Query psy11068
Match_columns 292
No_of_seqs 302 out of 2092
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:12:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3608|consensus 100.0 9.9E-30 2.1E-34 205.8 12.5 221 52-291 130-367 (467)
2 KOG2462|consensus 100.0 4.8E-30 1E-34 202.4 4.0 127 129-266 135-264 (279)
3 KOG1074|consensus 99.9 5.2E-29 1.1E-33 221.4 4.6 79 127-209 608-692 (958)
4 KOG2462|consensus 99.9 1.5E-28 3.3E-33 194.0 6.1 137 84-235 128-264 (279)
5 KOG3608|consensus 99.9 4.1E-27 8.9E-32 190.6 10.0 212 55-287 176-397 (467)
6 KOG1074|consensus 99.9 5.8E-25 1.3E-29 195.8 1.3 82 152-239 605-692 (958)
7 KOG3623|consensus 99.9 1.1E-23 2.4E-28 184.9 5.7 109 55-176 209-331 (1007)
8 KOG3623|consensus 99.8 2E-21 4.2E-26 171.0 5.5 72 214-291 894-965 (1007)
9 KOG3576|consensus 99.7 5.3E-18 1.2E-22 127.9 3.3 113 150-270 115-237 (267)
10 KOG3576|consensus 99.6 1.1E-15 2.4E-20 115.5 4.8 123 54-211 115-238 (267)
11 PLN03086 PRLI-interacting fact 99.3 3.6E-12 7.8E-17 113.5 8.8 135 127-289 410-554 (567)
12 PHA00733 hypothetical protein 99.2 2.1E-11 4.5E-16 89.0 4.9 82 181-269 38-123 (128)
13 PLN03086 PRLI-interacting fact 99.1 1.5E-10 3.3E-15 103.3 8.3 148 87-270 408-565 (567)
14 PHA00733 hypothetical protein 99.1 2.9E-10 6.3E-15 83.1 5.9 81 150-238 38-123 (128)
15 PHA02768 hypothetical protein; 99.0 5E-10 1.1E-14 67.3 2.9 40 244-290 6-45 (55)
16 PHA02768 hypothetical protein; 98.9 4.2E-10 9E-15 67.7 1.9 43 215-262 6-48 (55)
17 KOG3993|consensus 98.8 3.9E-10 8.5E-15 94.7 -1.1 203 53-272 264-485 (500)
18 KOG3993|consensus 98.7 1.2E-09 2.5E-14 91.9 -2.2 172 56-240 295-484 (500)
19 PF13465 zf-H2C2_2: Zinc-finge 98.7 1E-08 2.2E-13 52.8 1.3 24 261-287 2-25 (26)
20 PF13465 zf-H2C2_2: Zinc-finge 98.6 3.4E-08 7.3E-13 50.8 2.2 25 229-256 1-25 (26)
21 PHA00616 hypothetical protein 98.4 1E-07 2.2E-12 54.6 1.6 33 243-278 1-33 (44)
22 PHA00732 hypothetical protein 98.3 5.8E-07 1.3E-11 59.5 2.8 45 183-235 1-45 (79)
23 PHA00616 hypothetical protein 98.3 4.3E-07 9.2E-12 52.0 1.6 34 214-248 1-34 (44)
24 PF05605 zf-Di19: Drought indu 98.2 2.1E-06 4.6E-11 52.8 4.4 51 214-269 2-53 (54)
25 PHA00732 hypothetical protein 98.1 3.3E-06 7.2E-11 55.9 3.0 46 214-267 1-46 (79)
26 PF05605 zf-Di19: Drought indu 98.0 2E-05 4.3E-10 48.4 4.9 51 183-238 2-53 (54)
27 COG5189 SFP1 Putative transcri 97.9 2.6E-06 5.7E-11 69.5 0.3 53 181-233 347-417 (423)
28 PF00096 zf-C2H2: Zinc finger, 97.8 1.5E-05 3.2E-10 39.6 1.8 16 251-266 6-21 (23)
29 PF00096 zf-C2H2: Zinc finger, 97.7 2.6E-05 5.7E-10 38.7 1.5 23 215-238 1-23 (23)
30 COG5189 SFP1 Putative transcri 97.6 4.1E-05 9E-10 62.7 2.4 25 55-79 348-372 (423)
31 PF13894 zf-C2H2_4: C2H2-type 97.5 7.8E-05 1.7E-09 37.2 2.2 16 251-266 6-21 (24)
32 PF12756 zf-C2H2_2: C2H2 type 97.5 7.6E-05 1.7E-09 52.3 2.8 23 243-267 50-72 (100)
33 PF13894 zf-C2H2_4: C2H2-type 97.5 8E-05 1.7E-09 37.1 2.0 24 215-238 1-24 (24)
34 PF12756 zf-C2H2_2: C2H2 type 97.3 0.00022 4.7E-09 49.9 2.9 71 155-236 2-72 (100)
35 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00019 4.1E-09 37.1 1.7 22 243-266 1-22 (27)
36 PF13912 zf-C2H2_6: C2H2-type 97.1 0.00033 7.1E-09 36.1 1.8 19 99-117 7-25 (27)
37 KOG4173|consensus 96.8 0.00055 1.2E-08 52.7 1.4 85 183-271 79-172 (253)
38 smart00355 ZnF_C2H2 zinc finge 96.7 0.0016 3.6E-08 32.8 2.5 16 251-266 6-21 (26)
39 PF09237 GAGA: GAGA factor; I 96.6 0.0011 2.4E-08 39.0 1.4 18 217-234 27-44 (54)
40 COG5048 FOG: Zn-finger [Genera 96.5 0.00077 1.7E-08 60.3 0.2 64 182-246 385-449 (467)
41 smart00355 ZnF_C2H2 zinc finge 96.4 0.0035 7.7E-08 31.5 2.3 24 215-239 1-24 (26)
42 COG5236 Uncharacterized conser 96.4 0.011 2.4E-07 49.5 6.2 144 56-209 151-305 (493)
43 KOG2231|consensus 96.3 0.013 2.7E-07 54.2 7.0 47 185-238 184-236 (669)
44 PF13909 zf-H2C2_5: C2H2-type 96.1 0.005 1.1E-07 30.6 2.1 9 258-266 12-20 (24)
45 KOG2231|consensus 96.1 0.018 3.8E-07 53.3 6.8 129 99-246 121-274 (669)
46 PF09237 GAGA: GAGA factor; I 96.1 0.0045 9.7E-08 36.4 2.0 38 171-210 12-49 (54)
47 PRK04860 hypothetical protein; 96.0 0.0031 6.7E-08 48.0 1.4 36 214-256 119-154 (160)
48 PF12874 zf-met: Zinc-finger o 96.0 0.005 1.1E-07 30.9 1.6 21 244-266 1-21 (25)
49 COG5048 FOG: Zn-finger [Genera 95.8 0.0019 4.2E-08 57.7 -0.7 148 129-279 294-451 (467)
50 PF13909 zf-H2C2_5: C2H2-type 95.8 0.0082 1.8E-07 29.8 1.9 23 215-238 1-23 (24)
51 PF12874 zf-met: Zinc-finger o 95.7 0.0067 1.5E-07 30.4 1.4 17 99-115 6-22 (25)
52 PF12171 zf-C2H2_jaz: Zinc-fin 95.6 0.0073 1.6E-07 31.0 1.4 22 244-267 2-23 (27)
53 KOG4173|consensus 95.6 0.012 2.5E-07 45.6 2.8 30 149-178 141-170 (253)
54 KOG2482|consensus 95.5 0.036 7.7E-07 46.5 5.7 50 215-266 280-355 (423)
55 COG5236 Uncharacterized conser 95.3 0.031 6.6E-07 46.9 4.6 132 123-270 152-306 (493)
56 PRK04860 hypothetical protein; 95.1 0.012 2.5E-07 44.9 1.6 40 242-290 118-157 (160)
57 PF12171 zf-C2H2_jaz: Zinc-fin 95.0 0.013 2.7E-07 30.1 1.1 17 99-115 7-23 (27)
58 KOG1146|consensus 95.0 0.01 2.2E-07 58.2 1.2 139 130-279 442-623 (1406)
59 PF13913 zf-C2HC_2: zinc-finge 93.6 0.067 1.4E-06 26.8 2.0 18 216-234 4-21 (25)
60 KOG1146|consensus 93.3 0.029 6.3E-07 55.2 0.6 26 240-267 515-540 (1406)
61 smart00451 ZnF_U1 U1-like zinc 92.5 0.081 1.8E-06 28.8 1.5 22 214-235 3-24 (35)
62 PF13913 zf-C2HC_2: zinc-finge 92.3 0.13 2.9E-06 25.8 1.9 20 244-266 3-22 (25)
63 smart00451 ZnF_U1 U1-like zinc 91.7 0.14 2.9E-06 27.9 1.8 23 243-267 3-25 (35)
64 KOG2785|consensus 91.2 0.75 1.6E-05 39.6 6.3 52 214-267 166-242 (390)
65 KOG2482|consensus 90.5 0.32 7E-06 41.0 3.5 89 167-267 128-217 (423)
66 KOG4124|consensus 89.2 0.12 2.5E-06 43.6 0.1 54 149-205 175-232 (442)
67 COG4049 Uncharacterized protei 89.0 0.22 4.7E-06 29.9 1.1 30 210-239 13-42 (65)
68 PF12013 DUF3505: Protein of u 88.8 0.9 2E-05 32.2 4.4 24 244-269 81-108 (109)
69 KOG2893|consensus 86.0 0.24 5.2E-06 39.5 0.1 50 181-238 9-58 (341)
70 cd00350 rubredoxin_like Rubred 85.2 0.58 1.3E-05 25.2 1.3 7 215-221 18-24 (33)
71 PF07800 DUF1644: Protein of u 85.2 4.4 9.6E-05 30.5 6.3 60 214-276 80-139 (162)
72 KOG4377|consensus 80.8 0.74 1.6E-05 39.9 1.0 65 98-165 278-360 (480)
73 PF02892 zf-BED: BED zinc fing 80.5 1.5 3.3E-05 25.3 2.0 22 214-235 16-41 (45)
74 KOG2785|consensus 79.0 3.9 8.4E-05 35.4 4.6 73 57-146 167-242 (390)
75 smart00614 ZnF_BED BED zinc fi 77.7 2.2 4.8E-05 25.4 2.1 24 215-238 19-47 (50)
76 TIGR02098 MJ0042_CXXC MJ0042 f 77.1 1.9 4E-05 23.9 1.6 8 217-224 5-12 (38)
77 PF12013 DUF3505: Protein of u 76.2 6.5 0.00014 27.8 4.6 24 215-238 81-108 (109)
78 KOG2893|consensus 76.0 0.67 1.4E-05 37.1 -0.6 49 213-269 10-58 (341)
79 COG4049 Uncharacterized protei 74.3 1.8 3.9E-05 26.1 1.1 29 239-269 13-41 (65)
80 PF12907 zf-met2: Zinc-binding 73.5 1.9 4.1E-05 24.3 1.0 13 228-240 18-30 (40)
81 TIGR00622 ssl1 transcription f 72.3 6.7 0.00015 27.8 3.7 22 243-266 81-102 (112)
82 PF09986 DUF2225: Uncharacteri 71.2 0.74 1.6E-05 37.1 -1.4 44 213-258 4-61 (214)
83 PF12907 zf-met2: Zinc-binding 69.1 2.8 6E-05 23.7 1.0 32 244-277 2-36 (40)
84 KOG4377|consensus 67.5 2.2 4.7E-05 37.1 0.5 26 244-270 402-427 (480)
85 KOG4167|consensus 67.1 2.5 5.5E-05 39.6 0.9 25 122-148 792-816 (907)
86 PF13717 zinc_ribbon_4: zinc-r 66.7 5.2 0.00011 21.9 1.8 8 215-222 26-33 (36)
87 KOG4124|consensus 65.1 0.79 1.7E-05 38.8 -2.4 54 53-114 175-233 (442)
88 cd00729 rubredoxin_SM Rubredox 64.8 4.4 9.5E-05 21.9 1.2 7 215-221 19-25 (34)
89 KOG2186|consensus 64.2 4.4 9.4E-05 33.0 1.6 46 184-235 4-49 (276)
90 PF11931 DUF3449: Domain of un 62.7 3.4 7.3E-05 32.5 0.7 20 57-78 102-122 (196)
91 PF09538 FYDLN_acid: Protein o 61.9 6.3 0.00014 27.9 1.9 15 213-227 25-39 (108)
92 PF04959 ARS2: Arsenite-resist 61.9 6 0.00013 31.7 2.1 28 212-239 75-102 (214)
93 COG2888 Predicted Zn-ribbon RN 61.1 5.7 0.00012 24.4 1.3 13 214-226 27-39 (61)
94 KOG2636|consensus 60.7 2.5 5.5E-05 37.2 -0.3 23 84-113 399-422 (497)
95 PHA00626 hypothetical protein 60.2 4.8 0.0001 24.4 0.9 14 242-257 22-35 (59)
96 PF13719 zinc_ribbon_5: zinc-r 59.5 8.3 0.00018 21.3 1.8 10 215-224 26-35 (37)
97 PRK09678 DNA-binding transcrip 59.1 2.9 6.2E-05 27.1 -0.2 17 241-257 25-41 (72)
98 COG1592 Rubrerythrin [Energy p 58.1 5.5 0.00012 30.5 1.2 23 214-252 134-156 (166)
99 PF09538 FYDLN_acid: Protein o 56.9 8.3 0.00018 27.3 1.8 14 242-257 25-38 (108)
100 PF15269 zf-C2H2_7: Zinc-finge 56.8 20 0.00042 20.6 2.9 22 57-80 21-42 (54)
101 PF09986 DUF2225: Uncharacteri 52.7 2.8 6.2E-05 33.7 -1.2 44 182-227 4-61 (214)
102 smart00734 ZnF_Rad18 Rad18-lik 52.1 14 0.0003 18.6 1.7 19 245-266 3-21 (26)
103 KOG2186|consensus 50.0 10 0.00022 30.9 1.5 50 56-117 3-52 (276)
104 PRK14890 putative Zn-ribbon RN 49.5 14 0.0003 22.8 1.7 10 214-223 25-34 (59)
105 PF05290 Baculo_IE-1: Baculovi 48.8 12 0.00025 27.4 1.5 14 55-70 79-92 (140)
106 PF02176 zf-TRAF: TRAF-type zi 47.3 13 0.00027 22.8 1.4 7 229-235 25-31 (60)
107 TIGR00373 conserved hypothetic 47.0 23 0.0005 27.0 3.0 18 182-201 108-125 (158)
108 KOG2071|consensus 46.6 17 0.00037 33.6 2.6 14 272-287 511-524 (579)
109 smart00531 TFIIE Transcription 46.0 27 0.00059 26.2 3.3 11 215-225 100-110 (147)
110 smart00659 RPOLCX RNA polymera 45.7 15 0.00032 21.2 1.4 9 214-222 19-27 (44)
111 PRK00464 nrdR transcriptional 45.6 4.1 9E-05 30.8 -1.2 13 215-227 29-41 (154)
112 PF04959 ARS2: Arsenite-resist 44.6 14 0.00029 29.8 1.5 29 240-270 74-102 (214)
113 TIGR02300 FYDLN_acid conserved 43.4 19 0.00041 26.1 1.9 15 213-227 25-39 (129)
114 COG1592 Rubrerythrin [Energy p 42.5 18 0.00039 27.8 1.8 24 243-284 134-157 (166)
115 PRK00398 rpoP DNA-directed RNA 42.2 16 0.00035 21.1 1.2 7 215-221 22-28 (46)
116 PF04606 Ogr_Delta: Ogr/Delta- 41.2 6.7 0.00015 23.0 -0.5 12 275-286 26-37 (47)
117 PF05443 ROS_MUCR: ROS/MUCR tr 39.3 27 0.00058 25.7 2.2 29 53-86 69-97 (132)
118 PF10571 UPF0547: Uncharacteri 38.6 16 0.00036 18.3 0.7 10 216-225 16-25 (26)
119 COG1996 RPC10 DNA-directed RNA 38.4 15 0.00033 21.8 0.7 7 215-221 25-31 (49)
120 TIGR00373 conserved hypothetic 37.7 43 0.00093 25.5 3.3 18 213-230 108-125 (158)
121 PF09723 Zn-ribbon_8: Zinc rib 37.5 11 0.00024 21.4 -0.0 7 215-221 27-33 (42)
122 PRK06266 transcription initiat 37.3 21 0.00046 27.8 1.5 17 213-229 116-132 (178)
123 smart00531 TFIIE Transcription 37.0 24 0.00051 26.5 1.7 39 240-287 96-134 (147)
124 smart00834 CxxC_CXXC_SSSS Puta 36.2 14 0.0003 20.5 0.3 8 215-222 27-34 (41)
125 TIGR02605 CxxC_CxxC_SSSS putat 35.7 15 0.00032 21.8 0.4 6 216-221 28-33 (52)
126 PF03604 DNA_RNApol_7kD: DNA d 33.9 39 0.00084 18.0 1.7 10 214-223 17-26 (32)
127 PF07800 DUF1644: Protein of u 33.2 1E+02 0.0022 23.4 4.4 60 53-122 77-137 (162)
128 PF08790 zf-LYAR: LYAR-type C2 31.3 11 0.00024 19.4 -0.6 8 217-224 3-10 (28)
129 PF13878 zf-C2H2_3: zinc-finge 30.6 53 0.0011 18.5 2.1 9 216-224 15-23 (41)
130 KOG1280|consensus 30.2 44 0.00096 28.8 2.4 29 212-240 77-105 (381)
131 PF04780 DUF629: Protein of un 29.8 36 0.00078 30.9 1.9 28 243-272 57-84 (466)
132 KOG0717|consensus 29.4 33 0.00071 30.8 1.6 22 57-80 293-314 (508)
133 KOG3408|consensus 29.2 32 0.0007 24.7 1.2 25 84-115 55-79 (129)
134 PF13451 zf-trcl: Probable zin 28.6 37 0.00081 20.1 1.2 13 214-226 4-16 (49)
135 COG4530 Uncharacterized protei 27.4 39 0.00085 23.7 1.3 12 213-224 25-36 (129)
136 PF13963 Transpos_assoc: Trans 26.6 1.6E+02 0.0034 19.2 4.1 33 122-154 37-70 (77)
137 KOG4167|consensus 26.4 21 0.00046 33.9 -0.1 28 150-179 790-817 (907)
138 PF04780 DUF629: Protein of un 25.7 50 0.0011 30.0 2.1 26 215-240 58-83 (466)
139 PRK06266 transcription initiat 24.8 70 0.0015 24.9 2.5 17 151-169 116-132 (178)
140 KOG2593|consensus 24.6 81 0.0017 28.2 3.1 17 182-200 127-143 (436)
141 KOG3408|consensus 23.9 53 0.0012 23.6 1.5 24 151-176 56-79 (129)
142 PF11789 zf-Nse: Zinc-finger o 23.8 42 0.00092 20.5 0.9 12 214-225 24-35 (57)
143 KOG3002|consensus 22.9 1.2E+02 0.0026 25.8 3.8 46 159-208 115-162 (299)
144 COG4957 Predicted transcriptio 22.2 96 0.0021 22.8 2.6 24 57-85 77-100 (148)
145 KOG2593|consensus 22.2 80 0.0017 28.2 2.6 39 148-194 124-162 (436)
146 KOG1842|consensus 22.0 51 0.0011 29.5 1.4 27 215-241 16-42 (505)
147 KOG3002|consensus 21.6 1.1E+02 0.0024 26.1 3.2 49 219-271 115-165 (299)
148 KOG1280|consensus 21.4 84 0.0018 27.1 2.5 41 84-132 77-117 (381)
149 PF13821 DUF4187: Domain of un 20.6 1.2E+02 0.0026 18.5 2.4 14 217-230 30-43 (55)
150 PTZ00448 hypothetical protein; 20.3 1.9E+02 0.004 25.5 4.4 23 56-80 314-336 (373)
151 KOG1842|consensus 20.3 59 0.0013 29.1 1.4 30 242-273 14-43 (505)
No 1
>KOG3608|consensus
Probab=99.96 E-value=9.9e-30 Score=205.75 Aligned_cols=221 Identities=25% Similarity=0.491 Sum_probs=195.3
Q ss_pred CCCCcccccCCCCcccccChHHHHhHHhhccC------------CCc-cccccCCCCcccccccccchHHHHHhHhhcCC
Q psy11068 52 KKQQLWSCPIVNCNFTSVNLNTFKIHLLKHFD------------KRP-FKCKLTTANNTPCMWGFFSKHKLLRHMTSHDE 118 (292)
Q Consensus 52 ~~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~------------~~~-~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~ 118 (292)
.....|.|.+-.|+..|.+...|..|+..|.. ++| +.|...+ |-+.|.++..|++|+++|.+
T Consensus 130 ~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~-----Ct~~~~~k~~LreH~r~Hs~ 204 (467)
T KOG3608|consen 130 ALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAM-----CTKHMGNKYRLREHIRTHSN 204 (467)
T ss_pred cchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchh-----hhhhhccHHHHHHHHHhcCC
Confidence 34557999999999999999999999987752 223 6777744 99999999999999999999
Q ss_pred CCCCccCCCcccchhcCChHHHHHHHHhc--CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccC
Q psy11068 119 DKKCYPCDQKNCNKRFTTLSNLKMHMVRH--GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFY 196 (292)
Q Consensus 119 ~~~~~~c~c~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~ 196 (292)
+ +...|+ .|+..|.++..|..|+++- -...+|+|.. |.+.|.+...|..|+..|.. .|+|+. |+.+..
