG-TGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.038
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C K CGK+F L SH R+H
Sbjct: 12 PFKC--KECGKAFRQNIHLASHLRIH 35
Score = 25.2 bits (56), Expect = 3.9
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S + + CK CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-SGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.038
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C + CGK+F + + L H VH
Sbjct: 12 PYKC--QVCGKAFRVSSHLVQHHSVH 35
Score = 25.9 bits (58), Expect = 2.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C+ CGK F+V L +H +VH + +
Sbjct: 2 SSGSSG-TGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.038
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C C K+F ++L HQR H
Sbjct: 12 PFEC--SECQKAFNTKSNLIVHQRTH 35
Score = 25.1 bits (56), Expect = 4.3
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C C K F L H + H K +
Sbjct: 2 SSGSSG-TGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.039
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C + CGK + +L HQ+VH
Sbjct: 12 PYKC--EKCGKGYNSKFNLDMHQKVH 35
Score = 25.2 bits (56), Expect = 3.8
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C+ CGK + L H K VH + +
Sbjct: 2 SSGSSG-TGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.039
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C CGKSF + L H+R+H
Sbjct: 12 PYIC--NECGKSFIQKSHLNRHRRIH 35
Score = 24.8 bits (55), Expect = 6.2
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + +C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.039
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P C CGK+F + L HQR H
Sbjct: 12 PCKC--TECGKAFCWKSQLIMHQRTH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.040
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F ++L +HQ +H
Sbjct: 12 PYKC--NECGKAFRAHSNLTTHQVIH 35
Score = 25.6 bits (57), Expect = 2.8
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.041
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C CGK+F ++L HQ++H
Sbjct: 12 HFEC--TECGKAFTRKSTLSMHQKIH 35
Score = 25.9 bits (58), Expect = 2.3
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L H K +H K +
Sbjct: 2 SSGSSG-TGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.8 bits (70), Expect = 0.042
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C C ++F L HQ++H
Sbjct: 10 PYSC--AECKETFSDNNRLVQHQKMH 33
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.047
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C C K+F +SL HQR+H
Sbjct: 12 LFKC--NECKKTFTQSSSLTVHQRIH 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.0 bits (77), Expect = 0.059
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 205 QRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH--------------ESTKNFKCTYDG 250
+ + NP VC C +F L EH ++ H + ++F +D
Sbjct: 107 KVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLTAWDD 166
Query: 251 CKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLST 289
++L S+ S +L+ + P + + L T
Sbjct: 167 IRILSPDVSSKS---LSAYLDSAVANGPELIIEDTGLCT 202
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.060
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L +HQR+H
Sbjct: 12 PYKC--NECGKVFTQNSHLANHQRIH 35
Score = 24.4 bits (54), Expect = 9.4
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.2 bits (69), Expect = 0.061
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C CGK+F + L HQ++H
Sbjct: 12 SYNC--NECGKAFTRIFHLTRHQKIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.068
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L +H R+H
Sbjct: 12 PYKC--NECGKVFTQNSHLTNHWRIH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 30.2 bits (69), Expect = 0.075
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F L H++ H K +
Sbjct: 2 SSGSSG-TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.9 bits (63), Expect = 0.48
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQR 206
PY C CGK+F SL H R
Sbjct: 12 PYEC--IECGKAFIQNTSLIRHWR 33
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.075
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L H+ +H
Sbjct: 12 PYKC--NECGKVFTQNSHLARHRGIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.075
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L H+RVH
Sbjct: 12 PYKC--NECGKVFTQNSHLARHRRVH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.1 bits (69), Expect = 0.077
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L H+ +H
Sbjct: 12 PYKC--NECGKVFTQNSHLVRHRGIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 30.2 bits (69), Expect = 0.080
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y C CGK F + L HQ++H
Sbjct: 12 RYKC--NECGKVFSRNSQLSQHQKIH 35
Score = 24.8 bits (55), Expect = 7.0
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F +L +H K +H K +
Sbjct: 2 SSGSSG-TGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.081
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F+ L H+R+H
