RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11068
(292 letters)
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 39.2 bits (92), Expect = 1e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+MC + CGK F L+ H+R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 31.5 bits (72), Expect = 0.006
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ + C C KRFT L+ H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 26.5 bits (59), Expect = 0.41
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
+ F CT+ C F+ L+RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 38.5 bits (90), Expect = 2e-05
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C ++GC KS+ + +LK+H R H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 33.1 bits (76), Expect = 0.002
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K + C + C K ++ L NLK H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 26.5 bits (59), Expect = 0.37
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
K KCT++GC+ +S LK H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 38.1 bits (89), Expect = 3e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C + C + F A L H R+H
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIH 27
Score = 30.8 bits (70), Expect = 0.012
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ Y C ++C++RF+ ++L H+ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 26.5 bits (59), Expect = 0.32
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
+ + C + C FS + L RH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH 23
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 37.3 bits (87), Expect = 6e-05
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C + GC K F +LKSH H
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 33.5 bits (77), Expect = 0.001
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ Y C CNK+F +NLK H++ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 28.9 bits (65), Expect = 0.058
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKS 267
+ + C +DGC F+ + LK H +
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
Score = 23.5 bits (51), Expect = 4.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHS 178
C GC +KF +H+ H+
Sbjct: 5 CPFDGCNKKFAQSTNLKSHILTHA 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 36.5 bits (85), Expect = 1e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY CD+ GC K+F L H++ H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 33.1 bits (76), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGK 149
+ Y CD C+K F +L H H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 28.1 bits (63), Expect = 0.12
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
+ + C + GC F L RH
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRH 24
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 35.8 bits (83), Expect = 2e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C ++GCGK F L +L++H R+H
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 30.8 bits (70), Expect = 0.012
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K + C + C KRF+ NL+ H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 24.6 bits (54), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
K F+CT++GC FS L+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.3 bits (79), Expect = 7e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 184 YMCDYKGCGKSFYLMASLKSHQRVH 208
+ C CGKSF LK H ++H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 30.5 bits (69), Expect = 0.019
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRH 147
+ C + C K F +LK HM H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLH 26
Score = 26.2 bits (58), Expect = 0.59
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 243 NFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPC 277
+F C C F+ K LK H K H + R + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYIC 34
Score = 25.8 bits (57), Expect = 0.66
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEHSNVSAPYMCDY 188
C E CG+ F K H+K HS+ Y+C++
Sbjct: 4 CPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEF 36
Score = 25.5 bits (56), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 217 CKGCGKQFKVPCRLREHYKAVHESTKNFKCTY 248
CGK F L+EH K +H T+++ C +
Sbjct: 6 EPACGKSFNFKKHLKEHMK-LHSDTRDYICEF 36
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 34.1 bits (78), Expect = 0.001
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 166 TMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVH 208
++ +Y + + + C + GC K+F +++SH + H
Sbjct: 6 SIDKYVKEMPDK-----TFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 32.2 bits (73), Expect = 0.005
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 104 FSKHKLLRHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ + +++ + K + C C K F N++ H+ H
Sbjct: 2 LPRGSIDKYVKEMPD--KTFECLFPGCTKTFKRRYNIRSHIQTH 43
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 34.7 bits (79), Expect = 0.001
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCKGCGKQFKVPCRLREHYK 235
Y C CGKSF + H +H+ C CGK+FK+ L H K
Sbjct: 3 LYPCQ---CGKSFTHKSQRDRHMSMHLGLRPY-GCGVCGKKFKMKHHLVGHMK 51
Score = 33.9 bits (77), Expect = 0.001
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRHGKPLTLCCEELGCGRKFQTMKQYSTHLKEH 177
K YPC C K FT S HM H C CG+KF+ H+K H
Sbjct: 2 KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 25.0 bits (54), Expect = 2.1
Identities = 11/47 (23%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 220 CGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNK 266
CGK F + H C F K L H K