T Consensus 205 e-KvvACp--~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~--C~KrFaTeklL~~Hv~rHvn---~ykCpl--Cdmtc~ 274 (467)
T KOG3608|consen 205 E-KVVACP--HCGELFRTKTKLFDHLRRQTELNTNSFQCAQ--CFKRFATEKLLKSHVVRHVN---CYKCPL--CDMTCS 274 (467)
T ss_pred C-eEEecc--hHHHHhccccHHHHHHHhhhhhcCCchHHHH--HHHHHhHHHHHHHHHHHhhh---cccccc--cccCCC
Confidence 9 666777 8999999999999998864 3457899999 99999999999999999964 499988 999999
Q ss_pred CHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCC--CCc
Q psy11068 197 LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLN--MRM 274 (292)
Q Consensus 197 ~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~--~~~ 274 (292)
..++|..|++.-|...+||+|..|++.|.+.+.|.+|.. +|+ +..|.|..+.|..+|.+...|++|++.+|.| +.+
T Consensus 275 ~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~-~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~ 352 (467)
T KOG3608|consen 275 SASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ-VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPIL 352 (467)
T ss_pred ChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH-hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCc
Confidence 999999999987788999999999999999999999999 898 6779998888999999999999999988865 456
Q ss_pred CCCCCccCCcccccccC
Q psy11068 275 FPCPLVTCGKSFLSTQE 291 (292)
Q Consensus 275 ~~C~~~~C~~~f~~~~~ 291 (292)
|.|.. |++.|.+-..
T Consensus 353 Y~CH~--Cdr~ft~G~~ 367 (467)
T KOG3608|consen 353 YACHC--CDRFFTSGKS 367 (467)
T ss_pred eeeec--chhhhccchh
Confidence 99998 9999976443
No 2
>KOG2462|consensus
Probab=99.96 E-value=4.8e-30 Score=202.43 Aligned_cols=127 Identities=33% Similarity=0.671 Sum_probs=86.8
Q ss_pred ccchhcCChHHHHHHHHhcCC---CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHH
Q psy11068 129 NCNKRFTTLSNLKMHMVRHGK---PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQ 205 (292)
Q Consensus 129 ~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~ 205 (292)
.|++.+.+.++|.+|..+|.. .+.+.|.. |++.|.+...|..|+++|. .+.+|.+ ||+.|...+.|+-|+
T Consensus 135 eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~--C~K~YvSmpALkMHirTH~---l~c~C~i--CGKaFSRPWLLQGHi 207 (279)
T KOG2462|consen 135 ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKY--CGKVYVSMPALKMHIRTHT---LPCECGI--CGKAFSRPWLLQGHI 207 (279)
T ss_pred ccccccccccccchhhcccccccccccccCCC--CCceeeehHHHhhHhhccC---CCccccc--ccccccchHHhhccc
Confidence 677777777777777776633 45566766 7777777777777777664 4466666 777777777777777
Q ss_pred HHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhh
Q psy11068 206 RVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 206 ~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
++| +|++||.|+.|+|+|..+++|+.||+ +|.+.++|+|.. |+|+|+..+.|.+|..
T Consensus 208 RTH-TGEKPF~C~hC~kAFADRSNLRAHmQ-THS~~K~~qC~~--C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 208 RTH-TGEKPFSCPHCGKAFADRSNLRAHMQ-THSDVKKHQCPR--CGKSFALKSYLNKHSE 264 (279)
T ss_pred ccc-cCCCCccCCcccchhcchHHHHHHHH-hhcCCccccCcc--hhhHHHHHHHHHHhhh
Confidence 776 66677777777777777777777766 676666777755 7777777777766665
No 3
>KOG1074|consensus
Probab=99.95 E-value=5.2e-29 Score=221.40 Aligned_cols=79 Identities=28% Similarity=0.523 Sum_probs=71.7
Q ss_pred CcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCC---CCceeCC---CCCCCcccCCHHH
Q psy11068 127 QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNV---SAPYMCD---YKGCGKSFYLMAS 200 (292)
Q Consensus 127 c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---~~~~~C~---~~~C~~~f~~~~~ 200 (292)
|-+|-+...-+++|+.|.++|+++++|+|.+ ||++|.++.+|+.|+-.|... .-++.|+ + |-+.|.+.-.
T Consensus 608 CiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn~V~ 683 (958)
T KOG1074|consen 608 CIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTNAVT 683 (958)
T ss_pred eeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhh--hccccccccc
Confidence 8899999999999999999999999999999 999999999999999988641 2457887 7 9999999999
Q ss_pred HHHHHHHhc
Q psy11068 201 LKSHQRVHV 209 (292)
Q Consensus 201 l~~H~~~h~ 209 (292)
|..|+++|.
T Consensus 684 lpQhIriH~ 692 (958)
T KOG1074|consen 684 LPQHIRIHL 692 (958)
T ss_pred ccceEEeec
Confidence 999999985
No 4
>KOG2462|consensus
Probab=99.95 E-value=1.5e-28 Score=193.95 Aligned_cols=137 Identities=28% Similarity=0.578 Sum_probs=124.2
Q ss_pred CCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchh
Q psy11068 84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRK 163 (292)
Q Consensus 84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~ 163 (292)
...|+|.. |++.+.+.++|.+|.++|......-...|+.|+|.|.+..+|..|+++|+ .++.|.+ ||+.
T Consensus 128 ~~r~~c~e-------Cgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~i--CGKa 196 (279)
T KOG2462|consen 128 HPRYKCPE-------CGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGI--CGKA 196 (279)
T ss_pred CCceeccc-------cccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCccccc--cccc
Confidence 35589998 99999999999999999976433334444499999999999999999997 6889999 9999
Q ss_pred ccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHH
Q psy11068 164 FQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235 (292)
Q Consensus 164 f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~ 235 (292)
|.....|+-|+++|+| +|||.|.. |++.|..+++|+.||++| .+.+.|+|..|+|+|...+.|.+|..
T Consensus 197 FSRPWLLQGHiRTHTG-EKPF~C~h--C~kAFADRSNLRAHmQTH-S~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 197 FSRPWLLQGHIRTHTG-EKPFSCPH--CGKAFADRSNLRAHMQTH-SDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred ccchHHhhcccccccC-CCCccCCc--ccchhcchHHHHHHHHhh-cCCccccCcchhhHHHHHHHHHHhhh
Confidence 9999999999999998 99999988 999999999999999999 77789999999999999999999976
No 5
>KOG3608|consensus
Probab=99.94 E-value=4.1e-27 Score=190.63 Aligned_cols=212 Identities=25% Similarity=0.473 Sum_probs=187.4
Q ss_pred CcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCC-CCCccCCCcccchh
Q psy11068 55 QLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDED-KKCYPCDQKNCNKR 133 (292)
Q Consensus 55 ~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~c~c~~C~~~ 133 (292)
-.+.|.+..|-+.+.++..|++|++.|++++...|+. ||.-|.++..|..|++..+.. +.+|.|. .|.|.
T Consensus 176 pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~-------Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~--~C~Kr 246 (467)
T KOG3608|consen 176 PVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH-------CGELFRTKTKLFDHLRRQTELNTNSFQCA--QCFKR 246 (467)
T ss_pred ceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch-------HHHHhccccHHHHHHHhhhhhcCCchHHH--HHHHH
Confidence 3588999999999999999999999999999999998 999999999999999877653 2567777 89999
Q ss_pred cCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCC
Q psy11068 134 FTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPE 213 (292)
Q Consensus 134 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~ 213 (292)
|.+...|..|+..|. ..|+|+. |+.+....++|..|++.-+...+||+|+. |++.|.+.+.|++|..+| . +.
T Consensus 247 FaTeklL~~Hv~rHv--n~ykCpl--Cdmtc~~~ssL~~H~r~rHs~dkpfKCd~--Cd~~c~~esdL~kH~~~H-S-~~ 318 (467)
T KOG3608|consen 247 FATEKLLKSHVVRHV--NCYKCPL--CDMTCSSASSLTTHIRYRHSKDKPFKCDE--CDTRCVRESDLAKHVQVH-S-KT 318 (467)
T ss_pred HhHHHHHHHHHHHhh--hcccccc--cccCCCChHHHHHHHHhhhccCCCccccc--hhhhhccHHHHHHHHHhc-c-cc
Confidence 999999999999995 5799999 99999999999999987555599999998 999999999999999998 4 57
Q ss_pred CcccCC--CcccccChhHHHHHHHHhcCCC--CcccCCcCCccccccCHHHHHhHhhhhcC-----CCCcCCCCCccCCc
Q psy11068 214 DLVCKG--CGKQFKVPCRLREHYKAVHEST--KNFKCTYDGCKLLFSTKSALKRHNKSKHL-----NMRMFPCPLVTCGK 284 (292)
Q Consensus 214 ~~~C~~--C~~~f~~~~~L~~H~~~~H~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~~H~-----~~~~~~C~~~~C~~ 284 (292)
.|+|.. |..+|++...|++|++.+|.|. -+|+|-. |++.|.+-.+|.+|+...|. |-+.|...+ |..
T Consensus 319 ~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~--~ed 394 (467)
T KOG3608|consen 319 VYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKV--DED 394 (467)
T ss_pred ceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec--chhhhccchhHHHHHHHhhcccCCCCCCceeeee--ccC
Confidence 899988 9999999999999999888654 4699988 99999999999999988884 444455555 665
Q ss_pred ccc
Q psy11068 285 SFL 287 (292)
Q Consensus 285 ~f~ 287 (292)
.|.
T Consensus 395 G~m 397 (467)
T KOG3608|consen 395 GFM 397 (467)
T ss_pred cee
Confidence 554
No 6
>KOG1074|consensus
Probab=99.90 E-value=5.8e-25 Score=195.84 Aligned_cols=82 Identities=27% Similarity=0.570 Sum_probs=74.2
Q ss_pred cccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcC---CCCCcccC---CCccccc
Q psy11068 152 TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVT---NPEDLVCK---GCGKQFK 225 (292)
Q Consensus 152 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~~~~C~---~C~~~f~ 225 (292)
+-+|.+ |-+...-++.|+.|.++|+| ++||+|.+ ||+.|.++.+|+.|+.+|.. ...++.|+ +|-+.|.
T Consensus 605 PNqCii--C~rVlSC~saLqmHyrtHtG-ERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft 679 (958)
T KOG1074|consen 605 PNQCII--CLRVLSCPSALQMHYRTHTG-ERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT 679 (958)
T ss_pred ccceee--eeecccchhhhhhhhhcccC-cCcccccc--ccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence 468999 99999999999999999998 99999999 99999999999999999832 23568899 9999999
Q ss_pred ChhHHHHHHHHhcC
Q psy11068 226 VPCRLREHYKAVHE 239 (292)
Q Consensus 226 ~~~~L~~H~~~~H~ 239 (292)
..-.|..|++ +|.
T Consensus 680 n~V~lpQhIr-iH~ 692 (958)
T KOG1074|consen 680 NAVTLPQHIR-IHL 692 (958)
T ss_pred ccccccceEE-eec
Confidence 9999999998 885
No 7
>KOG3623|consensus
Probab=99.89 E-value=1.1e-23 Score=184.92 Aligned_cols=109 Identities=29% Similarity=0.632 Sum_probs=94.3
Q ss_pred CcccccCCCCcccccChHHHHhHHhhcc--CCCccccccCCCCcccccccccchHHHHHhHhhcCCCC------------
Q psy11068 55 QLWSCPIVNCNFTSVNLNTFKIHLLKHF--DKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDK------------ 120 (292)
Q Consensus 55 ~~~~C~~~~C~~~~~~~~~l~~H~~~h~--~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~------------ 120 (292)
..+.|++ |...+.....|+.|++--+ .+..|.|.. |.++|..+..|.+||.+|....
T Consensus 209 qlltcpy--cdrgykrltslkeHikyrhekne~nfsC~l-------CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~l 279 (1007)
T KOG3623|consen 209 QLLTCPY--CDRGYKRLTSLKEHIKYRHEKNEPNFSCML-------CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALL 279 (1007)
T ss_pred hhhcchh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchh-------hhhhhhhHHHHHHHHHhhcCCCcccccccchhhh
Confidence 4589996 9999999999999987433 345699999 9999999999999999985431
Q ss_pred CCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhh
Q psy11068 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKE 176 (292)
Q Consensus 121 ~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 176 (292)
+-|+|. .|+|.|..+-.|+.|+|+|.|+++|.|.. |++.|....++..||..