Sbjct: 12 PYKC--SECGKAFHRHTHLNEHRRIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.1 bits (69), Expect = 0.085
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L HQ +H
Sbjct: 12 PYKC--HECGKVFRRNSHLARHQLIH 35
Score = 24.4 bits (54), Expect = 7.5
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 203 SHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCT 247
S T + C CGK F+ L H + +H K +
Sbjct: 2 SSGSSG-TGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.100
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F + L H+ +H
Sbjct: 12 PYKC--NECGKVFTQNSHLARHRGIH 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.4 bits (70), Expect = 0.12
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 75 KIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRF 134
+ H L KR + + T + P + L R + S + + C C F
Sbjct: 31 RYHQLTPEQKRLIRAIVKTLIHNPQL--LDESSYLYRLLASKAISQ--FVC--PLCLMPF 84
Query: 135 TTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV 180
++ +LK H+ C C ++F + H+ + N+
Sbjct: 85 SSSVSLKQHIRYTEHTKV--CPV--CKKEFTSTDSALDHVCKKHNI 126
Score = 30.7 bits (68), Expect = 0.25
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 216 VCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
VC C F L++H + + C CK F++ + H KH
Sbjct: 76 VCPLCLMPFSSSVSLKQH---IRYTEHTKVCPV--CKKEFTSTDSALDHVCKKH 124
Score = 30.7 bits (68), Expect = 0.27
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 72 NTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCN 131
+++ LL F C L C+ F S L +H+ + K C C
Sbjct: 60 SSYLYRLLASKAISQFVCPL-------CLMPFSSSVSLKQHIRYTEHTKVC-----PVCK 107
Query: 132 KRFTTLSNLKMHMVRH 147
K FT+ + H+ +
Sbjct: 108 KEFTSTDSALDHVCKK 123
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.1 bits (72), Expect = 0.23
Identities = 7/81 (8%), Positives = 17/81 (20%), Gaps = 18/81 (22%)
Query: 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 240
Y C C + L +H H + + +
Sbjct: 178 GHGYQCHV--CSAVLFSPLDLDAHVASHGLHGNMTLTS----------------SEIQRH 219
Query: 241 TKNFKCTYDGCKLLFSTKSAL 261
F ++ ++ +
Sbjct: 220 ITEFISSWQNHPIVQVSADVE 240
Score = 30.6 bits (68), Expect = 0.77
Identities = 5/80 (6%), Positives = 13/80 (16%), Gaps = 5/80 (6%)
Query: 112 HMTSHDEDKKCYPCD---QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMK 168
++ P + + + C C +
Sbjct: 137 GNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPL 194
Query: 169 QYSTHLKEHSNVSAPYMCDY 188
H+ H +
Sbjct: 195 DLDAHVASHGLHGNMTLTSS 214
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.7 bits (61), Expect = 0.46
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 118 EDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTL 153
D K + C C +RFT +L +H +H L
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF 37
Score = 24.3 bits (52), Expect = 8.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P++C GCG+ F L H+ H
Sbjct: 6 PFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 28.1 bits (62), Expect = 0.56
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 214 DLVCK--GCGKQFKVPCRLREHYKAVH------ESTKNFKCTYDGCKLLFSTKSALKRHN 265
DL CK C + L+ H H + C ++ C L +++ H
Sbjct: 1 DLKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHI 60
Query: 266 KSKH 269
++H
Sbjct: 61 NAQH 64
Score = 26.2 bits (57), Expect = 3.2
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 184 YMCDYKGCGKSFYLMASLKSH-QRVHV-----TNPEDLVC--KGCGKQFKVPCRLREHYK 235
C +K C +S + L+ H + HV E L C + C + H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 236 AVH 238
A H
Sbjct: 62 AQH 64
Score = 25.0 bits (54), Expect = 8.8
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 125 CDQKNCNKRFTTLSNLKMHMVR-------HGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
C K C + ++L +L+ H+++ L C C H+
Sbjct: 4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.0 bits (64), Expect = 0.58
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 173 HLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE---DLVCKGCGKQFKVPCR 229
H +++ V Y C Y C + H N VC C K
Sbjct: 8 HNQQNKKVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 230 LREHYKAVHESTKNFKCT 247
L EH H +NFK T
Sbjct: 66 LSEHNLKYHPGEENFKLT 83
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 0.59
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 168 KQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVP 227
+Q+ + + +VS P + LK H C CGKQ +
Sbjct: 23 EQWYLEIVDKGSVSCP-----TCQAVGRKTIEGLKKHMENCKQEM--FTCHHCGKQLRSL 75
Query: 228 CRLREHYKAVHESTKNFK 245
++ H A H S +
Sbjct: 76 AGMKYHVMANHNSLPSGP 93
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 27.2 bits (60), Expect = 0.88
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
C+ CGK F + L H+ H
Sbjct: 12 QVACEI--CGKIFRDVYHLNRHKLSH 35
Score = 27.2 bits (60), Expect = 1.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 114 TSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