Sbjct: 8 CGKSFTHKSQRDRHMSMHL---GLRPYGCGVCGKKFKMKHHLVGHMK 51
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 33.4 bits (77), Expect = 0.001
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L HQRVH
Sbjct: 7 PYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 29.5 bits (67), Expect = 0.036
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K Y C + C K F+ S L H H
Sbjct: 6 KPYGCVE--CGKAFSRSSILVQHQRVH 30
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 32.2 bits (74), Expect = 0.003
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C C ++F L +H R H
Sbjct: 3 PFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 27.6 bits (62), Expect = 0.14
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K + C C + F+ +L H+ H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTH 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 32.2 bits (74), Expect = 0.004
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
++C+ C ++F LK H R H
Sbjct: 2 SFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 28.0 bits (63), Expect = 0.098
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
+ + C+ C + F +LK H H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.9 bits (73), Expect = 0.005
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 217 CKGCGKQFKVPCRLREHYKAVHESTKNFKC 246
C+ CGK F P L H K VH S + KC
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 27.7 bits (62), Expect = 0.19
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 120 KKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K Y C C K F+ +L H+ +
Sbjct: 3 GKPYICQS--CGKGFSRPDHLNGHIKQV 28
Score = 27.7 bits (62), Expect = 0.19
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 183 PYMCDYKGCGKSFYLMASLKSH-QRVH 208
PY+C CGK F L H ++VH
Sbjct: 5 PYICQS--CGKGFSRPDHLNGHIKQVH 29
Score = 26.1 bits (58), Expect = 0.70
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCPL 279
K + C C FS L H K H + R C +
Sbjct: 4 KPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 23.4 bits (51), Expect = 6.0
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 84 KRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSHDEDKKCYPCD 126
+P+ C+ C GF L H+ ++ + C
Sbjct: 3 GKPYICQS-------CGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.0 bits (73), Expect = 0.005
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C + C K+F L H + +
Sbjct: 8 PYACSH--CDKTFRQKQLLDMHFKRY 31
Score = 28.9 bits (65), Expect = 0.067
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K Y C C+K F L MH R+
Sbjct: 7 KPYACSH--CDKTFRQKQLLDMHFKRY 31
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.5 bits (72), Expect = 0.008
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K Y C C+ RFT +KMH+++
Sbjct: 7 KPYECYI--CHARFTQSGTMKMHILQK 31
Score = 26.9 bits (60), Expect = 0.28
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 183 PYMCDYKGCGKSFYLMASLKSH-QRVH 208
PY C C F ++K H + H
Sbjct: 8 PYECYI--CHARFTQSGTMKMHILQKH 32
Score = 24.9 bits (55), Expect = 1.6
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKH 269
H K ++C C F+ +K H KH
Sbjct: 2 THSGEKPYECYI--CHARFTQSGTMKMHILQKH 32
Score = 23.8 bits (52), Expect = 4.7
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 217 CKGCGKQFKVPCRLREHYKAVH 238
C C +F ++ H H
Sbjct: 11 CYICHARFTQSGTMKMHILQKH 32
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 30.8 bits (69), Expect = 0.011
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C ++GC K F L + LK H++VH
Sbjct: 3 PYECPHEGCDKRFSLPSRLKRHEKVH 28
Score = 27.7 bits (61), Expect = 0.17
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 244 FKCTYDGCKLLFSTKSALKRHNK 266
++C ++GC FS S LKRH K
Sbjct: 4 YECPHEGCDKRFSLPSRLKRHEK 26
Score = 22.7 bits (48), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 218 KGCGKQFKVPCRLREHYK 235
+GC K+F +P RL+ H K
Sbjct: 9 EGCDKRFSLPSRLKRHEK 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.015
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
+ C C K F L H + H
Sbjct: 2 KFACPE--CPKRFMRSDHLSKHIKTH 25
Score = 26.9 bits (60), Expect = 0.25
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K + C + C KRF +L H+ H
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTH 25
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 30.3 bits (69), Expect = 0.015
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY C CGK+F + L +HQR+H
Sbjct: 2 PYKC--LECGKAFSQNSGLINHQRIH 25
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 29.6 bits (66), Expect = 0.031
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKH 269
KNF C DGC L F+TK+ +K+H H
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNRFH 28
Score = 24.6 bits (53), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVR 146
K + CD C+ RFTT +N+K H R
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFNR 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 29.7 bits (67), Expect = 0.032
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVHV 209
P+ C C +SF L H++ H+
Sbjct: 11 PFQCPD--CDRSFSRSDHLALHRKRHM 35
Score = 27.0 bits (60), Expect = 0.33
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K + C C++ F+ +L +H RH
Sbjct: 10 KPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 24.3 bits (53), Expect = 2.3
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 237 VHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNM 272
K F+C FS L H K +H+ +
Sbjct: 5 GSTGIKPFQCPDCDRS--FSRSDHLALHRK-RHMLV 37
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 29.0 bits (65), Expect = 0.054
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 111 RHMTSHDEDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