T Consensus 280 RKFKCt--ECgKAFKfKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 280 RKFKCT--ECGKAFKFKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred cccccc--ccchhhhhHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence 236666 99999999999999999999999999999 99999999999999754
No 8
>KOG3623|consensus
Probab=99.84 E-value=2e-21 Score=170.96 Aligned_cols=72 Identities=28% Similarity=0.575 Sum_probs=67.6
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcccccccC
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQE 291 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~ 291 (292)
+|.|++|+|+|...++|.+|.- -|+|.|||+|.+ |.|+|..+..|..|+| .|.|||||.|+. |+|+|+-+++
T Consensus 894 myaCDqCDK~FqKqSSLaRHKY-EHsGqRPyqC~i--CkKAFKHKHHLtEHkR-LHSGEKPfQCdK--ClKRFSHSGS 965 (1007)
T KOG3623|consen 894 MYACDQCDKAFQKQSSLARHKY-EHSGQRPYQCII--CKKAFKHKHHLTEHKR-LHSGEKPFQCDK--CLKRFSHSGS 965 (1007)
T ss_pred cchHHHHHHHHHhhHHHHHhhh-hhcCCCCcccch--hhHhhhhhhhhhhhhh-hccCCCcchhhh--hhhhcccccc
Confidence 3999999999999999999977 899999999987 9999999999999999 899999999999 9999987654
No 9
>KOG3576|consensus
Probab=99.70 E-value=5.3e-18 Score=127.90 Aligned_cols=113 Identities=33% Similarity=0.596 Sum_probs=89.1
Q ss_pred CCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhH
Q psy11068 150 PLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCR 229 (292)
Q Consensus 150 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~ 229 (292)
...|.|.+ |++.|..+.-|.+|++-|.. .+.|.|.. ||+.|...-.|++|+++| +|-+||+|..|+++|+.+.+
T Consensus 115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~-vkr~lct~--cgkgfndtfdlkrh~rth-tgvrpykc~~c~kaftqrcs 188 (267)
T KOG3576|consen 115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSD-VKRHLCTF--CGKGFNDTFDLKRHTRTH-TGVRPYKCSLCEKAFTQRCS 188 (267)
T ss_pred CCeeeeeh--hhhhhhHHHHHHHHhhhccH-HHHHHHhh--ccCcccchhhhhhhhccc-cCccccchhhhhHHHHhhcc
Confidence 45677888 88888888888888888876 67788877 888888888888888888 67788888888888888888
Q ss_pred HHHHHHHhcCC----------CCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068 230 LREHYKAVHES----------TKNFKCTYDGCKLLFSTKSALKRHNKSKHL 270 (292)
Q Consensus 230 L~~H~~~~H~~----------~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~ 270 (292)
|..|++.+|.. .+.|.|. +||.+-.....+..|++.+|.
T Consensus 189 leshl~kvhgv~~~yaykerr~kl~vce--dcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 189 LESHLKKVHGVQHQYAYKERRAKLYVCE--DCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred HHHHHHHHcCchHHHHHHHhhhheeeec--ccCCCCCChhHHHHHHHhcCC
Confidence 88888878852 4568884 488888888888888885553
No 10
>KOG3576|consensus
Probab=99.59 E-value=1.1e-15 Score=115.49 Aligned_cols=123 Identities=26% Similarity=0.461 Sum_probs=68.8
Q ss_pred CCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchh
Q psy11068 54 QQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKR 133 (292)
Q Consensus 54 ~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~ 133 (292)
...|.|.+ |++.|.-...|.+|++-|.+.+.|-|.. ||+.|.....|++|+++|+|. +||+|. .|++.
T Consensus 115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lct~-------cgkgfndtfdlkrh~rthtgv-rpykc~--~c~ka 182 (267)
T KOG3576|consen 115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLCTF-------CGKGFNDTFDLKRHTRTHTGV-RPYKCS--LCEKA 182 (267)
T ss_pred CCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHHhh-------ccCcccchhhhhhhhccccCc-cccchh--hhhHH
Confidence 33455554 5555555555555555555555555555 555555555555555555555 455555 55555
Q ss_pred cCChHHHHHHHHh-cCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCC
Q psy11068 134 FTTLSNLKMHMVR-HGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTN 211 (292)
Q Consensus 134 f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~ 211 (292)
|..+..|..|++. |.....|.-.. . ..+-|.|+. ||.+-.....+..|++.||..
T Consensus 183 ftqrcsleshl~kvhgv~~~yayke--------------------r-r~kl~vced--cg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 183 FTQRCSLESHLKKVHGVQHQYAYKE--------------------R-RAKLYVCED--CGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred HHhhccHHHHHHHHcCchHHHHHHH--------------------h-hhheeeecc--cCCCCCChhHHHHHHHhcCCC
Confidence 5555555555443 22211111110 0 145678865 888877777788888777543
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.34 E-value=3.6e-12 Score=113.53 Aligned_cols=135 Identities=21% Similarity=0.495 Sum_probs=103.7
Q ss_pred CcccchhcCChHHHHHHHHhcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHH
Q psy11068 127 QKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQR 206 (292)
Q Consensus 127 c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 206 (292)
|+.|..... ...|..|..... ...-.|+..+|+..|... .+ +..+.|+. |++.|. ...|..|+.
T Consensus 410 C~NC~~~i~-l~~l~lHe~~C~-r~~V~Cp~~~Cg~v~~r~-el----------~~H~~C~~--Cgk~f~-~s~LekH~~ 473 (567)
T PLN03086 410 CRNCKHYIP-SRSIALHEAYCS-RHNVVCPHDGCGIVLRVE-EA----------KNHVHCEK--CGQAFQ-QGEMEKHMK 473 (567)
T ss_pred CCCCCCccc-hhHHHHHHhhCC-CcceeCCcccccceeecc-cc----------ccCccCCC--CCCccc-hHHHHHHHH
Confidence 347877655 445678875543 344568744599988432 21 55679988 999996 678999999
Q ss_pred HhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc----------CHHHHHhHhhhhcCCCCcCC
Q psy11068 207 VHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS----------TKSALKRHNKSKHLNMRMFP 276 (292)
Q Consensus 207 ~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~----------~~~~l~~H~~~~H~~~~~~~ 276 (292)
++| .++.|+ |++.+ .+..|..|+. .|.+.+++.|++ |++.|. ....|..|.. .+ +.+++.
T Consensus 474 ~~H---kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~-~C-G~rt~~ 543 (567)
T PLN03086 474 VFH---EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHES-IC-GSRTAP 543 (567)
T ss_pred hcC---CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHH-hc-CCcceE
Confidence 985 689999 99755 6789999987 899999999988 999985 2458999998 44 899999
Q ss_pred CCCccCCcccccc
Q psy11068 277 CPLVTCGKSFLST 289 (292)
Q Consensus 277 C~~~~C~~~f~~~ 289 (292)
|.. ||+.|..+
T Consensus 544 C~~--Cgk~Vrlr 554 (567)
T PLN03086 544 CDS--CGRSVMLK 554 (567)
T ss_pred ccc--cCCeeeeh
Confidence 998 99998765
No 12
>PHA00733 hypothetical protein
Probab=99.20 E-value=2.1e-11 Score=89.04 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=61.0
Q ss_pred CCceeCCCCCCCcccCCHHHHHHH--HHH--hcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068 181 SAPYMCDYKGCGKSFYLMASLKSH--QRV--HVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS 256 (292)
Q Consensus 181 ~~~~~C~~~~C~~~f~~~~~l~~H--~~~--h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~ 256 (292)
.+++.|.+ |...|.....|..+ +.. .+.+.+||.|+.|++.|.....|..|++ .| ..+|.|.. |++.|.
T Consensus 38 ~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~--CgK~F~ 110 (128)
T PHA00733 38 QKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR-YT--EHSKVCPV--CGKEFR 110 (128)
T ss_pred hhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh-cC--CcCccCCC--CCCccC
Confidence 56678877 88777776666665 211 1234678888888888888888888877 55 45688877 888888
Q ss_pred CHHHHHhHhhhhc
Q psy11068 257 TKSALKRHNKSKH 269 (292)
Q Consensus 257 ~~~~l~~H~~~~H 269 (292)
....|.+|+...|
T Consensus 111 ~~~sL~~H~~~~h 123 (128)
T PHA00733 111 NTDSTLDHVCKKH 123 (128)
T ss_pred CHHHHHHHHHHhc
Confidence 8888888888655
No 13
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.13 E-value=1.5e-10 Score=103.29 Aligned_cols=148 Identities=21% Similarity=0.447 Sum_probs=107.4
Q ss_pred cccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccchhccC
Q psy11068 87 FKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQT 166 (292)
Q Consensus 87 ~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 166 (292)
..|+. |.+.. ...+|..|.....-. ...|+-..|+..|. +..|..| +.|.. |++.|.
T Consensus 408 V~C~N-------C~~~i-~l~~l~lHe~~C~r~--~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~--Cgk~f~- 464 (567)
T PLN03086 408 VECRN-------CKHYI-PSRSIALHEAYCSRH--NVVCPHDGCGIVLR-VEEAKNH---------VHCEK--CGQAFQ- 464 (567)
T ss_pred EECCC-------CCCcc-chhHHHHHHhhCCCc--ceeCCcccccceee-ccccccC---------ccCCC--CCCccc-
Confidence 35766 87764 445566887655433 24565224888884 3333333 47999 999995
Q ss_pred hHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCccccc----------ChhHHHHHHHH
Q psy11068 167 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFK----------VPCRLREHYKA 236 (292)
Q Consensus 167 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~----------~~~~L~~H~~~ 236 (292)
...|..|+..++ .++.|+ ||+.+ .+..|..|+.+| -..+++.|..|++.|. ..+.|..|..
T Consensus 465 ~s~LekH~~~~H---kpv~Cp---Cg~~~-~R~~L~~H~~th-Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~- 535 (567)
T PLN03086 465 QGEMEKHMKVFH---EPLQCP---CGVVL-EKEQMVQHQAST-CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES- 535 (567)
T ss_pred hHHHHHHHHhcC---CCccCC---CCCCc-chhHHHhhhhcc-CCCCceeCCCCCCccccCccccchhhhhhhHHHHHH-
Confidence 678999999875 579995 99755 668999999888 6678999999999885 2357999987
Q ss_pred hcCCCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068 237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHL 270 (292)
Q Consensus 237 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~ 270 (292)
++ +.+++.|.. ||+.|..+ .|..|+...|.
T Consensus 536 ~C-G~rt~~C~~--Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 536 IC-GSRTAPCDS--CGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred hc-CCcceEccc--cCCeeeeh-hHHHHHHHhhc
Confidence 44 889999976 99888665 47888876664
No 14
>PHA00733 hypothetical protein
Probab=99.07 E-value=2.9e-10 Score=83.06 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=61.8
Q ss_pred CCcccccccccchhccChHHHHHH--Hh---hhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccc
Q psy11068 150 PLTLCCEELGCGRKFQTMKQYSTH--LK---EHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQF 224 (292)
Q Consensus 150 ~~~~~C~~~~C~~~f~~~~~l~~H--~~---~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f 224 (292)
.+.+.|.+ |.+.|.....|..+ +. .+.+ .+||.|.. |++.|.+...|..|++.+ . .+|.|..|+++|
T Consensus 38 ~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~-~kPy~C~~--Cgk~Fss~s~L~~H~r~h-~--~~~~C~~CgK~F 109 (128)
T PHA00733 38 QKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKA-VSPYVCPL--CLMPFSSSVSLKQHIRYT-E--HSKVCPVCGKEF 109 (128)
T ss_pred hhhHHHHH--HhhhccChhhhcchHHHHhhcccCC-CCCccCCC--CCCcCCCHHHHHHHHhcC-C--cCccCCCCCCcc
Confidence 45677777 77777766666555 21 1222 67899987 999999999999998876 2 468999999999
Q ss_pred cChhHHHHHHHHhc
Q psy11068 225 KVPCRLREHYKAVH 238 (292)
Q Consensus 225 ~~~~~L~~H~~~~H 238 (292)
.....|..|+...|
T Consensus 110 ~~~~sL~~H~~~~h 123 (128)
T PHA00733 110 RNTDSTLDHVCKKH 123 (128)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999988666
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.96 E-value=5e-10 Score=67.35 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=20.5
Q ss_pred ccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCccccccc
Q psy11068 244 FKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290 (292)
Q Consensus 244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~ 290 (292)
|+|+. ||+.|++.++|..|++ .|+ +||+|.. |+|.|...+
T Consensus 6 y~C~~--CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s 45 (55)
T PHA02768 6 YECPI--CGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTG 45 (55)
T ss_pred cCcch--hCCeeccHHHHHHHHH-hcC--CcccCCc--ccceecccc
Confidence 45544 5555555555555555 344 3555544 555555443
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.93 E-value=4.2e-10 Score=67.70 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=29.4
Q ss_pred cccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHH
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALK 262 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~ 262 (292)
|.|+.||+.|...++|..|++ +|. ++|+|.. |++.|.+.+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHH-hcC--CcccCCc--ccceecccceeE
Confidence 667777777777777777777 565 5677755 777776665543
No 17
>KOG3993|consensus
Probab=98.83 E-value=3.9e-10 Score=94.75 Aligned_cols=203 Identities=15% Similarity=0.168 Sum_probs=120.6
Q ss_pred CCCcccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccch
Q psy11068 53 KQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNK 132 (292)
Q Consensus 53 ~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~ 132 (292)
....|.|.+ |...|.+.-.|..|.=.-.---.|+|+. |+|.|.-..+|..|.|.|........-.-+-=.+
T Consensus 264 ~iGdyiCqL--CK~kYeD~F~LAQHrC~RIV~vEYrCPE-------C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~ 334 (500)
T KOG3993|consen 264 VIGDYICQL--CKEKYEDAFALAQHRCPRIVHVEYRCPE-------CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQ 334 (500)
T ss_pred cHHHHHHHH--HHHhhhhHHHHhhccCCeeEEeeecCCc-------ccccccCchhhhhhhcccCCchhhhhcCCCChhh
Confidence 344699997 9999999999998852221124599998 9999999999999999986543211100000000
Q ss_pred hcCChHHHHHHHHh---cCCCCcccccccccchhccChHHHHHHHhhhcCCCCc----------------eeCCCCCCCc
Q psy11068 133 RFTTLSNLKMHMVR---HGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAP----------------YMCDYKGCGK 193 (292)
Q Consensus 133 ~f~~~~~l~~H~~~---h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------------~~C~~~~C~~ 193 (292)
.-.. ..+.+-... -.....|.|.. |++.|..+..|+.|+.+|...... +-+.. |+-
T Consensus 335 ~~~~-rae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~--~a~ 409 (500)
T KOG3993|consen 335 AVET-RAEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA--VAT 409 (500)
T ss_pred hhhh-hhhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc--ccc
Confidence 1111 111111110 12234688988 999999999999998877642211 11111 222
Q ss_pred ccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068 194 SFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM 272 (292)
Q Consensus 194 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~ 272 (292)
.+.....--.+...+........|+.|+-.+.++..--.+.+ .-..+..|.|.+ |.-.|.....|.+|+..-|..+
T Consensus 410 h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~r-lg~~~q~f~~ky--~~atfyss~~ltrhin~~Hpse 485 (500)
T KOG3993|consen 410 HSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGR-LGIAEQGFTCKY--CPATFYSSPGLTRHINKCHPSE 485 (500)
T ss_pred ccccccccccceeeeeccccccCCCCCCCCcccCCCCCcccc-ccchhhcccccc--chHhhhcCcchHhHhhhcChHH
Confidence 222211111111112122233457888877777665555544 334566799988 9999999999999999878665
No 18
>KOG3993|consensus
Probab=98.70 E-value=1.2e-09 Score=91.93 Aligned_cols=172 Identities=16% Similarity=0.224 Sum_probs=89.3
Q ss_pred cccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcC-CCCCCccCCCcccchhc
Q psy11068 56 LWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD-EDKKCYPCDQKNCNKRF 134 (292)
Q Consensus 56 ~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~-~~~~~~~c~c~~C~~~f 134 (292)
.|+|+ +|+++|+-..+|..|.+=|... +-.=. .+.+- =.+...+....+.=.+.-. .....|.|. .|+++|
T Consensus 295 EYrCP--EC~KVFsCPANLASHRRWHKPR-~eaa~-a~~~P--~k~~~~~rae~~ea~rsg~dss~gi~~C~--~C~KkF 366 (500)
T KOG3993|consen 295 EYRCP--ECDKVFSCPANLASHRRWHKPR-PEAAK-AGSPP--PKQAVETRAEVQEAERSGDDSSSGIFSCH--TCGKKF 366 (500)
T ss_pred eecCC--cccccccCchhhhhhhcccCCc-hhhhh-cCCCC--hhhhhhhhhhhhhccccCCcccCceeecH--Hhhhhh
Confidence 59999 6999999999999999887431 10000 00000 0000011111111111000 111235555 677777
Q ss_pred CChHHHHHHHHhcCCCC-----------------cccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCC
Q psy11068 135 TTLSNLKMHMVRHGKPL-----------------TLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYL 197 (292)
Q Consensus 135 ~~~~~l~~H~~~h~~~~-----------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~ 197 (292)
.....|+.|+.+|.... .+-+.. |+..+.....--.+...+.+....-.|.+ |+..+.+
T Consensus 367 rRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~--~a~h~~a~~~~g~~vl~~a~sael~~pp~--~~~ppss 442 (500)
T KOG3993|consen 367 RRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA--VATHSSASDSHGDEVLYVAGSAELELPPY--DGSPPSS 442 (500)
T ss_pred HHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc--cccccccccccccceeeeeccccccCCCC--CCCCccc
Confidence 77777777766553321 122333 44444433333333333333233345666 7766666
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068 198 MASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHES 240 (292)
Q Consensus 198 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 240 (292)
+..--.+.+.- .-...|.|.+|.-+|-+...|.+|+..-|..
T Consensus 443 s~~sgg~~rlg-~~~q~f~~ky~~atfyss~~ltrhin~~Hps 484 (500)
T KOG3993|consen 443 SGSSGGYGRLG-IAEQGFTCKYCPATFYSSPGLTRHINKCHPS 484 (500)
T ss_pred CCCCCcccccc-chhhccccccchHhhhcCcchHhHhhhcChH
Confidence 55444444333 1234588889999999888999988766643
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.65 E-value=1e-08 Score=52.75 Aligned_cols=24 Identities=46% Similarity=1.018 Sum_probs=12.8
Q ss_pred HHhHhhhhcCCCCcCCCCCccCCcccc
Q psy11068 261 LKRHNKSKHLNMRMFPCPLVTCGKSFL 287 (292)
Q Consensus 261 l~~H~~~~H~~~~~~~C~~~~C~~~f~ 287 (292)
|.+|++ .|++++||.|+. |+++|.