S +K C+ C K F + +L H + H
Sbjct: 4 GSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSH 35
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 26.3 bits (57), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 216 VCKGCGKQFKVPCRLREHYKAVHESTK 242
VC C K+F RLR H + VH + +
Sbjct: 9 VCALCLKKFVSSIRLRSHIREVHGAAQ 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.4 bits (58), Expect = 1.7
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C C + F L H+R H
Sbjct: 12 PFKCSK--CDRVFTQRNYLVQHERTH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.5 bits (58), Expect = 2.6
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 12/71 (16%)
Query: 138 SNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 197
+ H + C + CG F + ST + MC + C K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSK--CGIIF---IRRSTLSRRK-----TPMC--EKCRKDSCQ 51
Query: 198 MASLKSHQRVH 208
A+L +
Sbjct: 52 EAALNKDEGNE 62
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 28.3 bits (64), Expect = 2.7
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 2 PVATASSDSEGKTEELNKEIDDEEDAIT-EALQSLGINKEYFISSTGGKNSKK 53
PV ++S K+ DA E+L+ L I+ GG ++K
Sbjct: 31 PVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDA----VITCQGGSYTEK 79
>2hx5_A Hypothetical protein; thioesterase/thiol ester
dehydrase-isomerase fold, structura genomics, joint
center for structural genomics, JCSG; 1.50A
{Prochlorococcus marinus} SCOP: d.38.1.1
Length = 152
Score = 27.8 bits (62), Expect = 2.9
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 25 EDAITEALQSLGINKEYFISSTGGKNSKKQQLWSCPIVNCN 65
++ E+L+S G+N G + S+ + PI++C
Sbjct: 35 HESWEESLESYGLN--PADIFPGSRKSEVTPEVALPIIHCQ 73
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 25.0 bits (54), Expect = 3.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 184 YMCDYKGCGKSFYLMASLKSHQRVH 208
Y+C ++ CG+SF L H+++H
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIH 27
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.1 bits (54), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK F L +++H RVH
Sbjct: 3 PYSCS--VCGKRFSLKHQMETHYRVH 26
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 27.2 bits (61), Expect = 4.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 213 EDLVCKGCGKQFKVPCRLREHYKAVHE 239
E+L G K+ KV + +K +E
Sbjct: 15 EEL-YLGKRKKIKVTRKRFIEHKVRNE 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 27.2 bits (61), Expect = 5.2
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 16/77 (20%)
Query: 172 THLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLR 231
L+ N P+ C C Y+ LK + + C+ GK V
Sbjct: 208 KMLQLQEN---PWDCT---CNGIIYMAKWLKKKADEGLGGVDTAGCEKGGK--AV----- 254
Query: 232 EHYKAVHESTKNFKCTY 248
+ E C
Sbjct: 255 ---LEITEKDAASDCVS 268
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 26.0 bits (57), Expect = 6.1
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 212 PEDLVCKGCGKQFKVPCRLREHYKAVHEST 241
+ +VC CG FK L+ H H T
Sbjct: 19 DDHIVCLECGGSFKS---LKRHLTTHHSMT 45
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 24.2 bits (53), Expect = 6.4
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
++C+ C ++F LK H R H
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSH 25
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 26.4 bits (59), Expect = 7.5
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 213 EDLVCKGCGKQFKVPCR 229
EDL G K FK+ +
Sbjct: 12 EDL-FVGKKKSFKIGRK 27
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative
C-like transposable element, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 25.2 bits (54), Expect = 8.6
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 100 MWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+W +F + C C + T+ NL H+ ++
Sbjct: 10 VWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNTS--NLSYHLEKN 55
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 8.7
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 14/49 (28%)
Query: 175 KEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE--DLVCKGCG 221
+ N++ C C + V D+VC CG
Sbjct: 13 RRGPNLNIVLTC--PECK----------VYPPKIVERFSEGDVVCALCG 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 25.7 bits (56), Expect = 9.1
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 251 CKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQEF 292
C + + A+ R +S+ + CP + C + + +
Sbjct: 26 CGHTYE-EDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 23.8 bits (52), Expect = 9.7
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 112 HMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K + C C++ F+ +L +H RH
Sbjct: 2 STRGSTGIKP-FQCPD--CDRSFSRSDHLALHRKRH 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.421
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,164,238
Number of extensions: 230167
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 430
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)