R E + Y CD+ C K F+ S+L H H
Sbjct: 2 RSEWQQRERR-RYKCDE--CGKSFSHSSDLSKHRRTH 35
Score = 27.0 bits (60), Expect = 0.27
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
Y CD CGKSF + L H+R H
Sbjct: 12 RYKCDE--CGKSFSHSSDLSKHRRTH 35
Score = 26.7 bits (59), Expect = 0.44
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 77 HLLKHFDKRPFKCKLTTANNTPCMWGFFSKHKLLRHMTSH 116
+ ++R +KC C F L +H +H
Sbjct: 3 SEWQQRERRRYKCD-------ECGKSFSHSSDLSKHRRTH 35
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 29.0 bits (65), Expect = 0.063
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P++C C +F A+ H +VH
Sbjct: 7 PFVCRI--CLSAFTTKANCARHLKVH 30
Score = 25.5 bits (56), Expect = 1.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 124 PCDQKNCNKRFTTLSNLKMHMVRH 147
P + C FTT +N H+ H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 27.9 bits (62), Expect = 0.13
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
PY+C GC K + +SL+ H +
Sbjct: 2 PYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 26.0 bits (57), Expect = 0.67
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K Y C C KR+T S+L+ H+
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 24.0 bits (52), Expect = 2.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 218 KGCGKQFKVPCRLREHYKAVH 238
GC K++ P LR+H K VH
Sbjct: 8 PGCTKRYTDPSSLRKHVKTVH 28
Score = 23.7 bits (51), Expect = 4.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRHNKSKH 269
K + C GC ++ S+L++H K+ H
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 26.8 bits (59), Expect = 0.41
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 118 EDKKCYPCDQKNCNKRFTTLSNLKMHMVRH 147
D K + C C +RFT +L +H +H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 25.2 bits (55), Expect = 1.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P++C GCG+ F L H+ H
Sbjct: 6 PFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 22.9 bits (49), Expect = 8.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 155 CEELGCGRKFQTMKQYSTHLKEH 177
C GCG++F + H +H
Sbjct: 9 CTAPGCGQRFTNEDHLAVHKHKH 31
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.2 bits (57), Expect = 0.46
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 121 KCYPCDQKNCNKRFTTLSNLKMHMVRH 147
K +PC ++ C K FT+L +L H + H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 23.1 bits (49), Expect = 7.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQRVH 208
P+ C +GC K F + L H H
Sbjct: 2 PFPCKEEGCEKGFTSLHHLTRHSLTH 27
Score = 22.7 bits (48), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 242 KNFKCTYDGCKLLFSTKSALKRH 264
K F C +GC+ F++ L RH
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRH 23
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 25.8 bits (56), Expect = 0.77
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 246 CTYDGCKLLFSTKSALKRHNKSKHLNMR 273
C + GC +FS + L H K +H++ +
Sbjct: 3 CDFPGCGRIFSNRQYLNHHKKYQHIHQK 30
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 25.1 bits (54), Expect = 1.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 184 YMCDYKGCGKSFYLMASLKSHQRVH 208
Y+C ++ CGK+F LK HQ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Micrococcus luteus [TaxId: 1270]}
Length = 229
Score = 27.1 bits (59), Expect = 2.0
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 7/133 (5%)
Query: 159 GCGRKFQTMKQYSTHLKEHSNVSAPYMCDYKGCGKSFYLMASLKSHQRVHVTNPEDLVCK 218
R + + N P + + ++ + L H + V ++
Sbjct: 64 NWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKH 123
Query: 219 GCGKQFKVPCRLREHYKAVHESTKNFKCTYDGCKLLFSTKSALKRHNKSKHLNMRMFPCP 278
G +Y E + + K + + + +++L P P
Sbjct: 124 NTGLTLVFAL----NYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDP 179
Query: 279 ---LVTCGKSFLS 288
+ T G+ LS
Sbjct: 180 ELLIRTSGEERLS 192
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 24.5 bits (53), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 183 PYMCDYKGCGKSFYLMASLKSHQ-RVH 208
PYMC+++GC K+F + HQ R H
Sbjct: 2 PYMCEHEGCSKAFSNASDRAKHQNRTH 28
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 25.0 bits (54), Expect = 2.2
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 215 LVCKGCGKQFKVPCRLREHYKAVHEST 241
L C CGK F RLR+H +A H T
Sbjct: 7 LPCGLCGKVFTDANRLRQH-EAQHGVT 32
Score = 24.6 bits (53), Expect = 3.0
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 123 YPCDQKNCNKRFTTLSNLKMHMVRHG 148
PC C K FT + L+ H +HG
Sbjct: 7 LPCGL--CGKVFTDANRLRQHEAQHG 30
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.2 bits (52), Expect = 2.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 124 PCDQKNCNKRFTTLSNLKMHMVRHG 148
C K C K F S ++ H+ HG
Sbjct: 3 ACPHKGCTKMFRDNSAMRKHLHTHG 27
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 24.7 bits (53), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 212 PEDLVCKGCGKQFKVPCRLREHYKAVHES 240
P V +GC F + L HY+AVH+S
Sbjct: 20 PYRCVHQGCFAAFTIQQNLILHYQAVHKS 48
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.4 bits (50), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 191 CGKSFYLMASLKSHQRVH 208
CGK+F + LK HQ VH
Sbjct: 8 CGKAFVESSKLKRHQLVH 25
>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 146
Score = 25.1 bits (55), Expect = 6.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 18 NKEIDDEEDAITEALQSLGIN 38
N + +E I + LG++
Sbjct: 110 NLFLLQDEHRIRLVVNRLGLD 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.421
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,078,309
Number of extensions: 50552
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 142
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)