T Consensus 2 l~~H~~-~H~~~k~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMR-THTGEKPYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHH-HHSSSSSEEESS--SSEEES
T ss_pred HHHHhh-hcCCCCCCCCCC--CcCeeC
Confidence 455555 455555555554 555554
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.59 E-value=3.4e-08 Score=50.77 Aligned_cols=25 Identities=44% Similarity=0.926 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068 229 RLREHYKAVHESTKNFKCTYDGCKLLFS 256 (292)
Q Consensus 229 ~L~~H~~~~H~~~~~~~C~~~~C~~~f~ 256 (292)
+|.+|++ +|++++||+|++ |+++|.
T Consensus 1 ~l~~H~~-~H~~~k~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMR-THTGEKPYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHHH-HHSSSSSEEESS--SSEEES
T ss_pred CHHHHhh-hcCCCCCCCCCC--CcCeeC
Confidence 3667776 677777777765 777765
No 21
>PHA00616 hypothetical protein
Probab=98.43 E-value=1e-07 Score=54.55 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=16.8
Q ss_pred cccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP 278 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~ 278 (292)
||+|+. ||+.|.+++.|..|++ .|++++|+.|+
T Consensus 1 pYqC~~--CG~~F~~~s~l~~H~r-~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLR--CGGIFRKKKEVIEHLL-SVHKQNKLTLE 33 (44)
T ss_pred CCccch--hhHHHhhHHHHHHHHH-HhcCCCcccee
Confidence 355544 5555555555555555 34455555544
No 22
>PHA00732 hypothetical protein
Probab=98.28 E-value=5.8e-07 Score=59.55 Aligned_cols=45 Identities=31% Similarity=0.635 Sum_probs=26.1
Q ss_pred ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHH
Q psy11068 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235 (292)
Q Consensus 183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~ 235 (292)
||.|.. |++.|.+...|+.|++.+|. ++.|+.|++.|. .|..|++
T Consensus 1 py~C~~--Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPI--CGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCC--CCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhc
Confidence 456655 66666666666666664222 245666666665 3555554
No 23
>PHA00616 hypothetical protein
Probab=98.27 E-value=4.3e-07 Score=52.02 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.5
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCCCcccCCc
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTY 248 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~ 248 (292)
||+|+.||+.|..++.|..|++ .|.+++++.|++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r-~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLL-SVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHH-HhcCCCccceeE
Confidence 6999999999999999999999 788999999865
No 24
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.23 E-value=2.1e-06 Score=52.78 Aligned_cols=51 Identities=35% Similarity=0.582 Sum_probs=30.9
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCC-CcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHEST-KNFKCTYDGCKLLFSTKSALKRHNKSKH 269 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~H 269 (292)
.|.|++|++. -+...|..|....|..+ +.+.|++ |...+. ..|..|+...|
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence 3667777773 34556777766666554 3567766 776543 36777776444
No 25
>PHA00732 hypothetical protein
Probab=98.07 E-value=3.3e-06 Score=55.93 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=38.6
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhh
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKS 267 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 267 (292)
||.|..|++.|.....|..|++..|. ++.|+. |++.|. .|..|+++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---Chhhhhcc
Confidence 58899999999999999999874465 468977 999998 48888874
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.96 E-value=2e-05 Score=48.40 Aligned_cols=51 Identities=27% Similarity=0.570 Sum_probs=37.6
Q ss_pred ceeCCCCCCCcccCCHHHHHHHHHHhcCC-CCCcccCCCcccccChhHHHHHHHHhc
Q psy11068 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVH 238 (292)
Q Consensus 183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H 238 (292)
.|.|++ |++ ..+...|..|....|.. .+.+.|++|...+. .+|..|+...|
T Consensus 2 ~f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 378888 999 55677888887765444 45688999987655 48888888555
No 27
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.91 E-value=2.6e-06 Score=69.55 Aligned_cols=53 Identities=28% Similarity=0.528 Sum_probs=36.1
Q ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHhcC------------------CCCCcccCCCcccccChhHHHHH
Q psy11068 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVT------------------NPEDLVCKGCGKQFKVPCRLREH 233 (292)
Q Consensus 181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------------------~~~~~~C~~C~~~f~~~~~L~~H 233 (292)
++||+|++++|.+.|.+...|+-|+.--|- ..+||+|++|+|.|.....|+-|
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYH 417 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceec
Confidence 589999999999999999999999864331 12455555555555555555544
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.79 E-value=1.5e-05 Score=39.57 Aligned_cols=16 Identities=56% Similarity=0.841 Sum_probs=7.7
Q ss_pred ccccccCHHHHHhHhh
Q psy11068 251 CKLLFSTKSALKRHNK 266 (292)
Q Consensus 251 C~~~f~~~~~l~~H~~ 266 (292)
|++.|.++..|..|++
T Consensus 6 C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 6 CGKSFSSKSNLKRHMR 21 (23)
T ss_dssp TTEEESSHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHh
Confidence 4444444444444444
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.66 E-value=2.6e-05 Score=38.66 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=21.2
Q ss_pred cccCCCcccccChhHHHHHHHHhc
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVH 238 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H 238 (292)
|.|+.|++.|.++..|..|++ .|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~-~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMR-RH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHH-HH
T ss_pred CCCCCCCCccCCHHHHHHHHh-HC
Confidence 689999999999999999998 45
No 30
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.58 E-value=4.1e-05 Score=62.71 Aligned_cols=25 Identities=36% Similarity=0.731 Sum_probs=16.3
Q ss_pred CcccccCCCCcccccChHHHHhHHh
Q psy11068 55 QLWSCPIVNCNFTSVNLNTFKIHLL 79 (292)
Q Consensus 55 ~~~~C~~~~C~~~~~~~~~l~~H~~ 79 (292)
++|+|++..|++.+++...|+-|+.
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~l 372 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHML 372 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhh
Confidence 5666666666666666666666653
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.52 E-value=7.8e-05 Score=37.18 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=6.8
Q ss_pred ccccccCHHHHHhHhh
Q psy11068 251 CKLLFSTKSALKRHNK 266 (292)
Q Consensus 251 C~~~f~~~~~l~~H~~ 266 (292)
|++.|.+...|..|++
T Consensus 6 C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 6 CGKSFRSKSELRQHMR 21 (24)
T ss_dssp TS-EESSHHHHHHHHH
T ss_pred CCCcCCcHHHHHHHHH
Confidence 4444444444444444
No 32
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.51 E-value=7.6e-05 Score=52.25 Aligned_cols=23 Identities=39% Similarity=0.972 Sum_probs=12.7
Q ss_pred cccCCcCCccccccCHHHHHhHhhh
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNKS 267 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~~ 267 (292)
.+.|.+ |++.|.+...|..||++
T Consensus 50 ~~~C~~--C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 50 SFRCPY--CNKTFRSREALQEHMRS 72 (100)
T ss_dssp SEEBSS--SS-EESSHHHHHHHHHH
T ss_pred CCCCCc--cCCCCcCHHHHHHHHcC
Confidence 455655 66666666666666554
No 33
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.50 E-value=8e-05 Score=37.15 Aligned_cols=24 Identities=38% Similarity=0.840 Sum_probs=19.6
Q ss_pred cccCCCcccccChhHHHHHHHHhc
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVH 238 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H 238 (292)
|.|++|++.|.+...|..|+++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999998544
No 34
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.29 E-value=0.00022 Score=49.91 Aligned_cols=71 Identities=25% Similarity=0.443 Sum_probs=14.5
Q ss_pred ccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHH
Q psy11068 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHY 234 (292)
Q Consensus 155 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~ 234 (292)
|.. |+..|.+...|..|+...++...+ ....+.....+..+++.... ..+.|..|++.|.+...|..|+
T Consensus 2 C~~--C~~~f~~~~~l~~H~~~~H~~~~~-------~~~~l~~~~~~~~~~~~~~~--~~~~C~~C~~~f~s~~~l~~Hm 70 (100)
T PF12756_consen 2 CLF--CDESFSSVDDLLQHMKKKHGFDIP-------DQKYLVDPNRLLNYLRKKVK--ESFRCPYCNKTFRSREALQEHM 70 (100)
T ss_dssp ----------------------------------------------------------SSEEBSSSS-EESSHHHHHHHH
T ss_pred ccc--cccccccccccccccccccccccc-------cccccccccccccccccccC--CCCCCCccCCCCcCHHHHHHHH
Confidence 555 666666666666666544431111 11111122233333332211 2466666666666666666666
Q ss_pred HH
Q psy11068 235 KA 236 (292)
Q Consensus 235 ~~ 236 (292)
+.
T Consensus 71 ~~ 72 (100)
T PF12756_consen 71 RS 72 (100)
T ss_dssp HH
T ss_pred cC
Confidence 63
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.25 E-value=0.00019 Score=37.06 Aligned_cols=22 Identities=41% Similarity=0.801 Sum_probs=13.9
Q ss_pred cccCCcCCccccccCHHHHHhHhh
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
||+|.. |++.|.+...|..|++
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKR 22 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHC
T ss_pred CCCCCc--cCCccCChhHHHHHhH
Confidence 456655 6666666666666665
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.11 E-value=0.00033 Score=36.14 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=11.2
Q ss_pred ccccccchHHHHHhHhhcC
Q psy11068 99 CMWGFFSKHKLLRHMTSHD 117 (292)
Q Consensus 99 C~~~f~~~~~l~~H~~~h~ 117 (292)
|++.|.+...|..|++.|.
T Consensus 7 C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 7 CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp TTEEESSHHHHHHHHCTTT
T ss_pred cCCccCChhHHHHHhHHhc
Confidence 6666666666666655543
No 37
>KOG4173|consensus
Probab=96.81 E-value=0.00055 Score=52.71 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=56.3
Q ss_pred ceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhc---------CCCCcccCCcCCccc
Q psy11068 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH---------ESTKNFKCTYDGCKL 253 (292)
Q Consensus 183 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H---------~~~~~~~C~~~~C~~ 253 (292)
.|.|.+-+|...|.....+..|..+-|+ -.|.+|.+.|.+...|..|+.--| .|...|+|-+++|+.
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 3566666666666666666666554433 237777777777777777765444 244568888788888
Q ss_pred cccCHHHHHhHhhhhcCC
Q psy11068 254 LFSTKSALKRHNKSKHLN 271 (292)
Q Consensus 254 ~f~~~~~l~~H~~~~H~~ 271 (292)
.|.+......|+...|.=
T Consensus 155 KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred hhhhhhhhhhHHHHhccC
Confidence 888888888887767743
No 38
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.72 E-value=0.0016 Score=32.75 Aligned_cols=16 Identities=50% Similarity=0.845 Sum_probs=6.7
Q ss_pred ccccccCHHHHHhHhh
Q psy11068 251 CKLLFSTKSALKRHNK 266 (292)
Q Consensus 251 C~~~f~~~~~l~~H~~ 266 (292)
|+++|.....|..|++
T Consensus 6 C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 6 CGKVFKSKSALKEHMR 21 (26)
T ss_pred CcchhCCHHHHHHHHH
Confidence 4444444444444443
No 39
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.63 E-value=0.0011 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=5.4
Q ss_pred cCCCcccccChhHHHHHH
Q psy11068 217 CKGCGKQFKVPCRLREHY 234 (292)
Q Consensus 217 C~~C~~~f~~~~~L~~H~ 234 (292)
|++|+..+....+|++|+
T Consensus 27 CP~C~a~~~~srnLrRHl 44 (54)
T PF09237_consen 27 CPICGAVIRQSRNLRRHL 44 (54)
T ss_dssp -TTT--EESSHHHHHHHH
T ss_pred CCcchhhccchhhHHHHH
Confidence 333333333333333333
No 40
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.46 E-value=0.00077 Score=60.31 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=36.0
Q ss_pred CceeCCCCCCCcccCCHHHHHHHHHHhcCC-CCCcccCCCcccccChhHHHHHHHHhcCCCCcccC
Q psy11068 182 APYMCDYKGCGKSFYLMASLKSHQRVHVTN-PEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKC 246 (292)
Q Consensus 182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C 246 (292)
..+.+....|-..+.....+..|...+... ...+.+..|.+.|.....|..|++ .|....++-|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 449 (467)
T COG5048 385 KKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAPLLC 449 (467)
T ss_pred ccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccc-ccccCCceee
Confidence 334444444555566665666665555221 123556667777777767777666 5666555555
No 41
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.36 E-value=0.0035 Score=31.45 Aligned_cols=24 Identities=42% Similarity=0.851 Sum_probs=21.9
Q ss_pred cccCCCcccccChhHHHHHHHHhcC
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVHE 239 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H~ 239 (292)
|.|..|++.|.....|..|++ .|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence 679999999999999999998 774
No 42
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.35 E-value=0.011 Score=49.50 Aligned_cols=144 Identities=19% Similarity=0.312 Sum_probs=87.3
Q ss_pred cccccCCCCcccccChHHHHhHHhhccCCCccccccCCCC--cccccccccchHHHHHhHhhcCCC---CCCccCCCccc
Q psy11068 56 LWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTAN--NTPCMWGFFSKHKLLRHMTSHDED---KKCYPCDQKNC 130 (292)
Q Consensus 56 ~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~--~~~C~~~f~~~~~l~~H~~~h~~~---~~~~~c~c~~C 130 (292)
.|.|+.-.|..+...+..|..|.+..++ .+.|.+|-.+ -..|.-...++..|..|...-..+ +.--.|. .|
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~--FC 226 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI--FC 226 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhh--hc
Confidence 4889988899999999999999987664 3567763111 001444556667788886544332 1111355 68
Q ss_pred chhcCChHHHHHHHHhcCCCCcccccccc--cchhccChHHHHHHHhhhcCCCCceeCCCCCCC----cccCCHHHHHHH
Q psy11068 131 NKRFTTLSNLKMHMVRHGKPLTLCCEELG--CGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCG----KSFYLMASLKSH 204 (292)
Q Consensus 131 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~----~~f~~~~~l~~H 204 (292)
...|.+-..|.+|++.-+ ++-|.|+..+ -..-|.+...|..|.+.-+ |.|.+..|- ..|.....|+.|
T Consensus 227 ~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~el~~h 300 (493)
T COG5236 227 KIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHTELLEH 300 (493)
T ss_pred cceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHHHHHHH
Confidence 888888888888887633 3344444311 1224666677777765433 555443342 356677777777
Q ss_pred HHHhc
Q psy11068 205 QRVHV 209 (292)
Q Consensus 205 ~~~h~ 209 (292)
+..-|
T Consensus 301 ~~~~h 305 (493)
T COG5236 301 LTRFH 305 (493)
T ss_pred HHHHh
Confidence 65543
No 43
>KOG2231|consensus
Probab=96.31 E-value=0.013 Score=54.16 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=23.7
Q ss_pred eCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCc------ccccChhHHHHHHHHhc
Q psy11068 185 MCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCG------KQFKVPCRLREHYKAVH 238 (292)
Q Consensus 185 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~------~~f~~~~~L~~H~~~~H 238 (292)
.|.+ |...|.....|.+|++.+| |.|.+|+ .-|..-..|..|.+.-|
T Consensus 184 ~C~~--C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 184 LCKF--CHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred cchh--hhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC
Confidence 4544 5555555555555555442 3344442 23444455555555434
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.15 E-value=0.005 Score=30.60 Aligned_cols=9 Identities=78% Similarity=0.859 Sum_probs=3.4
Q ss_pred HHHHHhHhh
Q psy11068 258 KSALKRHNK 266 (292)
Q Consensus 258 ~~~l~~H~~ 266 (292)
+..|..|++
T Consensus 12 ~~~l~~H~~ 20 (24)
T PF13909_consen 12 KSNLKRHLK 20 (24)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 45
>KOG2231|consensus
Probab=96.10 E-value=0.018 Score=53.27 Aligned_cols=129 Identities=22% Similarity=0.467 Sum_probs=82.6
Q ss_pred ccccccchHHHHHhHhhcCCCCCCccCCCccc---------chhcCChHHHHHHHHhcCC-CC----cccccccccchhc
Q psy11068 99 CMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNC---------NKRFTTLSNLKMHMVRHGK-PL----TLCCEELGCGRKF 164 (292)
Q Consensus 99 C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C---------~~~f~~~~~l~~H~~~h~~-~~----~~~C~~~~C~~~f 164 (292)
| -.|.+...|+.|+...|.. +.|. +| .....+...|..|+..--. +. .-.|.. |...|
T Consensus 121 c-~~~~s~~~Lk~H~~~~H~~---~~c~--lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~--C~~~f 192 (669)
T KOG2231|consen 121 C-TEFKSVENLKNHMRDQHKL---HLCS--LCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKF--CHERF 192 (669)
T ss_pred c-cchhHHHHHHHHHHHhhhh---hccc--cccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchh--hhhhh
Confidence 5 4555889999999766654 3444 23 3344566788888875221 11 246888 99999
Q ss_pred cChHHHHHHHhhhcCCCCceeCCC----CCCCcccCCHHHHHHHHHHhcCCCCCcccC--CCc-ccc----cChhHHHHH
Q psy11068 165 QTMKQYSTHLKEHSNVSAPYMCDY----KGCGKSFYLMASLKSHQRVHVTNPEDLVCK--GCG-KQF----KVPCRLREH 233 (292)
Q Consensus 165 ~~~~~l~~H~~~h~~~~~~~~C~~----~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~-~~f----~~~~~L~~H 233 (292)
.....|..|++.++ |.|.+ .+++.-|.....|..|-+.+| |.|. .|. +.| .....|.+|
T Consensus 193 ld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H-----flCE~~~C~~~~f~~~~~~ei~lk~~ 262 (669)
T KOG2231|consen 193 LDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-----FLCEEEFCRTKKFYVAFELEIELKAH 262 (669)
T ss_pred ccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC-----ccccccccccceeeehhHHHHHHHhh
Confidence 99999999999877 44544 123466778889999988775 5565 453 233 344445545
Q ss_pred HHHhcCCCCcccC
Q psy11068 234 YKAVHESTKNFKC 246 (292)
Q Consensus 234 ~~~~H~~~~~~~C 246 (292)
.+ .+.-++.|.|
T Consensus 263 ~~-~~~~e~~~~~ 274 (669)
T KOG2231|consen 263 NR-FIQHEKCYIC 274 (669)
T ss_pred cc-ccchheeccC
Confidence 43 3444555666
No 46
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.10 E-value=0.0045 Score=36.43 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=22.0
Q ss_pred HHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHhcC
Q psy11068 171 STHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVT 210 (292)
Q Consensus 171 ~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 210 (292)
..+.+.+...+.|-.|+. |+..+.+..+|++|+.+.|.
T Consensus 12 ~~~~k~~~~S~~PatCP~--C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPI--CGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp ----CCCCTTS--EE-TT--T--EESSHHHHHHHHHHHTT
T ss_pred hhHHHHhhccCCCCCCCc--chhhccchhhHHHHHHHHhc
Confidence 445555555677888876 88888888888888877654
No 47
>PRK04860 hypothetical protein; Provisional
Probab=96.02 E-value=0.0031 Score=47.95 Aligned_cols=36 Identities=22% Similarity=0.539 Sum_probs=18.8
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcccccc
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFS 256 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~ 256 (292)
+|.|. |+. ....+++|.+ +|+++++|.|.. |+..|.
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~ 154 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLV 154 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeE
Confidence 45555 554 4445555555 555555555544 555543
No 48
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.96 E-value=0.005 Score=30.90 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=13.5
Q ss_pred ccCCcCCccccccCHHHHHhHhh
Q psy11068 244 FKCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 244 ~~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
|.|.+ |++.|.+...|..|++
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHT
T ss_pred CCCCC--CCCCcCCHHHHHHHHC
Confidence 45655 6666666666666665
No 49
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.79 E-value=0.0019 Score=57.71 Aligned_cols=148 Identities=22% Similarity=0.364 Sum_probs=91.4
Q ss_pred ccchhcCChHHHHHHHH--hcCCC--CcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHH--
Q psy11068 129 NCNKRFTTLSNLKMHMV--RHGKP--LTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLK-- 202 (292)
Q Consensus 129 ~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~-- 202 (292)
.|...|.....|.+|.+ .|.++ +++.|....|++.|.....+..|...|.+ ..++.+....+...+.....-.
T Consensus 294 ~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 372 (467)
T COG5048 294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS-ISPAKEKLLNSSSKFSPLLNNEPP 372 (467)
T ss_pred cccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccC-CCccccccccCccccccccCCCCc
Confidence 67777777777777777 67777 77777722277777777777777777776 4555555444555544433311
Q ss_pred --HHHHHhcCCCCCccc--CCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCC
Q psy11068 203 --SHQRVHVTNPEDLVC--KGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP 278 (292)
Q Consensus 203 --~H~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~ 278 (292)
............+.+ ..|...+.....+..|.. .|...+++.|....|.+.|.....|..|++ .|....++.|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 450 (467)
T COG5048 373 QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHII-THLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAPLLCS 450 (467)
T ss_pred cchhhccCccCCccccccccchhhhhccccccccccc-cccccCCcCCCCCcchhhccCccccccccc-ccccCCceeec
Confidence 111111111223333 246666777777777765 676666444433448888888888888888 67777777665
Q ss_pred C
Q psy11068 279 L 279 (292)
Q Consensus 279 ~ 279 (292)
.
T Consensus 451 ~ 451 (467)
T COG5048 451 I 451 (467)
T ss_pred c
Confidence 3
No 50
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.76 E-value=0.0082 Score=29.79 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=18.4
Q ss_pred cccCCCcccccChhHHHHHHHHhc
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVH 238 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H 238 (292)
|+|+.|+.... +..|.+|++..|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 68999999998 999999999555
No 51
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.69 E-value=0.0067 Score=30.42 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=9.0
Q ss_pred ccccccchHHHHHhHhh
Q psy11068 99 CMWGFFSKHKLLRHMTS 115 (292)
Q Consensus 99 C~~~f~~~~~l~~H~~~ 115 (292)
|++.|.+...|..|++.
T Consensus 6 C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 6 CNKSFSSENSLRQHLRS 22 (25)
T ss_dssp TTEEESSHHHHHHHHTT
T ss_pred CCCCcCCHHHHHHHHCc
Confidence 55555555555555543
No 52
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.61 E-value=0.0073 Score=31.00 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=16.5
Q ss_pred ccCCcCCccccccCHHHHHhHhhh
Q psy11068 244 FKCTYDGCKLLFSTKSALKRHNKS 267 (292)
Q Consensus 244 ~~C~~~~C~~~f~~~~~l~~H~~~ 267 (292)
|.|.+ |++.|.+...|..|+++
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 66766 88888888888877763
No 53
>KOG4173|consensus
Probab=95.56 E-value=0.012 Score=45.62 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCCcccccccccchhccChHHHHHHHhhhc
Q psy11068 149 KPLTLCCEELGCGRKFQTMKQYSTHLKEHS 178 (292)
Q Consensus 149 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 178 (292)
|...|.|..++|+..|.+...-..|+..-+
T Consensus 141 G~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 141 GQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred CccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 456688888888888888877777775443
No 54
>KOG2482|consensus
Probab=95.50 E-value=0.036 Score=46.47 Aligned_cols=50 Identities=36% Similarity=0.561 Sum_probs=40.1
Q ss_pred cccCCCcccccChhHHHHHHHHhcCC--------------------------CCcccCCcCCccccccCHHHHHhHhh
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVHES--------------------------TKNFKCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H~~--------------------------~~~~~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
.+|-.|.....+...|..||..+|.- ...-.|.. |...|-....|..||.
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~--cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE--CDLSFWKEPGLLIHMV 355 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc--ccccccCcchhhhhcc
Confidence 58999999999999999999999941 01124644 8889999999999986
No 55
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.26 E-value=0.031 Score=46.91 Aligned_cols=132 Identities=24% Similarity=0.517 Sum_probs=89.0
Q ss_pred ccCCCcccchhcCChHHHHHHHHhcCCCCcccccccccch---------hccChHHHHHHHhhhcCC---CCceeCCCCC
Q psy11068 123 YPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGR---------KFQTMKQYSTHLKEHSNV---SAPYMCDYKG 190 (292)
Q Consensus 123 ~~c~c~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~---------~f~~~~~l~~H~~~h~~~---~~~~~C~~~~ 190 (292)
|.|+-..|.........|+.|.+.-++ .+.|.+ |-. ...++..|..|...-..+ ...=.|.+
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~--C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F-- 225 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSE--CIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF-- 225 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHh--hhcCcccCccceeeeecccccccccCCccccCcCCCchhhh--
Confidence 677766777777778889999886433 233444 422 233556677776543221 12237988
Q ss_pred CCcccCCHHHHHHHHHHhcCCCCCcccCCCcc-------cccChhHHHHHHHHhcCCCCcccCCcCCcc----ccccCHH
Q psy11068 191 CGKSFYLMASLKSHQRVHVTNPEDLVCKGCGK-------QFKVPCRLREHYKAVHESTKNFKCTYDGCK----LLFSTKS 259 (292)
Q Consensus 191 C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~-------~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~----~~f~~~~ 259 (292)
|...|..-..|.+|++..|. + |-+|++ -|..-..|..|.+..| |.|.+.-|- ..|....
T Consensus 226 C~~~FYdDDEL~~HcR~~HE--~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~ 295 (493)
T COG5236 226 CKIYFYDDDELRRHCRLRHE--A---CHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHT 295 (493)
T ss_pred ccceecChHHHHHHHHhhhh--h---hhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHH
Confidence 99999999999999998653 3 555554 4778889999987555 555432232 3589999
Q ss_pred HHHhHhhhhcC
Q psy11068 260 ALKRHNKSKHL 270 (292)
Q Consensus 260 ~l~~H~~~~H~ 270 (292)
.|..|+...|.
T Consensus 296 el~~h~~~~h~ 306 (493)
T COG5236 296 ELLEHLTRFHK 306 (493)
T ss_pred HHHHHHHHHhh
Confidence 99999987774
No 56
>PRK04860 hypothetical protein; Provisional
Probab=95.11 E-value=0.012 Score=44.86 Aligned_cols=40 Identities=20% Similarity=0.615 Sum_probs=34.3
Q ss_pred CcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCccccccc
Q psy11068 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFLSTQ 290 (292)
Q Consensus 242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~~~~ 290 (292)
-+|.|. |+. ....+++|.+ .|.++++|.|.. |+..|.-..
T Consensus 118 ~~Y~C~---C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK---CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLVFKG 157 (160)
T ss_pred EEEEcC---CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeEEec
Confidence 479994 987 7788999999 799999999998 999987543
No 57
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.00 E-value=0.013 Score=30.11 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=11.2
Q ss_pred ccccccchHHHHHhHhh
Q psy11068 99 CMWGFFSKHKLLRHMTS 115 (292)
Q Consensus 99 C~~~f~~~~~l~~H~~~ 115 (292)
|++.|.+...|..|+++
T Consensus 7 C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 7 CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp TTBBBSSHHHHHCCTTS
T ss_pred CCCCcCCHHHHHHHHcc
Confidence 66666666666666654
No 58
>KOG1146|consensus
Probab=94.97 E-value=0.01 Score=58.22 Aligned_cols=139 Identities=15% Similarity=0.247 Sum_probs=70.9
Q ss_pred cchhcCChHHHHHHHH-hcCCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcccCCHHHHHHHHHHh
Q psy11068 130 CNKRFTTLSNLKMHMV-RHGKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208 (292)
Q Consensus 130 C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h 208 (292)
|+..+.++..+.-|+. .|...+.|.|+. |+..|+....|-.|++.-+.....-.|. .. ...-.+.+ ..+-
T Consensus 442 ~e~~~~s~r~~~~~t~~L~S~~kt~~cpk--c~~~yk~a~~L~vhmRskhp~~~~~~c~-----~g-q~~~~~ar-g~~~ 512 (1406)
T KOG1146|consen 442 AEPLLESKRSLEGQTVVLHSFFKTLKCPK--CNWHYKLAQTLGVHMRSKHPESQSAYCK-----AG-QNHPRLAR-GEVY 512 (1406)
T ss_pred hhhhhhhhcccccceeeeecccccccCCc--cchhhhhHHHhhhcccccccccchhHhH-----hc-cccccccc-cccc
Confidence 4444444444444433 244456666766 7777777777777766522101111110 00 00000000 0001
Q ss_pred cCCCCCcccCCCcccccChhHHHHHHHH-hcC-----------------------------------C------CCcccC
Q psy11068 209 VTNPEDLVCKGCGKQFKVPCRLREHYKA-VHE-----------------------------------S------TKNFKC 246 (292)
Q Consensus 209 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~-~H~-----------------------------------~------~~~~~C 246 (292)
..+.++|.|..|..++..+..|..|++. .|. + .-+|.|
T Consensus 513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C 592 (1406)
T KOG1146|consen 513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRC 592 (1406)
T ss_pred cCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcch
Confidence 1233567777777777777777777652 121 0 113778
Q ss_pred CcCCccccccCHHHHHhHhhhhcCCCCcCCCCC
Q psy11068 247 TYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL 279 (292)
Q Consensus 247 ~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~ 279 (292)
.+ |++.-+-..+|+.||.+.+....|..+..
T Consensus 593 ~v--c~yetniarnlrihmtss~~s~~p~~~Lq 623 (1406)
T KOG1146|consen 593 EV--CSYETNIARNLRIHMTASPSSSPPSLVLQ 623 (1406)
T ss_pred hh--hcchhhhhhccccccccCCCCCChHHHhh
Confidence 77 88887777788888876555544444443
No 59
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.62 E-value=0.067 Score=26.84 Aligned_cols=18 Identities=44% Similarity=0.920 Sum_probs=8.9
Q ss_pred ccCCCcccccChhHHHHHH
Q psy11068 216 VCKGCGKQFKVPCRLREHY 234 (292)
Q Consensus 216 ~C~~C~~~f~~~~~L~~H~ 234 (292)
.|+.|++.| ....|.+|+
T Consensus 4 ~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred cCCCCCCEE-CHHHHHHHH
Confidence 355555555 344455554
No 60
>KOG1146|consensus
Probab=93.29 E-value=0.029 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCCcccCCcCCccccccCHHHHHhHhhh
Q psy11068 240 STKNFKCTYDGCKLLFSTKSALKRHNKS 267 (292)
Q Consensus 240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 267 (292)
+.++|.|.. |..+++.+.+|..|+.+
T Consensus 515 ~~~p~~C~~--C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 515 PGKPYPCRA--CNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred CCCccccee--eeeeeecchHHHHHHHH
Confidence 346899977 99999999999999875
No 61
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.54 E-value=0.081 Score=28.80 Aligned_cols=22 Identities=27% Similarity=0.535 Sum_probs=12.6
Q ss_pred CcccCCCcccccChhHHHHHHH
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYK 235 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~ 235 (292)
+|.|.+|++.|.....+..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 3556666666665555555543
No 62
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=92.32 E-value=0.13 Score=25.76 Aligned_cols=20 Identities=30% Similarity=0.688 Sum_probs=17.2
Q ss_pred ccCCcCCccccccCHHHHHhHhh
Q psy11068 244 FKCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 244 ~~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
..|++ ||+.| ....|..|+.
T Consensus 3 ~~C~~--CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPI--CGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCC--CCCEE-CHHHHHHHHH
Confidence 57988 99999 7888999986
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.74 E-value=0.14 Score=27.88 Aligned_cols=23 Identities=26% Similarity=0.691 Sum_probs=20.8
Q ss_pred cccCCcCCccccccCHHHHHhHhhh
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNKS 267 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~~ 267 (292)
+|.|.+ |++.|.....+..|++.
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHCh
Confidence 588988 99999999999999874
No 64
>KOG2785|consensus
Probab=91.18 E-value=0.75 Score=39.55 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=33.9
Q ss_pred CcccCCCcccccChhHHHHHHHHhcC----------------------CCCcccCCcCCcc---ccccCHHHHHhHhhh
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHE----------------------STKNFKCTYDGCK---LLFSTKSALKRHNKS 267 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~----------------------~~~~~~C~~~~C~---~~f~~~~~l~~H~~~ 267 (292)
|-.|-.|++.+.+...-..||...|. -..-|.|-+ |. +.|.+-.+.+.||..
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF--CNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE--eccccCcccccHHHHHHHhh
Confidence 35567777777776666677664443 113466777 77 778777788888763
No 65
>KOG2482|consensus
Probab=90.52 E-value=0.32 Score=40.99 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=56.2
Q ss_pred hHHHHHHHhhhcCCCCceeCCCCCCCcccC-CHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhcCCCCccc
Q psy11068 167 MKQYSTHLKEHSNVSAPYMCDYKGCGKSFY-LMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVHESTKNFK 245 (292)
Q Consensus 167 ~~~l~~H~~~h~~~~~~~~C~~~~C~~~f~-~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~ 245 (292)
+..|.++++.-.+.....+|-+ |...+. .++....|+-..|+-.-- =.--...-..|..|++ .....+.
T Consensus 128 ~eaLeqqQ~Eredt~fslqClF--Cn~e~lgnRs~~l~Hlf~~H~lniG-----lpDniVyvnelLehLk---ekL~r~~ 197 (423)
T KOG2482|consen 128 KEALEQQQKEREDTIFSLQCLF--CNNEGLGNRSEILEHLFHVHGLNIG-----LPDNIVYVNELLEHLK---EKLERLR 197 (423)
T ss_pred HHHHHHHHHHhcCCeeeeEEEE--ecchhcccHHHHHHHHHHHhhhccC-----CCcceeeHHHHHHHHH---HHHhhhe
Confidence 3455566555444455678888 887764 556677776543331100 0012233456777765 3345689
Q ss_pred CCcCCccccccCHHHHHhHhhh
Q psy11068 246 CTYDGCKLLFSTKSALKRHNKS 267 (292)
Q Consensus 246 C~~~~C~~~f~~~~~l~~H~~~ 267 (292)
|-+ |.+.|..+..|+.|||.
T Consensus 198 CLy--CekifrdkntLkeHMrk 217 (423)
T KOG2482|consen 198 CLY--CEKIFRDKNTLKEHMRK 217 (423)
T ss_pred eee--eccccCCcHHHHHHHHh
Confidence 999 99999999999999984
No 66
>KOG4124|consensus
Probab=89.21 E-value=0.12 Score=43.61 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=40.1
Q ss_pred CCCcccccccccchhccChHHHHHHHhh----hcCCCCceeCCCCCCCcccCCHHHHHHHH
Q psy11068 149 KPLTLCCEELGCGRKFQTMKQYSTHLKE----HSNVSAPYMCDYKGCGKSFYLMASLKSHQ 205 (292)
Q Consensus 149 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~----h~~~~~~~~C~~~~C~~~f~~~~~l~~H~ 205 (292)
.+.++.|..++|.++.........|-.. .....+||+|. |++.+.++..|+.|-
T Consensus 175 EE~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~t~~~p~k~~---~~~~~~T~~~l~~HS 232 (442)
T KOG4124|consen 175 EEYRVSVVVPAAAAAAAAANSSDMSSDEASSTAETTGTPKKMP---ESLVMDTSSPLSDHS 232 (442)
T ss_pred ccccccccCchhhhhhhccccccccccccccccccccCCccCc---ccccccccchhhhcc
Confidence 4688999998998888766555444322 11226899997 999999999998885
No 67
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=89.04 E-value=0.22 Score=29.91 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCCCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068 210 TNPEDLVCKGCGKQFKVPCRLREHYKAVHE 239 (292)
Q Consensus 210 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 239 (292)
.|+.-+.|+.|+..|....+..+|....|.
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 355667888888888888888888765663
No 68
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=88.75 E-value=0.9 Score=32.21 Aligned_cols=24 Identities=21% Similarity=0.750 Sum_probs=20.7
Q ss_pred ccC----CcCCccccccCHHHHHhHhhhhc
Q psy11068 244 FKC----TYDGCKLLFSTKSALKRHNKSKH 269 (292)
Q Consensus 244 ~~C----~~~~C~~~f~~~~~l~~H~~~~H 269 (292)
|.| .. |++.+.+...+.+|++..|
T Consensus 81 ~~C~~~~~~--C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPH--CGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCC--CCcEeccHHHHHHHHHHhc
Confidence 789 66 9999999999999998655
No 69
>KOG2893|consensus
Probab=85.99 E-value=0.24 Score=39.49 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=33.8
Q ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHHHhc
Q psy11068 181 SAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYKAVH 238 (292)
Q Consensus 181 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H 238 (292)
.++| |-+ |++.|.....|.+|++.. -|+|.+|-+..-+--.|..|--.+|
T Consensus 9 ~kpw-cwy--cnrefddekiliqhqkak-----hfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 9 DKPW-CWY--CNREFDDEKILIQHQKAK-----HFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred CCce-eee--cccccchhhhhhhhhhhc-----cceeeeehhhhccCCCceeehhhhh
Confidence 3444 666 888888888888887765 3778888776555555666644355
No 70
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=85.20 E-value=0.58 Score=25.17 Aligned_cols=7 Identities=57% Similarity=1.350 Sum_probs=2.8
Q ss_pred cccCCCc
Q psy11068 215 LVCKGCG 221 (292)
Q Consensus 215 ~~C~~C~ 221 (292)
+.|++|+
T Consensus 18 ~~CP~Cg 24 (33)
T cd00350 18 WVCPVCG 24 (33)
T ss_pred CcCcCCC
Confidence 3344443
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.16 E-value=4.4 Score=30.49 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=41.6
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCC
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFP 276 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~ 276 (292)
...|+.|.-...-. .+..--| .+.+.|+-.|..+.|... .+-..|++|.+..|...+|-.
T Consensus 80 ~L~CPLCRG~V~GW-tvve~AR-~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP~~rP~~ 139 (162)
T PF07800_consen 80 ELACPLCRGEVKGW-TVVEPAR-RFLNAKKRSCSQESCSFS-GTYSELRKHARSEHPSARPSE 139 (162)
T ss_pred cccCccccCceece-EEchHHH-HHhccCCccCcccccccc-cCHHHHHHHHHhhCCCCCCcc
Confidence 47799995332222 1222234 567788888988889854 677789999999998887754
No 72
>KOG4377|consensus
Probab=80.83 E-value=0.74 Score=39.90 Aligned_cols=65 Identities=25% Similarity=0.592 Sum_probs=39.5
Q ss_pred cccccccchHHHHHhHhhcCCCC-----------CCccCCCcccchhcCChHHHHHHHHhcCCC-------Ccccccccc
Q psy11068 98 PCMWGFFSKHKLLRHMTSHDEDK-----------KCYPCDQKNCNKRFTTLSNLKMHMVRHGKP-------LTLCCEELG 159 (292)
Q Consensus 98 ~C~~~f~~~~~l~~H~~~h~~~~-----------~~~~c~c~~C~~~f~~~~~l~~H~~~h~~~-------~~~~C~~~~ 159 (292)
.|+..+..+..+.+|...|.... ..|.|-...|.+ +-++...|-.-|+.. -.|.|...+
T Consensus 278 ~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~GfrrthfhC~r~g 354 (480)
T KOG4377|consen 278 YCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHFHCQRIG 354 (480)
T ss_pred cccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecceeEEeccC
Confidence 38877777888888887774332 235676667877 344555555555322 236677744
Q ss_pred cchhcc
Q psy11068 160 CGRKFQ 165 (292)
Q Consensus 160 C~~~f~ 165 (292)
|-.+|.
T Consensus 355 CTdtfK 360 (480)
T KOG4377|consen 355 CTDTFK 360 (480)
T ss_pred Cccccc
Confidence 445555
No 73
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=80.50 E-value=1.5 Score=25.28 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=8.6
Q ss_pred CcccCCCcccccCh----hHHHHHHH
Q psy11068 214 DLVCKGCGKQFKVP----CRLREHYK 235 (292)
Q Consensus 214 ~~~C~~C~~~f~~~----~~L~~H~~ 235 (292)
...|..|++.+... +.|..|++
T Consensus 16 ~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 16 KAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp -EEETTTTEE-----SSTHHHHHHHH
T ss_pred eEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 34455555544432 44555553
No 74
>KOG2785|consensus
Probab=78.96 E-value=3.9 Score=35.36 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=42.8
Q ss_pred ccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccc---hh
Q psy11068 57 WSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCN---KR 133 (292)
Q Consensus 57 ~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~---~~ 133 (292)
-.|-+ |++.+.+...-..||..+++-. .=. -........|..-+....+. .+.|- .|+ +.
T Consensus 167 t~CLf--C~~~~k~~e~~~~HM~~~Hgff--IPd---------reYL~D~~GLl~YLgeKV~~--~~~CL--~CN~~~~~ 229 (390)
T KOG2785|consen 167 TDCLF--CDKKSKSLEENLKHMFKEHGFF--IPD---------REYLTDEKGLLKYLGEKVGI--GFICL--FCNELGRP 229 (390)
T ss_pred cceee--cCCCcccHHHHHHHHhhccCCc--CCc---------hHhhhchhHHHHHHHHHhcc--CceEE--EeccccCc
Confidence 45876 9999999999999999888621 100 01122333344443333332 14555 466 66
Q ss_pred cCChHHHHHHHHh
Q psy11068 134 FTTLSNLKMHMVR 146 (292)
Q Consensus 134 f~~~~~l~~H~~~ 146 (292)
|.+..+.+.||..
T Consensus 230 f~sleavr~HM~~ 242 (390)
T KOG2785|consen 230 FSSLEAVRAHMRD 242 (390)
T ss_pred ccccHHHHHHHhh
Confidence 7777777777653
No 75
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=77.70 E-value=2.2 Score=25.37 Aligned_cols=24 Identities=38% Similarity=0.736 Sum_probs=12.9
Q ss_pred cccCCCcccccCh-----hHHHHHHHHhc
Q psy11068 215 LVCKGCGKQFKVP-----CRLREHYKAVH 238 (292)
Q Consensus 215 ~~C~~C~~~f~~~-----~~L~~H~~~~H 238 (292)
-.|..|++.++.. +.|.+|++..|
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 3466666655443 45666655434
No 76
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=77.11 E-value=1.9 Score=23.89 Aligned_cols=8 Identities=38% Similarity=1.207 Sum_probs=3.2
Q ss_pred cCCCcccc
Q psy11068 217 CKGCGKQF 224 (292)
Q Consensus 217 C~~C~~~f 224 (292)
|+.|+..|
T Consensus 5 CP~C~~~~ 12 (38)
T TIGR02098 5 CPNCKTSF 12 (38)
T ss_pred CCCCCCEE
Confidence 44444433
No 77
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=76.22 E-value=6.5 Score=27.78 Aligned_cols=24 Identities=25% Similarity=0.593 Sum_probs=22.1
Q ss_pred ccc----CCCcccccChhHHHHHHHHhc
Q psy11068 215 LVC----KGCGKQFKVPCRLREHYKAVH 238 (292)
Q Consensus 215 ~~C----~~C~~~f~~~~~L~~H~~~~H 238 (292)
|.| ..|+..+.+...|++|++..|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 889 999999999999999999666
No 78
>KOG2893|consensus
Probab=75.97 E-value=0.67 Score=37.06 Aligned_cols=49 Identities=31% Similarity=0.508 Sum_probs=35.5
Q ss_pred CCcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068 213 EDLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269 (292)
Q Consensus 213 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H 269 (292)
+++ |=.|++.|....-|..|+++.| |+|-+ |.|...+---|..|---+|
T Consensus 10 kpw-cwycnrefddekiliqhqkakh-----fkchi--chkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 10 KPW-CWYCNREFDDEKILIQHQKAKH-----FKCHI--CHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred Cce-eeecccccchhhhhhhhhhhcc-----ceeee--ehhhhccCCCceeehhhhh
Confidence 444 8889999999989988877555 89988 9887666665665532244
No 79
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=74.29 E-value=1.8 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.605 Sum_probs=25.0
Q ss_pred CCCCcccCCcCCccccccCHHHHHhHhhhhc
Q psy11068 239 ESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269 (292)
Q Consensus 239 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H 269 (292)
.|+--+.|+- |+..|.......+|....|
T Consensus 13 DGE~~lrCPR--C~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 13 DGEEFLRCPR--CGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CCceeeeCCc--hhHHHHHhHHHHHHhhHHh
Confidence 4677799976 9999999999999998656
No 80
>PF12907 zf-met2: Zinc-binding
Probab=73.45 E-value=1.9 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=6.0
Q ss_pred hHHHHHHHHhcCC
Q psy11068 228 CRLREHYKAVHES 240 (292)
Q Consensus 228 ~~L~~H~~~~H~~ 240 (292)
..|..|....|..
T Consensus 18 ~~L~eH~enKHpK 30 (40)
T PF12907_consen 18 PQLKEHAENKHPK 30 (40)
T ss_pred HHHHHHHHccCCC
Confidence 3455554444444
No 81
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.31 E-value=6.7 Score=27.81 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=12.1
Q ss_pred cccCCcCCccccccCHHHHHhHhh
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
.|+|+. |...|--.-..-.|..
T Consensus 81 ~y~C~~--C~~~FC~dCD~fiHe~ 102 (112)
T TIGR00622 81 RYVCAV--CKNVFCVDCDVFVHES 102 (112)
T ss_pred ceeCCC--CCCccccccchhhhhh
Confidence 466644 6666655555555544
No 82
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.23 E-value=0.74 Score=37.07 Aligned_cols=44 Identities=18% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCcccCCCcccccChhHHHHHHHHhc---------CCCCc-----ccCCcCCccccccCH
Q psy11068 213 EDLVCKGCGKQFKVPCRLREHYKAVH---------ESTKN-----FKCTYDGCKLLFSTK 258 (292)
Q Consensus 213 ~~~~C~~C~~~f~~~~~L~~H~~~~H---------~~~~~-----~~C~~~~C~~~f~~~ 258 (292)
+.+.|++|+..|.++.-+....+... .+..| ..|+. ||.+|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~--CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPH--CGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCC--CCCccccc
Confidence 45667777777776644443333111 12333 46977 99887644
No 83
>PF12907 zf-met2: Zinc-binding
Probab=69.07 E-value=2.8 Score=23.67 Aligned_cols=32 Identities=28% Similarity=0.635 Sum_probs=24.9
Q ss_pred ccCCcCCccccc---cCHHHHHhHhhhhcCCCCcCCC
Q psy11068 244 FKCTYDGCKLLF---STKSALKRHNKSKHLNMRMFPC 277 (292)
Q Consensus 244 ~~C~~~~C~~~f---~~~~~l~~H~~~~H~~~~~~~C 277 (292)
+.|.+ |.-+| .+...|..|..++|....+-.|
T Consensus 2 i~C~i--C~qtF~~t~~~~~L~eH~enKHpK~~~~~C 36 (40)
T PF12907_consen 2 IICKI--CRQTFMQTTNEPQLKEHAENKHPKNTFEEC 36 (40)
T ss_pred cCcHH--hhHHHHhcCCHHHHHHHHHccCCCCCHHHc
Confidence 67888 99555 5667899999999988766555
No 84
>KOG4377|consensus
Probab=67.53 E-value=2.2 Score=37.15 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=22.3
Q ss_pred ccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068 244 FKCTYDGCKLLFSTKSALKRHNKSKHL 270 (292)
Q Consensus 244 ~~C~~~~C~~~f~~~~~l~~H~~~~H~ 270 (292)
|-|...+|+.+|...+.+..|.+ .|.
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkr-khe 427 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKR-KHE 427 (480)
T ss_pred eeecccCCceEEEehhhhhhhhh-hhh
Confidence 55766889999999999999998 784
No 85
>KOG4167|consensus
Probab=67.05 E-value=2.5 Score=39.60 Aligned_cols=25 Identities=32% Similarity=0.757 Sum_probs=18.6
Q ss_pred CccCCCcccchhcCChHHHHHHHHhcC
Q psy11068 122 CYPCDQKNCNKRFTTLSNLKMHMVRHG 148 (292)
Q Consensus 122 ~~~c~c~~C~~~f~~~~~l~~H~~~h~ 148 (292)
.|.|. .|++.|.....++.||++|.
T Consensus 792 iFpCr--eC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 792 IFPCR--ECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eeehH--HHHHHHHHHhhhhHHHHHHH
Confidence 36666 78888887777888887774
No 86
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=66.74 E-value=5.2 Score=21.94 Aligned_cols=8 Identities=38% Similarity=1.207 Sum_probs=3.3
Q ss_pred cccCCCcc
Q psy11068 215 LVCKGCGK 222 (292)
Q Consensus 215 ~~C~~C~~ 222 (292)
.+|+.|+.
T Consensus 26 v~C~~C~~ 33 (36)
T PF13717_consen 26 VRCSKCGH 33 (36)
T ss_pred EECCCCCC
Confidence 33444443
No 87
>KOG4124|consensus
Probab=65.08 E-value=0.79 Score=38.84 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=39.6
Q ss_pred CCCcccccCCCCcccccChHHHHhHH-----hhccCCCccccccCCCCcccccccccchHHHHHhHh
Q psy11068 53 KQQLWSCPIVNCNFTSVNLNTFKIHL-----LKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMT 114 (292)
Q Consensus 53 ~~~~~~C~~~~C~~~~~~~~~l~~H~-----~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~ 114 (292)
.+.+|.|.+..|.+..........|- ..-+-.+||+|. |++.+.++..|..|-.
T Consensus 175 EE~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~t~~~p~k~~--------~~~~~~T~~~l~~HS~ 233 (442)
T KOG4124|consen 175 EEYRVSVVVPAAAAAAAAANSSDMSSDEASSTAETTGTPKKMP--------ESLVMDTSSPLSDHSM 233 (442)
T ss_pred ccccccccCchhhhhhhccccccccccccccccccccCCccCc--------ccccccccchhhhccc
Confidence 55678888888888877666655543 233345789998 9999999999888843
No 88
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=64.81 E-value=4.4 Score=21.93 Aligned_cols=7 Identities=43% Similarity=0.952 Sum_probs=2.9
Q ss_pred cccCCCc
Q psy11068 215 LVCKGCG 221 (292)
Q Consensus 215 ~~C~~C~ 221 (292)
..|++|+
T Consensus 19 ~~CP~Cg 25 (34)
T cd00729 19 EKCPICG 25 (34)
T ss_pred CcCcCCC
Confidence 3344443
No 89
>KOG2186|consensus
Probab=64.19 E-value=4.4 Score=32.98 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=29.6
Q ss_pred eeCCCCCCCcccCCHHHHHHHHHHhcCCCCCcccCCCcccccChhHHHHHHH
Q psy11068 184 YMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235 (292)
Q Consensus 184 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~ 235 (292)
|.|.. ||....-. .+.+|+..-++ .-|.|-.|++.|.. .+...|..
T Consensus 4 FtCnv--CgEsvKKp-~vekH~srCrn--~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNV--CGESVKKP-QVEKHMSRCRN--AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhh--hhhhcccc-chHHHHHhccC--CeeEEeeccccccc-chhhhhhh
Confidence 66766 77765443 45567776633 45777777777776 55666655
No 90
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=62.67 E-value=3.4 Score=32.55 Aligned_cols=20 Identities=25% Similarity=0.668 Sum_probs=0.0
Q ss_pred ccccCCCCc-ccccChHHHHhHH
Q psy11068 57 WSCPIVNCN-FTSVNLNTFKIHL 78 (292)
Q Consensus 57 ~~C~~~~C~-~~~~~~~~l~~H~ 78 (292)
|.|.| || .++.....+.+|.
T Consensus 102 y~CEI--CGN~~Y~GrkaFekHF 122 (196)
T PF11931_consen 102 YKCEI--CGNQSYKGRKAFEKHF 122 (196)
T ss_dssp -----------------------
T ss_pred eeeEe--CCCcceecHHHHHHhc
Confidence 45554 42 2344444444443
No 91
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.93 E-value=6.3 Score=27.86 Aligned_cols=15 Identities=33% Similarity=0.933 Sum_probs=9.2
Q ss_pred CCcccCCCcccccCh
Q psy11068 213 EDLVCKGCGKQFKVP 227 (292)
Q Consensus 213 ~~~~C~~C~~~f~~~ 227 (292)
.|..|+.||..|.-.
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 566666666666544
No 92
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=61.92 E-value=6 Score=31.73 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=21.6
Q ss_pred CCCcccCCCcccccChhHHHHHHHHhcC
Q psy11068 212 PEDLVCKGCGKQFKVPCRLREHYKAVHE 239 (292)
Q Consensus 212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 239 (292)
+..|.|..|+|.|.-..-+++|+...|.
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 4459999999999999999999988885
No 93
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=61.14 E-value=5.7 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.582 Sum_probs=6.8
Q ss_pred CcccCCCcccccC
Q psy11068 214 DLVCKGCGKQFKV 226 (292)
Q Consensus 214 ~~~C~~C~~~f~~ 226 (292)
.|.|+.||..-..
T Consensus 27 ~F~CPnCGe~~I~ 39 (61)
T COG2888 27 KFPCPNCGEVEIY 39 (61)
T ss_pred EeeCCCCCceeee
Confidence 3556666644443
No 94
>KOG2636|consensus
Probab=60.68 E-value=2.5 Score=37.19 Aligned_cols=23 Identities=17% Similarity=0.626 Sum_probs=13.5
Q ss_pred CCccccccCCCCccccc-ccccchHHHHHhH
Q psy11068 84 KRPFKCKLTTANNTPCM-WGFFSKHKLLRHM 113 (292)
Q Consensus 84 ~~~~~C~~~~~~~~~C~-~~f~~~~~l~~H~ 113 (292)
...|.|.+ || +++.-+..+.+|.
T Consensus 399 ~~ey~CEI-------CGNy~Y~GrkaF~RHF 422 (497)
T KOG2636|consen 399 DIEYNCEI-------CGNYVYKGRKAFDRHF 422 (497)
T ss_pred Ccccceee-------ccCccccCcHHHHHHh
Confidence 44566666 65 5566666666664
No 95
>PHA00626 hypothetical protein
Probab=60.18 E-value=4.8 Score=24.37 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=7.7
Q ss_pred CcccCCcCCccccccC
Q psy11068 242 KNFKCTYDGCKLLFST 257 (292)
Q Consensus 242 ~~~~C~~~~C~~~f~~ 257 (292)
..|+|+. ||..|+.
T Consensus 22 nrYkCkd--CGY~ft~ 35 (59)
T PHA00626 22 DDYVCCD--CGYNDSK 35 (59)
T ss_pred cceEcCC--CCCeech
Confidence 4566644 6665543
No 96
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=59.45 E-value=8.3 Score=21.26 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=4.2
Q ss_pred cccCCCcccc
Q psy11068 215 LVCKGCGKQF 224 (292)
Q Consensus 215 ~~C~~C~~~f 224 (292)
.+|+.|+..|
T Consensus 26 vrC~~C~~~f 35 (37)
T PF13719_consen 26 VRCPKCGHVF 35 (37)
T ss_pred EECCCCCcEe
Confidence 4444444333
No 97
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=59.10 E-value=2.9 Score=27.13 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=7.8
Q ss_pred CCcccCCcCCccccccC
Q psy11068 241 TKNFKCTYDGCKLLFST 257 (292)
Q Consensus 241 ~~~~~C~~~~C~~~f~~ 257 (292)
++-++|...+||.+|..
T Consensus 25 ~~Y~qC~N~eCg~tF~t 41 (72)
T PRK09678 25 ERYHQCQNVNCSATFIT 41 (72)
T ss_pred eeeeecCCCCCCCEEEE
Confidence 34455542235555543
No 98
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=58.11 E-value=5.5 Score=30.50 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=15.0
Q ss_pred CcccCCCcccccChhHHHHHHHHhcCCCCcccCCcCCcc
Q psy11068 214 DLVCKGCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCK 252 (292)
Q Consensus 214 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~ 252 (292)
.|.|++||. +|.++.|-.||+ ||
T Consensus 134 ~~vC~vCGy--------------~~~ge~P~~CPi--Cg 156 (166)
T COG1592 134 VWVCPVCGY--------------THEGEAPEVCPI--CG 156 (166)
T ss_pred EEEcCCCCC--------------cccCCCCCcCCC--CC
Confidence 577777762 345567777766 76
No 99
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.95 E-value=8.3 Score=27.27 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=6.5
Q ss_pred CcccCCcCCccccccC
Q psy11068 242 KNFKCTYDGCKLLFST 257 (292)
Q Consensus 242 ~~~~C~~~~C~~~f~~ 257 (292)
.|-.|++ ||..|.-
T Consensus 25 ~PivCP~--CG~~~~~ 38 (108)
T PF09538_consen 25 DPIVCPK--CGTEFPP 38 (108)
T ss_pred CCccCCC--CCCccCc
Confidence 4444544 5544433
No 100
>PF15269 zf-C2H2_7: Zinc-finger
Probab=56.81 E-value=20 Score=20.62 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=15.4
Q ss_pred ccccCCCCcccccChHHHHhHHhh
Q psy11068 57 WSCPIVNCNFTSVNLNTFKIHLLK 80 (292)
Q Consensus 57 ~~C~~~~C~~~~~~~~~l~~H~~~ 80 (292)
|+|- +|.++...++.|-.||+-
T Consensus 21 ykcf--qcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCF--QCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceee--cCCcccchHHHHHHHHHH
Confidence 4555 677777777777777753
No 101
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.69 E-value=2.8 Score=33.72 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=24.9
Q ss_pred CceeCCCCCCCcccCCHHHHHHHHHHh---------cCCCCC-----cccCCCcccccCh
Q psy11068 182 APYMCDYKGCGKSFYLMASLKSHQRVH---------VTNPED-----LVCKGCGKQFKVP 227 (292)
Q Consensus 182 ~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~-----~~C~~C~~~f~~~ 227 (292)
+.+.|++ |+..|.++..+....+.- ..+..| ..|+.||.+|...
T Consensus 4 k~~~CPv--C~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPV--CGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCC--CCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4467766 777777654443333321 012222 5699999887644
No 102
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=52.11 E-value=14 Score=18.56 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=11.9
Q ss_pred cCCcCCccccccCHHHHHhHhh
Q psy11068 245 KCTYDGCKLLFSTKSALKRHNK 266 (292)
Q Consensus 245 ~C~~~~C~~~f~~~~~l~~H~~ 266 (292)
.|++ |++.+ ....+.+|+.
T Consensus 3 ~CPi--C~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPV--CFREV-PENLINSHLD 21 (26)
T ss_pred cCCC--CcCcc-cHHHHHHHHH
Confidence 5666 77776 5556666654
No 103
>KOG2186|consensus
Probab=50.05 E-value=10 Score=30.93 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=35.2
Q ss_pred cccccCCCCcccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcC
Q psy11068 56 LWSCPIVNCNFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHD 117 (292)
Q Consensus 56 ~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~ 117 (292)
.|.|.+ ||....-+ .+.+|+...++ ..|.|-- |++.|.. .....|..-.+
T Consensus 3 ~FtCnv--CgEsvKKp-~vekH~srCrn-~~fSCID-------C~k~F~~-~sYknH~kCIT 52 (276)
T KOG2186|consen 3 FFTCNV--CGESVKKP-QVEKHMSRCRN-AYFSCID-------CGKTFER-VSYKNHTKCIT 52 (276)
T ss_pred EEehhh--hhhhcccc-chHHHHHhccC-CeeEEee-------ccccccc-chhhhhhhhcc
Confidence 377886 88766653 56678877776 6678877 8888887 66777765444
No 104
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=49.51 E-value=14 Score=22.83 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=6.3
Q ss_pred CcccCCCccc
Q psy11068 214 DLVCKGCGKQ 223 (292)
Q Consensus 214 ~~~C~~C~~~ 223 (292)
.|.|+.||..
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 4666666665
No 105
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=48.77 E-value=12 Score=27.40 Aligned_cols=14 Identities=43% Similarity=0.916 Sum_probs=7.5
Q ss_pred CcccccCCCCcccccC
Q psy11068 55 QLWSCPIVNCNFTSVN 70 (292)
Q Consensus 55 ~~~~C~~~~C~~~~~~ 70 (292)
+.|+|.| |..+...
T Consensus 79 ~lYeCnI--C~etS~e 92 (140)
T PF05290_consen 79 KLYECNI--CKETSAE 92 (140)
T ss_pred CceeccC--cccccch
Confidence 3566665 5555443
No 106
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=47.26 E-value=13 Score=22.78 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy11068 229 RLREHYK 235 (292)
Q Consensus 229 ~L~~H~~ 235 (292)
.|..|+.
T Consensus 25 ~l~~H~~ 31 (60)
T PF02176_consen 25 ELDDHLE 31 (60)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 107
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=47.02 E-value=23 Score=26.97 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=9.2
Q ss_pred CceeCCCCCCCcccCCHHHH
Q psy11068 182 APYMCDYKGCGKSFYLMASL 201 (292)
Q Consensus 182 ~~~~C~~~~C~~~f~~~~~l 201 (292)
.-|.|+. |+..|+....+
T Consensus 108 ~~Y~Cp~--c~~r~tf~eA~ 125 (158)
T TIGR00373 108 MFFICPN--MCVRFTFNEAM 125 (158)
T ss_pred CeEECCC--CCcEeeHHHHH
Confidence 3455644 55555554444
No 108
>KOG2071|consensus
Probab=46.59 E-value=17 Score=33.55 Aligned_cols=14 Identities=36% Similarity=0.897 Sum_probs=8.8
Q ss_pred CCcCCCCCccCCcccc
Q psy11068 272 MRMFPCPLVTCGKSFL 287 (292)
Q Consensus 272 ~~~~~C~~~~C~~~f~ 287 (292)
++...|++ |+-.|.
T Consensus 511 e~~~~C~I--C~EkFe 524 (579)
T KOG2071|consen 511 ERQASCPI--CQEKFE 524 (579)
T ss_pred ccccCCcc--cccccc
Confidence 55666766 766663
No 109
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=45.98 E-value=27 Score=26.19 Aligned_cols=11 Identities=18% Similarity=0.815 Sum_probs=5.0
Q ss_pred cccCCCccccc
Q psy11068 215 LVCKGCGKQFK 225 (292)
Q Consensus 215 ~~C~~C~~~f~ 225 (292)
|.|+.|+..|.
T Consensus 100 Y~Cp~C~~~y~ 110 (147)
T smart00531 100 YKCPNCQSKYT 110 (147)
T ss_pred EECcCCCCEee
Confidence 44444444444
No 110
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=45.68 E-value=15 Score=21.24 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=4.7
Q ss_pred CcccCCCcc
Q psy11068 214 DLVCKGCGK 222 (292)
Q Consensus 214 ~~~C~~C~~ 222 (292)
+.+|+.||.
T Consensus 19 ~irC~~CG~ 27 (44)
T smart00659 19 VVRCRECGY 27 (44)
T ss_pred ceECCCCCc
Confidence 455555553
No 111
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=45.56 E-value=4.1 Score=30.83 Aligned_cols=13 Identities=38% Similarity=0.818 Sum_probs=7.6
Q ss_pred cccCCCcccccCh
Q psy11068 215 LVCKGCGKQFKVP 227 (292)
Q Consensus 215 ~~C~~C~~~f~~~ 227 (292)
++|+.||++|.+-
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 5566666666544
No 112
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=44.60 E-value=14 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=22.8
Q ss_pred CCCcccCCcCCccccccCHHHHHhHhhhhcC
Q psy11068 240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHL 270 (292)
Q Consensus 240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~ 270 (292)
.+..|.|+. |+|.|.-..-...|+..+|.
T Consensus 74 ~~~K~~C~l--c~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 74 DEDKWRCPL--CGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SSEEEEE-S--SS-EESSHHHHHHHHHHH-H
T ss_pred cCCEECCCC--CCcccCChHHHHHHHhhcCH
Confidence 345699988 99999999999999998885
No 113
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=43.38 E-value=19 Score=26.12 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=8.8
Q ss_pred CCcccCCCcccccCh
Q psy11068 213 EDLVCKGCGKQFKVP 227 (292)
Q Consensus 213 ~~~~C~~C~~~f~~~ 227 (292)
.|..|+.||..|...
T Consensus 25 ~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 25 RPAVSPYTGEQFPPE 39 (129)
T ss_pred CCccCCCcCCccCcc
Confidence 466666666665443
No 114
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.49 E-value=18 Score=27.77 Aligned_cols=24 Identities=29% Similarity=0.739 Sum_probs=20.3
Q ss_pred cccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCc
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGK 284 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~ 284 (292)
-|.|++ ||. .|.++.|-+||+ ||-
T Consensus 134 ~~vC~v--CGy--------------~~~ge~P~~CPi--Cga 157 (166)
T COG1592 134 VWVCPV--CGY--------------THEGEAPEVCPI--CGA 157 (166)
T ss_pred EEEcCC--CCC--------------cccCCCCCcCCC--CCC
Confidence 699988 995 467799999999 983
No 115
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=42.17 E-value=16 Score=21.11 Aligned_cols=7 Identities=43% Similarity=1.179 Sum_probs=2.9
Q ss_pred cccCCCc
Q psy11068 215 LVCKGCG 221 (292)
Q Consensus 215 ~~C~~C~ 221 (292)
..|+.||
T Consensus 22 ~~Cp~CG 28 (46)
T PRK00398 22 VRCPYCG 28 (46)
T ss_pred eECCCCC
Confidence 3344444
No 116
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=41.15 E-value=6.7 Score=22.95 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=4.8
Q ss_pred CCCCCccCCccc
Q psy11068 275 FPCPLVTCGKSF 286 (292)
Q Consensus 275 ~~C~~~~C~~~f 286 (292)
|.|..+.||.+|
T Consensus 26 ~qC~N~~Cg~tf 37 (47)
T PF04606_consen 26 CQCTNPECGHTF 37 (47)
T ss_pred EEECCCcCCCEE
Confidence 334333344444
No 117
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=39.25 E-value=27 Score=25.71 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=15.8
Q ss_pred CCCcccccCCCCcccccChHHHHhHHhhccCCCc
Q psy11068 53 KQQLWSCPIVNCNFTSVNLNTFKIHLLKHFDKRP 86 (292)
Q Consensus 53 ~~~~~~C~~~~C~~~~~~~~~l~~H~~~h~~~~~ 86 (292)
......|-+ ||+.|.. |.+|++.|+|..|
T Consensus 69 ~~d~i~cle--cGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 69 TPDYIICLE--CGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp -SS-EE-TB--T--EESB---HHHHHHHTT-S-H
T ss_pred ccCeeEEcc--CCcccch---HHHHHHHccCCCH
Confidence 334567775 8888876 5888888877543
No 118
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.59 E-value=16 Score=18.35 Aligned_cols=10 Identities=40% Similarity=1.155 Sum_probs=5.5
Q ss_pred ccCCCccccc
Q psy11068 216 VCKGCGKQFK 225 (292)
Q Consensus 216 ~C~~C~~~f~ 225 (292)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 3666665553
No 119
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=38.40 E-value=15 Score=21.77 Aligned_cols=7 Identities=43% Similarity=1.227 Sum_probs=3.3
Q ss_pred cccCCCc
Q psy11068 215 LVCKGCG 221 (292)
Q Consensus 215 ~~C~~C~ 221 (292)
..|+.||
T Consensus 25 irCp~Cg 31 (49)
T COG1996 25 IRCPYCG 31 (49)
T ss_pred eeCCCCC
Confidence 4455444
No 120
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=37.74 E-value=43 Score=25.50 Aligned_cols=18 Identities=11% Similarity=0.229 Sum_probs=10.7
Q ss_pred CCcccCCCcccccChhHH
Q psy11068 213 EDLVCKGCGKQFKVPCRL 230 (292)
Q Consensus 213 ~~~~C~~C~~~f~~~~~L 230 (292)
.-|.|+.|+..|+....+
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAM 125 (158)
T ss_pred CeEECCCCCcEeeHHHHH
Confidence 446666666666655555
No 121
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=37.52 E-value=11 Score=21.45 Aligned_cols=7 Identities=43% Similarity=1.341 Sum_probs=3.1
Q ss_pred cccCCCc
Q psy11068 215 LVCKGCG 221 (292)
Q Consensus 215 ~~C~~C~ 221 (292)
-.|+.|+
T Consensus 27 ~~CP~Cg 33 (42)
T PF09723_consen 27 VPCPECG 33 (42)
T ss_pred CcCCCCC
Confidence 3444444
No 122
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=37.28 E-value=21 Score=27.81 Aligned_cols=17 Identities=18% Similarity=0.379 Sum_probs=9.8
Q ss_pred CCcccCCCcccccChhH
Q psy11068 213 EDLVCKGCGKQFKVPCR 229 (292)
Q Consensus 213 ~~~~C~~C~~~f~~~~~ 229 (292)
.-|.|+.|+..|+....
T Consensus 116 ~~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEA 132 (178)
T ss_pred CEEECCCCCcEEeHHHH
Confidence 34666666666655443
No 123
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=37.02 E-value=24 Score=26.49 Aligned_cols=39 Identities=23% Similarity=0.576 Sum_probs=26.8
Q ss_pred CCCcccCCcCCccccccCHHHHHhHhhhhcCCCCcCCCCCccCCcccc
Q psy11068 240 STKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPLVTCGKSFL 287 (292)
Q Consensus 240 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~~~C~~~f~ 287 (292)
+..-|.|+. |+..|.....+.. ... ...|.|+. ||....
T Consensus 96 ~~~~Y~Cp~--C~~~y~~~ea~~~----~d~-~~~f~Cp~--Cg~~l~ 134 (147)
T smart00531 96 NNAYYKCPN--CQSKYTFLEANQL----LDM-DGTFTCPR--CGEELE 134 (147)
T ss_pred CCcEEECcC--CCCEeeHHHHHHh----cCC-CCcEECCC--CCCEEE
Confidence 445699987 9999986655432 122 34499998 998763
No 124
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=36.18 E-value=14 Score=20.52 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=3.6
Q ss_pred cccCCCcc
Q psy11068 215 LVCKGCGK 222 (292)
Q Consensus 215 ~~C~~C~~ 222 (292)
-.|+.||.
T Consensus 27 ~~CP~Cg~ 34 (41)
T smart00834 27 ATCPECGG 34 (41)
T ss_pred CCCCCCCC
Confidence 34554443
No 125
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=35.75 E-value=15 Score=21.84 Aligned_cols=6 Identities=50% Similarity=1.564 Sum_probs=2.7
Q ss_pred ccCCCc
Q psy11068 216 VCKGCG 221 (292)
Q Consensus 216 ~C~~C~ 221 (292)
.|+.|+
T Consensus 28 ~CP~Cg 33 (52)
T TIGR02605 28 TCPECG 33 (52)
T ss_pred CCCCCC
Confidence 344444
No 126
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=33.90 E-value=39 Score=18.00 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=4.8
Q ss_pred CcccCCCccc
Q psy11068 214 DLVCKGCGKQ 223 (292)
Q Consensus 214 ~~~C~~C~~~ 223 (292)
+.+|+.||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 4555555543
No 127
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=33.18 E-value=1e+02 Score=23.44 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCCcccccCCCC-cccccChHHHHhHHhhccCCCccccccCCCCcccccccccchHHHHHhHhhcCCCCCC
Q psy11068 53 KQQLWSCPIVNC-NFTSVNLNTFKIHLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKC 122 (292)
Q Consensus 53 ~~~~~~C~~~~C-~~~~~~~~~l~~H~~~h~~~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~ 122 (292)
....+.|++ | |.++.+.- ..-.+.+.+.++-.|...+ |.+. .+...|.+|.+.-+...+|
T Consensus 77 ~~~~L~CPL--CRG~V~GWtv--ve~AR~~LN~K~RsC~~e~-----C~F~-GtY~eLrKHar~~HP~~rP 137 (162)
T PF07800_consen 77 EQPELACPL--CRGEVKGWTV--VEPARRFLNAKKRSCSQES-----CSFS-GTYSELRKHARSEHPSARP 137 (162)
T ss_pred ccccccCcc--ccCceeceEE--chHHHHHhccCCccCcccc-----cccc-cCHHHHHHHHHhhCCCCCC
Confidence 334688998 6 55544431 1225556677888888766 6553 6788999999876655444
No 128
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=31.29 E-value=11 Score=19.42 Aligned_cols=8 Identities=50% Similarity=1.352 Sum_probs=3.2
Q ss_pred cCCCcccc
Q psy11068 217 CKGCGKQF 224 (292)
Q Consensus 217 C~~C~~~f 224 (292)
|-.|++.|
T Consensus 3 CiDC~~~F 10 (28)
T PF08790_consen 3 CIDCSKDF 10 (28)
T ss_dssp ETTTTEEE
T ss_pred eecCCCCc
Confidence 33344444
No 129
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=30.61 E-value=53 Score=18.54 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=4.5
Q ss_pred ccCCCcccc
Q psy11068 216 VCKGCGKQF 224 (292)
Q Consensus 216 ~C~~C~~~f 224 (292)
.|+.||..|
T Consensus 15 ~C~~CgM~Y 23 (41)
T PF13878_consen 15 TCPTCGMLY 23 (41)
T ss_pred CCCCCCCEE
Confidence 455555544
No 130
>KOG1280|consensus
Probab=30.25 E-value=44 Score=28.76 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCCcccCCCcccccChhHHHHHHHHhcCC
Q psy11068 212 PEDLVCKGCGKQFKVPCRLREHYKAVHES 240 (292)
Q Consensus 212 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 240 (292)
...|.|++|+++=-+...|..|....|..
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpd 105 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPE 105 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcc
Confidence 34688888888777778888888877754
No 131
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=29.85 E-value=36 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=21.7
Q ss_pred cccCCcCCccccccCHHHHHhHhhhhcCCC
Q psy11068 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNM 272 (292)
Q Consensus 243 ~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~ 272 (292)
-+.|+. |.+.|.....+..|+...|.+.
T Consensus 57 FWiCp~--CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 57 FWICPR--CSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred EeeCCc--ccceeCCHHHHHHHHHHhhhhh
Confidence 367877 8888888888888888777654
No 132
>KOG0717|consensus
Probab=29.38 E-value=33 Score=30.83 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred ccccCCCCcccccChHHHHhHHhh
Q psy11068 57 WSCPIVNCNFTSVNLNTFKIHLLK 80 (292)
Q Consensus 57 ~~C~~~~C~~~~~~~~~l~~H~~~ 80 (292)
+-|.+ |+++|.+...|..|..+
T Consensus 293 lyC~v--CnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVV--CNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEee--ccccccchHHHHhhHHH
Confidence 78997 99999999999999753
No 133
>KOG3408|consensus
Probab=29.17 E-value=32 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=16.9
Q ss_pred CCccccccCCCCcccccccccchHHHHHhHhh
Q psy11068 84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTS 115 (292)
Q Consensus 84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~ 115 (292)
...|.|-. |.+.|.+...|..|.++
T Consensus 55 ~GqfyCi~-------CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 55 GGQFYCIE-------CARYFIDAKALKTHFKT 79 (129)
T ss_pred Cceeehhh-------hhhhhcchHHHHHHHhc
Confidence 34466666 77777777777777654
No 134
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=28.59 E-value=37 Score=20.12 Aligned_cols=13 Identities=46% Similarity=1.117 Sum_probs=5.9
Q ss_pred CcccCCCcccccC
Q psy11068 214 DLVCKGCGKQFKV 226 (292)
Q Consensus 214 ~~~C~~C~~~f~~ 226 (292)
.+.|..||..|..
T Consensus 4 ~l~C~dCg~~Fvf 16 (49)
T PF13451_consen 4 TLTCKDCGAEFVF 16 (49)
T ss_pred eEEcccCCCeEEE
Confidence 3444444444443
No 135
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.42 E-value=39 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=7.4
Q ss_pred CCcccCCCcccc
Q psy11068 213 EDLVCKGCGKQF 224 (292)
Q Consensus 213 ~~~~C~~C~~~f 224 (292)
.|..|+.||++|
T Consensus 25 dPiVsPytG~s~ 36 (129)
T COG4530 25 DPIVSPYTGKSY 36 (129)
T ss_pred CccccCcccccc
Confidence 456666666666
No 136
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=26.58 E-value=1.6e+02 Score=19.21 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=22.5
Q ss_pred CccCCCcccch-hcCChHHHHHHHHhcCCCCccc
Q psy11068 122 CYPCDQKNCNK-RFTTLSNLKMHMVRHGKPLTLC 154 (292)
Q Consensus 122 ~~~c~c~~C~~-~f~~~~~l~~H~~~h~~~~~~~ 154 (292)
...|+|..|.- .+.....+..|+....-...|.
T Consensus 37 ~i~CPC~~C~N~~~~~~~~V~~HL~~~Gf~~~Y~ 70 (77)
T PF13963_consen 37 MIRCPCRKCKNEKRQSRDDVHEHLVCRGFMPNYT 70 (77)
T ss_pred ceECCchhhccCccCCHHHHHHHHHHhCCCCCCC
Confidence 46788878863 5677778888887765555444
No 137
>KOG4167|consensus
Probab=26.45 E-value=21 Score=33.88 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=25.1
Q ss_pred CCcccccccccchhccChHHHHHHHhhhcC
Q psy11068 150 PLTLCCEELGCGRKFQTMKQYSTHLKEHSN 179 (292)
Q Consensus 150 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 179 (292)
...|.|.. |++.|..-.++..||++|.-
T Consensus 790 ~giFpCre--C~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 790 TGIFPCRE--CGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred CceeehHH--HHHHHHHHhhhhHHHHHHHH
Confidence 35699999 99999999999999999964
No 138
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=25.73 E-value=50 Score=29.98 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=17.5
Q ss_pred cccCCCcccccChhHHHHHHHHhcCC
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVHES 240 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H~~ 240 (292)
+.|+.|.+.|.....+..|+...|.+
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhh
Confidence 45777777777777777777666643
No 139
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.82 E-value=70 Score=24.92 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=8.3
Q ss_pred CcccccccccchhccChHH
Q psy11068 151 LTLCCEELGCGRKFQTMKQ 169 (292)
Q Consensus 151 ~~~~C~~~~C~~~f~~~~~ 169 (292)
..|.|+. |+..|..-..
T Consensus 116 ~~Y~Cp~--C~~rytf~eA 132 (178)
T PRK06266 116 MFFFCPN--CHIRFTFDEA 132 (178)
T ss_pred CEEECCC--CCcEEeHHHH
Confidence 4455555 5555544443
No 140
>KOG2593|consensus
Probab=24.57 E-value=81 Score=28.16 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=9.2
Q ss_pred CceeCCCCCCCcccCCHHH
Q psy11068 182 APYMCDYKGCGKSFYLMAS 200 (292)
Q Consensus 182 ~~~~C~~~~C~~~f~~~~~ 200 (292)
..|.|+. |.+.|.....
T Consensus 127 ~~Y~Cp~--C~kkyt~Lea 143 (436)
T KOG2593|consen 127 AGYVCPN--CQKKYTSLEA 143 (436)
T ss_pred ccccCCc--cccchhhhHH
Confidence 4466655 6666655433
No 141
>KOG3408|consensus
Probab=23.87 E-value=53 Score=23.59 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=17.6
Q ss_pred CcccccccccchhccChHHHHHHHhh
Q psy11068 151 LTLCCEELGCGRKFQTMKQYSTHLKE 176 (292)
Q Consensus 151 ~~~~C~~~~C~~~f~~~~~l~~H~~~ 176 (292)
..|-|.. |.+-|.+...|..|.++
T Consensus 56 GqfyCi~--CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 56 GQFYCIE--CARYFIDAKALKTHFKT 79 (129)
T ss_pred ceeehhh--hhhhhcchHHHHHHHhc
Confidence 4466777 88888888888887764
No 142
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=23.83 E-value=42 Score=20.54 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=4.5
Q ss_pred CcccCCCccccc
Q psy11068 214 DLVCKGCGKQFK 225 (292)
Q Consensus 214 ~~~C~~C~~~f~ 225 (292)
|+....|+-.|.
T Consensus 24 PV~s~~C~H~fe 35 (57)
T PF11789_consen 24 PVKSKKCGHTFE 35 (57)
T ss_dssp EEEESSS--EEE
T ss_pred CcCcCCCCCeec
Confidence 444444444444
No 143
>KOG3002|consensus
Probab=22.92 E-value=1.2e+02 Score=25.85 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccchhccChHHHHHHHhhhcCCCCceeCCCC--CCCcccCCHHHHHHHHHHh
Q psy11068 159 GCGRKFQTMKQYSTHLKEHSNVSAPYMCDYK--GCGKSFYLMASLKSHQRVH 208 (292)
Q Consensus 159 ~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~h 208 (292)
||.++|..... ..|.+.-. -.||.|+.+ .|...- .-..|..|.+.-
T Consensus 115 GC~~~~~Y~~~-~~HE~~C~--f~~~~CP~p~~~C~~~G-~~~~l~~H~~~~ 162 (299)
T KOG3002|consen 115 GCTKSFPYGEK-SKHEKVCE--FRPCSCPVPGAECKYTG-SYKDLYAHLNDT 162 (299)
T ss_pred CCceeeccccc-cccccccc--cCCcCCCCCcccCCccC-cHHHHHHHHHhh
Confidence 46666665555 44544443 356777766 566553 334556665543
No 144
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=22.20 E-value=96 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=16.9
Q ss_pred ccccCCCCcccccChHHHHhHHhhccCCC
Q psy11068 57 WSCPIVNCNFTSVNLNTFKIHLLKHFDKR 85 (292)
Q Consensus 57 ~~C~~~~C~~~~~~~~~l~~H~~~h~~~~ 85 (292)
..|- .+|+.|+ +|++|+.+|.+-.
T Consensus 77 IicL--EDGkkfK---SLKRHL~t~~gmT 100 (148)
T COG4957 77 IICL--EDGKKFK---SLKRHLTTHYGLT 100 (148)
T ss_pred EEEe--ccCcchH---HHHHHHhcccCCC
Confidence 5665 5788775 4788888887743
No 145
>KOG2593|consensus
Probab=22.20 E-value=80 Score=28.20 Aligned_cols=39 Identities=18% Similarity=0.552 Sum_probs=25.4
Q ss_pred CCCCcccccccccchhccChHHHHHHHhhhcCCCCceeCCCCCCCcc
Q psy11068 148 GKPLTLCCEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKS 194 (292)
Q Consensus 148 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~~~C~~~ 194 (292)
+....|.|+. |.+.|.....++.-- .....|.|.. |+-.
T Consensus 124 t~~~~Y~Cp~--C~kkyt~Lea~~L~~----~~~~~F~C~~--C~ge 162 (436)
T KOG2593|consen 124 TNVAGYVCPN--CQKKYTSLEALQLLD----NETGEFHCEN--CGGE 162 (436)
T ss_pred cccccccCCc--cccchhhhHHHHhhc----ccCceEEEec--CCCc
Confidence 5566788988 998887766654321 1134588887 8643
No 146
>KOG1842|consensus
Probab=21.96 E-value=51 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=18.2
Q ss_pred cccCCCcccccChhHHHHHHHHhcCCC
Q psy11068 215 LVCKGCGKQFKVPCRLREHYKAVHEST 241 (292)
Q Consensus 215 ~~C~~C~~~f~~~~~L~~H~~~~H~~~ 241 (292)
|.|++|.+.|.+...|..|+...|.++
T Consensus 16 flCPiC~~dl~~~~~L~~H~d~eH~~e 42 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLDVEHFEE 42 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHhhhcccc
Confidence 667777777777777777766666544
No 147
>KOG3002|consensus
Probab=21.60 E-value=1.1e+02 Score=26.15 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCcccccChhHHHHHHHHhcCCCCcccCCcC--CccccccCHHHHHhHhhhhcCC
Q psy11068 219 GCGKQFKVPCRLREHYKAVHESTKNFKCTYD--GCKLLFSTKSALKRHNKSKHLN 271 (292)
Q Consensus 219 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~--~C~~~f~~~~~l~~H~~~~H~~ 271 (292)
-|.+.|.+... ..|.+ .- .-+||-|++. .|... ..-..|..|.+..|..
T Consensus 115 GC~~~~~Y~~~-~~HE~-~C-~f~~~~CP~p~~~C~~~-G~~~~l~~H~~~~hk~ 165 (299)
T KOG3002|consen 115 GCTKSFPYGEK-SKHEK-VC-EFRPCSCPVPGAECKYT-GSYKDLYAHLNDTHKS 165 (299)
T ss_pred CCceeeccccc-ccccc-cc-ccCCcCCCCCcccCCcc-CcHHHHHHHHHhhChh
Confidence 45666655544 33333 11 2255666554 45543 3344556666555543
No 148
>KOG1280|consensus
Probab=21.43 E-value=84 Score=27.14 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCccccccCCCCcccccccccchHHHHHhHhhcCCCCCCccCCCcccch
Q psy11068 84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCDQKNCNK 132 (292)
Q Consensus 84 ~~~~~C~~~~~~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~c~c~~C~~ 132 (292)
...|.|++ |+..=.+...|..|....+.+ ..+.+-|++|.-
T Consensus 77 ~qSftCPy-------C~~~Gfte~~f~~Hv~s~Hpd-a~~~~icp~c~~ 117 (381)
T KOG1280|consen 77 PQSFTCPY-------CGIMGFTERQFGTHVLSQHPE-ASTSVICPLCAA 117 (381)
T ss_pred cccccCCc-------ccccccchhHHHHHhhhcCcc-cCcceeeecccc
Confidence 34577776 777767777777777766655 234455555543
No 149
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=20.63 E-value=1.2e+02 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=6.5
Q ss_pred cCCCcccccChhHH
Q psy11068 217 CKGCGKQFKVPCRL 230 (292)
Q Consensus 217 C~~C~~~f~~~~~L 230 (292)
|-.||..|.....|
T Consensus 30 C~~Cg~~Y~d~~dL 43 (55)
T PF13821_consen 30 CFWCGTKYDDEEDL 43 (55)
T ss_pred eeeeCCccCCHHHH
Confidence 44444444444444
No 150
>PTZ00448 hypothetical protein; Provisional
Probab=20.35 E-value=1.9e+02 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=12.9
Q ss_pred cccccCCCCcccccChHHHHhHHhh
Q psy11068 56 LWSCPIVNCNFTSVNLNTFKIHLLK 80 (292)
Q Consensus 56 ~~~C~~~~C~~~~~~~~~l~~H~~~ 80 (292)
.|.|.. |+..|.+....+.|+++
T Consensus 314 ~~tC~~--C~v~F~~~~~qR~H~KS 336 (373)
T PTZ00448 314 MLLCRK--CNIQLMDHNAFKQHYRS 336 (373)
T ss_pred Cccccc--cccccCCHHHHHHHhhh
Confidence 355663 66666655555555543
No 151
>KOG1842|consensus
Probab=20.31 E-value=59 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=26.4
Q ss_pred CcccCCcCCccccccCHHHHHhHhhhhcCCCC
Q psy11068 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMR 273 (292)
Q Consensus 242 ~~~~C~~~~C~~~f~~~~~l~~H~~~~H~~~~ 273 (292)
..|.||+ |.+-|..-..|..|....|.++.
T Consensus 14 egflCPi--C~~dl~~~~~L~~H~d~eH~~ed 43 (505)
T KOG1842|consen 14 EGFLCPI--CLLDLPNLSALNDHLDVEHFEED 43 (505)
T ss_pred hcccCch--HhhhhhhHHHHHHHHhhhccccc
Confidence 4599998 99999999999999998897654
Done!